Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 199 of 322
Found at i:65406400 original size:47 final size:47
Alignment explanation
Indices: 65406337--65406687 Score: 603
Period size: 47 Copynumber: 7.4 Consensus size: 47
65406327 CCCTTCGGGA
* * * *
65406337 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65406384 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65406431 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65406478 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65406525 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65406572 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
65406619 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
65406668 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
65406688 GTACATCAAT
Statistics
Matches: 293, Mismatches: 9, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 250 0.85
49 43 0.15
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:65413082 original size:17 final size:18
Alignment explanation
Indices: 65413069--65413279 Score: 128
Period size: 17 Copynumber: 11.9 Consensus size: 18
65413059 TAATCTTCAA
65413069 TGATATGCAATCTTAGATG
1 TGATATGCAATCTTAGA-G
65413088 TGATATGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* *
65413105 T-ATGATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
65413124 TGAT-TGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* *
65413140 T-ATGATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
65413159 TGAT-TGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* *
65413175 T-ATGATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
65413194 TGAT-TGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* *
65413210 T-ATGATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
65413229 TGAT-TGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* *
65413245 T-ATGATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
65413264 TGAT-TGCAATCTTAGA
1 TGATATGCAATCTTAGA
65413280 TATGATACAA
Statistics
Matches: 158, Mismatches: 10, Indels: 49
0.73 0.05 0.23
Matches are distributed among these distances:
15 8 0.05
16 6 0.04
17 57 0.36
18 55 0.35
19 22 0.14
20 10 0.06
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.37
Consensus pattern (18 bp):
TGATATGCAATCTTAGAG
Found at i:65413138 original size:35 final size:35
Alignment explanation
Indices: 65413076--65413318 Score: 438
Period size: 35 Copynumber: 7.0 Consensus size: 35
65413066 CAATGATATG
*
65413076 CAATCTTAGATGTGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
65413112 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
65413147 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
65413182 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
65413217 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
65413252 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
*
65413287 CAA---TAGATATGCTTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
65413319 TACAATATTA
Statistics
Matches: 205, Mismatches: 2, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
32 28 0.14
35 162 0.79
36 15 0.07
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.37
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:65420033 original size:44 final size:44
Alignment explanation
Indices: 65419983--65420124 Score: 132
Period size: 44 Copynumber: 3.3 Consensus size: 44
65419973 CGCCTTAATC
*
65419983 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATTCT
1 CCCTAAGCAGTAGGGTAGCAGGTTAAATTTGCAGATCTTATTCT
* * ** ** * *
65420027 CCCTAAGCAGTAATGG-AGCAGATCGAA---GACCCACCTTAATC-
1 CCCTAAGCAGT-AGGGTAGCAGGTTAAATTTG-CAGATCTTATTCT
*
65420068 CCCTAAGCAGTAAGGTAGCAGGTTAAATTTGCAGATCTTATTCT
1 CCCTAAGCAGTAGGGTAGCAGGTTAAATTTGCAGATCTTATTCT
*
65420112 CCCTCAGCAGTAG
1 CCCTAAGCAGTAG
65420125 TGGAGAAGAT
Statistics
Matches: 72, Mismatches: 19, Indels: 14
0.69 0.18 0.13
Matches are distributed among these distances:
40 3 0.04
41 20 0.28
42 8 0.11
43 8 0.11
44 30 0.42
45 3 0.04
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.26
Consensus pattern (44 bp):
CCCTAAGCAGTAGGGTAGCAGGTTAAATTTGCAGATCTTATTCT
Found at i:65420121 original size:85 final size:87
Alignment explanation
Indices: 65419975--65420338 Score: 457
Period size: 85 Copynumber: 4.3 Consensus size: 87
65419965 AAATTCAGCG
*
65419975 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATTCTCCCTAAGCAGTAA
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATTCTCCCTAAGCAGTAG
* *
65420040 TGGAGCAGATCGA-A-GACCCA
66 CGGAGCAGATCGAGATGACTCA
* * *
65420060 CCTTAATCCCCTAAGCAGTAAGGTAGCAGGTTAAATTTGCAGATCTTATTCTCCCTCAGCAGTAG
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATTCTCCCTAAGCAGTAG
* * *
65420125 TGGAGAAGATCGA-A-GACTCG
66 CGGAGCAGATCGAGATGACTCA
* * *
65420145 TCTTAATCCCCTAAGCAGTAGGGTAAAAGG-----TTCGCAGATCTTA-TCTCCCTAAGCAGTAG
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATTCTCCCTAAGCAGTAG
* *
65420204 CAGAGCAGATCGATGATGACTCG
66 CGGAGCAGATCGA-GATGACTCA
* *
65420227 CATTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATT-TCCCTAAGCGGTAG
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATTCTCCCTAAGCAGTAG
*
65420291 CGGAGCAAATCGAAGATGA-TGCA
66 CGGAGCAGATCG-AGATGACT-CA
65420314 CCTTAA-CCCCTAAGCAGTAGGGTAA
1 CCTTAATCCCCTAAGCAGTAGGGTAA
65420339 TAGACCAAGA
Statistics
Matches: 243, Mismatches: 25, Indels: 21
0.84 0.09 0.07
Matches are distributed among these distances:
79 25 0.10
80 12 0.05
81 1 0.00
82 33 0.14
85 104 0.43
86 20 0.08
87 46 0.19
88 2 0.01
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.25
Consensus pattern (87 bp):
CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATTCTCCCTAAGCAGTAG
CGGAGCAGATCGAGATGACTCA
Found at i:65420260 original size:167 final size:167
Alignment explanation
Indices: 65419975--65420338 Score: 452
Period size: 167 Copynumber: 2.2 Consensus size: 167
65419965 AAATTCAGCG
* *
65419975 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATTCTCCCTAAGCAGTAA
1 CCTTAATCCCCTAAGCAGTAGGGTAAAAGG----ATTCGCAGATCTTATTCTCCCTAAGCAGTAA
** * *
65420040 TGGAGCAGATCGAAGACCCACCTTAATCCCCTAAGCAGTAAGGTAGCAGGTTAAATTTGCAGATC
62 CAGAGCAGATCGAAGACCCACATTAATCCCCTAAGCAGTAAGGTAACAGGTTAAATTTGCAGATC
* * * *
65420105 TTATTCTCCCTCAGCAGTAGTGGAG-AAGATCGAAGA-CT-CG
127 TTATT-TCCCTAAGCAGTAGCGGAGCAA-ATCGAAGAGATGCA
* *
65420145 TCTTAATCCCCTAAGCAGTAGGGTAAAAGG-TTCGCAGATCTTA-TCTCCCTAAGCAGTAGCAGA
1 CCTTAATCCCCTAAGCAGTAGGGTAAAAGGATTCGCAGATCTTATTCTCCCTAAGCAGTAACAGA
* * *
65420208 GCAGATCGATGATGACTCGCATTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCT
66 GCAGATCGA--A-GACCCACATTAATCCCCTAAGCAGTAAGGTAACAGGTTAAATTTGCAGATCT
*
65420273 TATTTCCCTAAGCGGTAGCGGAGCAAATCGAAGATGATGCA
128 TATTTCCCTAAGCAGTAGCGGAGCAAATCGAAGA-GATGCA
65420314 CCTTAA-CCCCTAAGCAGTAGGGTAA
1 CCTTAATCCCCTAAGCAGTAGGGTAA
65420339 TAGACCAAGA
Statistics
Matches: 170, Mismatches: 17, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
164 26 0.15
165 12 0.07
166 25 0.15
167 53 0.31
168 20 0.12
169 6 0.04
170 28 0.16
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.25
Consensus pattern (167 bp):
CCTTAATCCCCTAAGCAGTAGGGTAAAAGGATTCGCAGATCTTATTCTCCCTAAGCAGTAACAGA
GCAGATCGAAGACCCACATTAATCCCCTAAGCAGTAAGGTAACAGGTTAAATTTGCAGATCTTAT
TTCCCTAAGCAGTAGCGGAGCAAATCGAAGAGATGCA
Found at i:65421038 original size:206 final size:206
Alignment explanation
Indices: 65420345--65421054 Score: 1181
Period size: 207 Copynumber: 3.4 Consensus size: 206
65420335 GTAATAGACC
*
65420345 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGACATCTC
1 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTC
* * *
65420410 TGTATTATCAAAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCA
66 TGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCA
65420475 GATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACA
131 GATCTGGCCTTCAGATGTTTATACTGAA-CAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACA
65420540 AGGAACAAATCG
195 AGGAACAAATCG
*
65420552 AAGACATAGCTGATTTGGTTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTC
1 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTC
* * *
65420617 TGTATTGTCAGAGAACAAATTGAAGTTTGGCGTCTCCCTATTCGATGGAGGGCAGACACATAGCA
66 TGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCA
65420682 GATCTGGCCTTCAGATGTTTATACTGAACCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACA
131 GATCTGGCCTTCAGATGTTTATACTGAA-CAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACA
65420747 AGGAACAAATCG
195 AGGAACAAATCG
65420759 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTC
1 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTC
* * *
65420824 TGTATTGTCAGAGAACAAATCGAAGTTTGGCATCTCCATATTCGACGGAGGACAGACATATAGCA
66 TGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCA
** * * * *
65420889 GATCTAACCTTCAGATGATTAGACTGAA-ATAGATCCAAGATGGTTTGGTATCATTGTGCTTACA
131 GATCTGGCCTTCAGATGTTTATACTGAACA-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACA
65420953 AGGAGA-AAATCG
195 AGGA-ACAAATCG
* * *
65420965 AAGACATAGCTGATTTGGCTTTCGCGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTC
1 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTC
*
65421030 TTTATTGTCAGAGAACAAATCGAAG
66 TGTATTGTCAGAGAACAAATCGAAG
65421055 AAGCAGATTT
Statistics
Matches: 475, Mismatches: 26, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
205 1 0.00
206 128 0.27
207 346 0.73
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (206 bp):
AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTC
TGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCA
GATCTGGCCTTCAGATGTTTATACTGAACAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAA
GGAACAAATCG
Found at i:65427104 original size:21 final size:20
Alignment explanation
Indices: 65427080--65427119 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 20
65427070 TGAGTATTTT
65427080 AATGTTTGATGATAGATTATG
1 AATGTTTGATGATA-ATTATG
65427101 AATGTTTGATGATAATTAT
1 AATGTTTGATGATAATTAT
65427120 ACAAGTTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.35, C:0.00, G:0.20, T:0.45
Consensus pattern (20 bp):
AATGTTTGATGATAATTATG
Found at i:65427129 original size:21 final size:21
Alignment explanation
Indices: 65427080--65427127 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
65427070 TGAGTATTTT
*
65427080 AATGTTTGATGATAGATTATG
1 AATGTTTGATGATAGATTATC
65427101 AATGTTTGATGATA-ATTATAC
1 AATGTTTGATGATAGATTAT-C
65427122 AA-GTTT
1 AATGTTT
65427128 TGTTATGTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 9 0.36
21 16 0.64
ACGTcount: A:0.35, C:0.02, G:0.19, T:0.44
Consensus pattern (21 bp):
AATGTTTGATGATAGATTATC
Found at i:65431893 original size:23 final size:22
Alignment explanation
Indices: 65431867--65431917 Score: 66
Period size: 23 Copynumber: 2.3 Consensus size: 22
65431857 TGGCCGGATT
65431867 TCCCTTCTCCCCTCCCTTCTCTC
1 TCCCTTCTCCCCTCCC-TCTCTC
* *
65431890 TCCCTTCTCTCTTCCCTCTCTC
1 TCCCTTCTCCCCTCCCTCTCTC
*
65431912 TTCCTT
1 TCCCTT
65431918 TTTTTCTTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
22 11 0.44
23 14 0.56
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (22 bp):
TCCCTTCTCCCCTCCCTCTCTC
Found at i:65431894 original size:11 final size:11
Alignment explanation
Indices: 65431867--65431917 Score: 59
Period size: 11 Copynumber: 4.5 Consensus size: 11
65431857 TGGCCGGATT
*
65431867 TCCCTTCTCCCC
1 TCCCTTCT-CTC
65431879 TCCCTTCTCTC
1 TCCCTTCTCTC
65431890 TCCCTTCTCTC
1 TCCCTTCTCTC
65431901 TTCCC-TCTCTC
1 -TCCCTTCTCTC
*
65431912 TTCCTT
1 TCCCTT
65431918 TTTTTCTTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
10 3 0.09
11 20 0.57
12 12 0.34
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (11 bp):
TCCCTTCTCTC
Found at i:65432406 original size:3 final size:3
Alignment explanation
Indices: 65432391--65432452 Score: 61
Period size: 3 Copynumber: 20.0 Consensus size: 3
65432381 GTCATTTTTA
* * * *
65432391 TAT TAT TAG TAT TAT TAG TAT TAC TAT TAT TAT TAT TAT GTAT TAG
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT
*
65432437 TAT ATAT TTT TAT TAT
1 TAT -TAT TAT TAT TAT
65432453 GTACGCGTAT
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
3 41 0.87
4 6 0.13
ACGTcount: A:0.32, C:0.02, G:0.06, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:65432449 original size:23 final size:22
Alignment explanation
Indices: 65432394--65432455 Score: 81
Period size: 23 Copynumber: 2.8 Consensus size: 22
65432384 ATTTTTATAT
*
