Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 196 of 322
Found at i:64394034 original size:49 final size:49
Alignment explanation
Indices: 64393964--64394837 Score: 1488
Period size: 49 Copynumber: 18.3 Consensus size: 49
64393954 GTGAACATGC
*
64393964 ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
64394013 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
64394060 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG---
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
64394106 ---TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
64394152 ATATGTGAT-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
1 ATATATG-TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
64394199 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
64394248 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
64394297 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
64394346 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
64394395 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
64394444 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
64394493 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
64394542 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
64394589 ATATATGTGATAAGGCCTGATGGCCGATGTGATGAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
64394636 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
64394683 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
64394730 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * * * * *
64394777 ATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
64394826 A-A-ATGTGATAAG
1 ATATATGTGATAAG
64394838 TCCCGAAGGG
Statistics
Matches: 799, Mismatches: 14, Indels: 26
0.95 0.02 0.03
Matches are distributed among these distances:
43 43 0.05
46 1 0.00
47 325 0.41
48 1 0.00
49 428 0.54
50 1 0.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:64394092 original size:22 final size:22
Alignment explanation
Indices: 64394064--64394135 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
64394054 AAGTGTATAT
64394064 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* * *
64394086 ATGTGATGAATG--TGAAAGTG--T
1 ATGTGAT-AAGGCCT-AATG-GCCG
64394107 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
64394129 ATGTGAT
1 ATGTGAT
64394136 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
20 4 0.11
21 11 0.30
22 18 0.49
23 4 0.11
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:64395012 original size:37 final size:37
Alignment explanation
Indices: 64394956--64395034 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
64394946 CCGAGCTCTA
* * *
64394956 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
64394993 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
64395030 AAGAC
1 AAGAC
64395035 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:64408530 original size:73 final size:73
Alignment explanation
Indices: 64408411--64408555 Score: 281
Period size: 73 Copynumber: 2.0 Consensus size: 73
64408401 AACATGGGTT
*
64408411 AGAACGGACTTACAATCGAGCTTGGAAGCTTTGGCCAAGACCTTAGCTATGGTGACTCTTCAAGT
1 AGAACGGACTTACAATCGAGCTTGGAAGCTTTGGCCAAGACCTTAGCTATGGTGACTCTTCAAAT
64408476 TCGACACA
66 TCGACACA
64408484 AGAACGGACTTACAATCGAGCTTGGAAGCTTTGGCCAAGACCTTAGCTATGGTGACTCTTCAAAT
1 AGAACGGACTTACAATCGAGCTTGGAAGCTTTGGCCAAGACCTTAGCTATGGTGACTCTTCAAAT
64408549 TCGACAC
66 TCGACAC
64408556 TAGAGGACTA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 71 1.00
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (73 bp):
AGAACGGACTTACAATCGAGCTTGGAAGCTTTGGCCAAGACCTTAGCTATGGTGACTCTTCAAAT
TCGACACA
Found at i:64416322 original size:64 final size:64
Alignment explanation
Indices: 64416217--64416341 Score: 189
Period size: 64 Copynumber: 2.0 Consensus size: 64
64416207 TTTGGAGGTT
* *
64416217 GATCGAGGAAAACGAATGGTTTCGGAATAATCGAAACGTGAAAACCGACACAAATACTAGGGTC
1 GATCGAGGAAAACGAATGGTTTCGGAATAACCAAAACGTGAAAACCGACACAAATACTAGGGTC
* * *
64416281 GATCGAGGAAAATGACA-GGTTTTGGAATAACCAAAATGTGAAAACCGACACAAATACTAGG
1 GATCGAGGAAAACGA-ATGGTTTCGGAATAACCAAAACGTGAAAACCGACACAAATACTAGG
64416342 TAAGTTCAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
64 54 0.98
65 1 0.02
ACGTcount: A:0.42, C:0.16, G:0.24, T:0.18
Consensus pattern (64 bp):
GATCGAGGAAAACGAATGGTTTCGGAATAACCAAAACGTGAAAACCGACACAAATACTAGGGTC
Found at i:64420163 original size:79 final size:81
Alignment explanation
Indices: 64420061--64420244 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 81
64420051 GCTCCTCGTT
* *
64420061 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
*
64420123 CGGAT-TTAGTAAC-TCGCA
63 CGGATATT-GTAACTTAGCA
**
64420141 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
*
64420205 ATATTGTCACTTAGCA
66 ATATTGTAACTTAGCA
64420221 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64420245 CATCATTCAA
Statistics
Matches: 92, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
78 14 0.15
79 56 0.61
80 22 0.24
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATTGTAACTTAGCA
Found at i:64420178 original size:39 final size:41
Alignment explanation
Indices: 64420061--64420244 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 41
64420051 GCTCCTCGTT
* *
64420061 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAATCTCGCA
* *
64420101 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAA-CTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
64420141 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
* * *
64420180 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAATC-TCGCA
64420221 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64420245 CATCATTCAA
Statistics
Matches: 128, Mismatches: 7, Indels: 19
0.83 0.05 0.12
Matches are distributed among these distances:
38 3 0.02
39 48 0.38
40 66 0.52
41 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
Found at i:64422707 original size:49 final size:50
Alignment explanation
Indices: 64422650--64422748 Score: 155
Period size: 50 Copynumber: 2.0 Consensus size: 50
64422640 CTTCCTACCC
*
64422650 GATGGTGACTAGCGT-GGGAGTGTAGATGACCAAAAGCCGAAGTGTAAAA
1 GATGGTGACTAGCGTGGGGAGTGTAGATAACCAAAAGCCGAAGTGTAAAA
* * *
64422699 GATGGTGACTTGTGTGGGGAGTGTAGATAACCAAAAGCTGAAGTGTAAAA
1 GATGGTGACTAGCGTGGGGAGTGTAGATAACCAAAAGCCGAAGTGTAAAA
64422749 ACTATAATAA
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
49 13 0.29
50 32 0.71
ACGTcount: A:0.34, C:0.10, G:0.34, T:0.21
Consensus pattern (50 bp):
GATGGTGACTAGCGTGGGGAGTGTAGATAACCAAAAGCCGAAGTGTAAAA
Found at i:64427235 original size:17 final size:17
Alignment explanation
Indices: 64427213--64427249 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
64427203 ACTCATTATT
64427213 TATTCAT-AACCTAAATA
1 TATTCATCAACC-AAATA
64427230 TATTCATCAACCAAATA
1 TATTCATCAACCAAATA
64427247 TAT
1 TAT
64427250 CTAATTTATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.46, C:0.19, G:0.00, T:0.35
Consensus pattern (17 bp):
TATTCATCAACCAAATA
Found at i:64428832 original size:56 final size:56
Alignment explanation
Indices: 64428695--64428833 Score: 206
Period size: 56 Copynumber: 2.5 Consensus size: 56
64428685 TCCCAGATAG
* * * * *
64428695 GGTCTTACTCACACACATTTATCGAAGTCACATATCGATGCCAACGTATAAAATGT
1 GGTCTTACTCACACACATATATCGATGTCACATATCAATGCCAACCTATAAAACGT
*
64428751 GGTCTTACTCTCACACATATATCGATGTCACATATCAATGCCAACCTATAAAACGT
1 GGTCTTACTCACACACATATATCGATGTCACATATCAATGCCAACCTATAAAACGT
* *
64428807 GGTCTTACTCGCACATATATATCGATG
1 GGTCTTACTCACACACATATATCGATG
64428834 CCATGGTATT
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 75 1.00
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.29
Consensus pattern (56 bp):
GGTCTTACTCACACACATATATCGATGTCACATATCAATGCCAACCTATAAAACGT
Found at i:64443449 original size:41 final size:40
Alignment explanation
Indices: 64443404--64443536 Score: 142
Period size: 41 Copynumber: 3.2 Consensus size: 40
64443394 TGAGGCATGT
* * *
64443404 ATGTGCATTTCAAGGGTATCGAAGTAC-GATCAGGGGAACGC
1 ATGTGCATTTCAGGGGTA-CGAAGTACAAAT-AGGGGAACAC
* *
64443445 ATGTGCATTTCAGGGGTACTGAAGTACAAATAGGGGCACAT
1 ATGTGCATTTCAGGGGTAC-GAAGTACAAATAGGGGAACAC
* * * *
64443486 ATGTGTATTTCAGGGGTACCGAAGTACAAATAGGAGCACAT
1 ATGTGCATTTCAGGGGTA-CGAAGTACAAATAGGGGAACAC
64443527 ATGTGCATTT
1 ATGTGCATTT
64443537 AAGAGAATAA
Statistics
Matches: 81, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
40 1 0.01
41 77 0.95
42 3 0.04
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.26
Consensus pattern (40 bp):
ATGTGCATTTCAGGGGTACGAAGTACAAATAGGGGAACAC
Found at i:64444401 original size:12 final size:12
Alignment explanation
Indices: 64444384--64444411 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
64444374 GGTCTAATTA
64444384 TCATTTAAAGTT
1 TCATTTAAAGTT
64444396 TCATTTAAAGTT
1 TCATTTAAAGTT
64444408 TCAT
1 TCAT
64444412 AGCTACTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.32, C:0.11, G:0.07, T:0.50
Consensus pattern (12 bp):
TCATTTAAAGTT
Found at i:64446450 original size:39 final size:40
Alignment explanation
Indices: 64446355--64446577 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
64446345 TTGAATGATG
*
64446355 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
64446393 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
64446434 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
64446473 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
64446512 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
64446551 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
64446578 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 13, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
39 91 0.56
40 59 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:64446549 original size:79 final size:81
Alignment explanation
Indices: 64446355--64446577 Score: 273
Period size: 79 Copynumber: 2.8 Consensus size: 81
64446345 TTGAATGATG
* * * *
64446355 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TTACTAATATCCGGGCTAAGACCCGAAGGCAT
*
64446417 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
*
64446434 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTAAT-TTCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-ATTACTAATATCCGGGCTAAGACCCGAAGGCAT
*
64446495 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
* * * *
64446512 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAATATCCGGGCTAAGACCCGAAGGCATT
64446576 TG
66 TG
64446578 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 47 0.38
79 53 0.42
80 24 0.19
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:64446599 original size:79 final size:79
Alignment explanation
Indices: 64446355--64446610 Score: 208
Period size: 79 Copynumber: 3.3 Consensus size: 79
64446345 TTGAATGATG
* * * *
64446355 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
64446416 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* **
64446434 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTTCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
64446498 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
64446512 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
64446575 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
64446592 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
64446611 TACGTGATTT
Statistics
Matches: 151, Mismatches: 16, Indels: 20
0.81 0.09 0.11
Matches are distributed among these distances:
77 1 0.01
78 46 0.30
79 67 0.44
80 36 0.24
81 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:64471553 original size:37 final size:37
Alignment explanation
Indices: 64471503--64471581 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
64471493 TTATTACGAA
* * *
64471503 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
64471540 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
64471577 GTCTT
1 GTCTT
64471582 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:64471778 original size:47 final size:47
Alignment explanation
Indices: 64471700--64472251 Score: 989
Period size: 47 Copynumber: 11.7 Consensus size: 47
64471690 CCCTTCGGGA
* * * * * *
64471700 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64471747 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64471794 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64471841 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64471888 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64471935 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64471982 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64472029 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64472076 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64472123 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64472170 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
64472217 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
64472252 AGAATCCTAA
Statistics
Matches: 491, Mismatches: 13, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
46 1 0.00
47 490 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:64484987 original size:30 final size:29
Alignment explanation
Indices: 64484953--64485012 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
