Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 204 of 322
Found at i:67019468 original size:28 final size:28
Alignment explanation
Indices: 67019325--67019481 Score: 117
Period size: 28 Copynumber: 5.6 Consensus size: 28
67019315 ACTCAATGTA
*
67019325 TCGCACACT-AGATGTCATACC-CGATACCT
1 TCGCACACTAAG-TGCCAT-CCTCGATA-CT
* * * **
67019354 T-GCACACTAAGTGCCGTTCTGGATGTT
1 TCGCACACTAAGTGCCATCCTCGATACT
67019381 TCGCACACTAAGTGCCATCCTC-ATTACT
1 TCGCACACTAAGTGCCATCCTCGA-TACT
* * *
67019409 TCGCACACTAAGTGCCATTCTGGAT-GT
1 TCGCACACTAAGTGCCATCCTCGATACT
* *
67019436 ATCGCACACTAAGTACCATCCCCGATACT
1 -TCGCACACTAAGTGCCATCCTCGATACT
**
67019465 TCGCACGTTAAGTGCCA
1 TCGCACACTAAGTGCCA
67019482 CATATAATTA
Statistics
Matches: 99, Mismatches: 22, Indels: 15
0.73 0.16 0.11
Matches are distributed among these distances:
27 5 0.05
28 89 0.90
29 5 0.05
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (28 bp):
TCGCACACTAAGTGCCATCCTCGATACT
Found at i:67025456 original size:32 final size:32
Alignment explanation
Indices: 67025427--67025503 Score: 118
Period size: 32 Copynumber: 2.4 Consensus size: 32
67025417 TTTAATTTTT
*
67025427 GTACATACATGTACTATATTGTACCAATTTCC
1 GTACATACATGTACCATATTGTACCAATTTCC
*
67025459 GTACATACCTGTACCATATTGTACCAATTTCC
1 GTACATACATGTACCATATTGTACCAATTTCC
* *
67025491 GTAGATACCTGTA
1 GTACATACATGTA
67025504 TCATCTCGTA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.35
Consensus pattern (32 bp):
GTACATACATGTACCATATTGTACCAATTTCC
Found at i:67025627 original size:28 final size:28
Alignment explanation
Indices: 67025596--67025695 Score: 128
Period size: 28 Copynumber: 3.6 Consensus size: 28
67025586 CCGATACCTT
*
67025596 GCACACTAAGTGCCGTTCTGGATGTTTC
1 GCACACTAAGTGCCATTCTGGATGTTTC
* * * **
67025624 GCACACTAAGTGCCATCCTCGTTACTTC
1 GCACACTAAGTGCCATTCTGGATGTTTC
*
67025652 GCACACTAAGTGCCATTCTGGATGTATC
1 GCACACTAAGTGCCATTCTGGATGTTTC
*
67025680 GCACACTAAGTACCAT
1 GCACACTAAGTGCCAT
67025696 CCCCGATACT
Statistics
Matches: 59, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 59 1.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTGGATGTTTC
Found at i:67025627 original size:56 final size:56
Alignment explanation
Indices: 67025561--67025722 Score: 195
Period size: 56 Copynumber: 2.9 Consensus size: 56
67025551 TGAATACTCA
* *
67025561 ATGTATCGCACACT-AGATGTCATACC-CGATACCTT-GCACACTAAGTGCCGTTCTGG
1 ATGTATCGCACACTAAG-TGCCAT-CCTCGATA-CTTCGCACACTAAGTGCCATTCTGG
* *
67025617 ATGTTTCGCACACTAAGTGCCATCCTCGTTACTTCGCACACTAAGTGCCATTCTGG
1 ATGTATCGCACACTAAGTGCCATCCTCGATACTTCGCACACTAAGTGCCATTCTGG
* * * **
67025673 ATGTATCGCACACTAAGTACCATCCCCGATACTTCGTACGTTAAGTGCCA
1 ATGTATCGCACACTAAGTGCCATCCTCGATACTTCGCACACTAAGTGCCA
67025723 CATATAATTA
Statistics
Matches: 92, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
55 5 0.05
56 85 0.92
57 2 0.02
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.28
Consensus pattern (56 bp):
ATGTATCGCACACTAAGTGCCATCCTCGATACTTCGCACACTAAGTGCCATTCTGG
Found at i:67028990 original size:32 final size:32
Alignment explanation
Indices: 67028944--67029009 Score: 89
Period size: 32 Copynumber: 2.1 Consensus size: 32
67028934 GCTTACAGCT
* *