65432394 TATTAGTATTATTA-GTATTAC
1 TATTATTATTATTATGTATTAC
*
65432415 TATTATTATTATTATGTATTAG
1 TATTATTATTATTATGTATTAC
*
65432437 TATATATTTTTATTATGTA
1 TAT-TATTATTATTATGTA
65432456 CGCGTATACA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 13 0.36
22 9 0.25
23 14 0.39
ACGTcount: A:0.32, C:0.02, G:0.08, T:0.58
Consensus pattern (22 bp):
TATTATTATTATTATGTATTAC
Found at i:65432462 original size:23 final size:23
Alignment explanation
Indices: 65432418--65432463 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
65432408 GTATTACTAT
**
65432418 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTACGAGTATA
* *
65432441 TATTTTTATTATGTACGCGTATA
1 TATTATTATTATGTACGAGTATA
65432464 CATATATATT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.30, C:0.04, G:0.11, T:0.54
Consensus pattern (23 bp):
TATTATTATTATGTACGAGTATA
Found at i:65432527 original size:25 final size:24
Alignment explanation
Indices: 65432480--65432527 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
65432470 TATTTTTTCA
*
65432480 TATTTAATATTTTTATTTCATTTT
1 TATTTAATATTTTTATTTAATTTT
65432504 TATTCTAATA-TTTTATTATAATTT
1 TATT-TAATATTTTTATT-TAATTT
65432528 ATATATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (24 bp):
TATTTAATATTTTTATTTAATTTT
Found at i:65434193 original size:43 final size:44
Alignment explanation
Indices: 65434119--65434201 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 44
65434109 CAAAATTTTT
* * * *
65434119 GGGAGAAAAATAAAAGGCTCAGTTGAATATTCTACAAATTGTGG
1 GGGAAAAAAATAAAAGCCTCAATAGAATATTCTACAAATTGTGG
* *
65434163 GGGAAAAAAAT-AAAGCCTCAATAGAGTATTCTACTAATT
1 GGGAAAAAAATAAAAGCCTCAATAGAATATTCTACAAATT
65434202 CCTGCGATGG
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
43 23 0.70
44 10 0.30
ACGTcount: A:0.43, C:0.11, G:0.20, T:0.25
Consensus pattern (44 bp):
GGGAAAAAAATAAAAGCCTCAATAGAATATTCTACAAATTGTGG
Found at i:65440413 original size:69 final size:69
Alignment explanation
Indices: 65440324--65440462 Score: 260
Period size: 69 Copynumber: 2.0 Consensus size: 69
65440314 CAAGACTCTA
*
65440324 TCAGCCCTACCACCACTACAAAACCTGCTGAAAATCCTACAGCCACTATTATTCCTGTTTTGGAA
1 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTATTATTCCTGTTTTGGAA
65440389 CCTG
66 CCTG
*
65440393 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
1 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTATTATTCCTGTTTTGGAA
65440458 CCTG
66 CCTG
65440462 T
1 T
65440463 TTTTCCTATC
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.29, C:0.32, G:0.12, T:0.27
Consensus pattern (69 bp):
TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTATTATTCCTGTTTTGGAA
CCTG
Found at i:65441850 original size:129 final size:137
Alignment explanation
Indices: 65441600--65441859 Score: 320
Period size: 129 Copynumber: 1.9 Consensus size: 137
65441590 GCTTCTGTTT
* * *
65441600 TCAGGCACACTTAGGCACATGCCTTCACCATACTGCTTAGCTCATACATAGACACAGAAACAGTA
1 TCAGGCACACCTAGGCACATGCCTTCACAATACTGCTTAGCGCATACATAGACACAGAAACAGTA
*
65441665 ATCTCCAGACATGGACAATTCAATAGGAAACAACAAAAACAAAAGGGTCCAATTATTAGAAATGC
66 ATCTCCAAACATGGAC-A--CAATAGGAAACAACAAAAACAAAAGGGTCCAATTATTAGAAATGC
65441730 ACACTGACAA
128 ACACTGACAA
* *
65441740 TCAGGCACACCTAGGCACATGCCTTCACAATACTGCTT-G-GC-TA-A-A-ACATAGAAATAGT-
1 TCAGGCACACCTAGGCACATGCCTTCACAATACTGCTTAGCGCATACATAGACACAGAAACAGTA
* * * ** * *
65441798 GTCTCCAAACATGGAC-CATTAGGAAACCATGAAACCAAGAGGGTCCAATTATTAGAAATGCA
66 ATCTCCAAACATGGACACAATAGGAAACAACAAAAACAAAAGGGTCCAATTATTAGAAATGCA
65441860 TATTGCTAAG
Statistics
Matches: 107, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
129 40 0.37
133 14 0.13
134 11 0.10
135 1 0.01
136 1 0.01
137 2 0.02
138 1 0.01
139 1 0.01
140 36 0.34
ACGTcount: A:0.40, C:0.24, G:0.17, T:0.20
Consensus pattern (137 bp):
TCAGGCACACCTAGGCACATGCCTTCACAATACTGCTTAGCGCATACATAGACACAGAAACAGTA
ATCTCCAAACATGGACACAATAGGAAACAACAAAAACAAAAGGGTCCAATTATTAGAAATGCACA
CTGACAA
Found at i:65442690 original size:25 final size:25
Alignment explanation
Indices: 65442656--65442705 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
65442646 ATCATGGCAG
65442656 AAAGAACTATTTTCAACAAACCAAT
1 AAAGAACTATTTTCAACAAACCAAT
65442681 AAAGAACTATTTTCAACAAACCAAT
1 AAAGAACTATTTTCAACAAACCAAT
65442706 CTCATTAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.52, C:0.20, G:0.04, T:0.24
Consensus pattern (25 bp):
AAAGAACTATTTTCAACAAACCAAT
Found at i:65444656 original size:6 final size:6
Alignment explanation
Indices: 65444647--65444680 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
65444637 AAAAGCACCA
65444647 GCAACG GCAACG GCAACG GCAACG GCAACG GCAA
1 GCAACG GCAACG GCAACG GCAACG GCAACG GCAA
65444681 AGCTGAGCCG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.35, C:0.32, G:0.32, T:0.00
Consensus pattern (6 bp):
GCAACG
Found at i:65457643 original size:39 final size:39
Alignment explanation
Indices: 65457598--65457677 Score: 142
Period size: 39 Copynumber: 2.1 Consensus size: 39
65457588 GGGGTTTTAA
*
65457598 TTAGAAAGAGATTTCAGTTAATCAACCTAGAGTCAGTTG
1 TTAGAAAGAGATTTCAATTAATCAACCTAGAGTCAGTTG
*
65457637 TTAGAAAGAGATTTCAATTAATCAACCTAGAGTTAGTTG
1 TTAGAAAGAGATTTCAATTAATCAACCTAGAGTCAGTTG
65457676 TT
1 TT
65457678 CTTACTCTCG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (39 bp):
TTAGAAAGAGATTTCAATTAATCAACCTAGAGTCAGTTG
Found at i:65458643 original size:22 final size:22
Alignment explanation
Indices: 65458582--65458635 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
65458572 ACAACTCAAG
*
65458582 GCCGTAAATAGGACAGCACATA
1 GCCGTAAATAAGACAGCACATA
* *
65458604 GCCTTAAACAAGACAGCACATA
1 GCCGTAAATAAGACAGCACATA
65458626 GCCGTAAATA
1 GCCGTAAATA
65458636 TTGCAGCAAC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.43, C:0.24, G:0.19, T:0.15
Consensus pattern (22 bp):
GCCGTAAATAAGACAGCACATA
Found at i:65458866 original size:22 final size:22
Alignment explanation
Indices: 65458838--65458897 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
65458828 GCAAATACGT
*
65458838 TTGGCACACAACTATA-ATTAGG
1 TTGGCACACAACCATATA-TAGG
* *
65458860 TTGGCACAGAGCCATATATAGG
1 TTGGCACACAACCATATATAGG
65458882 TTGGCACA-AAGCCATA
1 TTGGCACACAA-CCATA
65458898 ATCAGAATAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
21 1 0.03
22 30 0.94
23 1 0.03
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (22 bp):
TTGGCACACAACCATATATAGG
Found at i:65459108 original size:41 final size:42
Alignment explanation
Indices: 65459044--65459168 Score: 171
Period size: 42 Copynumber: 3.0 Consensus size: 42
65459034 TAAAAGCCAC
* * * *
65459044 CGGCGAATCCACGATCGTCAAGCAACCATACGATCCTTAA-T
1 CGGCGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATT
*
65459085 CGGCGGATCCACGGTCGTTAAGCAACCATGCGATCCTCAATT
1 CGGCGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATT
** *
65459127 CGATGGATCCACGGTCATCAAGCAACCATGCGATCCTCAATT
1 CGGCGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATT
65459169 TCTTCCTCCG
Statistics
Matches: 74, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
41 35 0.47
42 39 0.53
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.21
Consensus pattern (42 bp):
CGGCGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATT
Found at i:65459476 original size:54 final size:54
Alignment explanation
Indices: 65459406--65459740 Score: 284
Period size: 54 Copynumber: 6.2 Consensus size: 54
65459396 TTCACCTTAC
* * * * *
65459406 AAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCGGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAACT
* * * ** *
65459460 AATGGTATTTCT-GTAAATTTTGA-AAGTCAAAGGTATTTTTGTAATTTTGTA-AAATT
1 AAGGGTATTT-TGGT-AATTTT-ACAAATCAAGGGTATTTCGGTAA-TTT-TACAAACT
* * ** * *
65459516 AAGGGTATTTCT-GTAATTTTCCAAATCAAGAGTATTTTAGTAATTTTCCAAATT
1 AAGGGTATTT-TGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAACT
* * * **
65459570 AGGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAGTT
1 AAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAACT
* * * * * * *
65459624 AAGGGTATTTTAGTAATTTTATAAGTCGAGGGTATTTCGATAATTTCACAAACC
1 AAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAACT
* *
65459678 AAGGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTAGGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTACAAATC-AAGGGTATTTCGGTAATTTTACAAACT
*
65459732 AGGGGTATT
1 AAGGGTATT
65459741 CAGTAATTTT
Statistics
Matches: 227, Mismatches: 45, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
53 3 0.01
54 158 0.70
55 44 0.19
56 20 0.09
57 2 0.01
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (54 bp):
AAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAACT
Found at i:65459494 original size:28 final size:28
Alignment explanation
Indices: 65459436--65459535 Score: 98
Period size: 28 Copynumber: 3.6 Consensus size: 28
65459426 ACAAACCAAG
* * *
65459436 GGTATTTCGGTAA-TTT-TACAAACCAAT
1 GGTATTTCTGTAATTTTGTA-AAATCAAA
*
65459463 GGTATTTCTGTAAATTTTG-AAAGTCAAA
1 GGTATTTCTGT-AATTTTGTAAAATCAAA
* * *
65459491 GGTATTTTTGTAATTTTGTAAAATTAAG
1 GGTATTTCTGTAATTTTGTAAAATCAAA
65459519 GGTATTTCTGTAATTTT
1 GGTATTTCTGTAATTTT
65459536 CCAAATCAAG
Statistics
Matches: 60, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
27 17 0.28
28 39 0.65
29 4 0.07
ACGTcount: A:0.31, C:0.07, G:0.17, T:0.45
Consensus pattern (28 bp):
GGTATTTCTGTAATTTTGTAAAATCAAA
Found at i:65459615 original size:81 final size:80
Alignment explanation
Indices: 65459408--65459775 Score: 280
Period size: 81 Copynumber: 4.5 Consensus size: 80
65459398 CACCTTACAA
* * * * *
65459408 GGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCGGTAATTTTACAAACCAATGGTATTTCT-
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTT-TA
* * *
65459472 GTAAATTTTGAAAGTCAA
65 GT-AATTTTCAAA-TTAG
* * ** * * *
65459490 AGGTATTTTTGTAATTTTGTA-AAATTAAGGGTATTTCTGTAATTTTCCAAATCAAGAGTATTTT
1 GGGTATTTTGGTAA-TTT-TACAAACCAAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTT
65459554 AGTAATTTTCCAAATTAG
64 AGTAATTTT-CAAATTAG
* * * * *
65459572 GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAGTTAAGGGTATTTTAG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTTAG
* *
65459637 TAATTTT-ATAAGTCG
66 TAATTTTCA-AATTAG
* * * * *
65459652 AGGGTATTTCGATAATTTCACAAACCAAGGGTATTTTGGTAATTTTACAAA-CTAGGGGTA-TTT
1 -GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTACAAATC-AAGGGTATTTT
*
65459715 AGGTAATTTTACAAACTAG
64 A-GTAATTTT-CAAATTAG
** ** * * *
65459734 GGGTA-TTCAGTAATTTTGTAAACTAAGAGTATTTCAGTAATT
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATT
65459776 CTACCCTACA
Statistics
Matches: 228, Mismatches: 47, Indels: 24
0.76 0.16 0.08
Matches are distributed among these distances:
79 1 0.00
80 38 0.17
81 109 0.48
82 36 0.16
83 42 0.18
84 2 0.01
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.40
Consensus pattern (80 bp):
GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTTAG
TAATTTTCAAATTAG
Found at i:65459644 original size:27 final size:27
Alignment explanation
Indices: 65459405--65459750 Score: 242
Period size: 27 Copynumber: 12.8 Consensus size: 27
65459395 TTTCACCTTA
* * * * *
65459405 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAT
** *
65459432 CAAGGGTATTTCGGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAT
* *
65459459 CAATGGTATTTCT-GTAAATTTTGA-AAGT
1 CAAGGGTATTT-TAGT-AATTTT-ACAAAT
* *
65459487 CAAAGGTATTTTTGTAATTTTGTA-AAAT
1 CAAGGGTATTTTAGTAA-TTT-TACAAAT
* *
65459515 TAAGGGTATTTCT-GTAATTTTCCAAAT
1 CAAGGGTATTT-TAGTAATTTTACAAAT
* *
65459542 CAAGAGTATTTTAGTAATTTTCCAAAT
1 CAAGGGTATTTTAGTAATTTTACAAAT
* * *
65459569 TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTACAAAT
* * *
65459596 CGAGGGTATTTCAGTAATTTTACAAGT
1 CAAGGGTATTTTAGTAATTTTACAAAT
* * *
65459623 TAAGGGTATTTTAGTAATTTTATAAGT
1 CAAGGGTATTTTAGTAATTTTACAAAT
* * * *
65459650 CGAGGGTA-TTTCGATAATTTCACAAAC
1 CAAGGGTATTTTAG-TAATTTTACAAAT
*
65459677 CAAGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTAGTAATTTTACAAAT
*
65459703 CTAGGGGTA-TTTAGGTAATTTTACAAA-
1 C-AAGGGTATTTTA-GTAATTTTACAAAT
* *
65459730 CTAGGGGTA-TTCAGTAATTTT
1 C-AAGGGTATTTTAGTAATTTT
65459751 GTAAACTAAG
Statistics
Matches: 263, Mismatches: 43, Indels: 27
0.79 0.13 0.08
Matches are distributed among these distances:
26 18 0.07
27 198 0.75
28 44 0.17
29 3 0.01
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTACAAAT
Found at i:65459756 original size:26 final size:26
Alignment explanation
Indices: 65459554--65459775 Score: 135