64484943 TCCTTAACTC
64484953 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGG-AAAATTACAATTTTGCCCCT
* * * *
64484983 AAACTTTTGCAATTTACACTTTTGCCCCT
1 AAACTTTGGAAAATTACAATTTTGCCCCT
64485012 A
1 A
64485013 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 18 0.69
30 8 0.31
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.37
Consensus pattern (29 bp):
AAACTTTGGAAAATTACAATTTTGCCCCT
Found at i:64493902 original size:30 final size:30
Alignment explanation
Indices: 64493868--64493928 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
64493858 TTCTCGAGCC
64493868 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
64493898 TAGGGGCAAAATTTTAATTTTGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
64493928 T
1 T
64493929 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:64497680 original size:30 final size:30
Alignment explanation
Indices: 64497646--64497706 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
64497636 TTCTCGAGCC
64497646 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
64497676 TAGGGGCAAAATTTTAATTTTGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
64497706 T
1 T
64497707 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:64498932 original size:88 final size:88
Alignment explanation
Indices: 64498783--64498954 Score: 326
Period size: 88 Copynumber: 2.0 Consensus size: 88
64498773 ATGAAAATAT
64498783 ATTCATCAAGGTTCGTTTACATAATTTATTCACTATTTAATTCCATTCCTACTAGTTTTAGTGAT
1 ATTCATCAAGGTTCGTTTACATAATTTATTCACTATTTAATTCCATTCCTACTAGTTTTAGTGAT
64498848 TTTCCAAATCTACATCACTATAG
66 TTTCCAAATCTACATCACTATAG
* *
64498871 ATTCATCAAGGTTCGTTTACATAATTTATTCACTATTTAATTCCCTTCCTACTATTTTTAGTGAT
1 ATTCATCAAGGTTCGTTTACATAATTTATTCACTATTTAATTCCATTCCTACTAGTTTTAGTGAT
64498936 TTTCCAAATCTACATCACT
66 TTTCCAAATCTACATCACT
64498955 GCTGCTGTCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
88 82 1.00
ACGTcount: A:0.28, C:0.20, G:0.07, T:0.44
Consensus pattern (88 bp):
ATTCATCAAGGTTCGTTTACATAATTTATTCACTATTTAATTCCATTCCTACTAGTTTTAGTGAT
TTTCCAAATCTACATCACTATAG
Found at i:64505129 original size:58 final size:58
Alignment explanation
Indices: 64505039--64505154 Score: 223
Period size: 58 Copynumber: 2.0 Consensus size: 58
64505029 GGCTCCAATA
*
64505039 CTGATGCCGTTTGTTTCTATAGAAACTAGACTCAGAGAGGAATCTATACATATATGGT
1 CTGATGCCGTTTGTTTCTATAGAAACTAGACTCAGAGAAGAATCTATACATATATGGT
64505097 CTGATGCCGTTTGTTTCTATAGAAACTAGACTCAGAGAAGAATCTATACATATATGGT
1 CTGATGCCGTTTGTTTCTATAGAAACTAGACTCAGAGAAGAATCTATACATATATGGT
64505155 ATGACTCCTA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.33
Consensus pattern (58 bp):
CTGATGCCGTTTGTTTCTATAGAAACTAGACTCAGAGAAGAATCTATACATATATGGT
Found at i:64506545 original size:691 final size:691
Alignment explanation
Indices: 64505224--64506605 Score: 2656
Period size: 691 Copynumber: 2.0 Consensus size: 691
64505214 CCAGAAACCG
* * * * *
64505224 TTCTGGCCCTGTTTCACGAGAACTTTAATATCTCTTAATATACTGTTCATATGATTGTTTCGTTA
1 TTCTGGCCCTGTCTCACGAGAACCTGAATATCTCTTAACATACTGTCCATATGATTGTTTCGTTA
64505289 CTTTCATATGAAAATAGATTCATCAAGGTTCGAGTACATAATTTATTCACTATTTAATTCCATTC
66 CTTTCATATGAAAATAGATTCATCAAGGTTCGAGTACATAATTTATTCACTATTTAATTCCATTC
64505354 CTACAAATTTTTGTGATTTTTTAAATCCACACCACTGCTGCTGTCAGCATCTGTTTTCAAGGTAA
131 CTACAAATTTTTGTGATTTTTTAAATCCACACCACTGCTGCTGTCAGCATCTGTTTTCAAGGTAA
64505419 ACTTTACCTATTTCGTGGTTACCATGGACCAACTAGGGTTTTGTCATCCATAGGTCCACATATGA
196 ACTTTACCTATTTCGTGGTTACCATGGACCAACTAGGGTTTTGTCATCCATAGGTCCACATATGA
64505484 TCATATTTAGCCATTCCAATGGCTGATCATTTGCCCAACACTTCCATTCCAAACCATAGTCACAT
261 TCATATTTAGCCATTCCAATGGCTGATCATTTGCCCAACACTTCCATTCCAAACCATAGTCACAT
64505549 CGTGAAACCATATATACATACATAAACACAAATGGTCTAATGCCATACTCCACTTCTACGAGCCA
326 CGTGAAACCATATATACATACATAAACACAAATGGTCTAATGCCATACTCCACTTCTACGAGCCA
64505614 TTTTCGCATGGCTTTACACACATACATCACAAAAAGTACTTAAACAACAGGGGGTAGTCCTATAC
391 TTTTCGCATGGCTTTACACACATACATCACAAAAAGTACTTAAACAACAGGGGGTAGTCCTATAC
64505679 ATGCCATATCCAGAGTTCAACTAAAAGAGTACCAAAAGAGCTTTGATAGTGTGGATGACTTCGAC
456 ATGCCATATCCAGAGTTCAACTAAAAGAGTACCAAAAGAGCTTTGATAGTGTGGATGACTTCGAC
64505744 TTCGCTGATCCCGAATCCGATAGCTAACGAACAAAATCTTATCGTTCGGTTTAGTCGAGCGTATT
521 TTCGCTGATCCCGAATCCGATAGCTAACGAACAAAATCTTATCGTTCGGTTTAGTCGAGCGTATT
64505809 AATAGAATTTATTACAGCACCAAGCGCTCACATTCAAACCCAAGTCTCTTCGGTATTTAACCGGA
586 AATAGAATTTATTACAGCACCAAGCGCTCACATTCAAACCCAAGTCTCTTCGGTATTTAACCGGA
64505874 TATAGCCGCAAACACATTTGCCTTCGGGTCTTAACCCGGAC
651 TATAGCCGCAAACACATTTGCCTTCGGGTCTTAACCCGGAC
*
64505915 TTCTGGCCCTGTCTCACGAGAACCTGAATATCTCTTAACATACTGTCCGTATGATTGTTTCGTTA
1 TTCTGGCCCTGTCTCACGAGAACCTGAATATCTCTTAACATACTGTCCATATGATTGTTTCGTTA
* * * * **
64505980 CTTTCCTATGAAAGTAGATTCATCAGGGTTTGTTTACATAATTTATTCACTATTTAATTCCATTC
66 CTTTCATATGAAAATAGATTCATCAAGGTTCGAGTACATAATTTATTCACTATTTAATTCCATTC
64506045 CTACAAATTTTTGTGATTTTTTAAATCCACACCACTGCTGCTGTCAGCATCTGTTTTCAAGGTAA
131 CTACAAATTTTTGTGATTTTTTAAATCCACACCACTGCTGCTGTCAGCATCTGTTTTCAAGGTAA
64506110 ACTTTACCTATTTCGTGGTTACCATGGACCAACTAGGGTTTTGTCATCCATAGGTCCACATATGA
196 ACTTTACCTATTTCGTGGTTACCATGGACCAACTAGGGTTTTGTCATCCATAGGTCCACATATGA
64506175 TCATATTTAGCCATTCCAATGGCTGATCATTTGCCCAACACTTCCATTCCAAACCATAGTCACAT
261 TCATATTTAGCCATTCCAATGGCTGATCATTTGCCCAACACTTCCATTCCAAACCATAGTCACAT
64506240 CGTGAAACCATATATACATACATAAACACAAATGGTCTAATGCCATACTCCACTTCTACGAGCCA
326 CGTGAAACCATATATACATACATAAACACAAATGGTCTAATGCCATACTCCACTTCTACGAGCCA
64506305 TTTTCGCATGGCTTTACACACATACATCACAAAAAGTACTTAAACAACAGGGGGTAGTCCTATAC
391 TTTTCGCATGGCTTTACACACATACATCACAAAAAGTACTTAAACAACAGGGGGTAGTCCTATAC
64506370 ATGCCATATCCAGAGTTCAACTAAAAGAGTACCAAAAGAGCTTTGATAGTGTGGATGACTTCGAC
456 ATGCCATATCCAGAGTTCAACTAAAAGAGTACCAAAAGAGCTTTGATAGTGTGGATGACTTCGAC
64506435 TTCGCTGATCCCGAATCCGATAGCTAACGAACAAAATCTTATCGTTCGGTTTAGTCGAGCGTATT
521 TTCGCTGATCCCGAATCCGATAGCTAACGAACAAAATCTTATCGTTCGGTTTAGTCGAGCGTATT
64506500 AATAGAATTTATTACAGCACCAAGCGCTCACATTCAAACCCAAGTCTCTTCGGTATTTAACCGGA
586 AATAGAATTTATTACAGCACCAAGCGCTCACATTCAAACCCAAGTCTCTTCGGTATTTAACCGGA
64506565 TATAGCCGCAAACACATTTGCCTTCGGGTCTTAACCCGGAC
651 TATAGCCGCAAACACATTTGCCTTCGGGTCTTAACCCGGAC
64506606 ATATCAACTT
Statistics
Matches: 679, Mismatches: 12, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
691 679 1.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (691 bp):
TTCTGGCCCTGTCTCACGAGAACCTGAATATCTCTTAACATACTGTCCATATGATTGTTTCGTTA
CTTTCATATGAAAATAGATTCATCAAGGTTCGAGTACATAATTTATTCACTATTTAATTCCATTC
CTACAAATTTTTGTGATTTTTTAAATCCACACCACTGCTGCTGTCAGCATCTGTTTTCAAGGTAA
ACTTTACCTATTTCGTGGTTACCATGGACCAACTAGGGTTTTGTCATCCATAGGTCCACATATGA
TCATATTTAGCCATTCCAATGGCTGATCATTTGCCCAACACTTCCATTCCAAACCATAGTCACAT
CGTGAAACCATATATACATACATAAACACAAATGGTCTAATGCCATACTCCACTTCTACGAGCCA
TTTTCGCATGGCTTTACACACATACATCACAAAAAGTACTTAAACAACAGGGGGTAGTCCTATAC
ATGCCATATCCAGAGTTCAACTAAAAGAGTACCAAAAGAGCTTTGATAGTGTGGATGACTTCGAC
TTCGCTGATCCCGAATCCGATAGCTAACGAACAAAATCTTATCGTTCGGTTTAGTCGAGCGTATT
AATAGAATTTATTACAGCACCAAGCGCTCACATTCAAACCCAAGTCTCTTCGGTATTTAACCGGA
TATAGCCGCAAACACATTTGCCTTCGGGTCTTAACCCGGAC
Found at i:64506626 original size:40 final size:40
Alignment explanation
Indices: 64506582--64507409 Score: 1602
Period size: 40 Copynumber: 20.7 Consensus size: 40
64506572 GCAAACACAT
* *
64506582 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
64506622 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
64506662 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
64506702 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
64506742 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
64506782 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
64506822 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
64506862 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
64506902 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
64506942 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
64506982 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
64507022 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
64507062 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
64507102 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
64507142 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
64507182 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
64507222 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
64507262 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
*
64507302 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
* * *
64507342 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCGTAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
64507382 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
64507410 TCCAATGCTC
Statistics
Matches: 782, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 782 1.00
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.32
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
Found at i:64510906 original size:25 final size:25
Alignment explanation
Indices: 64510878--64510945 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
64510868 CTAGAATCAT
** *
64510878 AATCAGAATCAGAATTTGGTGACAG
1 AATCAGAATCAGAATCAGGTAACAG
* *
64510903 AATCAGAATCAGTATCAGGTAATAG
1 AATCAGAATCAGAATCAGGTAACAG
*
64510928 AATCAAAATCAGAATCAG
1 AATCAGAATCAGAATCAG
64510946 TATCAGGTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.46, C:0.13, G:0.19, T:0.22
Consensus pattern (25 bp):
AATCAGAATCAGAATCAGGTAACAG
Found at i:64510909 original size:6 final size:6
Alignment explanation
Indices: 64510900--64510974 Score: 55
Period size: 6 Copynumber: 12.0 Consensus size: 6
64510890 AATTTGGTGA
* * *
64510900 CAGAAT CAGAAT CAGTAT CAGGTAAT -AGAAT CAAAAT CAGAAT CAGTAT
1 CAGAAT CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT CAGAAT CAGAAT
*
64510949 CAGGTAA- CAGAAT CAAAAAT CAGAAT
1 CA-G-AAT CAGAAT C-AGAAT CAGAAT
64510975 GTGAATGCAA
Statistics
Matches: 54, Mismatches: 8, Indels: 14
0.71 0.11 0.18
Matches are distributed among these distances:
5 5 0.09
6 36 0.67
7 10 0.19
8 3 0.06
ACGTcount: A:0.49, C:0.15, G:0.16, T:0.20
Consensus pattern (6 bp):
CAGAAT
Found at i:64510938 original size:31 final size:32
Alignment explanation
Indices: 64510903--64510974 Score: 128
Period size: 31 Copynumber: 2.3 Consensus size: 32
64510893 TTGGTGACAG
*
64510903 AATCAGAATCAGTATCAGGTAATAGAATC-AA
1 AATCAGAATCAGTATCAGGTAACAGAATCAAA
64510934 AATCAGAATCAGTATCAGGTAACAGAATCAAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAAA
64510966 AATCAGAAT
1 AATCAGAAT
64510975 GTGAATGCAA
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
31 28 0.72
32 11 0.28
ACGTcount: A:0.50, C:0.14, G:0.15, T:0.21
Consensus pattern (32 bp):
AATCAGAATCAGTATCAGGTAACAGAATCAAA
Found at i:64510962 original size:25 final size:25
Alignment explanation
Indices: 64510878--64510963 Score: 73
Period size: 25 Copynumber: 3.2 Consensus size: 25
64510868 CTAGAATCAT
* ** *
64510878 AATCAGAATCAGAATTTGGTGACAG
1 AATCAGAATCAGTATCAGGTAACAG
*
64510903 AATCAGAATCAGTATCAGGTAATAGAATCAA
1 AATCAGAATCAGTATCAGG---T--AA-CAG
64510934 AATCAGAATCAGTATCAGGTAACAG
1 AATCAGAATCAGTATCAGGTAACAG
64510959 AATCA
1 AATCA
64510964 AAAATCAGAA
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
25 23 0.47
26 2 0.04
28 2 0.04
30 1 0.02
31 21 0.43
ACGTcount: A:0.45, C:0.14, G:0.19, T:0.22
Consensus pattern (25 bp):
AATCAGAATCAGTATCAGGTAACAG
Found at i:64511154 original size:27 final size:26
Alignment explanation
Indices: 64511111--64511212 Score: 123
Period size: 27 Copynumber: 3.8 Consensus size: 26
64511101 GCTCAGTTAT
* *
64511111 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
*
64511138 CAGATATTGTGGTAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
64511164 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
64511192 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
64511213 TTAATAGAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 7 0.11
27 51 0.77
28 8 0.12
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:64511405 original size:22 final size:22
Alignment explanation
Indices: 64511371--64511435 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
64511361 GCAAATACGT
*
64511371 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* * *
64511393 TTGGCATAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
64511415 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
64511436 AAGGCTTTAA
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:64511798 original size:27 final size:27
Alignment explanation
Indices: 64511767--64511920 Score: 182
Period size: 27 Copynumber: 5.7 Consensus size: 27
64511757 TCATATACCA
* *
64511767 ACAGGGGTATTTCAGTAATTCTACGCT
1 ACAGGGGTATTTCGGTAATTCTACCCT
64511794 ACAGGGGTATTTCGGTAATTCTACCCT
1 ACAGGGGTATTTCGGTAATTCTACCCT
* * *
64511821 ACAAGGGTATTCCGGTAATTTTACCCT
1 ACAGGGGTATTTCGGTAATTCTACCCT
* * * * *
64511848 ACAGAGGTATTCCGATAATTCCATCCT
1 ACAGGGGTATTTCGGTAATTCTACCCT
* * *
64511875 ATAGAGGTATTTCGGTATTTCTACCCT
1 ACAGGGGTATTTCGGTAATTCTACCCT
*
64511902 ACAAGGGTATTTCGGTAAT
1 ACAGGGGTATTTCGGTAAT
64511921 GGTAAAACGG
Statistics
Matches: 106, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 106 1.00