67028944 ATCAGTAGTGGTAATTTGATCGGCACAAAGCC
1 ATCAGTAGTGGTAATATGATCAGCACAAAGCC
*
67028976 ATCAGTAGCT-GTAATATGATCAGCACACAGCC
1 ATCAGTAG-TGGTAATATGATCAGCACAAAGCC
67029008 AT
1 AT
67029010 GGGTAAATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
32 29 0.97
33 1 0.03
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.24
Consensus pattern (32 bp):
ATCAGTAGTGGTAATATGATCAGCACAAAGCC
Found at i:67029516 original size:27 final size:26
Alignment explanation
Indices: 67029486--67029625 Score: 133
Period size: 27 Copynumber: 5.3 Consensus size: 26
67029476 CAAAACAATC
*
67029486 ATTTTAC-CTTATAGGGGTATTTCAATA
1 ATTTTACACTTA-A-GGGTATTTCGATA
*
67029513 ATTTTACAC--AAGGGTATTTCGGTA
1 ATTTTACACTTAAGGGTATTTCGATA
* *
67029537 ATTTTACACTTCAAGGGTATTTCGGTG
1 ATTTTACACTT-AAGGGTATTTCGATA
*
67029564 ATTTTACCCTATAAGGGTATTTCGATA
1 ATTTTACACT-TAAGGGTATTTCGATA
* * * *
67029591 ATTATACAAATTGAGGGTATTTTGATA
1 ATTTTAC-ACTTAAGGGTATTTCGATA
67029618 ATTTTACA
1 ATTTTACA
67029626 TACTAGGATA
Statistics
Matches: 95, Mismatches: 12, Indels: 13
0.79 0.10 0.11
Matches are distributed among these distances:
24 20 0.21
25 1 0.01
26 2 0.02
27 69 0.73
28 3 0.03
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.41
Consensus pattern (26 bp):
ATTTTACACTTAAGGGTATTTCGATA
Found at i:67032686 original size:40 final size:39
Alignment explanation
Indices: 67032623--67032842 Score: 259
Period size: 40 Copynumber: 5.6 Consensus size: 39
67032613 ATTCGGATTG
*
67032623 ATAACCGGGCTAAG-CCCGAAGGCATTCATGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTTACT
*
67032662 ATAACCGGGCCAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACT
* * *
67032702 ATAACCGAGCCAAGGCCCG-AGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGC-ATTGTGCGAGTTACT
*
67032741 ATAATCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGC-ATTGTGCGAGTTACT
* *
67032781 ATAACCGGGCTAAGTCCTGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTA-CT
* **
67032821 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
67032843 TACTTGGTTT
Statistics
Matches: 160, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
39 62 0.39
40 96 0.60
41 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (39 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACT
Found at i:67032831 original size:79 final size:77
Alignment explanation
Indices: 67032623--67032842 Score: 255
Period size: 79 Copynumber: 2.8 Consensus size: 77
67032613 ATTCGGATTG
* * * *
67032623 ATAACCGGGCTAAGCCCGAAGGCATTCATGCGAGTTACTATAACCGGGCCAAGTCCCGAAGGCAT
1 ATAACCGGGCTAAGCCCGAAGGCATTGA-GCGAGTTACTATATCC-GGCTAAGTCCCGAAGGCAA
67032688 TTGTGCGAGTTACT
64 TTGTGCGAGTTACT
* * * *
67032702 ATAACCGAGCCAAGGCCCG-AGGCAATTGTGCGAGTTACTATAATCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAA-GCCCGAAGGC-ATTGAGCGAGTTACTAT-ATCCGGCTAAGTCCCGAAGGCA
67032766 ATTGTGCGAGTTACT
63 ATTGTGCGAGTTACT
* **
67032781 ATAACCGGGCTAAGTCCTGAAGGCATTTGAGCGAG-TAGCTATATCCGGCTAAACCCCGAAGG
1 ATAACCGGGCTAAG-CCCGAAGGCA-TTGAGCGAGTTA-CTATATCCGGCTAAGTCCCGAAGG
67032843 TACTTGGTTT
Statistics
Matches: 119, Mismatches: 15, Indels: 14
0.80 0.10 0.09
Matches are distributed among these distances:
78 1 0.01
79 92 0.77
80 26 0.22