Period size: 27 Copynumber: 8.3 Consensus size: 26
65459544 AGAGTATTTT
* * *
65459554 AGTAATTTTCCAAATTAGGGGTATTTT
1 AGTAATTTTACAAACTAGGGGTA-TTC
* *
65459581 GGTAATTTTACAAA-TCGAGGGTATTTC
1 AGTAATTTTACAAACTAG-GGGTA-TTC
** * *
65459608 AGTAATTTTACAAGTTAAGGGTATTTT
1 AGTAATTTTACAAACTAGGGGTA-TTC
* * *
65459635 AGTAATTTTA-TAAGTCGAGGGTATTTC
1 AGTAATTTTACAAACTAG-GGGTA-TTC
* * * *
65459662 -GATAATTTCACAAACCAAGGGTATTTT
1 AG-TAATTTTACAAACTAGGGGTA-TTC
* *
65459689 GGTAATTTTACAAACTAGGGGTATTT
1 AGTAATTTTACAAACTAGGGGTATTC
65459715 AGGTAATTTTACAAACTAGGGGTATTC
1 A-GTAATTTTACAAACTAGGGGTATTC
** * *
65459742 AGTAATTTTGTAAACTAAGAGTATTTC
1 AGTAATTTTACAAACTAGGGGTA-TTC
65459769 AGTAATT
1 AGTAATT
65459776 CTACCCTACA
Statistics
Matches: 156, Mismatches: 31, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
26 26 0.17
27 126 0.81
28 4 0.03
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (26 bp):
AGTAATTTTACAAACTAGGGGTATTC
Found at i:65459794 original size:27 final size:27
Alignment explanation
Indices: 65459764--65459840 Score: 118
Period size: 27 Copynumber: 2.9 Consensus size: 27
65459754 AACTAAGAGT
65459764 ATTTCAGTAATTCTACCCTACAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
* *
65459791 ATTTTAGTAATTCTACCCTACAGGGGT
1 ATTTCAGTAATTCTACCCTACAGGGGC
* *
65459818 ATTTCAGTAATACTAGCCTACAG
1 ATTTCAGTAATTCTACCCTACAG
65459841 ATATGAGATT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTACAGGGGC
Found at i:65462427 original size:25 final size:25
Alignment explanation
Indices: 65462393--65462443 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
65462383 TACAAAAATA
65462393 TATGCTAACCCATCCCATCCAACCC
1 TATGCTAACCCATCCCATCCAACCC
65462418 TATGCTAACCCATCCCATCCAACCC
1 TATGCTAACCCATCCCATCCAACCC
65462443 T
1 T
65462444 GCACTTGCCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.27, C:0.47, G:0.04, T:0.22
Consensus pattern (25 bp):
TATGCTAACCCATCCCATCCAACCC
Found at i:65462618 original size:22 final size:22
Alignment explanation
Indices: 65462560--65462610 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
65462550 GCTCAAGGTC
* *
65462560 GTAAACAGGATAGCATATAGCA
1 GTAAACAAGATAGCACATAGCA
*
65462582 GTAAACAAGATAGCACATAGCC
1 GTAAACAAGATAGCACATAGCA
65462604 GTAAACA
1 GTAAACA
65462611 TTGAAGCAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.47, C:0.18, G:0.20, T:0.16
Consensus pattern (22 bp):
GTAAACAAGATAGCACATAGCA
Found at i:65463078 original size:41 final size:41
Alignment explanation
Indices: 65463020--65463176 Score: 224
Period size: 41 Copynumber: 3.8 Consensus size: 41
65463010 AAAAGCCACC
65463020 GGTGGATCCACGATCGTCAAGCAACCATGCGATCCTTAATT
1 GGTGGATCCACGATCGTCAAGCAACCATGCGATCCTTAATT
* *
65463061 GGTGGATCTACGGTCGTCAAGCAACCATGCGATCCTTAATT
1 GGTGGATCCACGATCGTCAAGCAACCATGCGATCCTTAATT
* * * * *
65463102 GGTGGATCTATGATCGTCAAGCAACCATGCGATTCTCAATC
1 GGTGGATCCACGATCGTCAAGCAACCATGCGATCCTTAATT
* * *
65463143 GGTGGATCCACGGTCATCAAGCAACCATACGATC
1 GGTGGATCCACGATCGTCAAGCAACCATGCGATC
65463177 TTCAATTTCT
Statistics
Matches: 103, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 103 1.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (41 bp):
GGTGGATCCACGATCGTCAAGCAACCATGCGATCCTTAATT
Found at i:65463521 original size:27 final size:25
Alignment explanation
Indices: 65463420--65463727 Score: 145
Period size: 27 Copynumber: 11.4 Consensus size: 25
65463410 TTTCACCATA
* ** *
65463420 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGT-AAT-TTTAAAT
* *
65463447 CAAGGGTATTTCGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTT--AAAT
* **
65463474 CAATGGTATTTTTATAAATTTTGAAAGT
1 CAAGGGTATTTTGGT-AATTTT-AAA-T
*
65463502 CAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAA-TTT-TAAAT
* *
65463529 TAGGGGTATTTCT-GTAATTTTCCAAAT
1 CAAGGGTATTT-TGGTAATTTT--AAAT
* * *
65463556 AAAGTGTATTTCGGTAATTTTCCAAAT
1 CAAGGGTATTTTGGTAATTTT--AAAT
* * *
65463583 TAGGGGTAATTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTT--AAAT
* *
65463610 CGAGGGTATTTTGGTAATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTA-A-AT
* *
65463637 CAAGGGTATTTCGGTAATTTTACAAA
1 CAAGGGTATTTTGGTAATTTTA-AAT
*
65463663 CTAGGGGTATTTTGGTAATTTTACAAAT
1 C-AAGGGTATTTTGGTAATTTT--AAAT
* *
65463691 C-AGGTGTA-TTTAGTAATTTTGTAAAG
1 CAAGG-GTATTTTGGTAA-TTT-TAAAT
65463717 CAAGGGTATTT
1 CAAGGGTATTT
65463728 CAGTAATTCT
Statistics
Matches: 222, Mismatches: 39, Indels: 40
0.74 0.13 0.13
Matches are distributed among these distances:
25 3 0.01
26 24 0.11
27 163 0.73
28 30 0.14
29 2 0.01
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.40
Consensus pattern (25 bp):
CAAGGGTATTTTGGTAATTTTAAAT
Found at i:65463573 original size:54 final size:54
Alignment explanation
Indices: 65463503--65463735 Score: 177
Period size: 54 Copynumber: 4.3 Consensus size: 54
65463493 TTTGAAAGTC
** ** * *
65463503 AAGGGTATTTTTGTAATTTTGTAAATTAGGGGT-ATTTCTGTAATTTTCCAAATA
1 AAGGGTATTTCGGTAATTTTCCAAATTAGGGGTAATTT-GGTAATTTTACAAATA
* *
65463557 AAGTGTATTTCGGTAATTTTCCAAATTAGGGGTAATTTGGTAATTTTACAAATC
1 AAGGGTATTTCGGTAATTTTCCAAATTAGGGGTAATTTGGTAATTTTACAAATA
* * * ** * *
65463611 GAGGGTATTTTGGTAATTTTACAGGTCAAGGGT-ATTTCGGTAATTTTACAAACT-
1 AAGGGTATTTCGGTAATTTTCCAAATTAGGGGTAATTT-GGTAATTTTACAAA-TA
* * * * * * ** **
65463665 AGGGGTATTTTGGTAATTTTACAAATCAGGTGT-ATTTAGTAATTTTGTAAAGC
1 AAGGGTATTTCGGTAATTTTCCAAATTAGGGGTAATTTGGTAATTTTACAAATA
*
65463718 AAGGGTATTTCAGTAATT
1 AAGGGTATTTCGGTAATT
65463736 CTACCCTGTA
Statistics
Matches: 146, Mismatches: 29, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
53 30 0.21
54 111 0.76
55 5 0.03
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (54 bp):
AAGGGTATTTCGGTAATTTTCCAAATTAGGGGTAATTTGGTAATTTTACAAATA
Found at i:65463617 original size:81 final size:79
Alignment explanation
Indices: 65463505--65463735 Score: 246
Period size: 81 Copynumber: 2.9 Consensus size: 79
65463495 TGAAAGTCAA
* * ** * * *
65463505 GGGTATTTTTGTAATTTTGTAAATTAGGGGTATTTCTGTAATTTTCCAAATAAAGTGTATTTCGG
1 GGGTAATTTGGTAATTTTACAAATCA-GGGTATTT-TGTAATTTTACAAATAAAGGGTATTTCGG
* *
65463570 TAATTTTCCAAATTAG
64 TAATTTTACAAACTAG
** *
65463586 GGGTAATTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAGGTCAAGGGTATTTCGG
1 GGGTAATTTGGTAATTTTACAAATC-AGGGTATTTT-GTAATTTTACAAATAAAGGGTATTTCGG
65463651 TAATTTTACAAACTAG
64 TAATTTTACAAACTAG
* * ** ** *
65463667 GGGTATTTTGGTAATTTTACAAATCAGGTGTATTTAGTAATTTTGTAAAGCAAGGGTATTTCAGT
1 GGGTAATTTGGTAATTTTACAAATCAGG-GTATTTTGTAATTTTACAAATAAAGGGTATTTCGGT
65463732 AATT
65 AATT
65463736 CTACCCTGTA
Statistics
Matches: 127, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
80 31 0.24
81 95 0.75
82 1 0.01
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.42
Consensus pattern (79 bp):
GGGTAATTTGGTAATTTTACAAATCAGGGTATTTTGTAATTTTACAAATAAAGGGTATTTCGGTA
ATTTTACAAACTAG
Found at i:65463786 original size:27 final size:27
Alignment explanation
Indices: 65463720--65463799 Score: 90
Period size: 27 Copynumber: 3.0 Consensus size: 27
65463710 TGTAAAGCAA
**
65463720 GGGTATTTCAGTAATTCTACCCTGTAG
1 GGGTATTTCAGTAATTCTACCCTACAG
*
65463747 GGGCT-TTTTAGTAATTCTACCCTACAG
1 GGG-TATTTCAGTAATTCTACCCTACAG
* * *
65463774 GGGTATTACAGTAATACTAGCCTACA
1 GGGTATTTCAGTAATTCTACCCTACA
65463800 AATATGAGAT
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
26 1 0.02
27 42 0.95
28 1 0.02
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (27 bp):
GGGTATTTCAGTAATTCTACCCTACAG
Found at i:65465178 original size:22 final size:21
Alignment explanation
Indices: 65465115--65465171 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 21
65465105 AATTTAGCCA
65465115 TTTTTAATTTATTGCATTTTTTTG
1 TTTTTAATTTATT---TTTTTTTG
*
65465139 TTTTTAGTTTAATTTTTTTTTG
1 TTTTTAATTT-ATTTTTTTTTG
65465161 TTTTCTAATTT
1 TTTT-TAATTT
65465172 TTCTTTTGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
22 12 0.41
23 5 0.17
24 9 0.31
25 3 0.10
ACGTcount: A:0.16, C:0.04, G:0.07, T:0.74
Consensus pattern (21 bp):
TTTTTAATTTATTTTTTTTTG
Found at i:65467423 original size:47 final size:47
Alignment explanation
Indices: 65467370--65467827 Score: 844
Period size: 47 Copynumber: 9.7 Consensus size: 47
65467360 TTAGGATTCT
65467370 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
65467417 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
65467464 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
65467511 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
65467558 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
65467605 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
65467652 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
65467699 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
65467746 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
65467793 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
65467828 TCCCGAAGGG
Statistics
Matches: 401, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 401 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:65468002 original size:37 final size:37
Alignment explanation
Indices: 65467946--65468024 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
65467936 CCGAGCTCTA
* * *
65467946 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
65467983 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
65468020 AAGAC
1 AAGAC
65468025 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:65468484 original size:46 final size:46
Alignment explanation
Indices: 65468431--65468522 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
65468421 GTTTCCTCTG
65468431 TTTTATAGATCTCATTGCGAAGCTACAGGCTCGGGGATCGTCAGCA
1 TTTTATAGATCTCATTGCGAAGCTACAGGCTCGGGGATCGTCAGCA
65468477 TTTTATAGATCTCATTGCGAAGCTACAGGCTCGGGGATCGTCAGCA
1 TTTTATAGATCTCATTGCGAAGCTACAGGCTCGGGGATCGTCAGCA
65468523 ACTAGTCACA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (46 bp):
TTTTATAGATCTCATTGCGAAGCTACAGGCTCGGGGATCGTCAGCA
Found at i:65469985 original size:43 final size:43
Alignment explanation
Indices: 65469937--65470039 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
65469927 TTGGTTTTCA
65469937 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
65469980 GCACTAAGTGTGCGGGCAATTAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
65470023 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
65470040 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.21, C:0.16, G:0.36, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:65470054 original size:29 final size:29
Alignment explanation
Indices: 65470021--65470094 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
65470011 GTTGTGAGAT
* *
65470021 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
65470050 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
65470079 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
65470095 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:65470512 original size:39 final size:40
Alignment explanation
Indices: 65470405--65470547 Score: 130
Period size: 40 Copynumber: 3.6 Consensus size: 40
65470395 TGAATGATGT
* * * * * *
65470405 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGC-GAGTTACTAAAA
* * * **
65470445 CCGGACTAAGAT-CCGAAGCCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTGGTGCGAGTTACTAAAA
*
65470485 TCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAAA
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAAA
65470524 CCGGGCTAAGTCCCGAAGAGCATT
1 CCGGGCTAAGTCCCGAAG-GCATT
65470548 CATGCTAGTG
Statistics
Matches: 84, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
39 33 0.39
40 38 0.45
41 13 0.15
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAAA
Found at i:65470569 original size:40 final size:40
Alignment explanation
Indices: 65470524--65470678 Score: 157
Period size: 40 Copynumber: 3.9 Consensus size: 40
65470514 GTTACTAAAA
*
65470524 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTTT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
* * * *
65470564 TCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGAGGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
** * * * * * *
65470604 CCGAACTAAGTTCTGAAGAGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
* * * *
65470644 CCGGGCTAGGTCCTGAAGAGCAATCATGCTGGTGA
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
65470679 CGTGTATTCG
Statistics
Matches: 95, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 95 1.00
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