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (27 bp):
ACAGGGGTATTTCGGTAATTCTACCCT
Found at i:64512186 original size:107 final size:107
Alignment explanation
Indices: 64512026--64512295 Score: 418
Period size: 107 Copynumber: 2.5 Consensus size: 107
64512016 TTCACAAATC
* ** *
64512026 AGGGATATTTT-GATAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGTGGTATTT
1 AGGG-TATTTTAG-TAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAG-GATATTT
*
64512090 TGGTAATTTTATAAACCAGGGGTATTTTGGTAATTTTATAAACAA
63 TGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAA
* *
64512135 AGGGTA-TTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAACCAAGGATATTTTG
1 AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACC-AGGATATTTTG
64512199 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAA
65 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAA
*
64512242 AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTTGTAATTTTGTAAACCA
1 AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCA
64512296 AAGTATTCTA
Statistics
Matches: 148, Mismatches: 10, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
107 96 0.65
108 48 0.32
109 4 0.03
ACGTcount: A:0.34, C:0.08, G:0.19, T:0.40
Consensus pattern (107 bp):
AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAGGATATTTTGG
TAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAA
Found at i:64512293 original size:27 final size:27
Alignment explanation
Indices: 64511947--64512287 Score: 346
Period size: 27 Copynumber: 12.7 Consensus size: 27
64511937 TGTAAATCAA
* **
64511947 GGGTACTTTGGTAATTTTACAAGTC-G
1 GGGTATTTTGGTAATTTTACAAACCAG
*** **
64511973 AGGGTATTTCAATAATTTTACAAGTC-G
1 -GGGTATTTTGGTAATTTTACAAACCAG
** * *
64512000 AGGGTATTTCAGTAATTTCACAAATCAG
1 -GGGTATTTTGGTAATTTTACAAACCAG
* * *
64512028 GGATATTTTGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
64512055 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
64512082 TGGTATTTTGGTAATTTTATAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
64512109 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
64512136 GGGTA-TTTAGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
64512162 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
64512189 GGATATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
64512216 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
64512243 GGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
64512270 GGGTATTTTTGTAATTTT
1 GGGTATTTTGGTAATTTT
64512288 GTAAACCAAA
Statistics
Matches: 271, Mismatches: 41, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
26 23 0.08
27 247 0.91
28 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:64513254 original size:22 final size:22
Alignment explanation
Indices: 64513229--64513271 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
64513219 TGAGCTAATA
64513229 AACGGTAAGCTCCGAAAAGCTT
1 AACGGTAAGCTCCGAAAAGCTT
* *
64513251 AACGGTAAGCTTCGTAAAGCT
1 AACGGTAAGCTCCGAAAAGCT
64513272 GAAACAGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (22 bp):
AACGGTAAGCTCCGAAAAGCTT
Found at i:64516803 original size:29 final size:29
Alignment explanation
Indices: 64516760--64516833 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
64516750 TAATCAACCG
* *
64516760 CGCACACTTATTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
64516789 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
64516818 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
64516834 AACTCACAAC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 3 0.08
29 36 0.92
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:64518627 original size:28 final size:28
Alignment explanation
Indices: 64518564--64518773 Score: 377
Period size: 28 Copynumber: 7.5 Consensus size: 28
64518554 ATATTAAGTC
* *
64518564 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
64518591 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
64518619 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
64518647 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
64518675 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
64518703 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
64518731 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
64518759 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
64518774 GTACAATTTA
Statistics
Matches: 178, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
27 21 0.12
28 157 0.88
ACGTcount: A:0.34, C:0.28, G:0.11, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:64519773 original size:46 final size:46
Alignment explanation
Indices: 64519723--64519898 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
64519713 TGGTTGAGCA
* * *
64519723 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * *
64519769 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--A--CG
* *
64519816 TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * * *
64519862 CCCGAGCTCGTTGAGTTGAGTCCGATTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
64519899 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 28 0.26
48 3 0.03
50 6 0.06
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
Found at i:64519879 original size:93 final size:93
Alignment explanation
Indices: 64519720--64519891 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
64519710 GGATGGTTGA
* * *
64519720 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
64519785 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* ** *
64519813 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
*
64519878 TGAGTCCGATTTCG
66 TGAGTCCGAGTTCG
64519892 CTTATGGGCG
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:64526508 original size:32 final size:32
Alignment explanation
Indices: 64526456--64526517 Score: 74
Period size: 32 Copynumber: 1.9 Consensus size: 32
64526446 TTGATTGCAT
* *
64526456 ACTGTACTGATTCTGTAAT-GGCTTAGGCCCC
1 ACTGTACTGATTCTGAAATGGGCTCAGGCCCC
64526487 ACTGATACTG-TTACTGAAATGGGCTCAGGCC
1 ACTG-TACTGATT-CTGAAATGGGCTCAGGCC
64526518 TACACTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
31 6 0.23
32 11 0.42
33 9 0.35
ACGTcount: A:0.23, C:0.24, G:0.24, T:0.29
Consensus pattern (32 bp):
ACTGTACTGATTCTGAAATGGGCTCAGGCCCC
Found at i:64527220 original size:22 final size:22
Alignment explanation
Indices: 64527195--64527237 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
64527185 GCTGATAAAT
64527195 GGTAAGCTCTGAAGAGCTGAAC
1 GGTAAGCTCTGAAGAGCTGAAC
*
64527217 GGTAAGCTCTGTAGAGCTGAA
1 GGTAAGCTCTGAAGAGCTGAA
64527238 ACAAGAATGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.16, G:0.33, T:0.21
Consensus pattern (22 bp):
GGTAAGCTCTGAAGAGCTGAAC
Found at i:64531014 original size:40 final size:40
Alignment explanation
Indices: 64530970--64531065 Score: 140
Period size: 40 Copynumber: 2.4 Consensus size: 40
64530960 CAGTTATTTG
64530970 TGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATATA
1 TGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATATA
* * *
64531010 TGGCACTTAGTGTGCGATTTGAGATAGCTTCGGCTATGTA
1 TGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATATA
* *
64531050 CGACACTTAGT-TGCGA
1 TGGCACTTAGTGTGCGA
64531066 GATATCGAGT
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
39 5 0.10
40 46 0.90
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATATA
Found at i:64540994 original size:79 final size:81
Alignment explanation
Indices: 64540894--64541077 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 81
64540884 GCTCCTCATT
* *
64540894 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
*
64540956 CGGAT-TTAGTAAC-TCGCA
63 CGGATATT-GTAACTTAGCA
**
64540974 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
*
64541038 ATATTGTCACTTAGCA
66 ATATTGTAACTTAGCA
64541054 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64541078 CATCATTCAA
Statistics
Matches: 92, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
78 14 0.15
79 56 0.61
80 22 0.24
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATTGTAACTTAGCA
Found at i:64541011 original size:39 final size:41
Alignment explanation
Indices: 64540894--64541077 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 41
64540884 GCTCCTCATT
* *
64540894 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAATCTCGCA
* *
64540934 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAA-CTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
64540974 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
* * *
64541013 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAATC-TCGCA
64541054 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64541078 CATCATTCAA
Statistics
Matches: 128, Mismatches: 7, Indels: 19
0.83 0.05 0.12
Matches are distributed among these distances:
38 3 0.02
39 48 0.38
40 66 0.52
41 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
Found at i:64550064 original size:40 final size:40
Alignment explanation
Indices: 64549778--64550118 Score: 384
Period size: 40 Copynumber: 8.5 Consensus size: 40
64549768 AGCTTGATTA
* * * *
64549778 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* ** * *
64549818 CTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
*
64549858 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* * *
64549898 CTCCTCGGGACTTAGCCCGGATATATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* *
64549938 CTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* *
64549978 CTCTTCGGGACTTAGCCCGGATACATCGCTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
** * * *
64550018 CTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATG
1 CTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAATG
* ** *
64550059 C-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AAAG
1 CTCTTCGGGA-CTTAGCCCGGATA-CATCAC-TAGCACGAATG
64550099 C-CTTCGGGACTTAGCCCGGA
1 CTCTTCGGGACTTAGCCCGGA
64550119 CATCATTCGA
Statistics
Matches: 259, Mismatches: 37, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
39 3 0.01
40 237 0.92
41 19 0.07
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
Found at i:64550463 original size:29 final size:29
Alignment explanation
Indices: 64550424--64550502 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
64550414 CTTAATAATC
*
64550424 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
64550454 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
64550483 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
64550503 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:64552460 original size:37 final size:37
Alignment explanation
Indices: 64552400--64552477 Score: 120
Period size: 37 Copynumber: 2.1 Consensus size: 37
64552390 TATTACGAAA
* * *
64552400 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
*
64552437 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
64552474 TCTT
1 TCTT
64552478 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
Found at i:64552674 original size:47 final size:47
Alignment explanation
Indices: 64552596--64552928 Score: 558
Period size: 47 Copynumber: 7.1 Consensus size: 47
64552586 CCCTTCGGGA
* * * * * *
64552596 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64552643 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64552690 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64552737 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64552784 CTTATCACATATATACACTCTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64552831 CTTATCACATATATACACTCTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64552878 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64552925 CTTA
1 CTTA
64552929 CTATCATTTC
Statistics
Matches: 272, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 272 1.00
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:64557111 original size:48 final size:47
Alignment explanation
Indices: 64557056--64557565 Score: 228
Period size: 48 Copynumber: 10.6 Consensus size: 47
64557046 AGTGATTTGC
* * *
64557056 TGATGCCATGTTCCAAACATGGTCTTACACCAGCT-TAAATGTCGAGGG
1 TGATGCCATGTCCCAAACATGGTCTTACACCAGCTCT-AATCTC-AAGG
* * * *
64557104 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAATG
1 TGATGCCATGTCCCAAACATGGTCTTACACCAGCTCTAATCTCAAGG
* * * * *
64557151 TCGATGCCATGTCCCAAACACGGTCTTACACTAGCAC-ACATGTCAATGC
1 T-GATGCCATGTCCCAAACATGGTCTTACACCAGCTCTA-ATCTCAA-GG
* * * ** * *
64557200 CGATGCCATGTCACAGACATGGTCTTACACTGGCTCTCGTAATGTC-A-C
1 TGATGCCATGTCCCAAACATGGTCTTACACCAG--CTC-TAATCTCAAGG
* * * * * ** *
64557248 CGATGCTATGTCCTAGACATGGTCTTACACTAGCTCTTGTCTCAATGC
1 TGATGCCATGTCCCAAACATGGTCTTACACCAGCTCTAATCTCAA-GG
* * * * *
64557296 CGATGCCATGTCCCAAACATGGTCTTACACTAGCAC-ACATGTCAATGC
1 TGATGCCATGTCCCAAACATGGTCTTACACCAGCTCTA-ATCTCAA-GG
* * * * ** * * **
64557344 CGATGTCATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-GTGG
1 TGATGCCATGTCCCAAACATGGTCTTACACCAGCTCTAAT-CTCAAGG
* * * * *
64557391 CTGATGTCATGTCCCAAACATGGTCTTACACTAGCAC-ACATGTCAATG
1 -TGATGCCATGTCCCAAACATGGTCTTACACCAGCTCTA-ATCTCAAGG
* * * * *
64557439 TCGATGCCAGGTCCCAAACATGGTCTTCCACTAGCTCTCA-C-CAAATCGC
1 T-GATGCCATGTCCCAAACATGGTCTTACACCAGCTCTAATCTC-AA--GG
* * * ** * **
64557488 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTTGTATCGTGG
1 TGATGCCATGTCCCAAACATGGTCTTACACCAGCTCTAATCTCAAGG
* *
64557535 CTGACGCCATGTCCCAAACATAGTCTTACAC
1 -TGATGCCATGTCCCAAACATGGTCTTACAC
64557566 TAGCACACAT
Statistics
Matches: 361, Mismatches: 76, Indels: 50
0.74 0.16 0.10
Matches are distributed among these distances:
45 4 0.01
46 5 0.01
47 9 0.02
48 331 0.92
49 2 0.01
50 4 0.01
51 5 0.01
52 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (47 bp):
TGATGCCATGTCCCAAACATGGTCTTACACCAGCTCTAATCTCAAGG
Found at i:64557221 original size:96 final size:95
Alignment explanation
Indices: 64557057--64557575 Score: 467
Period size: 96 Copynumber: 5.4 Consensus size: 95
64557047 GTGATTTGCT
* * * * * * ** *
64557057 GATGCCATGTTCCAAACATGGTCTTACACCAGCTTAAATGTCGAGGGTGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACAT-TCAATGCCGATGCCATGTCCCAAAC
*
64557122 ATGGTCTTACACTAGCTCTCATCTCAATGTC
65 ATGGTCTTACACTAGCTCTCATGTCAATGTC
* * * *
64557153 GATGCCATGTCCCAAACACGGTCTTACACTAGCACACATGTCAATGCCGATGCCATGTCACAGAC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACAT-TCAATGCCGATGCCATGTCCCAAAC
*
64557218 ATGGTCTTACACTGGCTCTC--GT-AATGTCACC
65 ATGGTCTTACACTAGCTCTCATGTCAATGT---C
* * * ***
64557249 GATGCTATGTCCTAGACATGGTCTTACACTAGCTCTTGTCTCAATGCCGATGCCATGTCCCAAAC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACAT-TCAATGCCGATGCCATGTCCCAAAC
* * *
64557314 ATGGTCTTACACTAGCACACATGTCAATGCC
65 ATGGTCTTACACTAGCTCTCATGTCAATGTC
* * * * * * *
64557345 GATGTCATGTCCTAGACATGGTCTTACACTGGCTCTCA-T-AATGTGGCTGATGTCATGTCCCAA
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATTCAA--T-GCCGATGCCATGTCCCAA
* *
64557408 ACATGGTCTTACACTAGCACACATGTCAATGTC
63 ACATGGTCTTACACTAGCTCTCATGTCAATGTC
* * * * *
64557441 GATGCCAGGTCCCAAACATGGTCTTCCACTAGCTCTCA-CCAAATCGCCGATGCCATGTTCCAAA
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATTC-AAT-GCCGATGCCATGTCCCAAA
** * * *
64557505 CATGGTCTTACACTAGCTCTTGTATC-GTGGC
64 CATGGTCTTACACTAGCTCTCATGTCAATGTC
* * *
64557536 TGACGCCATGTCCCAAACATAGTCTTACACTAGCACACAT
1 -GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACAT
64557576 ATCATCAAAA
Statistics
Matches: 350, Mismatches: 60, Indels: 25
0.80 0.14 0.06
Matches are distributed among these distances:
93 7 0.02
94 2 0.01
95 4 0.01
96 329 0.94
98 4 0.01
99 4 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (95 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATTCAATGCCGATGCCATGTCCCAAACA
TGGTCTTACACTAGCTCTCATGTCAATGTC
Found at i:64557535 original size:144 final size:142
Alignment explanation
Indices: 64557057--64557575 Score: 589
Period size: 144 Copynumber: 3.6 Consensus size: 142
64557047 GTGATTTGCT
* *
64557057 GATGCCATGTTCCAAACATGGTCTTACACCAGCT-T-A-AATGTCGAGGGTGATGCCATGTCCCA
1 GATGCCATG-TCCAAACATGGTCTTACACTAGCTCTCATAATGT---GGCTGATGCCATGTCCCA
* * * *
64557119 GACATGGTCTTACACTAGCTCTCATCTCAATGTCGATGCCATGTCCCAAACACGGTCTTACACTA
62 AACATGGTCTTACACTAGCACACATCTCAATGTCGATGCCATGTCCCAAACATGGTCTTACACTA
64557184 GCACACATGTCAATGCC
127 GCACACA-GTCAATGCC
* * * ** * * * *
64557201 GATGCCATGTCACAGACATGGTCTTACACTGGCTCTCGTAATGTCACCGATGCTATGTCCTAGAC
1 GATGCCATGTC-CAAACATGGTCTTACACTAGCTCTCATAATGTGGCTGATGCCATGTCCCAAAC
* *** *
64557266 ATGGTCTTACACTAGCTCTTGTCTCAATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCA
65 ATGGTCTTACACTAGCACACATCTCAATGTCGATGCCATGTCCCAAACATGGTCTTACACTAGCA
64557331 CACATGTCAATGCC
130 CACA-GTCAATGCC
* * * *
64557345 GATGTCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGTCATGTCCCAAAC
1 GATGCCATGTCC-AAACATGGTCTTACACTAGCTCTCATAATGTGGCTGATGCCATGTCCCAAAC
* * * *
64557410 ATGGTCTTACACTAGCACACATGTCAATGTCGATGCCAGGTCCCAAACATGGTCTTCCACTAGCT
65 ATGGTCTTACACTAGCACACATCTCAATGTCGATGCCATGTCCCAAACATGGTCTTACACTAGCA
* *
64557475 CTCA-CCAAATCGCC
130 CACAGTC-AAT-GCC
** *
64557489 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTTGT-ATCGTGGCTGACGCCATGTCCCAAA
1 GATGCCATG-TCCAAACATGGTCTTACACTAGCTCTCATAAT-GTGGCTGATGCCATGTCCCAAA
*
64557553 CATAGTCTTACACTAGCACACAT
64 CATGGTCTTACACTAGCACACAT
64557576 ATCATCAAAA
Statistics
Matches: 324, Mismatches: 42, Indels: 18
0.84 0.11 0.05
Matches are distributed among these distances:
142 1 0.00
143 8 0.02
144 306 0.94
145 4 0.01
147 5 0.02
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (142 bp):
GATGCCATGTCCAAACATGGTCTTACACTAGCTCTCATAATGTGGCTGATGCCATGTCCCAAACA
TGGTCTTACACTAGCACACATCTCAATGTCGATGCCATGTCCCAAACATGGTCTTACACTAGCAC
ACAGTCAATGCC
Found at i:64562506 original size:42 final size:42
Alignment explanation
Indices: 64562459--64562565 Score: 108
Period size: 43 Copynumber: 2.5 Consensus size: 42
64562449 TTTTGCGTAT
* *
64562459 GACCATATCTGGGATATGGCATCGATATGACATTTCATGTAA
1 GACCATATCTGGGATATGGCATCGACATGACATTACATGTAA
*** ** * *
64562501 GACCATAGT-TGTTCTATTGGCGGCGGCATGAGATTACATGTAA
1 GACCATA-TCTGGGATA-TGGCATCGACATGACATTACATGTAA
64562544 GACCATATCTGGGATATGGCAT
1 GACCATATCTGGGATATGGCAT
64562566 TGGTATGGTA
Statistics
Matches: 48, Mismatches: 14, Indels: 6
0.71 0.21 0.09
Matches are distributed among these distances:
42 16 0.33
43 32 0.67
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (42 bp):
GACCATATCTGGGATATGGCATCGACATGACATTACATGTAA
Found at i:64570527 original size:21 final size:20
Alignment explanation
Indices: 64570501--64570540 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
64570491 TGAAATGTGT
64570501 GAATAT-ATATAAGCTATGGCC
1 GAATATGAT-TAAGCT-TGGCC
64570522 GAATATGATTAAGCTTGGC
1 GAATATGATTAAGCTTGGC
64570541 TATTATATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 12 0.67
22 2 0.11
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.30
Consensus pattern (20 bp):
GAATATGATTAAGCTTGGCC
Found at i:64578422 original size:49 final size:49
Alignment explanation
Indices: 64578302--64579003 Score: 1067
Period size: 49 Copynumber: 14.6 Consensus size: 49
64578292 CCCTTCGGGA
* * * * *
64578302 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGG-
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64578348 CTCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CT-TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64578396 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64578445 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64578494 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64578543 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGG--CCATTAGGC
* *
64578594 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64578641 CTTAT-A-ACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64578688 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64578737 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64578786 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATT-AGGC
*
64578835 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64578882 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64578931 CTTATCAC--ATATATACACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64578978 CTTATCACATATATATACA--TTCACAT
1 CTTATCACATATATATACACTTTCACAT
64579004 CACAATTATC
Statistics
Matches: 610, Mismatches: 28, Indels: 35
0.91 0.04 0.05
Matches are distributed among these distances:
46 5 0.01
47 189 0.31
48 3 0.00
49 398 0.65
51 15 0.02
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:64578677 original size:194 final size:191
Alignment explanation
Indices: 64578302--64579003 Score: 1049
Period size: 194 Copynumber: 3.6 Consensus size: 191
64578292 CCCTTCGGGA
* * * * * *
64578302 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGG-CTCTGTCACATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGTCT-TATCACATATATA
*
64578364 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACACTTTCACATTCATC
65 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATC
* * *
64578429 ACATCGGCCATTAGGTCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGT
129 ACATCGGCCATTAGGCCTTAT-A-ACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64578494 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGTCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGTCTTATCAC--ATATAT
*
64578559 ACACTTTCACATTCATCACATCGGCCCCATTAGGCCTCATCAC-ATATATACACTTTCACATTCA
64 ACACTTTCACATTCATCACATCGG--CCATTAGGCCTTATCACAATATATACACTTTCACATTCA
*
64578623 TCACATCGGCTATTAGGCCTTATAACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
127 TCACATCGGCCATTAGGCCTTATAACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64578688 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGTCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGTCTTATCAC--ATATAT
* *
64578753 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCAT
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCAT
* * *
64578818 CACATTGGCCATTCA-GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
128 CACATCGGCCATT-AGGCCTTATAACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
64578882 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGTCTTATCACATATATAC
*
64578947 ACTTTCACATTCATCACATGGGCCATTAGGCCTTATCACATATATATACA--TTCACAT
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACAT
64579004 CACAATTATC
Statistics
Matches: 476, Mismatches: 24, Indels: 22
0.91 0.05 0.04
Matches are distributed among these distances:
190 7 0.01
192 81 0.17
193 1 0.00
194 296 0.62
195 4 0.01
196 72 0.15
198 15 0.03
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (191 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGTCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCAC
ATCGGCCATTAGGCCTTATAACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:64584832 original size:40 final size:40
Alignment explanation
Indices: 64584788--64584903 Score: 207
Period size: 40 Copynumber: 2.9 Consensus size: 40
64584778 GGACTAAGAT
64584788 CCGAAGGCAATT-GTGCGGGTTATTATAACCGGGTTAAGTC
1 CCGAAGGC-ATTCGTGCGGGTTATTATAACCGGGTTAAGTC
*
64584828 CCGAAGGTATTCGTGCGGGTTATTATAACCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTC
64584868 CCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTA
1 CCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTA
64584904 TGTAACGTCC
Statistics
Matches: 73, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
39 3 0.04
40 70 0.96
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTC
Found at i:64586336 original size:47 final size:49
Alignment explanation
Indices: 64586219--64586393 Score: 183
Period size: 45 Copynumber: 3.8 Consensus size: 49
64586209 AACCCGCCCC
* * *
64586219 TAAGTGAACTCGGACTCAACTCAACGAGCTC-G--G-C-GTTCGCATCCA
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTT-ACATCCA
*
64586264 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AGTTACATCCA
* * *
64586312 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTTGCATCCA
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACATCCA
*
64586357 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
64586394 TCAACCATCC
Statistics
Matches: 110, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
43 6 0.05
44 2 0.02
45 32 0.29
46 30 0.27
47 29 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (49 bp):
TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACATCCA
Found at i:64586382 original size:93 final size:92
Alignment explanation
Indices: 64586224--64586393 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 92
64586214 GCCCCTAAGT
*
64586224 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
64586289 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
* *
64586316 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
64586381 CGAGTTCGGATGC
65 CGAGTTCGGATGC
64586394 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 27 0.36
93 47 0.64
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:64586846 original size:30 final size:30
Alignment explanation
Indices: 64586812--64586872 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
64586802 CATTTAATAC
64586812 AAACTTTGGAAAAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * *
64586842 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
64586872 A
1 A
64586873 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:64595812 original size:40 final size:40
Alignment explanation
Indices: 64595754--64595941 Score: 141
Period size: 40 Copynumber: 4.7 Consensus size: 40
64595744 CGGATGATAT
* * *
64595754 CCGGACTAAAATCTGAAGGCATTTGTGCTAGTTACTATAA
1 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTATAA
* * * *
64595794 TCGGACTAAGATCCGAAGGCAATTGTGCGGGTTATTATAA
1 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTATAA
** * * *
64595834 CCGGGTTAAG-TCCCGAAGGCATTCGTGCGGGTTATTATAA
1 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTATAA
* * * *
64595874 CCGG-GTAA-AGTCTCGAAGGCATTCGTGCGGGTTATTATAA
1 CCGGACTAAGA-TC-CGAAGGCATTTGTGCGAGTTACTATAA
** *
64595914 CCGGGTTAAG-TCCCGAAGGCATTCGTGC
1 CCGGACTAAGAT-CCGAAGGCATTTGTGC
64595942 TGGTTGTTAC
Statistics
Matches: 127, Mismatches: 14, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 5 0.04
40 118 0.93
41 4 0.03
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:64595970 original size:80 final size:80
Alignment explanation
Indices: 64595807--64595963 Score: 235
Period size: 80 Copynumber: 1.9 Consensus size: 80
64595797 GACTAAGATC
*