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (77 bp):
ATAACCGGGCTAAGCCCGAAGGCATTGAGCGAGTTACTATATCCGGCTAAGTCCCGAAGGCAATT
GTGCGAGTTACT
Found at i:67034509 original size:33 final size:33
Alignment explanation
Indices: 67034467--67034560 Score: 179
Period size: 33 Copynumber: 2.8 Consensus size: 33
67034457 AGGCAAGCTT
67034467 TTCCACAACCTCCATTCCCGACTAATACGGCTG
1 TTCCACAACCTCCATTCCCGACTAATACGGCTG
67034500 TTCCACAACCTCCATTCCCGACTAATACGGCTG
1 TTCCACAACCTCCATTCCCGACTAATACGGCTG
*
67034533 TTCCACAATCTCCATTCCCGACTAATAC
1 TTCCACAACCTCCATTCCCGACTAATAC
67034561 CACCCCCGCA
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 60 1.00
ACGTcount: A:0.26, C:0.39, G:0.10, T:0.26
Consensus pattern (33 bp):
TTCCACAACCTCCATTCCCGACTAATACGGCTG
Found at i:67040273 original size:27 final size:27
Alignment explanation
Indices: 67040235--67040287 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
67040225 GATATTAGGC
67040235 TAGTGATGTGTGTATTCGGTCATGAAT
1 TAGTGATGTGTGTATTCGGTCATGAAT
*
67040262 TAGTGATGTGTGTATTCGGTTATGAA
1 TAGTGATGTGTGTATTCGGTCATGAA
67040288 GTTGCACATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.23, C:0.06, G:0.30, T:0.42
Consensus pattern (27 bp):
TAGTGATGTGTGTATTCGGTCATGAAT
Found at i:67040808 original size:40 final size:39
Alignment explanation
Indices: 67040745--67040955 Score: 302
Period size: 40 Copynumber: 5.3 Consensus size: 39
67040735 ATTCGGATTG
67040745 ATAACCGGGCTAAG-CCCGAAGGCATTCGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTTACT
*
67040784 ATAACCGGGCCAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACT
* *
67040824 ATAATCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGC-ATTGTGCGAGTTACT
67040864 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGC-ATTGTGCGAGTTACT
*
67040904 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTA-CT
*
67040944 ATATCC-GGCTAA
1 ATAACCGGGCTAA
67040956 ACCCCAAAGG
Statistics
Matches: 161, Mismatches: 6, Indels: 10
0.91 0.03 0.06
Matches are distributed among these distances:
39 22 0.14
40 136 0.84
41 3 0.02
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACT
Found at i:67043253 original size:27 final size:27
Alignment explanation
Indices: 67043222--67043346 Score: 79
Period size: 27 Copynumber: 4.6 Consensus size: 27
67043212 TAGTTTACCA
* *
67043222 AATTACCAAAGTACCCTTGATTTACAG
1 AATTACCAAACTACCCTCGATTTACAG
** *
67043249 AATTACCATTCTACCCTCGATTTATAG
1 AATTACCAAACTACCCTCGATTTACAG
*** * * *
67043276 AATTACCATTTTACCCTCAATTTATAA
1 AATTACCAAACTACCCTCGATTTACAG
* **** *
67043303 AATTATCGTTTTACCCTCGATTTACAA
1 AATTACCAAACTACCCTCGATTTACAG
* *
67043330 AATTACTAAAATACCCT
1 AATTACCAAACTACCCT
67043347 TGGTTTGTAA
Statistics
Matches: 80, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 80 1.00
ACGTcount: A:0.35, C:0.23, G:0.06, T:0.36
Consensus pattern (27 bp):
AATTACCAAACTACCCTCGATTTACAG
Found at i:67043345 original size:54 final size:54
Alignment explanation
Indices: 67043215--67043346 Score: 129
Period size: 54 Copynumber: 2.4 Consensus size: 54
67043205 AATACTTTAG
* * ** *
67043215 TTTACCAAATTACCAAAGTACCCTTGATTTACAGAATTACCATTCTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCAATTTACAAAATTACCATTCTACCCTCGA