Found at i:65473588 original size:47 final size:47
Alignment explanation
Indices: 65473531--65473835 Score: 513
Period size: 47 Copynumber: 6.4 Consensus size: 47
65473521 TATTTGAATA
65473531 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
65473578 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
65473625 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
65473672 AATGTGAAAGTGTATATATATGTGATAAGGCCCAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
65473721 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
65473770 AATGTGAAAGTGTATATATATGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
65473817 AATATGAACA-TGTATATAT
1 AATGTGAA-AGTGTATATAT
65473836 NNNNNNNNNN
Statistics
Matches: 249, Mismatches: 6, Indels: 6
0.95 0.02 0.02
Matches are distributed among these distances:
47 154 0.62
48 1 0.00
49 94 0.38
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:65473718 original size:96 final size:96
Alignment explanation
Indices: 65473531--65473835 Score: 512
Period size: 96 Copynumber: 3.2 Consensus size: 96
65473521 TATTTGAATA
65473531 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
65473594 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCCAATGGCCGATGTGATG
65473625 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
65473690 TATGTGATAAGGCCCAATGGCCGATGTGATG
66 TATGTGATAAGGCCCAATGGCCGATGTGATG
65473721 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
65473786 TATA--TGATAAGGCCGAATGGCCAATGTGATG
64 TATATGTGATAAGGCCCAATGGCCGATGTGATG
*
65473817 AATATGAACA-TGTATATAT
1 AATGTGAA-AGTGTATATAT
65473836 NNNNNNNNNN
Statistics
Matches: 202, Mismatches: 4, Indels: 10
0.94 0.02 0.05
Matches are distributed among these distances:
94 66 0.33
96 80 0.40
97 1 0.00
98 55 0.27
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.30
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCCAATGGCCGATGTGATG
Found at i:65477890 original size:3 final size:3
Alignment explanation
Indices: 65477868--65477929 Score: 65
Period size: 3 Copynumber: 20.7 Consensus size: 3
65477858 TTTTATTTAG
* * *
65477868 TTA TTA ATA TTA TTA CTA TTA TTA TTA TTA TTA TTA TGA TTA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
65477914 TT- TCT- TTA TTA TTA TT
1 TTA T-TA TTA TTA TTA TT
65477930 TTCTTTTTAT
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
2 2 0.04
3 45 0.90
4 3 0.06
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:65477930 original size:18 final size:17
Alignment explanation
Indices: 65477868--65477940 Score: 57
Period size: 18 Copynumber: 4.5 Consensus size: 17
65477858 TTTTATTTAG
* *
65477868 TTATTAATATTATTACT
1 TTATTATTATTATTTCT
*
65477885 ATTATTATTATTA-TT-A
1 -TTATTATTATTATTTCT
*
65477901 TTATGATTATTTATTTCT
1 TTATTATTA-TTATTTCT
65477919 TTATTATTA-T-TTTCT
1 TTATTATTATTATTTCT
65477934 TT-TTATT
1 TTATTATT
65477941 GGTTTTACTA
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
14 5 0.11
15 15 0.33
16 4 0.09
17 3 0.07
18 19 0.41
ACGTcount: A:0.27, C:0.04, G:0.01, T:0.67
Consensus pattern (17 bp):
TTATTATTATTATTTCT
Found at i:65477946 original size:15 final size:15
Alignment explanation
Indices: 65477886--65477940 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
65477876 ATTATTACTA
*
65477886 TTATTATTATTATTAT
1 TTATTATTATT-TTCT
65477902 TATGATTATT-TATTTCT
1 T-T-ATTATTAT-TTTCT
65477919 TTATTATTATTTTCT
1 TTATTATTATTTTCT
65477934 TT-TTATT
1 TTATTATT
65477941 GGTTTTACTA
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
14 5 0.15
15 13 0.38
16 3 0.09
17 6 0.18
18 7 0.21
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.71
Consensus pattern (15 bp):
TTATTATTATTTTCT
Found at i:65482737 original size:51 final size:52
Alignment explanation
Indices: 65482622--65482798 Score: 215
Period size: 51 Copynumber: 3.5 Consensus size: 52
65482612 ACTAGTGACT
* * *
65482622 CAAGTATGGTACTATGTGAAGGCCACTTTG-GAA-AGAGATAGC-TTGGTAA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
*
65482671 CAAGTGTGGCACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
* * *
65482723 CAAGTGT-GTACTATGTAAAGGCCACTTTGTGAAG-AAGGTAGCTTT-GACTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTC-A
*
65482773 CAAAG-GTGGTACTATGTGCAGGCCAC
1 C-AAGTGTGGTACTATGTGAAGGCCAC
65482799 CAGGTATCCA
Statistics
Matches: 112, Mismatches: 10, Indels: 10
0.85 0.08 0.08
Matches are distributed among these distances:
49 30 0.27
50 17 0.15
51 52 0.46
52 13 0.12
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (52 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
Found at i:65493059 original size:24 final size:24
Alignment explanation
Indices: 65493026--65493071 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
65493016 AGGAAGGATG
* *
65493026 AAGATGAAAAATAATACTATTTTT
1 AAGATAAAAAAGAATACTATTTTT
*
65493050 AAGATAAAAAAGAATATTATTT
1 AAGATAAAAAAGAATACTATTT
65493072 ATCCAATATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.54, C:0.02, G:0.09, T:0.35
Consensus pattern (24 bp):
AAGATAAAAAAGAATACTATTTTT
Found at i:65493354 original size:32 final size:32
Alignment explanation
Indices: 65493318--65493382 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
65493308 AATATAAAGT
65493318 ATGAAATATAATGCAGTTTTTCATTTTTTAGG
1 ATGAAATATAATGCAGTTTTTCATTTTTTAGG
*
65493350 ATGAAATATAATGTAGTTTTTCATTTTTTAGG
1 ATGAAATATAATGCAGTTTTTCATTTTTTAGG
65493382 A
1 A
65493383 CTAATTTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.32, C:0.05, G:0.15, T:0.48
Consensus pattern (32 bp):
ATGAAATATAATGCAGTTTTTCATTTTTTAGG
Found at i:65493864 original size:22 final size:22
Alignment explanation
Indices: 65493823--65493864 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
65493813 TTATATATTA
* **
65493823 TGCTTTATATAAAATTATTAAT
1 TGCTGTATATAAAAGAATTAAT
65493845 TGCTGTATATAAAAGAATTA
1 TGCTGTATATAAAAGAATTA
65493865 CCCGCTATCC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.43, C:0.05, G:0.10, T:0.43
Consensus pattern (22 bp):
TGCTGTATATAAAAGAATTAAT
Found at i:65495120 original size:27 final size:27
Alignment explanation
Indices: 65495059--65495146 Score: 74
Period size: 27 Copynumber: 3.2 Consensus size: 27
65495049 ATAATAGATG
*
65495059 ATAAAATAGT-AATAATAATGAATGCATAA
1 ATAAAA-AGTAAATAATAATGAAAG-A-AA
65495088 AT-AAAA-TAAATAATCAATGAAAGAAA
1 ATAAAAAGTAAATAAT-AATGAAAGAAA
* * *
65495114 ATAAAAAGTTAAGAAAAATGAAAGAATA
1 ATAAAAAGTAAATAATAATGAAAGAA-A
65495142 ATAAA
1 ATAAA
65495147 TAAATGAATA
Statistics
Matches: 50, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
26 5 0.10
27 22 0.44
28 21 0.42
29 2 0.04
ACGTcount: A:0.66, C:0.02, G:0.10, T:0.22
Consensus pattern (27 bp):
ATAAAAAGTAAATAATAATGAAAGAAA
Found at i:65495231 original size:39 final size:39
Alignment explanation
Indices: 65495164--65495271 Score: 110
Period size: 39 Copynumber: 2.7 Consensus size: 39
65495154 ATACAAGGAT
* * *
65495164 TAAAAAAAAAAGTAAATAAATAAACAAATGAACAATATA
1 TAAAAAAATAAGTAAATAAACAAACAAATGAACAAAATA
* * * *
65495203 TAAATAAATAAGTAAATGAACAAGCAAATGAATAAAATA
1 TAAAAAAATAAGTAAATAAACAAACAAATGAACAAAATA
*
65495242 -AAAGAAATAATGAATAAATAAACAAACAAA
1 TAAAAAAATAA-G--TAAATAAACAAACAAA
65495272 CAAATGAATG
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
38 9 0.16
39 33 0.59
41 14 0.25
ACGTcount: A:0.69, C:0.06, G:0.07, T:0.18
Consensus pattern (39 bp):
TAAAAAAATAAGTAAATAAACAAACAAATGAACAAAATA
Found at i:65495789 original size:31 final size:31
Alignment explanation
Indices: 65495751--65495810 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
65495741 AAAAAAAAAA
65495751 AAAAAAACTAAAAAAACCCTCTCAAACTCTC
1 AAAAAAACTAAAAAAACCCTCTCAAACTCTC
*
65495782 AAAAAAACTAAAAAACCCCTCTCAAACTC
1 AAAAAAACTAAAAAAACCCTCTCAAACTC
65495811 CCTCCCCCTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.55, C:0.30, G:0.00, T:0.15
Consensus pattern (31 bp):
AAAAAAACTAAAAAAACCCTCTCAAACTCTC
Found at i:65496078 original size:4 final size:4
Alignment explanation
Indices: 65496069--65496097 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
65496059 AAAAACAAGT
65496069 AATA AATA AATA AATA AATA AATA AATA A
1 AATA AATA AATA AATA AATA AATA AATA A
65496098 GATATCAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:65502653 original size:21 final size:21
Alignment explanation
Indices: 65502623--65502662 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
65502613 GTGTCCCCTA
*
65502623 TTTTGAGAAAATTTTTTAAAG
1 TTTTGAGAAAATTTCTTAAAG
* *
65502644 TTTTGTGAAAGTTTCTTAA
1 TTTTGAGAAAATTTCTTAA
65502663 GTTATCGATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.03, G:0.15, T:0.50
Consensus pattern (21 bp):
TTTTGAGAAAATTTCTTAAAG
Found at i:65512226 original size:20 final size:20
Alignment explanation
Indices: 65512198--65512246 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
65512188 TATCGATCCA
* * *
65512198 GTATTGATACGTTTCTTAAG
1 GTATCGATACATTTCCTAAG
*
65512218 GTATCGATATATTTCCTAAG
1 GTATCGATACATTTCCTAAG
65512238 GTATCGATA
1 GTATCGATA
65512247 TTTTTACTCC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.29, C:0.12, G:0.18, T:0.41
Consensus pattern (20 bp):
GTATCGATACATTTCCTAAG
Found at i:65512247 original size:20 final size:20
Alignment explanation
Indices: 65512209--65512247 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
65512199 TATTGATACG
*
65512209 TTTCTTAAGGTATCGATATA
1 TTTCCTAAGGTATCGATATA
65512229 TTTCCTAAGGTATCGATAT
1 TTTCCTAAGGTATCGATAT
65512248 TTTTACTCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.44
Consensus pattern (20 bp):
TTTCCTAAGGTATCGATATA
Found at i:65512599 original size:20 final size:20
Alignment explanation
Indices: 65512576--65512625 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
65512566 CTTGTAAAGA
*
65512576 TTGTTTCTTTCTTTGCTTAT
1 TTGTTTCTTTCTTTGCTTAC
*
65512596 TTGTTTCTTTCTTTGTTTAC
1 TTGTTTCTTTCTTTGCTTAC
65512616 TTGTTTCTTT
1 TTGTTTCTTT
65512626 TTGAGAGAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.04, C:0.14, G:0.10, T:0.72
Consensus pattern (20 bp):
TTGTTTCTTTCTTTGCTTAC
Found at i:65517537 original size:48 final size:47
Alignment explanation
Indices: 65517424--65517595 Score: 154
Period size: 48 Copynumber: 3.6 Consensus size: 47
65517414 GGTATAATGC
* * * * * *
65517424 CGACGCCATGTTCTAGACGTGGTCTTACATTGGCTCATCCATCAAGT
1 CGACGCCATGTCCTAGACATGGTCTTACAATGACTCATCAATCAAGG
* *
65517471 CGATGCCATGTCATAGACATGGTCTTACAATGACT-ATCAAAATCAAGG
1 CGACGCCATGTCCTAGACATGGTCTTACAATGACTCATC--AATCAAGG
* * *
65517519 CGACGCCATGTCCCAGACATGGTCTTACACT-AGCTCA-CATATC-CGTG
1 CGACGCCATGTCCTAGACATGGTCTTACAATGA-CTCATCA-ATCAAG-G
*
65517566 TCGATGCCATGTCCTAGACATGGTCTTACA
1 -CGACGCCATGTCCTAGACATGGTCTTACA
65517596 CTAGCTCTCA
Statistics
Matches: 103, Mismatches: 15, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
46 5 0.05
47 34 0.33
48 63 0.61
49 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (47 bp):
CGACGCCATGTCCTAGACATGGTCTTACAATGACTCATCAATCAAGG
Found at i:65517620 original size:48 final size:48
Alignment explanation
Indices: 65517523--65517646 Score: 159
Period size: 48 Copynumber: 2.6 Consensus size: 48
65517513 TCAAGGCGAC
*
65517523 GCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-ATCCGT-G-TCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT--GTAGCT-GAT
*
65517571 GCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAATGTAGCTGAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTAGCTGAT
*
65517619 G-CATGTCCCAAACAT-GTCTTACACTAGC
1 GCCATGTCCCAGACATGGTCTTACACTAGC
65517647 ACACAAATAA
Statistics
Matches: 69, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
46 13 0.19
47 14 0.20
48 39 0.57
49 3 0.04
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (48 bp):
GCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTAGCTGAT
Found at i:65519660 original size:51 final size:51
Alignment explanation
Indices: 65519591--65519853 Score: 265
Period size: 51 Copynumber: 5.3 Consensus size: 51
65519581 AGTGCTAGTG
* *
65519591 CACATATAGAACTTTACATAATTAGTATGCACATACTTTGCATAAACAATT
1 CACACATAGAACTTTACATAATTAGTACGCACATACTTTGCATAAACAATT
* * * * *
65519642 TACAGATAAAACTTTACATAATTAGTACGCACATACGTTGCATAAATAATT
1 CACACATAGAACTTTACATAATTAGTACGCACATACTTTGCATAAACAATT
* **
65519693 -ACACATAGAACTTCACATAACCAGTACAG-ACATACTTTG--T-----ATT
1 CACACATAGAACTTTACATAATTAGTAC-GCACATACTTTGCATAAACAATT
* * * * *
65519736 CACATATAGAACGTCACATAACTAGTACGCACATACTTTGCATAGACAATT
1 CACACATAGAACTTTACATAATTAGTACGCACATACTTTGCATAAACAATT
* * * * *
65519787 CAAACATAGAACTTTACATAATCAGTACGCACATACTTTGTATAGACAGTT