64595807 CGAAGGCAATTGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTAT
1 CGAAGGCAATTGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTAC
**
64595872 AACCGGGTAAAGTCT
66 AACCGGCCAAAGTCT
* *
64595887 CGAAGGC-ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTA
1 CGAAGGCAATT-GTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTA
*
64595951 CATCCGAGCCAAA
65 CAACCG-GCCAAA
64595964 TTTCGAAAGT
Statistics
Matches: 69, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
79 3 0.04
80 62 0.90
81 4 0.06
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (80 bp):
CGAAGGCAATTGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTAC
AACCGGCCAAAGTCT
Found at i:64601314 original size:13 final size:13
Alignment explanation
Indices: 64601282--64601316 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
64601272 ATTCACAAAG
64601282 AAATTAAAAATAC
1 AAATTAAAAATAC
64601295 AATATTAAAAATAC
1 AA-ATTAAAAATAC
*
64601309 TAATTAAA
1 AAATTAAA
64601317 TATTAAATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.29
Consensus pattern (13 bp):
AAATTAAAAATAC
Found at i:64606229 original size:20 final size:18
Alignment explanation
Indices: 64606182--64606230 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
64606172 CATGATAAAA
64606182 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
64606199 ATTAAGA-TAATTACTTTAAT
1 ATTAA-ATTAA-TA-TTTAAT
64606219 ATTAAATTAATA
1 ATTAAATTAATA
64606231 AAATACTGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 4 0.15
20 14 0.52
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:64606507 original size:19 final size:18
Alignment explanation
Indices: 64606467--64606514 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
64606457 TCAAAACTCA
*
64606467 TTTCTTCAAATTTTTAAG
1 TTTCTCCAAATTTTTAAG
64606485 TTTCTCCAAATTTTTAAG
1 TTTCTCCAAATTTTTAAG
*
64606503 TTT-TCAAAATTT
1 TTTCTCCAAATTT
64606515 AAAATTTAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
17 8 0.29
18 20 0.71
ACGTcount: A:0.29, C:0.12, G:0.04, T:0.54
Consensus pattern (18 bp):
TTTCTCCAAATTTTTAAG
Found at i:64609241 original size:58 final size:59
Alignment explanation
Indices: 64609176--64609332 Score: 244
Period size: 59 Copynumber: 2.7 Consensus size: 59
64609166 ATTCTTGCCG
**
64609176 GGGAATATTTACTGTTTACACCAGAGAATATTTCCTGTTCACTCATC-TTTTTTTTACA
1 GGGAATATTTACTGTTTATGCCAGAGAATATTTCCTGTTCACTCATCTTTTTTTTTACA
* * **
64609234 GGGAATATTTATTGTTTATGCCAGAGAATATTTCCTGTTCACTCGTCTTTTTTTTTGTA
1 GGGAATATTTACTGTTTATGCCAGAGAATATTTCCTGTTCACTCATCTTTTTTTTTACA
*
64609293 GGGAATATTTACTGTTTATGCCAGAGAATATTTCTTGTTC
1 GGGAATATTTACTGTTTATGCCAGAGAATATTTCCTGTTC
64609333 CTCTTCATTC
Statistics
Matches: 90, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
58 43 0.48
59 47 0.52
ACGTcount: A:0.24, C:0.15, G:0.16, T:0.45
Consensus pattern (59 bp):
GGGAATATTTACTGTTTATGCCAGAGAATATTTCCTGTTCACTCATCTTTTTTTTTACA
Found at i:64613194 original size:15 final size:15
Alignment explanation
Indices: 64613174--64613204 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
64613164 AGATGTTGTA
*
64613174 TGTAATTCGTCTATT
1 TGTAATTCATCTATT
64613189 TGTAATTCATCTATT
1 TGTAATTCATCTATT
64613204 T
1 T
64613205 TGGTAGATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.13, G:0.10, T:0.55
Consensus pattern (15 bp):
TGTAATTCATCTATT
Found at i:64618277 original size:47 final size:47
Alignment explanation
Indices: 64618217--64618562 Score: 317
Period size: 47 Copynumber: 7.4 Consensus size: 47
64618207 GTCCGAACTA
64618217 GTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGCAC
1 GTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGCAC
*** * * *
64618264 GTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATGTCCGAACTA-
1 GTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--TCCGAGC-AC
64618310 GTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGCAC
1 GTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGCAC
*** * * *
64618357 GTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATGTCCGAACTA-
1 GTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--TCCGAGC-AC
64618403 GTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGCAC
1 GTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGCAC
*** * * *
64618450 GTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATGTCCGAACTA-
1 GTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--TCCGAGC-AC
64618496 GTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGCAC
1 GTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGCAC
64618543 GTTGAGTTGAGTCCGAGTTC
1 GTTGAGTTGAGTCCGAGTTC
64618563 ACTTATGGAT
Statistics
Matches: 236, Mismatches: 36, Indels: 54
0.72 0.11 0.17
Matches are distributed among these distances:
43 3 0.01
44 9 0.04
45 3 0.01
46 93 0.39
47 113 0.48
48 3 0.01
49 9 0.04
50 3 0.01
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (47 bp):
GTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGCAC
Found at i:64618317 original size:93 final size:93
Alignment explanation
Indices: 64618158--64618608 Score: 823
Period size: 93 Copynumber: 4.8 Consensus size: 93
64618148 AGGATGTTTG
* *
64618158 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTAGTTGAG
1 GGCATCCGAGCACGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTAGTTGAG
64618223 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
64618251 GGCATCCGAGCACGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTAGTTGAG
1 GGCATCCGAGCACGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTAGTTGAG
64618316 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
64618344 GGCATCCGAGCACGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTAGTTGAG
1 GGCATCCGAGCACGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTAGTTGAG
64618409 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
64618437 GGCATCCGAGCACGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTAGTTGAG
1 GGCATCCGAGCACGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTAGTTGAG
64618502 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
64618530 GGCATCCGAGCACGTTGAGTTGAGTCCGAGTTCACTTATGGATGGGAACGCCCGAGCTCA-TTGA
1 GGCATCCGAGCACGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACT-AGTTGA
*
64618594 GTTGAGTCTGAGTTC
65 GTTGAGTCCGAGTTC
64618609 ACTTATGGGC
Statistics
Matches: 350, Mismatches: 7, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
93 349 1.00
94 1 0.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAGCACGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTAGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:64632042 original size:25 final size:25
Alignment explanation
Indices: 64632013--64632081 Score: 75
Period size: 25 Copynumber: 2.8 Consensus size: 25
64632003 ACTCTTATGT
* **
64632013 GCTTCCCGTTATATAGTTCGGATAA
1 GCTTCCCGTTATATAGCTCACATAA
* * *
64632038 GCTTCCCGTTACATGGCTCACATGA
1 GCTTCCCGTTATATAGCTCACATAA
*
64632063 GCTTCCCGTTATATGGCTC
1 GCTTCCCGTTATATAGCTC
64632082 GAGAGACAGA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.19, C:0.28, G:0.20, T:0.33
Consensus pattern (25 bp):
GCTTCCCGTTATATAGCTCACATAA
Found at i:64642034 original size:48 final size:48
Alignment explanation
Indices: 64641962--64642689 Score: 1240
Period size: 48 Copynumber: 15.0 Consensus size: 48
64641952 CAAGATAAAT
64641962 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
64642010 ATATGTATATGTGGTAAAGTCGAATGGCTAATGTGAATTATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
64642058 ATATGTATATGTGGTAAAGTCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
64642106 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
* *
64642156 ATATGTATATGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
64642204 ATATGTATATGTGGTAAAGTCGAATGGCTAATGTGAATTATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
64642252 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
64642300 ATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
*
64642350 ATATGTATATGTGGTAAAGCCGAATAGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
64642398 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
64642446 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAATTATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
64642494 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
64642542 ATATGTATATGTGGTAAAGCCGAATGGTTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
* *
64642592 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
64642640 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
64642688 AT
1 AT
64642690 GTGTGTATAT
Statistics
Matches: 648, Mismatches: 26, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
48 507 0.78
49 12 0.02
50 129 0.20
ACGTcount: A:0.36, C:0.05, G:0.27, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:64642291 original size:194 final size:194
Alignment explanation
Indices: 64641962--64642689 Score: 1271
Period size: 194 Copynumber: 3.8 Consensus size: 194
64641952 CAAGATAAAT
64641962 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
* * *
64642027 AGTCGAATGGCTAATGTGAATTATGTATGAGATATGTATATGTGGTAAAGTCGAATGGCTAATGT
66 AGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
64642092 GAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
131 GAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
* *
64642156 ATATGTATATGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
* *
64642221 AGTCGAATGGCTAATGTGAATTATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
66 AGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
*
64642286 GAAATATGTATGAGATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATATATATGAG
131 GAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
*
64642350 ATATGTATATGTGGTAAAGCCGAATAGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
64642415 AGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
66 AGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
* *
64642480 GAATTATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
131 GAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
* *
64642542 ATATGTATATGTGGTAAAGCCGAATGGTTAATGTGAAATATATATATGAGATATGTATATGTGGT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGTATATGTGGT
* * *
64642607 AAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
64 AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
64642672 GTGAAATATGTAGGAGAT
129 GTGAAATATGTATGAGAT
64642690 GTGTGTATAT
Statistics
Matches: 512, Mismatches: 20, Indels: 4
0.96 0.04 0.01
Matches are distributed among these distances:
192 43 0.08
193 4 0.01
194 465 0.91
ACGTcount: A:0.36, C:0.05, G:0.27, T:0.32
Consensus pattern (194 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
GAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
Found at i:64642296 original size:242 final size:242
Alignment explanation
Indices: 64641962--64642689 Score: 1298
Period size: 242 Copynumber: 3.0 Consensus size: 242
64641952 CAAGATAAAT
*
64641962 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAATTATGTATGAGATATGTATATGTGGTAA
* * *
64642027 AGTCGAATGGCTAATGTGAATTATGTATGAGATATGTATATGTGGTAAAGTCGAATGGCTAATGT
66 AGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
*
64642092 G-AA-ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGA
131 GAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATGA
*
64642155 GATATGTATATGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAG
194 GATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
64642204 ATATGTATATGTGGTAAAGTCGAATGGCTAATGTGAATTATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAATTATGTATGAGATATGTATATGTGGTAA
*
64642269 AGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCAAATGGCTAATGT
66 AGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
* *
64642334 GAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATAGCTAATGTGAAATATGTATGAGA
131 GAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGA
*
64642399 TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
196 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
64642446 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAATTATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAATTATGTATGAGATATGTATATGTGGTAA
*
64642511 AGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGTTAATGT
66 AGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
*
64642576 GAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGA
131 GAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGA
*
64642641 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
196 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
64642688 AT
1 AT
64642690 GTGTGTATAT
Statistics
Matches: 465, Mismatches: 19, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
242 417 0.90
243 4 0.01
244 44 0.09
ACGTcount: A:0.36, C:0.05, G:0.27, T:0.32
Consensus pattern (242 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAATTATGTATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
GAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGA
TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:64642884 original size:37 final size:37
Alignment explanation
Indices: 64642830--64642974 Score: 247