* * *** * * * *
67043269 TTTATAGAATTACCATTTTACCCTCAATTTATAAAATTATCGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCAATTTACAAAATTACCATTCTACCCTCGA
*
67043323 TTTACAAAATTACTAAAATACCCT
1 TTTACAAAATTACCAAAATACCCT
67043347 TGGTTTGTAA
Statistics
Matches: 59, Mismatches: 19, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
54 59 1.00
ACGTcount: A:0.35, C:0.23, G:0.05, T:0.36
Consensus pattern (54 bp):
TTTACAAAATTACCAAAATACCCTCAATTTACAAAATTACCATTCTACCCTCGA
Found at i:67043358 original size:27 final size:27
Alignment explanation
Indices: 67043328--67043429 Score: 114
Period size: 28 Copynumber: 3.7 Consensus size: 27
67043318 CTCGATTTAC
**
67043328 AAAATTACTAAAATACCCTTGGTTTGT
1 AAAATTACTAAAATACCCTTAATTTGT
*
67043355 AAAATTACTAAAATACCCCCTAATTTGT
1 AAAATTACTAAAATA-CCCTTAATTTGT
* * *
67043383 AAAATTACTGAAATACCCTCAACTTGT
1 AAAATTACTAAAATACCCTTAATTTGT
* *
67043410 AAAAATTACCAAAGTACCCT
1 -AAAATTACTAAAATACCCT
67043430 CGATTTATAG
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
27 24 0.38
28 39 0.62
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (27 bp):
AAAATTACTAAAATACCCTTAATTTGT
Found at i:67043444 original size:55 final size:54
Alignment explanation
Indices: 67043314--67043447 Score: 142
Period size: 55 Copynumber: 2.4 Consensus size: 54
67043304 ATTATCGTTT
* * **** *
67043314 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACTGAAATACCCTCAACTTGTAAAATTACCAAAA
* * * *
67043368 TACCCCCTAATTTGTAAAATTACTGAAATACCCTCAACTTGTAAAAATTACCAAAG
1 TACCCTC-GATTTATAAAATTACTGAAATACCCTCAACTTGT-AAAATTACCAAAA
*
67043424 TACCCTCGATTTATAGAATTACTG
1 TACCCTCGATTTATAAAATTACTG
67043448 TTTTACCCTT
Statistics
Matches: 63, Mismatches: 15, Indels: 3
0.78 0.19 0.04
Matches are distributed among these distances:
54 6 0.10
55 40 0.63
56 17 0.27
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACTGAAATACCCTCAACTTGTAAAATTACCAAAA
Found at i:67043454 original size:27 final size:27
Alignment explanation
Indices: 67043424--67043515 Score: 130
Period size: 27 Copynumber: 3.4 Consensus size: 27
67043414 ATTACCAAAG
*
67043424 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
67043451 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
67043478 TACCCTTGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
67043505 TACCCTCGATT
1 TACCCTCGATT
67043516 GTGAAATTAC
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.27, C:0.22, G:0.09, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:67043576 original size:18 final size:19
Alignment explanation
Indices: 67043553--67043588 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
67043543 GTAAAATTAC
67043553 CAAAA-TACCCCTGATTTA
1 CAAAATTACCCCTGATTTA
*
67043571 CAAAATTACCCTTGATTT
1 CAAAATTACCCCTGATTT
67043589 GTAGATTTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (19 bp):
CAAAATTACCCCTGATTTA
Found at i:67044394 original size:20 final size:20
Alignment explanation
Indices: 67044370--67044456 Score: 140
Period size: 20 Copynumber: 4.3 Consensus size: 20
67044360 GATATGATAT
* *
67044370 ACATGAT-TGATATGATATGT
1 ACATGATATG-TATGAAATGC
67044390 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