1 CACACATAGAACTTTACATAATTAGTACGCACATACTTTGCATAAACAATT
*
65519838 CACACAGAGAACTTTA
1 CACACATAGAACTTTA
65519854 TGTAATCAGT
Statistics
Matches: 177, Mismatches: 25, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
43 4 0.02
44 34 0.19
46 1 0.01
48 1 0.01
50 31 0.18
51 106 0.60
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (51 bp):
CACACATAGAACTTTACATAATTAGTACGCACATACTTTGCATAAACAATT
Found at i:65519821 original size:95 final size:94
Alignment explanation
Indices: 65519657--65519829 Score: 258
Period size: 95 Copynumber: 1.8 Consensus size: 94
65519647 ATAAAACTTT
* * *
65519657 ACATAATTAGTACGCACATACGTTGCATAAATAATTACACATAGAACTTCACATAACCAGTACAG
1 ACATAACTAGTACGCACATACGTTGCATAAACAATTAAACATAGAACTTCACATAACCAGTACAG
65519722 ACATACTTTGTATTCACATATAGAACGTC
66 ACATACTTTGTATTCACATATAGAACGTC
* * * *
65519751 ACATAACTAGTACGCACATACTTTGCATAGACAATTCAAACATAGAACTTTACATAATCAGTAC-
1 ACATAACTAGTACGCACATACGTTGCATAAACAATT-AAACATAGAACTTCACATAACCAGTACA
65519815 GCACATACTTTGTAT
65 G-ACATACTTTGTAT
65519830 AGACAGTTCA
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
94 33 0.47
95 37 0.53
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.28
Consensus pattern (94 bp):
ACATAACTAGTACGCACATACGTTGCATAAACAATTAAACATAGAACTTCACATAACCAGTACAG
ACATACTTTGTATTCACATATAGAACGTC
Found at i:65521233 original size:32 final size:32
Alignment explanation
Indices: 65521190--65521250 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
65521180 CAAATGGTAC
*
65521190 AACTTGAAAAGGTTATGTACACTTTGTGTGTA
1 AACTTGAAAAGGTTAGGTACACTTTGTGTGTA
* *
65521222 AACTTGGAAAGGTTAGGTATACTTTGTGT
1 AACTTGAAAAGGTTAGGTACACTTTGTGT
65521251 ATACCATATG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.30, C:0.08, G:0.25, T:0.38
Consensus pattern (32 bp):
AACTTGAAAAGGTTAGGTACACTTTGTGTGTA
Found at i:65521278 original size:33 final size:34
Alignment explanation
Indices: 65521236--65521299 Score: 103
Period size: 33 Copynumber: 1.9 Consensus size: 34
65521226 TGGAAAGGTT
65521236 AGGTATACTTTGTGTATACCATAT-GAAAGGGAA
1 AGGTATACTTTGTGTATACCATATGGAAAGGGAA
* *
65521269 AGGTATACTTTGTGTGTACCATTTGGAAAGG
1 AGGTATACTTTGTGTATACCATATGGAAAGG
65521300 AATGTACACC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
33 22 0.79
34 6 0.21
ACGTcount: A:0.31, C:0.09, G:0.27, T:0.33
Consensus pattern (34 bp):
AGGTATACTTTGTGTATACCATATGGAAAGGGAA
Found at i:65526462 original size:20 final size:19
Alignment explanation
Indices: 65526437--65526486 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
65526427 AGAATGAAAT
*
65526437 AAATAACATAAAACAATTTA
1 AAATAA-ATAAAACAACTTA
*
65526457 AAATAAAATAAAGCAACTTA
1 AAAT-AAATAAAACAACTTA
65526477 AAATAAATAA
1 AAATAAATAA
65526487 TATATATAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 6 0.22
20 19 0.70
21 2 0.07
ACGTcount: A:0.68, C:0.08, G:0.02, T:0.22
Consensus pattern (19 bp):
AAATAAATAAAACAACTTA
Found at i:65526498 original size:46 final size:45
Alignment explanation
Indices: 65526433--65526536 Score: 138
Period size: 46 Copynumber: 2.3 Consensus size: 45
65526423 CAAAAGAATG
* *
65526433 AAATAAATAACATAAAACAATTTAAAATAAAATAAAGCAACT-TA
1 AAATAAATAATATAAAACAATTTAAAATAAAATAAAGAAACTCTA
* * *
65526477 AAATAAATAATATATATAACAATTTAAAATAACATATAGAAAGTCTA
1 AAATAAATAATATA-A-AACAATTTAAAATAAAATAAAGAAACTCTA
65526524 AAATAAATAATAT
1 AAATAAATAATAT
65526537 GTAAAAAGAA
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
44 13 0.25
45 1 0.02
46 23 0.44
47 15 0.29
ACGTcount: A:0.63, C:0.07, G:0.03, T:0.27
Consensus pattern (45 bp):
AAATAAATAATATAAAACAATTTAAAATAAAATAAAGAAACTCTA
Found at i:65526565 original size:24 final size:24
Alignment explanation
Indices: 65526522--65526587 Score: 69
Period size: 24 Copynumber: 2.6 Consensus size: 24
65526512 ATAGAAAGTC
*
65526522 TAAAATAAATAATATGTAAAAAGAAATT
1 TAAAATAAATAATA---AAAAA-TAATT
*
65526550 TAAAATAAATAATAAAAAATAGTT
1 TAAAATAAATAATAAAAAATAATT
*
65526574 TAATATAAATAATA
1 TAAAATAAATAATA
65526588 TATATAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
24 16 0.46
25 5 0.14
28 14 0.40
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (24 bp):
TAAAATAAATAATAAAAAATAATT
Found at i:65526717 original size:24 final size:27
Alignment explanation
Indices: 65526684--65526739 Score: 82
Period size: 25 Copynumber: 2.2 Consensus size: 27
65526674 CAATATGTAT
*
65526684 TAAAACAA-TTTAAAATGAAT-AC-TA
1 TAAAAAAATTTTAAAATGAATAACATA
65526708 TAAAAAAATTTTAAAATGAATAACATA
1 TAAAAAAATTTTAAAATGAATAACATA
65526735 TAAAA
1 TAAAA
65526740 TAGTTTATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 7 0.25
25 12 0.43
26 2 0.07
27 7 0.25
ACGTcount: A:0.62, C:0.05, G:0.04, T:0.29
Consensus pattern (27 bp):
TAAAAAAATTTTAAAATGAATAACATA
Found at i:65528558 original size:132 final size:131
Alignment explanation
Indices: 65528396--65528679 Score: 372
Period size: 132 Copynumber: 2.2 Consensus size: 131
65528386 ATATGTTCCT
* **
65528396 CTGTAACTTTAGGGAGATAAGACTAATGGCTTCAATATGCTCCATTGCAACTTCAGGGAGACGCG
1 CTGTAACTTTAGGGAGATAAGACTAATGGCTTCAATATGCTCCACTGCAACTTCAGGGAGACAAG
* * *
65528461 ATTTGTAACATCAACCTGCTCCACTGCAACTTT-AGGAAGATAAGGTTTATGGTTTTAATCTACT
66 ATTGGCAACATCAACCTGCTCCACTGCAACTTTAAGG-AGATAAGGTTTATGGTTGTAA-CTACT
*
65528525 CTA
129 CCA
* * * * * *
65528528 CTGTAACTTTAAGGAGATAAGATTAGTGGCTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAG
1 CTGTAACTTTAGGGAGATAAGACTAATGGCTTCAATATGCTCCACTGCAACTTCAGGGAGACAAG
* * * *
65528593 ATTGGCCACTTGAACCTGCTCCACTGCAACTTTAAGGAGATAAGGTTTGTGGTTGTAACTACTCC
66 ATTGGCAACATCAACCTGCTCCACTGCAACTTTAAGGAGATAAGGTTTATGGTTGTAACTACTCC
65528658 A
131 A
* *
65528659 CTGCAACTTCAGGGAGATAAG
1 CTGTAACTTTAGGGAGATAAG
65528680 GTTTAACATG
Statistics
Matches: 131, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
131 25 0.19
132 103 0.79
133 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (131 bp):
CTGTAACTTTAGGGAGATAAGACTAATGGCTTCAATATGCTCCACTGCAACTTCAGGGAGACAAG
ATTGGCAACATCAACCTGCTCCACTGCAACTTTAAGGAGATAAGGTTTATGGTTGTAACTACTCC
A
Found at i:65528565 original size:44 final size:44
Alignment explanation
Indices: 65528479--65528679 Score: 169
Period size: 44 Copynumber: 4.6 Consensus size: 44
65528469 CATCAACCTG
* *
65528479 CTCCACTGCAACTTT-AGGAAGATAAGGTTTA-TGGTTTTAATCTA
1 CTCCACTGCAACTTTAAGG-AGATAA-GATTAGTGGCTTTAATCTA
* * * *
65528523 CTCTACTGTAACTTTAAGGAGATAAGATTAGTGGCTTCAATCTG
1 CTCCACTGCAACTTTAAGGAGATAAGATTAGTGGCTTTAATCTA
* * *** * * *
65528567 CTCCACTGCAA-TTTCAGGGAGATAAGATTGGCCACTTGAACCTG
1 CTCCACTGCAACTTT-AAGGAGATAAGATTAGTGGCTTTAATCTA
* *
65528611 CTCCACTGCAACTTTAAGGAGATAAGGTTTGTGG-TTGTAA-CTA
1 CTCCACTGCAACTTTAAGGAGATAAGATTAGTGGCTT-TAATCTA
* *
65528654 CTCCACTGCAACTTCAGGGAGATAAG
1 CTCCACTGCAACTTTAAGGAGATAAG
65528680 GTTTAACATG
Statistics
Matches: 127, Mismatches: 25, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
43 35 0.28
44 86 0.68
45 6 0.05
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.30
Consensus pattern (44 bp):
CTCCACTGCAACTTTAAGGAGATAAGATTAGTGGCTTTAATCTA
Found at i:65528976 original size:44 final size:44
Alignment explanation
Indices: 65528919--65529275 Score: 231
Period size: 44 Copynumber: 8.1 Consensus size: 44
65528909 AGAGGTATAG
* * * *
65528919 GATTTGTTACTTTAATCTACTCTACTGCAACTTCAGGGAGATAA
1 GATTTGTAACTTCAATCTACTCCACTACAACTTCAGGGAGATAA
* * * * * * *
65528963 GACTTGTAACTTTAA-CTTGCCCCCACTGCAACTTTAGGGGGATAA
1 GATTTGTAACTTCAATC-T-ACTCCACTACAACTTCAGGGAGATAA
* * ** * * *
65529008 GGTTTGCTATCTTTGATCTACTCCACTGCAACTCCAGAGAGATCAA
1 GATTTG-TAACTTCAATCTACTCCACTACAACTTCAGGGAGAT-AA
* *
65529054 -ATCTGTAACTTCAATCTACTCCACTGCAAC-TCTAGGGAGATAA
1 GATTTGTAACTTCAATCTACTCCACTACAACTTC-AGGGAGATAA
* * ** * * *
65529097 GACTCGTGGCTTCAA-CTTGCCCCACTACAACTTTAGGG-GATAA
1 GATTTGTAACTTCAATC-TACTCCACTACAACTTCAGGGAGATAA
* * * * *
65529140 GGTTTGCTATCTTCGATC-ACTCTACTACAACTCCAGGGAGATAA
1 GATTTG-TAACTTCAATCTACTCCACTACAACTTCAGGGAGATAA
* * ** *
65529184 GATTTGTAACTCCAATCTATTCCACTACAACTTTTGCGAGATAA
1 GATTTGTAACTTCAATCTACTCCACTACAACTTCAGGGAGATAA
* ** * *
65529228 GATTAGTGGCTTCAATCTACTTCACTACAACTTCAAGGAGATAA
1 GATTTGTAACTTCAATCTACTCCACTACAACTTCAGGGAGATAA
65529272 GATT
1 GATT
65529276 CGCCATGGTG
Statistics
Matches: 236, Mismatches: 64, Indels: 26
0.72 0.20 0.08
Matches are distributed among these distances:
43 36 0.15
44 141 0.60
45 48 0.20
46 10 0.04
47 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.31
Consensus pattern (44 bp):
GATTTGTAACTTCAATCTACTCCACTACAACTTCAGGGAGATAA
Found at i:65529208 original size:131 final size:133
Alignment explanation
Indices: 65528932--65529242 Score: 396
Period size: 131 Copynumber: 2.3 Consensus size: 133
65528922 TTGTTACTTT
* * ** * *
65528932 AATCTACTCTACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAACTTGCCCCCACTGCAACTT
1 AATCTACTCCACTGCAACTT-AGGGAGATAAGACTAGTGGCTTCAACTTGCCCCCACTACAACTT
* *
65528997 TAGGGGGATAAGGTTTGCTATCTTTGATCTACTCCACTGCAACTCCAGAGAGATCAAATCTGTAA
65 TAGGGGGATAAGGTTTGCTATCTTCGATCTACTCCACTACAACTCCAGAGAGATCAAATCTGTAA
*
65529062 CTTC
130 CTCC
*
65529066 AATCTACTCCACTGCAACTCTAGGGAGATAAGACTCGTGGCTTCAACTTG-CCCCACTACAACTT
1 AATCTACTCCACTGCAACT-TAGGGAGATAAGACTAGTGGCTTCAACTTGCCCCCACTACAACTT
* * *
65529130 TA-GGGGATAAGGTTTGCTATCTTCGATC-ACTCTACTACAACTCCAGGGAGAT-AAGATTTGTA
65 TAGGGGGATAAGGTTTGCTATCTTCGATCTACTCCACTACAACTCCAGAGAGATCAA-ATCTGTA
65529192 ACTCC
129 ACTCC
* * * * *
65529197 AATCTATTCCACTACAACTTTTGCGAGATAAGATTAGTGGCTTCAA
1 AATCTACTCCACTGCAAC-TTAGGGAGATAAGACTAGTGGCTTCAA
65529243 TCTACTTCAC
Statistics
Matches: 156, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
130 2 0.01
131 69 0.44
132 26 0.17
133 15 0.10
134 43 0.28
135 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (133 bp):
AATCTACTCCACTGCAACTTAGGGAGATAAGACTAGTGGCTTCAACTTGCCCCCACTACAACTTT
AGGGGGATAAGGTTTGCTATCTTCGATCTACTCCACTACAACTCCAGAGAGATCAAATCTGTAAC
TCC
Found at i:65531141 original size:27 final size:27
Alignment explanation
Indices: 65531110--65531162 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
65531100 ACACTTATGG
65531110 CATTTCTTGGCATAACTGATGCAATCA
1 CATTTCTTGGCATAACTGATGCAATCA
65531137 CATTTCTTGGCATAACTGATGCAATC
1 CATTTCTTGGCATAACTGATGCAATC
65531163 CTTCTCCATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (27 bp):
CATTTCTTGGCATAACTGATGCAATCA
Found at i:65537410 original size:19 final size:19
Alignment explanation
Indices: 65537394--65537438 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
65537384 TTATGAAACT
65537394 TAATGCATATGATGAAATG
1 TAATGCATATGATGAAATG
*
65537413 TAATGCATATGAATAAAATG
1 TAATGCATATG-ATGAAATG
65537433 -AATGCA
1 TAATGCA
65537439 AAAAGAGGCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.47, C:0.07, G:0.18, T:0.29
Consensus pattern (19 bp):
TAATGCATATGATGAAATG
Found at i:65537960 original size:28 final size:26
Alignment explanation
Indices: 65537910--65537963 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
65537900 CTAACTCTGC
**
65537910 CACTTTAGCTCTTAACCTCTCCTTTT
1 CACTTTAGCTCTTAACAACTCCTTTT
65537936 CACTTTAGCTCTCTAACAAACTCCTTTT
1 CACTTTAGCTCT-TAAC-AACTCCTTTT
65537964 TATAGCATCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 12 0.50
27 4 0.17
28 8 0.33
ACGTcount: A:0.20, C:0.33, G:0.04, T:0.43
Consensus pattern (26 bp):
CACTTTAGCTCTTAACAACTCCTTTT
Found at i:65542139 original size:27 final size:27
Alignment explanation
Indices: 65542100--65542277 Score: 189
Period size: 27 Copynumber: 6.6 Consensus size: 27
65542090 ATTTTGAGCC
* * *
65542100 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * *
65542127 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
65542154 CGCACACTTAGTGCTACATAGTCAACCT
1 CGCACACTTAGTGCTACATAGTCAA-CT
** * *
65542182 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
65542209 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
*
65542236 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAGTC-AACT
65542263 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
65542278 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 104 0.81
28 25 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:65542239 original size:82 final size:81
Alignment explanation
Indices: 65542121--65542276 Score: 217
Period size: 82 Copynumber: 1.9 Consensus size: 81
65542111 TGCTATATAA
* *
65542121 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTC-AACCTCGC
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCGAA--TCGC
65542185 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * **
65542203 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
65542267 CACTTAGTGC
65 CACTTAGTGC
65542277 TGTACAATTT
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
81 16 0.24
82 48 0.73
83 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:65551517 original size:13 final size:13
Alignment explanation
Indices: 65551499--65551523 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
65551489 CCAAGCACAC
65551499 GCCCATGTCCCTG
1 GCCCATGTCCCTG
65551512 GCCCATGTCCCT
1 GCCCATGTCCCT
65551524 CACATGACCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.48, G:0.20, T:0.24
Consensus pattern (13 bp):
GCCCATGTCCCTG
Found at i:65559196 original size:20 final size:20
Alignment explanation
Indices: 65559171--65559218 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
65559161 AAAAGCACAT
65559171 GCCCGTGTGCTTAGGGACAC
1 GCCCGTGTGCTTAGGGACAC
65559191 GCCCGTGTGCTTAGGGACAC
1 GCCCGTGTGCTTAGGGACAC
65559211 GCCCGTGT
1 GCCCGTGT
65559219 CCTTCACCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.12, C:0.31, G:0.35, T:0.21
Consensus pattern (20 bp):
GCCCGTGTGCTTAGGGACAC
Found at i:65563273 original size:48 final size:48
Alignment explanation
Indices: 65563085--65563311 Score: 251
Period size: 48 Copynumber: 4.7 Consensus size: 48
65563075 CCGTGCTAAA
* * ** **
65563085 TGTGCCTGTGTAAGACCATGTCTGGGATATGGCATCGGTGATGATAAA
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATG
* * *
65563133 TGTTCCGGTGTAAGACCATGTGTGGGACATGGCATCGACGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATG
* * *
65563181 TGTGCCAGTGTAAGACCATGTTTGGGACATGGAATCGGCGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATG
* * * *
65563229 TGTGCCAGTGTTAGATCATGTCTGGGACATGGCGTCGACAATGATATG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATG
* * *
65563277 TG-GATTCA-TGTAAGACTATGTCGGGGACATGGCAT
1 TGTG--CCAGTGTAAGACCATGTCTGGGACATGGCAT
65563312 TGGTACTTTA
Statistics
Matches: 151, Mismatches: 26, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
47 1 0.01
48 148 0.98
49 2 0.01
ACGTcount: A:0.24, C:0.15, G:0.32, T:0.28
Consensus pattern (48 bp):
TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATG
Found at i:65569243 original size:57 final size:57
Alignment explanation
Indices: 65569151--65569271 Score: 158
Period size: 57 Copynumber: 2.1 Consensus size: 57
65569141 GAAAAGAAAT
* *
65569151 TGAG-TTTCAAGTTGGTGATAAGGTATTTTTGAAAGTATCCCGATGGA-AAAAGGTTC
1 TGAGATTTCAAATTGGTGATAAGGTATTTTTGAAAGTATCCCCATGGAGAAAA-GTTC
* *
65569207 TGAGATTTCAAATTGGTGAT-CGAGTGTTTTTGAAAGTATCCCCATGGAGAAAAGTTC
1 TGAGATTTCAAATTGGTGATAAG-GTATTTTTGAAAGTATCCCCATGGAGAAAAGTTC
*
65569264 TTAGATTT
1 TGAGATTT
65569272 GGTAGGAAGG
Statistics
Matches: 57, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
56 5 0.09
57 48 0.84
58 4 0.07
ACGTcount: A:0.30, C:0.10, G:0.25, T:0.36
Consensus pattern (57 bp):
TGAGATTTCAAATTGGTGATAAGGTATTTTTGAAAGTATCCCCATGGAGAAAAGTTC
Found at i:65570960 original size:48 final size:48
Alignment explanation
Indices: 65570886--65571161 Score: 315
Period size: 48 Copynumber: 5.8 Consensus size: 48
65570876 ACCGTGGTAA
**
65570886 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATTAGAGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGAGATGATAT
* * *
65570934 ATATGCCTGTGTAAGACCATGTCTGGGACATGGTATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGAGATGATAT
* * * *
65570982 ATGTGCCTGTGTAAGACCATGTTTGGGACATGGCATC-AACGATAAAAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGA-GATGATAT
* *
65571030 GTGTGCCTGCGTAAGACCATGTCTGGGACATGGCATCGGCA-ATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGG-AGATGATAT
* * * * *
65571078 GTGTGCCAGTGTAAGAGCATGTCTGGGACATGGTATCGGTGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGAGATGATAT
** * * *
65571126 ATG-GATTCATGTAAGACCATGACGGGGACATGGCAT
1 ATGTGCCT-GTGTAAGACCATGTCTGGGACATGGCAT
65571162 TGGTACTTTA
Statistics
Matches: 191, Mismatches: 32, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
47 1 0.01
48 189 0.99
50 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.27
Consensus pattern (48 bp):
ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGAGATGATAT
Found at i:65571154 original size:144 final size:144
Alignment explanation
Indices: 65570887--65571161 Score: 392
Period size: 144 Copynumber: 1.9 Consensus size: 144
65570877 CCGTGGTAAA
* * *
65570887 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATTAGAGATGATATATATGCCTGTGTAAGACC
1 TGTGCCTGCGTAAGACCATGTCTGGGACATGGCATCAGAGATGATATATATGCCAGTGTAAGACC
* * ***
65570952 ATGTCTGGGACATGGTATCGGCGATGATATATGTGCCTGTGTAAGACCATGTTTGGGACATGGCA
66 ATGTCTGGGACATGGTATCGGCGATGATATATGTGACTATGTAAGACCATGACGGGGACATGGCA
65571017 TCAACGATAAAATG
131 TCAACGATAAAATG
* * * *
65571031 TGTGCCTGCGTAAGACCATGTCTGGGACATGGCATCGGCA-ATGATATGTGTGCCAGTGTAAGAG
1 TGTGCCTGCGTAAGACCATGTCTGGGACATGGCATCAG-AGATGATATATATGCCAGTGTAAGAC
* *
65571095 CATGTCTGGGACATGGTATCGGTGATGATATATG-GATTCATGTAAGACCATGACGGGGACATGG
65 CATGTCTGGGACATGGTATCGGCGATGATATATGTGACT-ATGTAAGACCATGACGGGGACATGG
65571159 CAT
129 CAT
65571162 TGGTACTTTA
Statistics
Matches: 115, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
143 2 0.02
144 112 0.97
145 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.27
Consensus pattern (144 bp):
TGTGCCTGCGTAAGACCATGTCTGGGACATGGCATCAGAGATGATATATATGCCAGTGTAAGACC
ATGTCTGGGACATGGTATCGGCGATGATATATGTGACTATGTAAGACCATGACGGGGACATGGCA
TCAACGATAAAATG
Found at i:65581192 original size:58 final size:58
Alignment explanation
Indices: 65581116--65581233 Score: 236
Period size: 58 Copynumber: 2.0 Consensus size: 58
65581106 ACAATACTCA
65581116 TTCTTCATGTTCTCACCTTGTCGTTTCTTTGAGTTACTCTTTGGATTACTCGGGAACC
1 TTCTTCATGTTCTCACCTTGTCGTTTCTTTGAGTTACTCTTTGGATTACTCGGGAACC
65581174 TTCTTCATGTTCTCACCTTGTCGTTTCTTTGAGTTACTCTTTGGATTACTCGGGAACC
1 TTCTTCATGTTCTCACCTTGTCGTTTCTTTGAGTTACTCTTTGGATTACTCGGGAACC
65581232 TT
1 TT
65581234 TTCCTTTTTG
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 60 1.00
ACGTcount: A:0.14, C:0.24, G:0.17, T:0.46
Consensus pattern (58 bp):
TTCTTCATGTTCTCACCTTGTCGTTTCTTTGAGTTACTCTTTGGATTACTCGGGAACC
Found at i:65581415 original size:107 final size:108
Alignment explanation
Indices: 65581254--65581650 Score: 492
Period size: 107 Copynumber: 3.7 Consensus size: 108
65581244 AACTTGCCAT
65581254 TGCCATGTCTTGACATGGC-CTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTT
1 TGCCATGTCTTGACAT-GCTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTT
* *
65581318 GGCATGGTATTACATGGGACCTTTTCCTTATAGTAACTCATCAA
65 GGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
*
65581362 TG-CATGTCTTGACATGCTCTTTCATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
1 TGCCATGTCTTGACATGCTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
65581426 GCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
66 GCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
* * * * *
65581469 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTT
1 TGCCATGTCTTGACATGCTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAATGCCATGCCTT
* * * *
65581534 CGCATGGTCTTACAT--GA--TAT-CCTTAT-CTTAC-CA--AA
65 GGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
*** * * ** * *
65581569 TGCCATGTTCCAAACATGGTCTTACATGGTATCCATATCTTATAGAACTTATCAATGCCATGCCT
1 TGCCATG-TCTTGACATGCTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAATGCCATGCCT
65581634 TGGCATGGTCTTACATG
64 TGGCATGGTCTTACATG
65581651 ATATCATTAT
Statistics
Matches: 262, Mismatches: 22, Indels: 16
0.87 0.07 0.05
Matches are distributed among these distances:
100 9 0.03
101 64 0.24
102 2 0.01
103 3 0.01
104 6 0.02
105 2 0.01
106 2 0.01
107 103 0.39
108 37 0.14
109 34 0.13
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (108 bp):
TGCCATGTCTTGACATGCTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
GCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
Found at i:65581488 original size:55 final size:53
Alignment explanation
Indices: 65581254--65581650 Score: 359
Period size: 54 Copynumber: 7.5 Consensus size: 53
65581244 AACTTGCCAT
* * *
65581254 TGCCATGTCTTGACATGGCCTTACATGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
* * * *
65581307 TGCCATGCCTTGGCATGGTATTACATGGGACCTTTTCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAA
* * * *
65581362 TG-CATGTCTTGACATGCTCTTTCATGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
* *
65581414 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAA
* * * *
65581469 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAACTCATCAA
* ***
65581523 TGCCATGCCTTCG-CATGGTCTTACATGATA---T-CCTTATCTTAC-CA--AA
1 TGCCATGCCTT-GACATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAA
** * ** *
65581569 TGCCATGTTCC-AAACATGGTCTTACATGGTATCCATATCTTATAGAACTTATCAA
1 TGCCATG--CCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
*
65581624 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
65581651 ATATCATTAT
Statistics
Matches: 277, Mismatches: 45, Indels: 43
0.76 0.12 0.12
Matches are distributed among these distances:
46 9 0.03
47 16 0.06
48 3 0.01
49 8 0.03
50 1 0.00
51 1 0.00
52 22 0.08
53 69 0.25
54 78 0.28
55 68 0.25
56 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAA
Found at i:65581591 original size:47 final size:47
Alignment explanation
Indices: 65581536--65581711 Score: 176
Period size: 47 Copynumber: 3.6 Consensus size: 47
65581526 CATGCCTTCG
65581536 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
* * * ***
65581583 CATGGTCTTACATGGTATCCATATCTTATAGAACTTATCAATGCCATG--CCTTGG
1 CATGGTCTTACATGATATCCTTATC-T-T---AC-CA--AATGCCATGTTCC-AAA
*
65581637 CATGGTCTTACATGATATCATTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
* *
65581684 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGATATCCTTATCTTA
65581712 ATGTCAATGC
Statistics
Matches: 102, Mismatches: 16, Indels: 22
0.73 0.11 0.16
Matches are distributed among these distances:
46 9 0.09
47 48 0.47
48 4 0.04
49 3 0.03
52 3 0.03
53 4 0.04
54 22 0.22
55 9 0.09
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:65581596 original size:101 final size:101
Alignment explanation
Indices: 65581266--65581711 Score: 443
Period size: 101 Copynumber: 4.3 Consensus size: 101
65581256 CCATGTCTTG
* * * *
65581266 ACATGGCCTTACATGGTATCCTTGCCTTAT-GAACTCACCAATGCCATGCCTTGGCATGGTATTA
1 ACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
* * * ***
65581330 CATGGGACCTTTTCCTTATAGTAACTCATCAATG-CATG-TCTTG
66 CAT--GA---TATCCTTAT-CTTAC-CA--AATGCCATGTTCCAA
* * * *
65581373 ACATGCTCTTTCATGGTATCCTTGCCTTAT-GAACTCACCAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
* * * ***
65581437 CATGGGACCTTTGCCTTATAGTAACTCATCAATGCCATG-TCTTG
66 CAT--GA--TAT-CCTTAT-CTTAC-CA--AATGCCATGTTCCAA
* * *
65581481 ACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTCGCATGGTCTTA
1 ACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
65581546 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
66 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
* **
65581582 ACATGGTCTTACATGGTATCCATATCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
*
65581647 CATGATATCATTATCTTACCAAATGCCATGTTCCAA
66 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
*
65581683 ACATGGTCTTACATGGTATCCTTGTCTTA
1 ACATGGTCTTACATGGTATCCTTGCCTTA
65581712 ATGTCAATGC
Statistics
Matches: 308, Mismatches: 27, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
100 9 0.03
101 123 0.40
102 2 0.01
103 3 0.01
104 6 0.02
105 2 0.01
106 4 0.01
107 90 0.29
108 35 0.11
109 34 0.11
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (101 bp):
ACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
Found at i:65581899 original size:44 final size:44
Alignment explanation
Indices: 65581850--65581933 Score: 118
Period size: 44 Copynumber: 1.9 Consensus size: 44
65581840 TCCTTAACCT
*
65581850 TCAATTCCTCCTTAAATTG-CATGTTATCAA-CATGGACTTTTCCG
1 TCAATTCCTCCTT-AATTGCCATGGTA-CAACCATGGACTTTTCCG
*
65581894 TCAATTCTTCCTTAATTGCCATGGTACAACCATGGACTTT
1 TCAATTCCTCCTTAATTGCCATGGTACAACCATGGACTTT
65581934 GAGATATCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
43 8 0.22
44 28 0.78
ACGTcount: A:0.25, C:0.25, G:0.12, T:0.38
Consensus pattern (44 bp):
TCAATTCCTCCTTAATTGCCATGGTACAACCATGGACTTTTCCG
Found at i:65587379 original size:18 final size:18
Alignment explanation
Indices: 65587328--65587380 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 18
65587318 GACTAAGGAC