Period size: 37 Copynumber: 3.9 Consensus size: 37
64642820 GGAAATATAT
64642830 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
64642867 TCCGGGTAAGACTCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
64642904 TCCGGGTAAGACCCGATGACTACGTGTGGAGACTT-TG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGA-TTATG
* *
64642941 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
64642975 TCATCTGAGC
Statistics
Matches: 103, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
36 2 0.02
37 99 0.96
38 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:64643056 original size:106 final size:106
Alignment explanation
Indices: 64642921--64643136 Score: 423
Period size: 106 Copynumber: 2.0 Consensus size: 106
64642911 AAGACCCGAT
*
64642921 GACTACGTGTGGAGACTTTGTCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTCATCTGAGCT
1 GACTACGTGTGGAGACTTTGTCAGGGTAAGACCCGATAACTTCGTGTGGAGATTTCATCTGAGCT
64642986 AAAGGTCTCGCCGATAATCCGAGTAGAGGTTAAAGCTATAA
66 AAAGGTCTCGCCGATAATCCGAGTAGAGGTTAAAGCTATAA
64643027 GACTACGTGTGGAGACTTTGTCAGGGTAAGACCCGATAACTTCGTGTGGAGATTTCATCTGAGCT
1 GACTACGTGTGGAGACTTTGTCAGGGTAAGACCCGATAACTTCGTGTGGAGATTTCATCTGAGCT
64643092 AAAGGTCTCGCCGATAATCCGAGTAGAGGTTAAAGCTATAA
66 AAAGGTCTCGCCGATAATCCGAGTAGAGGTTAAAGCTATAA
64643133 GACT
1 GACT
64643137 TCGTAATAAG
Statistics
Matches: 109, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
106 109 1.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (106 bp):
GACTACGTGTGGAGACTTTGTCAGGGTAAGACCCGATAACTTCGTGTGGAGATTTCATCTGAGCT
AAAGGTCTCGCCGATAATCCGAGTAGAGGTTAAAGCTATAA
Found at i:64645442 original size:40 final size:40
Alignment explanation
Indices: 64645380--64645677 Score: 404
Period size: 40 Copynumber: 7.5 Consensus size: 40
64645370 AAGCCAAGTA
* * * * *
64645380 CCTTCGGGA-TTTGACCGGATATAGCT-ACTTGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
64645419 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
64645459 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
64645499 CCTTCAGGACATAGCCCGGAAATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
64645539 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
64645579 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
64645619 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
64645659 CCTTTGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
64645678 TTATCATCCA
Statistics
Matches: 232, Mismatches: 24, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
39 11 0.05
40 221 0.95
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:64649063 original size:33 final size:35
Alignment explanation
Indices: 64649026--64649105 Score: 87
Period size: 33 Copynumber: 2.4 Consensus size: 35
64649016 CCTAAACCCG
* *
64649026 TTCAGATAACAGTGATACTGGG-C-TAGAGCCCTT-
1 TTCAGATAACAGTGAAACTGGGCCTTAG-CCCCTTA
* *
64649059 TTCAGATTACA-TTAAACTGGGCCTTAGCCCCTTA
1 TTCAGATAACAGTGAAACTGGGCCTTAGCCCCTTA
64649093 TTCAGATAACAGT
1 TTCAGATAACAGT
64649106 ATAGCCTATA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
32 8 0.21
33 16 0.42
34 13 0.34
35 1 0.03
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.30
Consensus pattern (35 bp):
TTCAGATAACAGTGAAACTGGGCCTTAGCCCCTTA
Found at i:64658631 original size:37 final size:37
Alignment explanation
Indices: 64658578--64658680 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
64658568 CGAATAGTCC
*
64658578 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
64658615 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
64658652 CCACACGTAGTCATAGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
64658681 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:64658879 original size:35 final size:35
Alignment explanation
Indices: 64658838--64658909 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
64658828 ACATATTTCA
64658838 CACTAGCCATTCGGCTTTACCACATATACATATCT
1 CACTAGCCATTCGGCTTTACCACATATACATATCT
64658873 CACTAGCCATTCGGCTTTACCACATATACATATCT
1 CACTAGCCATTCGGCTTTACCACATATACATATCT
64658908 CA
1 CA
64658910 TACATATTTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.29, C:0.32, G:0.08, T:0.31
Consensus pattern (35 bp):
CACTAGCCATTCGGCTTTACCACATATACATATCT
Found at i:64658932 original size:48 final size:48
Alignment explanation
Indices: 64658873--64659371 Score: 909
Period size: 48 Copynumber: 10.5 Consensus size: 48
64658863 ATACATATCT
64658873 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
64658921 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
64658969 CACTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTCCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
64659017 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
64659065 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
64659113 CACTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
64659161 CACTAGCCATTCGGCTTTACCACATATACATA--TC-T-CATA-TTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
64659204 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
64659252 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
64659300 CACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
64659348 CATTAGCCATTTGGCTTTACCACA
1 CACTAGCCATTCGGCTTTACCACA
64659372 CACATATATA
Statistics
Matches: 437, Mismatches: 9, Indels: 10
0.96 0.02 0.02
Matches are distributed among these distances:
43 36 0.08
44 4 0.01
45 3 0.01
46 3 0.01
47 4 0.01
48 387 0.89
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.34
Consensus pattern (48 bp):
CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
Found at i:64663885 original size:54 final size:54
Alignment explanation
Indices: 64663821--64664328 Score: 396
Period size: 55 Copynumber: 9.6 Consensus size: 54
64663811 TTGGTAAGAT
* * * * *
64663821 AAGGATATCATGTAAAACCATGCCAAGGCATGGTATTAATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
* * * ** *
64663875 AAGGAAATCATGTAAGACCATGTCAAGATATGGCATTGATGAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGG-C
* * *
64663931 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGAC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
*** **
64663983 AAGGATACCATGTAAGACCATG-TTTGGAACATGGCATT--TG-G-----TAAGAT
1 AAGGATACCATGTAAGACCATGCCAAGG--CATGGCATTGATGAGTTCTATAAGGC
* *** **
64664030 AAGGATATCATGTAAGACCATG-TTTGGAACATGGCATT--TG-G-----TAAGAT
1 AAGGATACCATGTAAGACCATGCCAAGG--CATGGCATTGATGAGTTCTATAAGGC
* *
64664077 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
* * * *
64664131 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGGC
** *
64664186 AAAGG-CCCCATGTAAGACCATGCCAAGGCATGACATTGATGAGTTACTATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGGC
* * * *
64664241 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-CCCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
* * *
64664294 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCA
64664329 ATGGTAAGTT
Statistics
Matches: 388, Mismatches: 49, Indels: 35
0.82 0.10 0.07
Matches are distributed among these distances:
46 9 0.02
47 73 0.19
48 3 0.01
49 1 0.00
51 1 0.00
52 12 0.03
53 55 0.14
54 92 0.24
55 134 0.35
56 8 0.02
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
Found at i:64664034 original size:47 final size:47
Alignment explanation
Indices: 64663977--64664098 Score: 226
Period size: 47 Copynumber: 2.6 Consensus size: 47
64663967 GGTGAGTTCA
* *
64663977 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGATATCATGTAAGACCATGTTTGGAACATGGCATTTGG
64664024 TAAGATAAGGATATCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGATATCATGTAAGACCATGTTTGGAACATGGCATTTGG
64664071 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGATAAGGATATCATGTAAGACCATG
64664099 CCAAGGCATG
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.36, C:0.12, G:0.25, T:0.27
Consensus pattern (47 bp):
TAAGATAAGGATATCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:64664090 original size:256 final size:258
Alignment explanation
Indices: 64663768--64664262 Score: 852
Period size: 256 Copynumber: 1.9 Consensus size: 258
64663758 GCATTGGCAC
64663768 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
*
64663833 TAAAACCATGCCAAGGCATGGTATTAATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATGT
66 TAAAACCATGCCAAGGCATGGCATTAATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATGT
* * *
64663898 CAAGATATGGCATTGATGAGTTACTATAAGGAAAAGGTCCCATGTAAGACCATGCCAAGGCATGG
131 CAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGCCCCATGTAAGACCATGCCAAGGCATGA
*
64663963 CATTGGTGAGTT-C-ATAAGAC-AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
196 CATTGATGAGTTACTATAAGACAAAGG-TACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
64664024 TAAGATAAGGATATCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
* *
64664089 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATGT
66 TAAAACCATGCCAAGGCATGGCATTAATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATGT
*
64664154 CAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGCCCCATGTAAGACCATGCCAAGGCATGA
131 CAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGCCCCATGTAAGACCATGCCAAGGCATGA
* *
64664219 CATTGATGAGTTACTATAAGGCAAAGGTCCCATGTAAGACCATG
196 CATTGATGAGTTACTATAAGACAAAGGTACCATGTAAGACCATG
64664263 CCAAGGCATG
Statistics
Matches: 224, Mismatches: 12, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
256 197 0.88
257 1 0.00
258 22 0.10
259 4 0.02
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.24
Consensus pattern (258 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
TAAAACCATGCCAAGGCATGGCATTAATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATGT
CAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGCCCCATGTAAGACCATGCCAAGGCATGA
CATTGATGAGTTACTATAAGACAAAGGTACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:64669267 original size:15 final size:15
Alignment explanation
Indices: 64669244--64669274 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
64669234 AAATTAAGAA
64669244 AATAAAACATAACAT
1 AATAAAACATAACAT
*
64669259 AATATAACATAACAT
1 AATAAAACATAACAT
64669274 A
1 A
64669275 GCTTATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.65, C:0.13, G:0.00, T:0.23
Consensus pattern (15 bp):
AATAAAACATAACAT
Found at i:64673303 original size:46 final size:46
Alignment explanation
Indices: 64673025--64673302 Score: 387
Period size: 46 Copynumber: 6.0 Consensus size: 46
64673015 TTATCTTTGA
* * * * *
64673025 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATAT
* *
64673071 CATGTTGCCATGGTATCTTTCAACCATGGTATTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
* * * ***
64673117 CACGTTTCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
*
64673163 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
*
64673209 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
* *
64673255 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
64673301 CA
1 CA
64673303 GAGAGCACAC
Statistics
Matches: 210, Mismatches: 21, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 4 0.02
46 206 0.98
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
Found at i:64675146 original size:2 final size:2
Alignment explanation
Indices: 64675139--64675164 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
64675129 CTTTCCTTTC
64675139 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
64675165 TAAATAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:64677508 original size:29 final size:29
Alignment explanation
Indices: 64677445--64677512 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
64677435 TAATCAACCG
*
64677445 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
64677474 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
64677503 CGCACACTTA
1 CGCACACTTA
64677513 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:64677624 original size:174 final size:174
Alignment explanation
Indices: 64677334--64677808 Score: 878
Period size: 174 Copynumber: 2.7 Consensus size: 174
64677324 AACTCAAGGT
* *
64677334 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
64677399 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
64677464 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
64677508 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
64677573 GAAAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
64677638 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
64677682 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* * *
64677747 GAAAATATATATTGGGTTCGCACACATAATGCTTAATAATCAACTGCGCACACTTGGTGCCA
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCA
64677809 ATCTCATGAC
Statistics
Matches: 292, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 292 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:64677682 original size:29 final size:29
Alignment explanation
Indices: 64677619--64677686 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
64677609 TAATCAACCG
64677619 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
64677648 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
64677677 CGCACACTTA
1 CGCACACTTA
64677687 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:64679729 original size:27 final size:27
Alignment explanation