67044410 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
67044430 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
67044450 ACATGAT
1 ACATGAT
67044457 GTATTCATAA
Statistics
Matches: 64, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
20 62 0.97
21 2 0.03
ACGTcount: A:0.39, C:0.09, G:0.20, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:67044397 original size:11 final size:11
Alignment explanation
Indices: 67044369--67044441 Score: 59
Period size: 11 Copynumber: 7.2 Consensus size: 11
67044359 GGATATGATA
67044369 TACATGAT-TG
1 TACATGATATG
*
67044379 -ATATGATATG
1 TACATGATATG
67044389 TACATGATATG
1 TACATGATATG
*
67044400 T--ATGAAATG
1 TACATGATATG
*
67044409 CACATGATATG
1 TACATGATATG
*
67044420 T--ATGAAATG
1 TACATGATATG
*
67044429 CACATGATATG
1 TACATGATATG
67044440 TA
1 TA
67044442 TGAAATGCAC
Statistics
Matches: 47, Mismatches: 10, Indels: 11
0.69 0.15 0.16
Matches are distributed among these distances:
9 20 0.43
10 2 0.04
11 25 0.53
ACGTcount: A:0.38, C:0.08, G:0.19, T:0.34
Consensus pattern (11 bp):
TACATGATATG
Found at i:67044584 original size:52 final size:51
Alignment explanation
Indices: 67044506--67044641 Score: 224
Period size: 52 Copynumber: 2.7 Consensus size: 51
67044496 GAGGAAGTGC
*
67044506 AAAAGAGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
67044558 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
67044609 AAAAGGGCTT-TGCCCCAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT
67044642 AGGCCTCCAG
Statistics
Matches: 82, Mismatches: 1, Indels: 5
0.93 0.01 0.06
Matches are distributed among these distances:
48 5 0.06
49 9 0.11
50 8 0.10
51 25 0.30
52 35 0.43
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:67044603 original size:25 final size:26
Alignment explanation
Indices: 67044506--67044641 Score: 190
Period size: 26 Copynumber: 5.3 Consensus size: 26
67044496 GAGGAAGTGC
*
67044506 AAAAGAGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
67044532 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
67044558 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
67044584 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
67044609 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
67044632 AAAAGAGGCT
1 AAAAG-GGCT
67044642 AGGCCTCCAG
Statistics
Matches: 100, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 31 0.31
26 57 0.57
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:67059381 original size:27 final size:27
Alignment explanation
Indices: 67059350--67059411 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
67059340 TAGTTTACCA
* *
67059350 AATTACCAAAGTACCCTTGATTTACAG
1 AATTACCAAACTACCCTCGATTTACAG
** *
67059377 AATTACCATTCTACCCTCGATTTATAG
1 AATTACCAAACTACCCTCGATTTACAG
67059404 AATTACCA
1 AATTACCA
67059412 TTTTACCCTC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.32
Consensus pattern (27 bp):
AATTACCAAACTACCCTCGATTTACAG
Found at i:67059412 original size:27 final size:27
Alignment explanation
Indices: 67059361--67059435 Score: 105
Period size: 27 Copynumber: 2.8 Consensus size: 27
67059351 ATTACCAAAG
* *
67059361 TACCCTTGATTTACAGAATTACCATTC
1 TACCCTCGATTTATAGAATTACCATTC
*