65587328 TAAATTAGAAATCAATATTAT
1 TAAA-TAGAAAT-AA-ATTAT
*
65587349 T-AATAGATGATAAATTAT
1 TAAATAGA-AATAAATTAT
65587367 TAAATAGAAATAAA
1 TAAATAGAAATAAA
65587381 AATCATTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
18 11 0.39
19 12 0.43
20 4 0.14
21 1 0.04
ACGTcount: A:0.57, C:0.02, G:0.08, T:0.34
Consensus pattern (18 bp):
TAAATAGAAATAAATTAT
Found at i:65593179 original size:53 final size:53
Alignment explanation
Indices: 65593099--65593199 Score: 166
Period size: 53 Copynumber: 1.9 Consensus size: 53
65593089 GAAGCCTCCG
* * *
65593099 AGAAATATTACTGAGGTTTAGAGCTTTTTGGGACTTGTCGGTTACTACCGACA
1 AGAAATATTACCGAGGTTCAGAGCTTTTTGGGACTTGCCGGTTACTACCGACA
*
65593152 AGAAATATTACCGAGGTTCGGAGCTTTTTGGGACTTGCCGGTTACTAC
1 AGAAATATTACCGAGGTTCAGAGCTTTTTGGGACTTGCCGGTTACTAC
65593200 AGACGGTTTG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 44 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.33
Consensus pattern (53 bp):
AGAAATATTACCGAGGTTCAGAGCTTTTTGGGACTTGCCGGTTACTACCGACA
Found at i:65607646 original size:85 final size:85
Alignment explanation
Indices: 65607503--65608021 Score: 1029
Period size: 85 Copynumber: 6.1 Consensus size: 85
65607493 GGCCGGCCAT
65607503 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
65607568 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
65607588 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
65607653 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
65607673 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
65607738 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
65607758 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
65607823 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
65607843 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
65607908 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
65607928 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
*
65607993 GTATGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
65608013 GAGCATGGG
1 GAGCATGGG
65608022 CAATAAAATA
Statistics
Matches: 433, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 433 1.00
ACGTcount: A:0.38, C:0.08, G:0.26, T:0.27
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:65609326 original size:79 final size:81
Alignment explanation
Indices: 65609191--65609372 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 81
65609181 CGAATGATGC
* * *
65609191 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAAGCATTT
*
65609255 GTGCGAGTTACTA-ATT
66 GTGCGAGTTACTATA-A
* * * **
65609271 CCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAAGCATT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAAGCATT
65609333 TGTGCGAGTTACTATAA
65 TGTGCGAGTTACTATAA
*
65609350 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
65609373 TGAACGAGTA
Statistics
Matches: 88, Mismatches: 10, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
78 1 0.01
79 58 0.66
80 29 0.33
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAAGCATTT
GTGCGAGTTACTATAA
Found at i:65609388 original size:40 final size:40
Alignment explanation
Indices: 65609191--65609374 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
65609181 CGAATGATGC
* * * *
65609191 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
65609231 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
65609271 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
65609309 TCCGGGTTAAGTCCCGAAAGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
65609350 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
65609375 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:65609396 original size:79 final size:79
Alignment explanation
Indices: 65609243--65609397 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
65609233 GGACTAAGAT
* * **
65609243 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAAGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
65609308 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
65609322 CCGAAAGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAAGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
65609385 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
65609398 ATTTCGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.61
80 24 0.36
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAAGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:65615995 original size:85 final size:85
Alignment explanation
Indices: 65615852--65616710 Score: 1718
Period size: 85 Copynumber: 10.1 Consensus size: 85
65615842 GGCCGGCCAT
65615852 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
65615917 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
65615937 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
65616002 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
65616022 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
65616087 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
65616107 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
65616172 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
65616192 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
65616257 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
65616277 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
65616342 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
65616362 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
65616427 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
65616447 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
65616512 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
65616532 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
65616597 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
65616617 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
65616682 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
65616702 GAGCATGGG
1 GAGCATGGG
65616711 CAATAAAATA
Statistics
Matches: 774, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 774 1.00
ACGTcount: A:0.39, C:0.08, G:0.26, T:0.27
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:65617963 original size:40 final size:40
Alignment explanation
Indices: 65617879--65618063 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
65617869 TCGAATGATG
* * * *
65617879 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
65617918 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
*
65617959 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAAT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACT-AAT
*
65617999 T-CGGGTTAAGACCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
65618037 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGACCCGAAGGCATTTG
65618064 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 82 0.66
41 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:65618094 original size:79 final size:79
Alignment explanation
Indices: 65617926--65618096 Score: 206
Period size: 79 Copynumber: 2.2 Consensus size: 79
65617916 ATATCCGGAC
* **
65617926 TAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGT
1 TAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGT
*
65617991 TACTAAATTCGGGT
66 TACTAAATTCCGGT
* * *
65618005 TAAGACCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGA
1 TAAGATCCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGA
*
65618069 G-TAGCTATA-TCCGGT
64 GTTA-CTAAATTCCGGT
65618084 TAA-ATTCCGAAGG
1 TAAGA-TCCGAAGG
65618097 TACGTGATTC
Statistics
Matches: 79, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
78 3 0.04
79 55 0.70
80 21 0.27
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
TAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGT
TACTAAATTCCGGT
Found at i:65623384 original size:27 final size:27
Alignment explanation
Indices: 65623354--65623531 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
65623344 ATATTGAGTC
* * * *
65623354 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
65623381 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
65623408 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
65623436 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
65623463 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
65623490 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
65623517 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
65623532 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:65623493 original size:82 final size:81
Alignment explanation
Indices: 65623375--65623530 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
65623365 TGCTATATAA
* *
65623375 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
65623440 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
65623457 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
65623521 CACTTAGTGC
65 CACTTAGTGC
65623531 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:65625897 original size:60 final size:60
Alignment explanation
Indices: 65625825--65625946 Score: 217
Period size: 60 Copynumber: 2.0 Consensus size: 60
65625815 ATCAACTCCG
65625825 AAAATTTTACTTTCACCAAGCTCGGTCCAAAACAATGGCGTACGGCATTTACGACCGTAC
1 AAAATTTTACTTTCACCAAGCTCGGTCCAAAACAATGGCGTACGGCATTTACGACCGTAC
* * *
65625885 AAAATTTTACTTTCACCGAGCTCGGTCCAAAACAATGGTGTACGGCATTTACGCCCGTAC
1 AAAATTTTACTTTCACCAAGCTCGGTCCAAAACAATGGCGTACGGCATTTACGACCGTAC
65625945 AA
1 AA
65625947 GGCCTCGTAA
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (60 bp):
AAAATTTTACTTTCACCAAGCTCGGTCCAAAACAATGGCGTACGGCATTTACGACCGTAC
Found at i:65627110 original size:283 final size:283
Alignment explanation
Indices: 65626603--65627168 Score: 1132
Period size: 283 Copynumber: 2.0 Consensus size: 283
65626593 GCTTCGTTCA
65626603 GAATCATCGGAATGAGTTCCGAATTCCTTGGAACACACAAACGACTTCTAAACCTCAAACAACCA
1 GAATCATCGGAATGAGTTCCGAATTCCTTGGAACACACAAACGACTTCTAAACCTCAAACAACCA
65626668 TCATCATCAATCTGAAACTCCGATTCCTTGTTCGGAACACACTCAGCTCGTTTTGCAACCAATTC
66 TCATCATCAATCTGAAACTCCGATTCCTTGTTCGGAACACACTCAGCTCGTTTTGCAACCAATTC
65626733 CTCATCGACTTTCTGAGCTTCACGAATTTGATGAGTCAATAATGGTTTGGCTTTTAATTCAGCTA
131 CTCATCGACTTTCTGAGCTTCACGAATTTGATGAGTCAATAATGGTTTGGCTTTTAATTCAGCTA
65626798 CTAACACATTGTCAGGTAGAACAGACAAGTGCACATTCATCGCTCGCAAAGCAAACAGTGATTTT
196 CTAACACATTGTCAGGTAGAACAGACAAGTGCACATTCATCGCTCGCAAAGCAAACAGTGATTTT
65626863 CGGCTTAAGGCGTCCACAACCAC
261 CGGCTTAAGGCGTCCACAACCAC
65626886 GAATCATCGGAATGAGTTCCGAATTCCTTGGAACACACAAACGACTTCTAAACCTCAAACAACCA
1 GAATCATCGGAATGAGTTCCGAATTCCTTGGAACACACAAACGACTTCTAAACCTCAAACAACCA
65626951 TCATCATCAATCTGAAACTCCGATTCCTTGTTCGGAACACACTCAGCTCGTTTTGCAACCAATTC
66 TCATCATCAATCTGAAACTCCGATTCCTTGTTCGGAACACACTCAGCTCGTTTTGCAACCAATTC
65627016 CTCATCGACTTTCTGAGCTTCACGAATTTGATGAGTCAATAATGGTTTGGCTTTTAATTCAGCTA
131 CTCATCGACTTTCTGAGCTTCACGAATTTGATGAGTCAATAATGGTTTGGCTTTTAATTCAGCTA
65627081 CTAACACATTGTCAGGTAGAACAGACAAGTGCACATTCATCGCTCGCAAAGCAAACAGTGATTTT
196 CTAACACATTGTCAGGTAGAACAGACAAGTGCACATTCATCGCTCGCAAAGCAAACAGTGATTTT
65627146 CGGCTTAAGGCGTCCACAACCAC
261 CGGCTTAAGGCGTCCACAACCAC
65627169 ATTAGCCTTT
Statistics
Matches: 283, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
283 283 1.00
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (283 bp):
GAATCATCGGAATGAGTTCCGAATTCCTTGGAACACACAAACGACTTCTAAACCTCAAACAACCA
TCATCATCAATCTGAAACTCCGATTCCTTGTTCGGAACACACTCAGCTCGTTTTGCAACCAATTC
CTCATCGACTTTCTGAGCTTCACGAATTTGATGAGTCAATAATGGTTTGGCTTTTAATTCAGCTA
CTAACACATTGTCAGGTAGAACAGACAAGTGCACATTCATCGCTCGCAAAGCAAACAGTGATTTT
CGGCTTAAGGCGTCCACAACCAC
Found at i:65627734 original size:327 final size:327
Alignment explanation
Indices: 65627140--65627796 Score: 1305
Period size: 327 Copynumber: 2.0 Consensus size: 327
65627130 AGCAAACAGT
65627140 GATTTTCGGCTTAAGGCGTCCACAACCACATTAGCCTTTCCCGGGTGGTAATCAATGACAAGCTC
1 GATTTTCGGCTTAAGGCGTCCACAACCACATTAGCCTTTCCCGGGTGGTAATCAATGACAAGCTC
65627205 GTAATCTTTCAACAACTCAAGCCAACGTCTTTGTCGCAGATTCAAGTCTCGTTGAGTCATCAAAT
66 GTAATCTTTCAACAACTCAAGCCAACGTCTTTGTCGCAGATTCAAGTCTCGTTGAGTCATCAAAT
65627270 ATTTGAGACTTTTGTGATCCGAAAACACATGGCACTTCTCACCAAACAAATAATGTCGCCATATT
131 ATTTGAGACTTTTGTGATCCGAAAACACATGGCACTTCTCACCAAACAAATAATGTCGCCATATT
65627335 TTCAATGCAAACACAATGGCGGCTAGTTCGAGATCATGGGTCGGATAATTTCTCTCATGTGGCTT
196 TTCAATGCAAACACAATGGCGGCTAGTTCGAGATCATGGGTCGGATAATTTCTCTCATGTGGCTT
*
65627400 CAATTGTCTCGACGCATAGGCCACAACTCGACCTTCTTGCATCAATACGCAACCCAACCCAAGTA
261 CAATTGTCTCGACGCATAGGCCACAACTCGACCTTCTTGCATCAATACGCAACCCAACCCAAGGA
65627465 GG