Indices: 64679707--64679774 Score: 120
Period size: 27 Copynumber: 2.5 Consensus size: 27
64679697 AGAATTATTG
64679707 TTTTACCCTCGATTTACAAAATTACCA
1 TTTTACCCTCGATTTACAAAATTACCA
64679734 TTTTACCCTC-AGTTTACAAAATTACCA
1 TTTTACCCTCGA-TTTACAAAATTACCA
64679761 TTTTACCCTCGATT
1 TTTTACCCTCGATT
64679775 GTGAAATTAC
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
26 1 0.03
27 37 0.95
28 1 0.03
ACGTcount: A:0.29, C:0.26, G:0.04, T:0.40
Consensus pattern (27 bp):
TTTTACCCTCGATTTACAAAATTACCA
Found at i:64679796 original size:27 final size:26
Alignment explanation
Indices: 64679766--64679935 Score: 114
Period size: 27 Copynumber: 6.3 Consensus size: 26
64679756 TACCATTTTA
**
64679766 CCCTCGATTGTGAAATTACTGAAATAC
1 CCCT-GATTGTGAAATTACCAAAATAC
*
64679793 CCCTG-TAG-GATAGAATTACCAAAATAC
1 CCCTGATTGTG--A-AATTACCAAAATAC
* *
64679820 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCT-GATTGTGAAATTACCAAAATAC
* * *
64679847 CCCTAGTTTGTAAAATTACCGAAATAC
1 CCCT-GATTGTGAAATTACCAAAATAC
* * *
64679874 CACTGGTTTGTGAAATTACCGAAATA-
1 CCCT-GATTGTGAAATTACCAAAATAC
*
64679900 CCCTCAATT-TGTAAATTTACCAAAATAC
1 CCCT-GATTGTG-AAA-TTACCAAAATAC
64679928 CCCTGATT
1 CCCTGATT
64679936 TACAAAATTA
Statistics
Matches: 119, Mismatches: 15, Indels: 18
0.78 0.10 0.12
Matches are distributed among these distances:
24 1 0.01
25 4 0.03
26 10 0.08
27 96 0.81
28 6 0.05
29 2 0.02
ACGTcount: A:0.36, C:0.22, G:0.12, T:0.29
Consensus pattern (26 bp):
CCCTGATTGTGAAATTACCAAAATAC
Found at i:64679847 original size:54 final size:54
Alignment explanation
Indices: 64679773--64679928 Score: 163
Period size: 54 Copynumber: 2.9 Consensus size: 54
64679763 TTACCCTCGA
* * *
64679773 TTGTGAAATTACTGAAATACCCCT-GTAGGATAGAATTACCAAAATACCCCTAGT
1 TTGTGAAATTACCGAAATACCCCTAGTAGG-TAAAATTACCAAAATACCACTAGT
* * ** * *
64679827 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATACCACTGGT
1 TTGTGAAATTACCGAAATACCCCTAGTAGGTAAAATTACCAAAATACCACTAGT
* ** *
64679881 TTGTGAAATTACCGAAATA-CCCTCAATTTGTAAATTTACCAAAATACC
1 TTGTGAAATTACCGAAATACCCCT-AGTAGGTAAAATTACCAAAATACC
64679929 CCTGATTTAC
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
53 4 0.05
54 79 0.92
55 3 0.03
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (54 bp):
TTGTGAAATTACCGAAATACCCCTAGTAGGTAAAATTACCAAAATACCACTAGT
Found at i:64679899 original size:81 final size:81
Alignment explanation
Indices: 64679806--64679955 Score: 214
Period size: 81 Copynumber: 1.9 Consensus size: 81
64679796 TGTAGGATAG
* ** *
64679806 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCGA
1 AATTACCAAAATACCCTC-AATTTGTAAAATTACCAAAATACCCCTGA-TTTACAAAATTACAGA
64679869 AATACCACTGGTTTGTGA
64 AATACCACTGGTTTGTGA
* *
64679887 AATTACCGAAATACCCTCAATTTGTAAATTTACCAAAATACCCCTGATTTACAAAATTACAGAAA
1 AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAA
64679952 TACC
66 TACC
64679956 CTTGACTTTC
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
81 59 0.97
82 2 0.03
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.29
Consensus pattern (81 bp):
AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAA
TACCACTGGTTTGTGA
Found at i:64679936 original size:27 final size:26
Alignment explanation
Indices: 64679806--64679956 Score: 160
Period size: 27 Copynumber: 5.6 Consensus size: 26
64679796 TGTAGGATAG
64679806 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTA-TTTGTAA
64679833 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTA-TTTGTAA
* * * *
64679860 AATTACCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCT-ATTTGTAA
* *
64679887 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCC-CTATTTGTAA
* **
64679914 ATTTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCCT-ATTTGTAA
64679941 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
64679957 TTGACTTTCT
Statistics
Matches: 106, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
26 3 0.03
27 102 0.96
28 1 0.01
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (26 bp):
AATTACCAAAATACCCCTATTTGTAA
Found at i:64679944 original size:54 final size:54
Alignment explanation
Indices: 64679806--64680039 Score: 177
Period size: 54 Copynumber: 4.3 Consensus size: 54
64679796 TGTAGGATAG
** *
64679806 AATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAA
1 AATTACCAAAATACCCCTGA-TTTACAAAATTACCGAAATACCCTC-AGTTTGTAA
* * * *** *
64679860 AATTACCGAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCCTGATTTACAAAATTACCGAAATACCCTCAGTTTGTAA
* * * * *
64679914 ATTTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCTTGACTTTCTAAA
1 AATTACCAAAATACCCCTGATTTACAAAATTACCGAAATACCC-TCAGTTTGT-AA
* ** * * ** *
64679970 AATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTTGTAG
1 AATTACCA-AAATACCCCTGATTTACAAAATTACCGAAATACCCTCAGTTTGTAA
* *
64680024 ATTTACCAAAACACCC
1 AATTACCAAAATACCC
64680040 TTGTAGTGTA
Statistics
Matches: 142, Mismatches: 32, Indels: 12
0.76 0.17 0.06
Matches are distributed among these distances:
54 91 0.64
55 14 0.10
56 37 0.26
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACCAAAATACCCCTGATTTACAAAATTACCGAAATACCCTCAGTTTGTAA
Found at i:64680007 original size:27 final size:27
Alignment explanation
Indices: 64679922--64680019 Score: 101
Period size: 27 Copynumber: 3.6 Consensus size: 27
64679912 AAATTTACCA
* * *
64679922 AAATACCCCTGATTTACAAAATTACAG
1 AAATACCCTTGGTTTACAAAATTACTG
*
64679949 AAATACCCTTGACTTT-CTAAAAATTA-TAG
1 AAATACCCTTG-GTTTAC--AAAATTACT-G
*
64679978 AAATACCATTGGTTTACAAAATTACTG
1 AAATACCCTTGGTTTACAAAATTACTG
64680005 AAATACCCTTGGTTT
1 AAATACCCTTGGTTT
64680020 GTAGATTTAC
Statistics
Matches: 59, Mismatches: 6, Indels: 12
0.77 0.08 0.16
Matches are distributed among these distances:
27 33 0.56
28 7 0.12
29 19 0.32
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATACCCTTGGTTTACAAAATTACTG
Found at i:64680010 original size:110 final size:108
Alignment explanation
Indices: 64679808--64680039 Score: 261
Period size: 110 Copynumber: 2.1 Consensus size: 108
64679798 TAGGATAGAA
** * * *
64679808 TTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATA
1 TTACCAAAATACCCCTAGTTTACAAAATTACCAAAATACCCCTACTTTCTAAAATTACAGAAATA
***
64679873 CCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAT
66 CCACTGGTTTACAAAATTACCGAAATACCCTCAATTTGTAAAT
* *
64679916 TTACCAAAATACCCCT-GATTTACAAAATTA-CAGAAATACCCTTGACTTTCTAAAAATTATAGA
1 TTACCAAAATACCCCTAG-TTTACAAAATTACCA-AAATACCCCT-ACTTTCT-AAAATTACAGA
* * *** *
64679979 AATACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTTGTAGAT
62 AATACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTGTAAAT
*
64680026 TTACCAAAACACCC
1 TTACCAAAATACCC
64680040 TTGTAGTGTA
Statistics
Matches: 103, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
107 3 0.03
108 35 0.34
109 5 0.05
110 60 0.58
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (108 bp):
TTACCAAAATACCCCTAGTTTACAAAATTACCAAAATACCCCTACTTTCTAAAATTACAGAAATA
CCACTGGTTTACAAAATTACCGAAATACCCTCAATTTGTAAAT
Found at i:64681198 original size:25 final size:27
Alignment explanation
Indices: 64681157--64681209 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
64681147 AGTCAAACAT
64681157 GCATTTAGGTCAATTTAAC-CCTAGGG
1 GCATTTAGGTCAATTTAACTCCTAGGG
* *
64681183 GCATTTCGGT-AATTTATCTCCTAGGG
1 GCATTTAGGTCAATTTAACTCCTAGGG
64681209 G
1 G
64681210 TAAAACTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.34
Consensus pattern (27 bp):
GCATTTAGGTCAATTTAACTCCTAGGG
Found at i:64682733 original size:26 final size:26
Alignment explanation
Indices: 64682698--64682805 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
64682688 TGAAATGCCC
*
64682698 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
64682724 ATCATAGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
64682750 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
64682776 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
64682802 ATCA
1 ATCA
64682806 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:64687987 original size:26 final size:26
Alignment explanation
Indices: 64687952--64688059 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
64687942 TGAAATGCCC
*
64687952 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
64687978 ATCATAGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
64688004 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
64688030 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
64688056 ATCA
1 ATCA
64688060 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:64689753 original size:37 final size:37
Alignment explanation
Indices: 64689703--64689781 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
64689693 TTATTACGAA
* * * * *
64689703 GTCTTACCCGGACATAATCTCCAGATGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
64689740 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
64689777 GTCTT
1 GTCTT
64689782 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:64689978 original size:47 final size:47
Alignment explanation
Indices: 64689900--64690398 Score: 908
Period size: 47 Copynumber: 10.6 Consensus size: 47
64689890 CCCTTCGGGA
* * ** * * *
64689900 CTTATCACATTTATACACTTTCACATCCATCATGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64689947 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64689994 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64690041 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64690088 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64690135 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64690182 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64690229 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64690276 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64690323 CTTATCACATATATACACTTTCACATTCATCCCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64690370 CTTATCACATATATACACTTTCACATTCA
1 CTTATCACATATATACACTTTCACATTCA
64690399 NNNNNNNNNN
Statistics
Matches: 440, Mismatches: 12, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 440 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:64700181 original size:85 final size:85
Alignment explanation
Indices: 64700038--64700216 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
64700028 GGTCGGCCAT
*
64700038 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTAGGGTAGTGCATTAT
64700103 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
64700123 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTAGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTAGGGTAGTGCATTAT
64700188 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
64700208 GAGCATGGG
1 GAGCATGGG
64700217 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.39, C:0.08, G:0.27, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTAGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:64702667 original size:40 final size:41
Alignment explanation
Indices: 64702532--64702717 Score: 261
Period size: 41 Copynumber: 4.6 Consensus size: 41
64702522 TACTCGAATG
*
64702532 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
*
64702573 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
* *
64702614 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGCGACT
* * *
64702654 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
* *
64702694 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
64702718 CTTGTGCGAG
Statistics
Matches: 133, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 1 0.01
40 62 0.47
41 69 0.52
42 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (41 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
Found at i:64702674 original size:81 final size:82
Alignment explanation
Indices: 64702534--64702687 Score: 249
Period size: 81 Copynumber: 1.9 Consensus size: 82
64702524 CTCGAATGAT
* * *
64702534 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCTT
1 ATCCGGACTAAGTCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCAT
*
64702599 TTGTGCTAAGCGACTAC
66 TTATGCTAAGCGACTAC
64702616 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATCCGGACTAAG-TCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
64702679 TTTATGCTA
65 TTTATGCTA
64702688 GTGACCATAT
Statistics
Matches: 67, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
81 39 0.58
82 27 0.40
83 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.25
Consensus pattern (82 bp):
ATCCGGACTAAGTCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCAT
TTATGCTAAGCGACTAC
Found at i:64713136 original size:47 final size:46
Alignment explanation
Indices: 64713070--64713520 Score: 378
Period size: 47 Copynumber: 9.6 Consensus size: 46
64713060 TTTGTGCGCT
* * *
64713070 AGTGTAAGA-CATGTTTGGGACAT-GCATCGACCATATTATGAGAACC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGA-C-TATGATGAGACCC
* * * *
64713116 AGTGTAAGACCATGTCTGGGACATGGAAACGAC-ATCGA-GACGGGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTAT-GATGA---GACCC
* *
64713164 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGA-GATGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACT--ATGATG-AGACCC
* * * **
64713210 AGTGTAAGA-CATGTTTGGGACAT-GCATCGGCTATGACATGTG--TT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTATG--ATGAGACCC