67059388 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTC
* *
67059415 TACCCTCAATTTATAAAATTA
1 TACCCTCGATTTATAGAATTA
67059436 TCGTTTTACC
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.33, C:0.23, G:0.05, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTC
Found at i:67059442 original size:27 final size:27
Alignment explanation
Indices: 67059377--67059448 Score: 99
Period size: 27 Copynumber: 2.7 Consensus size: 27
67059367 TGATTTACAG
* * *
67059377 AATTACCATTCTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCAATTTATAA
67059404 AATTACCATTTTACCCTCAATTTATAA
1 AATTACCATTTTACCCTCAATTTATAA
* *
67059431 AATTATCGTTTTACCCTC
1 AATTACCATTTTACCCTC
67059449 TTACAAAATT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.31, C:0.25, G:0.04, T:0.40
Consensus pattern (27 bp):
AATTACCATTTTACCCTCAATTTATAA
Found at i:67059514 original size:28 final size:28
Alignment explanation
Indices: 67059453--67059525 Score: 112
Period size: 28 Copynumber: 2.6 Consensus size: 28
67059443 ACCCTCTTAC
* *
67059453 AAAATTACTAAAATA-CCCTTGGTTTGT
1 AAAATTACTAAAATACCCCCTAGTTTGT
67059480 AAAATTACTAAAATACCCCCTAGTTTGT
1 AAAATTACTAAAATACCCCCTAGTTTGT
*
67059508 AAAATTACTGAAATACCC
1 AAAATTACTAAAATACCC
67059526 TCGACTTGTA
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 15 0.36
28 27 0.64
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (28 bp):
AAAATTACTAAAATACCCCCTAGTTTGT
Found at i:67059539 original size:28 final size:27
Alignment explanation
Indices: 67059453--67059785 Score: 154
Period size: 27 Copynumber: 12.3 Consensus size: 27
67059443 ACCCTCTTAC
* *
67059453 AAAATTACTAAAATACCCTTGGTTTGT
1 AAAATTACTAAAATACCCTCGATTTGT
* *
67059480 AAAATTACTAAAATACCCCCTAGTTTGT
1 AAAATTACTAAAATACCCTCGA-TTTGT
* *
67059508 AAAATTACTGAAATACCCTCGACTTGT
1 AAAATTACTAAAATACCCTCGATTTGT
* * *
67059535 AAAAATTACCAAAGTACCCTCGATTTAT
1 -AAAATTACTAAAATACCCTCGATTTGT
* **** * **
67059563 AGAATTACTGTTTTACCTTCGATTTAC
1 AAAATTACTAAAATACCCTCGATTTGT
* *** * **
67059590 AGAATTACTATTTTACCCTTGATTTCC
1 AAAATTACTAAAATACCCTCGATTTGT
* ***
67059617 AAAATTACCATTTTACCCTCGA-TTGT
1 AAAATTACTAAAATACCCTCGATTTGT
* * * **
67059643 GAAATTACTGAAATACCC-CTATAGGGT
1 AAAATTACTAAAATACCCTCGAT-TTGT
* * * *
67059670 AGAATTACCAAAACACCC-CTAGTTTGT
1 AAAATTACTAAAATACCCTCGA-TTTGT
* * *
67059697 AAAATTACCAAAATACAACT-GGTTTGT
1 AAAATTACTAAAATAC-CCTCGATTTGT
* * **
67059724 GAAATTACTGAAATACCCTTAATTTGT
1 AAAATTACTAAAATACCCTCGATTTGT
* **
67059751 AAAATTACCAAAATACCC-CTGATTTAC
1 AAAATTACTAAAATACCCTC-GATTTGT
67059778 AAAATTAC
1 AAAATTAC
67059786 CCTTGATTTG
Statistics
Matches: 233, Mismatches: 64, Indels: 18
0.74 0.20 0.06
Matches are distributed among these distances:
25 2 0.01
26 16 0.07
27 167 0.72
28 48 0.21
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.33
Consensus pattern (27 bp):
AAAATTACTAAAATACCCTCGATTTGT
Found at i:67059569 original size:55 final size:55
Alignment explanation
Indices: 67059453--67059572 Score: 134
Period size: 55 Copynumber: 2.2 Consensus size: 55
67059443 ACCCTCTTAC
* * ** * * *
67059453 AAAATTACTAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCCCTAGTTTGT
1 AAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAATACCCCCGAGTTTAT
* *
67059508 AAAATTACTGAAATACCCTCGACTTGTAAAAATTACCAAAGTACCCTCGA-TTTAT
1 AAAATTACTGAAATACCCTCGACTTGT-AAAATTACCAAAATACCCCCGAGTTTAT
*
67059563 AGAATTACTG
1 AAAATTACTG
67059573 TTTTACCTTC
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
55 36 0.67
56 18 0.33
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (55 bp):
AAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAATACCCCCGAGTTTAT
Found at i:67059731 original size:188 final size:186
Alignment explanation
Indices: 67059349--67059713 Score: 437
Period size: 188 Copynumber: 1.9 Consensus size: 186
67059339 TTAGTTTACC
* *
67059349 AAATTACCAAAGTACCCTTGATTTACAGAATTACCATTCTACCCTCGATTTATAGAATTACCATT
1 AAATTACCAAAGTACCCTCGATTTACAGAATTACCATTCTACCCTCGATTTACAGAATTACCATT
* * *
67059414 TTACCCTCAATTTATAAAATTATCGTTTTACCCTCTTACAAAATTACTAAAATACCCTTGGTTTG
66 TTACCCTCAATTTACAAAATTACCATTTTACCCTCTTACAAAATTACTAAAATACCCTTGG--TG
* * ** *
67059479 TAAAATTACTAAAATACCCCCTAGTTTGTAAAATTACTGAAATACCCTCGACTTGTAA
129 TAAAATTACCAAAACACCCCCTAGTTTGTAAAATTACCAAAATACACTCGACTTGTAA
* ** * * *
67059537 AAATTACCAAAGTACCCTCGATTTATAGAATTACTGTTTTACCTTCGATTTACAGAATTACTATT
1 AAATTACCAAAGTACCCTCGATTTACAGAATTACCATTCTACCCTCGATTTACAGAATTACCATT
** * *** *
67059602 TTACCCTTGATTTCCAAAATTACCATTTTACCCTCGATTGTGAAATTACTGAAATACCCCTATAG
66 TTACCCTCAATTTACAAAATTACCATTTTACCCTC--TTACAAAATTACTAAAATA-CCCT-T-G
*
67059667 G-GTAGAATTACCAAAACA-CCCCTAGTTTGTAAAATTACCAAAATACA
126 GTGTAAAATTACCAAAACACCCCCTAGTTTGTAAAATTACCAAAATACA
67059714 ACTGGTTTGT
Statistics
Matches: 148, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
188 86 0.58
189 26 0.18
190 29 0.20
191 4 0.03
192 1 0.01
193 2 0.01
ACGTcount: A:0.36, C:0.22, G:0.08, T:0.34
Consensus pattern (186 bp):
AAATTACCAAAGTACCCTCGATTTACAGAATTACCATTCTACCCTCGATTTACAGAATTACCATT
TTACCCTCAATTTACAAAATTACCATTTTACCCTCTTACAAAATTACTAAAATACCCTTGGTGTA
AAATTACCAAAACACCCCCTAGTTTGTAAAATTACCAAAATACACTCGACTTGTAA
Found at i:67059782 original size:18 final size:19
Alignment explanation
Indices: 67059759--67059794 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
67059749 GTAAAATTAC
67059759 CAAAA-TACCCCTGATTTA
1 CAAAATTACCCCTGATTTA
*
67059777 CAAAATTACCCTTGATTT
1 CAAAATTACCCCTGATTT
67059795 GTAGATTTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (19 bp):
CAAAATTACCCCTGATTTA
Found at i:67059871 original size:27 final size:27
Alignment explanation
Indices: 67059839--67059908 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
67059829 GACTAAAATA
67059839 CCCCTAATA-GGTAAAAAGACCGTAAAG
1 CCCCT-ATAGGGTAAAAAGACCGTAAAG
**
67059866 CCCCTATAGGGTAAAGTGACCGTAATA-
1 CCCCTATAGGGTAAAAAGACCGTAA-AG
* *
67059893 CCCTTATATGGTAAAA
1 CCCCTATAGGGTAAAA
67059909 TGATGAATAC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
26 3 0.08
27 32 0.89
28 1 0.03
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.21
Consensus pattern (27 bp):
CCCCTATAGGGTAAAAAGACCGTAAAG
Found at i:67060564 original size:25 final size:25
Alignment explanation
Indices: 67060536--67060583 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
67060526 TTATAGTATG
* * *
67060536 AAAATGACTATTTTGCCCCTAGGTT
1 AAAATGACCATTATACCCCTAGGTT