326 GG
65627467 GATTTTCGGCTTAAGGCGTCCACAACCACATTAGCCTTTCCCGGGTGGTAATCAATGACAAGCTC
1 GATTTTCGGCTTAAGGCGTCCACAACCACATTAGCCTTTCCCGGGTGGTAATCAATGACAAGCTC
65627532 GTAATCTTTCAACAACTCAAGCCAACGTCTTTGTCGCAGATTCAAGTCTCGTTGAGTCATCAAAT
66 GTAATCTTTCAACAACTCAAGCCAACGTCTTTGTCGCAGATTCAAGTCTCGTTGAGTCATCAAAT
65627597 ATTTGAGACTTTTGTGATCCGAAAACACATGGCACTTCTCACCAAACAAATAATGTCGCCATATT
131 ATTTGAGACTTTTGTGATCCGAAAACACATGGCACTTCTCACCAAACAAATAATGTCGCCATATT
65627662 TTCAATGCAAACACAATGGCGGCTAGTTCGAGATCATGGGTCGGATAATTTCTCTCATGTGGCTT
196 TTCAATGCAAACACAATGGCGGCTAGTTCGAGATCATGGGTCGGATAATTTCTCTCATGTGGCTT
65627727 CAATTGTCTCGACGCATAGGCCACAACTCGACCTTCTTGCATCAATACGCAACCCAACCCAAGGA
261 CAATTGTCTCGACGCATAGGCCACAACTCGACCTTCTTGCATCAATACGCAACCCAACCCAAGGA
65627792 GG
326 GG
65627794 GAT
1 GAT
65627797 GCGTCACTAT
Statistics
Matches: 329, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
327 329 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (327 bp):
GATTTTCGGCTTAAGGCGTCCACAACCACATTAGCCTTTCCCGGGTGGTAATCAATGACAAGCTC
GTAATCTTTCAACAACTCAAGCCAACGTCTTTGTCGCAGATTCAAGTCTCGTTGAGTCATCAAAT
ATTTGAGACTTTTGTGATCCGAAAACACATGGCACTTCTCACCAAACAAATAATGTCGCCATATT
TTCAATGCAAACACAATGGCGGCTAGTTCGAGATCATGGGTCGGATAATTTCTCTCATGTGGCTT
CAATTGTCTCGACGCATAGGCCACAACTCGACCTTCTTGCATCAATACGCAACCCAACCCAAGGA
GG
Found at i:65638889 original size:43 final size:43
Alignment explanation
Indices: 65638841--65638932 Score: 116
Period size: 43 Copynumber: 2.1 Consensus size: 43
65638831 AGTAAGACCA
* *
65638841 TGGCATCGATATGTGATTCCGA-GTAAGACTC-TGTCTGGGACAG
1 TGGCATCGATATGTGATTAC-ATGTAAGAC-CACGTCTGGGACAG
* *
65638884 TGGCATCGATATGTGGTTACATGTAAGACCACGTCTGGGACAT
1 TGGCATCGATATGTGATTACATGTAAGACCACGTCTGGGACAG
65638927 TGGCAT
1 TGGCAT
65638933 TGTACCATTT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
42 2 0.05
43 41 0.95
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.28
Consensus pattern (43 bp):
TGGCATCGATATGTGATTACATGTAAGACCACGTCTGGGACAG
Found at i:65650161 original size:37 final size:37
Alignment explanation
Indices: 65650111--65650185 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
65650101 GTCGCAAGGT
* *
65650111 AAACCTCAGATCTCTATCCGAAATAATTGAAAAGGGC
1 AAACCTCAGATCTCTACCCAAAATAATTGAAAAGGGC
65650148 AAACCTCAGATCTCTACCCAAAATAATTGAAAAGGGC
1 AAACCTCAGATCTCTACCCAAAATAATTGAAAAGGGC
65650185 A
1 A
65650186 CTCCGTGATG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.43, C:0.23, G:0.15, T:0.20
Consensus pattern (37 bp):
AAACCTCAGATCTCTACCCAAAATAATTGAAAAGGGC
Found at i:65655622 original size:48 final size:48
Alignment explanation
Indices: 65655548--65655784 Score: 248
Period size: 48 Copynumber: 5.0 Consensus size: 48
65655538 AAGAGGGTAA
*
65655548 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATTTC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATC
*
65655596 GAA-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTGCATA--
1 -AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC--ACATATC
* * * * * *
65655644 AATGTCGATGCCATGTTCCAAACCTGGTCTTACACTGGCTTACATATC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATC
* * ** * **
65655692 AAGGCC-AAGCCATGTCTTAGACATGGTCTTACACTAGCTCTCGCATC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATC
* * * *
65655739 AATGGCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATA
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATA
65655785 CCTCTAGTAT
Statistics
Matches: 149, Mismatches: 33, Indels: 13
0.76 0.17 0.07
Matches are distributed among these distances:
46 4 0.03
47 36 0.24
48 104 0.70
49 2 0.01
50 3 0.02
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.27
Consensus pattern (48 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATC
Found at i:65655729 original size:95 final size:96
Alignment explanation
Indices: 65655547--65655784 Score: 336
Period size: 95 Copynumber: 2.5 Consensus size: 96
65655537 CAAGAGGGTA
* * * * *
65655547 AAATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATTTCGAAGCCGATGCCATGT
1 AAATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAAGCCGAAGCCATGT
*
65655612 CCCAGACATGGTCTTACACTAGCTCTTGCAT
66 CCCAGACATGGTCTTACACTAGCTCTCGCAT
* * *
65655643 AAATGTCGATGCCATGTTCCAAACCTGGTCTTACACTGGCTTACATATC-AAGGCC-AAGCCATG
1 AAATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAA-GCCGAAGCCATG
**
65655706 TCTTAGACATGGTCTTACACTAGCTCTCGCAT
65 TCCCAGACATGGTCTTACACTAGCTCTCGCAT
* *
65655738 CAATGGCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATA
1 AAATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATA
65655785 CCTCTAGTAT
Statistics
Matches: 126, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
95 81 0.64
96 45 0.36
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (96 bp):
AAATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAAGCCGAAGCCATGT
CCCAGACATGGTCTTACACTAGCTCTCGCAT
Found at i:65658203 original size:39 final size:40
Alignment explanation
Indices: 65658158--65658366 Score: 107
Period size: 41 Copynumber: 5.2 Consensus size: 40
65658148 CGGGGTTTAG
* * *
65658158 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
65658197 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * * **
65658237 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCCTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
65658277 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
* ** * * * *
65658318 CTGGATATAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
65658359 CCGGATAT
1 CCGGATAT
65658367 CATTCGAGTA
Statistics
Matches: 146, Mismatches: 20, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
39 18 0.12
40 60 0.41
41 65 0.45
42 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:65658228 original size:40 final size:41
Alignment explanation
Indices: 65658181--65658366 Score: 243
Period size: 41 Copynumber: 4.6 Consensus size: 41
65658171 CTCGCACAAG
* * * * * *
65658181 GCCTTCGGGTCTTAACCCGGATATGGTCAC-TAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
65658221 GCCTTCGGGACTTAGCCCGGATATAGTCGC-TAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
* * *
65658261 GCCTTC-GGATCCTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
65658302 GCCTTCGGGACTTAGCCTGGATATAGTCGCTTAGCACAAAA
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
65658343 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
65658367 CATTCGAGTA
Statistics
Matches: 129, Mismatches: 14, Indels: 5
0.87 0.09 0.03
Matches are distributed among these distances:
39 3 0.02
40 58 0.45
41 65 0.50
42 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (41 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
Found at i:65661746 original size:56 final size:56
Alignment explanation
Indices: 65661660--65661772 Score: 190
Period size: 56 Copynumber: 2.0 Consensus size: 56
65661650 ATATTTCTCG
* *
65661660 GAGGCTTCTAGTTAAGTATGGCCGAAATTTTGTTCGGGTCAACACGAATACCCGAT
1 GAGGCTTCCAGTTAAGTATGGCCGAAATTTTGCTCGGGTCAACACGAATACCCGAT
* *
65661716 GAGGCTTCCAGTTAAGTATGGCTGAAATTTTGCTCGGGTCAACTCGAATACCCGAT
1 GAGGCTTCCAGTTAAGTATGGCCGAAATTTTGCTCGGGTCAACACGAATACCCGAT
65661772 G
1 G
65661773 CGGATACCAC
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (56 bp):
GAGGCTTCCAGTTAAGTATGGCCGAAATTTTGCTCGGGTCAACACGAATACCCGAT
Found at i:65672972 original size:40 final size:40
Alignment explanation
Indices: 65672917--65673183 Score: 331
Period size: 40 Copynumber: 6.5 Consensus size: 40
65672907 TATTCGGATG
*
65672917 ATATCCGGGCTAAGTCTCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
65672957 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
65673000 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
65673040 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
65673083 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
65673123 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAG-TAGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTA-CT
*
65673163 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
65673184 ATACTTGGGT
Statistics
Matches: 197, Mismatches: 23, Indels: 15
0.84 0.10 0.06
Matches are distributed among these distances:
39 14 0.07
40 110 0.56
41 1 0.01
43 72 0.37
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:65673060 original size:83 final size:83
Alignment explanation
Indices: 65672921--65673162 Score: 448
Period size: 83 Copynumber: 2.9 Consensus size: 83
65672911 CGGATGATAT
* * * *
65672921 CCGGGCTAAGTCTCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCGAAGTCCCGAAGGCATTTG
65672986 TGCGAGTAGTTGCTATAC
66 TGCGAGTAGTTGCTATAC
65673004 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCGAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCGAAGTCCCGAAGGCATTTG
65673069 TGCGAGTAGTTGCTATAC
66 TGCGAGTAGTTGCTATAC
65673087 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCGAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCGAAGTCCCGAAGGCATTTG
65673152 TGCGAGTAGTT
66 TGCGAGTAGTT
65673163 ATATCCGGCT
Statistics
Matches: 155, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
83 155 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (83 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCGAAGTCCCGAAGGCATTTG
TGCGAGTAGTTGCTATAC
Found at i:65673166 original size:123 final size:121
Alignment explanation
Indices: 65672917--65673183 Score: 362
Period size: 123 Copynumber: 2.2 Consensus size: 121
65672907 TATTCGGATG
* *
65672917 ATATCCGGGCTAAGTCTCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATACCCGGGCTAAGTCCCGAAGGCA
* *
65672982 TTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
66 TTTGTGC--GTAGTTGCTATACCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTGACT
* *
65673040 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACTATACCCGGGCTAAGTCCCGAAG
* *
65673105 GCATTTGTGC-TAG-TGACTATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGT-AGTT
63 GCATTTGTGCGTAGTTG-CTATACCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTGA-CT
*
65673163 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
65673184 ATACTTGGGT
Statistics
Matches: 129, Mismatches: 10, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
122 16 0.12
123 75 0.58
124 1 0.01
126 37 0.29
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (121 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATACCCGGGCTAAGTCCCGAAGGCA
TTTGTGCGTAGTTGCTATACCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTGACT
Found at i:65681103 original size:40 final size:40
Alignment explanation
Indices: 65681048--65681271 Score: 310
Period size: 40 Copynumber: 5.5 Consensus size: 40
65681038 TATTCGGATG
65681048 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACT
65681088 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AG-TGACT
* *
65681131 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACT
** *
65681171 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACT
* *
65681211 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACT
*
65681251 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
65681272 ATACTTGGGT
Statistics
Matches: 167, Mismatches: 11, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
39 15 0.09
40 112 0.67
41 3 0.02
43 35 0.21
44 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACT
Found at i:65681191 original size:83 final size:80
Alignment explanation
Indices: 65681052--65681271 Score: 311
Period size: 83 Copynumber: 2.7 Consensus size: 80
65681042 CGGATGATAT
**
65681052 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
65681117 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
*
65681135 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
65681200 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * *
65681215 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
65681272 ATACTTGGGT
Statistics
Matches: 128, Mismatches: 7, Indels: 8
0.90 0.05 0.06
Matches are distributed among these distances:
79 16 0.12
80 45 0.35
81 2 0.02
83 65 0.51
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:65683800 original size:20 final size:20
Alignment explanation
Indices: 65683775--65683816 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
65683765 ATATTGCAAT
*
65683775 TATAGAAGCTATAATTGGCA
1 TATAGAAGCTATAATTGACA
65683795 TATAGAAGCTATAATTGACA
1 TATAGAAGCTATAATTGACA
65683815 TA
1 TA
65683817 CTTGCATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.43, C:0.10, G:0.17, T:0.31
Consensus pattern (20 bp):
TATAGAAGCTATAATTGACA
Done.