* *
64713254 AGTGTAAGACCATGTCTGGGACATGGCATTGGCACGGATAT-ATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCA-TCG-AC---TATGATGAGACCC
64713304 AGTGTAAGACCATGTCTGGGACATGGCATCGACT-TGATGGATGACCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTATGAT-GA-GACCC
*
64713351 AGCGTAAGACCATGTCTGGGACATGGCATCGACT-TGATGGATGACCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTATGAT-GA-GACCC
*
64713398 AGCGTAAGACCATGTCTGGGACATGGCATCGACT-TGATGGATGACCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTATGAT-GA-GACCC
*
64713445 AGCGTAAGACCATGTCTGGGACATGGCATCGACT-TGATGGATGACCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTATGAT-GA-GACCC
*
64713492 AGCGTAAGACCATGTCTGGGACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
64713521 TGGCATTACA
Statistics
Matches: 353, Mismatches: 24, Indels: 55
0.82 0.06 0.13
Matches are distributed among these distances:
43 1 0.00
44 11 0.03
45 23 0.07
46 51 0.14
47 205 0.58
48 26 0.07
49 3 0.01
50 30 0.08
51 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTATGATGAGACCC
Found at i:64713426 original size:94 final size:94
Alignment explanation
Indices: 64713257--64713520 Score: 431
Period size: 94 Copynumber: 2.8 Consensus size: 94
64713247 ATGTGTTAGT
* * ** * *
64713257 GTAAGACCATGTCTGGGACATGGCATTGGCAC-GGATATATGAGAGCCAGTGTAAGACCATGTCT
1 GTAAGACCATGTCTGGGACATGGCA-TCG-ACTTGATGGAT--GACCCAGCGTAAGACCATGTCT
64713321 GGGACATGGCATCGACTTGATGGATGACCCAGC
62 GGGACATGGCATCGACTTGATGGATGACCCAGC
64713354 GTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGACCCAGCGTAAGACCATGTCTGGGA
1 GTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGACCCAGCGTAAGACCATGTCTGGGA
64713419 CATGGCATCGACTTGATGGATGACCCAGC
66 CATGGCATCGACTTGATGGATGACCCAGC
64713448 GTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGACCCAGCGTAAGACCATGTCTGGGA
1 GTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGACCCAGCGTAAGACCATGTCTGGGA
64713513 CATGGCAT
66 CATGGCAT
64713521 TGGCATTACA
Statistics
Matches: 160, Mismatches: 6, Indels: 5
0.94 0.04 0.03
Matches are distributed among these distances:
94 126 0.79
95 2 0.01
96 7 0.04
97 25 0.16
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (94 bp):
GTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGACCCAGCGTAAGACCATGTCTGGGA
CATGGCATCGACTTGATGGATGACCCAGC
Found at i:64713452 original size:141 final size:143
Alignment explanation
Indices: 64713257--64713520 Score: 435
Period size: 141 Copynumber: 1.9 Consensus size: 143
64713247 ATGTGTTAGT
* * * *
64713257 GTAAGACCATGTCTGGGACATGGCATTGGCACGGATATATGAGAGCCAGTGTAAGACCATGTCTG
1 GTAAGACCATGTCTGGGACATGGCATTCGCACGGATAGAT-AGACCCAGCGTAAGACCATGTCTG
64713322 GGACATGGCATCGACTTGATGGATGACCCAGCGTAAGACCATGTCTGGGACATGGCATCGACTTG
65 GGACATGGCATCGACTTGATGGATGACCCAGCGTAAGACCATGTCTGGGACATGGCATCGACTTG
64713387 ATGGATGACCCAGC
130 ATGGATGACCCAGC
* *
64713401 GTAAGACCATGTCTGGGACATGGCA-TCG-ACTTGATGGAT-GACCCAGCGTAAGACCATGTCTG
1 GTAAGACCATGTCTGGGACATGGCATTCGCAC-GGATAGATAGACCCAGCGTAAGACCATGTCTG
64713463 GGACATGGCATCGACTTGATGGATGACCCAGCGTAAGACCATGTCTGGGACATGGCAT
65 GGACATGGCATCGACTTGATGGATGACCCAGCGTAAGACCATGTCTGGGACATGGCAT
64713521 TGGCATTACA
Statistics
Matches: 113, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
141 79 0.70
142 2 0.02
143 7 0.06
144 25 0.22
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (143 bp):
GTAAGACCATGTCTGGGACATGGCATTCGCACGGATAGATAGACCCAGCGTAAGACCATGTCTGG
GACATGGCATCGACTTGATGGATGACCCAGCGTAAGACCATGTCTGGGACATGGCATCGACTTGA
TGGATGACCCAGC
Found at i:64715315 original size:13 final size:13
Alignment explanation
Indices: 64715293--64715332 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
64715283 GAAGCACTTG
64715293 CACACGGGCGTGT
1 CACACGGGCGTGT
* *
64715306 CACACAGGCGTTT
1 CACACGGGCGTGT
64715319 CACACGGGCGTGT
1 CACACGGGCGTGT
64715332 C
1 C
64715333 TCTGTCCGGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.17
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:64719479 original size:55 final size:55
Alignment explanation
Indices: 64719374--64719479 Score: 122
Period size: 55 Copynumber: 1.9 Consensus size: 55
64719364 GTGGGCAATC
* * * * * *
64719374 CTGCCAAAACAACACGGGCGTGCAACATGCCCGTGTCTATAAGCCTTGGTCAAAA
1 CTGCCAAAACAACACGAGCGTGCAACACGCCCGTGCCCACAAGCCGTGGTCAAAA
** * *
64719429 CTGCCAAATTAACACGAGCGTGCGACACGCCCGTGCCCACCAGCCGTGGTC
1 CTGCCAAAACAACACGAGCGTGCAACACGCCCGTGCCCACAAGCCGTGGTC
64719480 GATACTATCA
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
55 41 1.00
ACGTcount: A:0.26, C:0.34, G:0.24, T:0.16
Consensus pattern (55 bp):
CTGCCAAAACAACACGAGCGTGCAACACGCCCGTGCCCACAAGCCGTGGTCAAAA
Found at i:64725399 original size:48 final size:48
Alignment explanation
Indices: 64725328--64725905 Score: 931
Period size: 48 Copynumber: 12.0 Consensus size: 48
64725318 CAAGATAAAT
* * *
64725328 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGATATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
64725376 ATATGTATATGTGGGAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * * *
64725424 ATATGTATACGTGGTAAAGCCGAATGGCTAATATGAACTATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * * *
64725472 AAATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATCTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
64725520 ATATGTATATGTGGTAAAGCCGGATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
64725568 ATATGTATAGGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
64725616 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
64725664 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
64725712 ATATGTACATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
64725760 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
64725808 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * * *
64725856 ATATGTATATTTGGTAAAGCTGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
64725904 AT
1 AT
64725906 GTGTGTATAT
Statistics
Matches: 489, Mismatches: 41, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 489 1.00
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:64726096 original size:37 final size:37
Alignment explanation
Indices: 64726046--64726148 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
64726036 GGAAATATAT
64726046 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
64726083 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
64726120 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
64726149 GGACTATTCG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:64728210 original size:13 final size:13
Alignment explanation
Indices: 64728192--64728217 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
64728182 AAGCACTTGA
64728192 ACACGGGCGTGTC
1 ACACGGGCGTGTC
64728205 ACACGGGCGTGTC
1 ACACGGGCGTGTC
64728218 TTTGTCGGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:64729672 original size:21 final size:20
Alignment explanation
Indices: 64729637--64729676 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
64729627 GTTATAATGA
*
64729637 CCACACGGGCATGTTGCCCTT
1 CCACACGAGCATGTT-CCCTT
*
64729658 CCACACGAGCGTGTTCCCT
1 CCACACGAGCATGTTCCCT
64729677 ATTTCAATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.15, C:0.40, G:0.23, T:0.23
Consensus pattern (20 bp):
CCACACGAGCATGTTCCCTT
Found at i:64735091 original size:46 final size:48
Alignment explanation
Indices: 64734989--64735209 Score: 194
Period size: 46 Copynumber: 4.7 Consensus size: 48
64734979 ACATTATGAG
* * * *
64734989 AGCCAGTGTAAGACCACGCCTGGGACATGGCAAT-AGCATCGAGATG-A
1 AGCCAGTGTAAGACCATGTCTGGGACATGGC-ATCGGCCTCGAGATGTA
* *
64735036 GAG-CTGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTCGAGATGTA
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTA
* *
64735082 AACCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CTATGAGATGT-
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGATGTA
* * * *
64735127 -GTCAGTGTAAGACCACGTCTGGGACATGGCATAGGCAC-GGAGATGTGA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAGATGT-A
*
64735175 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATC
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATC
64735210 AGCATTACAC
Statistics
Matches: 142, Mismatches: 19, Indels: 22
0.78 0.10 0.12
Matches are distributed among these distances:
44 12 0.08
45 28 0.20
46 61 0.43
47 9 0.06
48 3 0.02
50 29 0.20
ACGTcount: A:0.28, C:0.19, G:0.32, T:0.21
Consensus pattern (48 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTA
Found at i:64736975 original size:12 final size:12
Alignment explanation
Indices: 64736958--64736989 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
64736948 ATGCTAATTT
64736958 CATTCTTTCACA
1 CATTCTTTCACA
64736970 CATTCTTTCACA
1 CATTCTTTCACA
64736982 CATTCTTT
1 CATTCTTT
64736990 ATACTAACCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.22, C:0.31, G:0.00, T:0.47
Consensus pattern (12 bp):
CATTCTTTCACA
Found at i:64737378 original size:68 final size:70
Alignment explanation
Indices: 64737232--64737387 Score: 160
Period size: 68 Copynumber: 2.2 Consensus size: 70
64737222 AGCTGATTTG
* * * * *
64737232 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATA
*
64737297 TATCTG
65 TATCTA
* *
64737303 TCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGCGACCTAGCTAC-TA
1 TCTCGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTACATA
*
64737364 TATAGTA
65 TAT-CTA
64737371 TCTCGTAGC-CTTCTTGT
1 TCTCGTAGCTC-TCTTGT
64737388 ACACATGATG
Statistics
Matches: 72, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
67 5 0.07
68 37 0.51
70 2 0.03
71 28 0.39
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATAT
ATCTA
Found at i:64743768 original size:62 final size:62
Alignment explanation
Indices: 64743671--64743787 Score: 234
Period size: 62 Copynumber: 1.9 Consensus size: 62
64743661 TTTCATACTA
64743671 AAAACTTCTAGAATGCAAGTTTTGCAACTTATTCGATTTAGTCCCTACTTTCAATAAGTTGC
1 AAAACTTCTAGAATGCAAGTTTTGCAACTTATTCGATTTAGTCCCTACTTTCAATAAGTTGC
64743733 AAAACTTCTAGAATGCAAGTTTTGCAACTTATTCGATTTAGTCCCTACTTTCAAT
1 AAAACTTCTAGAATGCAAGTTTTGCAACTTATTCGATTTAGTCCCTACTTTCAAT
64743788 TTAAGCGCTT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 55 1.00
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.38
Consensus pattern (62 bp):
AAAACTTCTAGAATGCAAGTTTTGCAACTTATTCGATTTAGTCCCTACTTTCAATAAGTTGC
Found at i:64750136 original size:46 final size:46
Alignment explanation
Indices: 64750069--64750169 Score: 202
Period size: 46 Copynumber: 2.2 Consensus size: 46
64750059 CCCCCCTAAT
64750069 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAG
64750115 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAG
64750161 TGAACTCGG
1 TGAACTCGG
64750170 CACTTTTCCC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 55 1.00
ACGTcount: A:0.28, C:0.30, G:0.23, T:0.20
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAG
Found at i:64754503 original size:68 final size:68
Alignment explanation
Indices: 64754356--64754511 Score: 149
Period size: 68 Copynumber: 2.2 Consensus size: 68
64754346 AGGCGATTTG
* * * * *
64754356 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATA
*
64754421 TATC
65 TATA
* *
64754425 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC-
64754487 ATATAGTA
62 ATATA-TA
64754495 TCTCGTAGC-CTTCTTGT
1 TCTCGTAGCTC-TCTTGT
64754512 ACACATGATG
Statistics
Matches: 73, Mismatches: 8, Indels: 13
0.78 0.09 0.14
Matches are distributed among these distances:
67 1 0.01
68 33 0.45
69 7 0.10
70 6 0.08
71 26 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATAT
ATA
Found at i:64757619 original size:22 final size:22
Alignment explanation
Indices: 64757591--64757713 Score: 76
Period size: 22 Copynumber: 5.3 Consensus size: 22
64757581 ACATGCATAT
64757591 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* *
64757613 ATGTGATGAATGTG-AGCAT-G-CA
1 ATGTGAT-AA-G-GCCGAATGGCCA
64757635 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
* *
64757660 ATGTGATTAATG-CGAACAT-GCATA
1 ATGTGA-TAAGGCCG-A-ATGGC-CA
64757684 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
64757707 ATGTGAT
1 ATGTGAT
64757714 GAATGTGAAC
Statistics
Matches: 77, Mismatches: 8, Indels: 32
0.66 0.07 0.27
Matches are distributed among these distances:
22 24 0.31
23 18 0.23
24 18 0.23
25 17 0.22
ACGTcount: A:0.32, C:0.14, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:64757798 original size:47 final size:47
Alignment explanation
Indices: 64757519--64757783 Score: 406
Period size: 47 Copynumber: 5.6 Consensus size: 47
64757509 TTAGGATTTT
** * *
64757519 ATGTGATGAATGTGAATGTGTATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
64757566 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
64757613 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
64757660 ATGTGATTAATGCGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
64757707 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
64757754 ATGTGATGAACGTGAA-AGTGTATATATGTG
1 ATGTGATGAATGTGAACA-TGCATATATGTG
64757784 GCGAAGCCGA
Statistics
Matches: 200, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 1 0.00
47 199 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Done.