67060561 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
67060584 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTT
Found at i:67060644 original size:20 final size:20
Alignment explanation
Indices: 67060619--67060705 Score: 131
Period size: 20 Copynumber: 4.3 Consensus size: 20
67060609 GATATGATAT
*
67060619 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
67060639 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
67060659 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
*
67060679 ACATGATATGTATCAAATGC
1 ACATGATATGTATGAAATGC
67060699 ACATGAT
1 ACATGAT
67060706 GTATTCATAA
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
20 60 0.97
21 2 0.03
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:67060790 original size:26 final size:26
Alignment explanation
Indices: 67060755--67060929 Score: 246
Period size: 26 Copynumber: 6.8 Consensus size: 26
67060745 GAGGAAGTGC
* * **
67060755 AAAAGAGCTTATGCCTCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
67060781 ACAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
67060807 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
67060833 AAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
67060859 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
67060885 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
67060910 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
67060930 ATTAAAAGAG
Statistics
Matches: 133, Mismatches: 16, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
25 33 0.25
26 100 0.75
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:67060833 original size:52 final size:52
Alignment explanation
Indices: 67060755--67060942 Score: 303
Period size: 52 Copynumber: 3.7 Consensus size: 52
67060745 GAGGAAGTGC
* * *
67060755 AAAAGAGCTTATGCCTCAGTTTATTGACAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
*
67060807 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
67060859 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
67060910 AAAAGGGCTT-TGCCCCAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT
67060943 AGGCCTCCAG
Statistics
Matches: 130, Mismatches: 5, Indels: 5
0.93 0.04 0.04
Matches are distributed among these distances:
48 5 0.04
49 9 0.07
50 8 0.06
51 24 0.18
52 84 0.65
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:67061231 original size:31 final size:31
Alignment explanation
Indices: 67061196--67061274 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
67061186 CGTTTATAGT
67061196 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
67061227 AAAGGCTTCGGCCCAGTTATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
67061258 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
67061275 AACCGTTAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:67062576 original size:28 final size:28
Alignment explanation
Indices: 67062523--67062576 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
67062513 ATTCCACACA
*
67062523 CATATATATATATATATCTAAGCAAATT
1 CATATATATATATATATATAAGCAAATT
*
67062551 CATATATATATATCA-ATATAATCAAA
1 CATATATATATAT-ATATATAAGCAAA
67062577 CTAATAAGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
28 22 0.96
29 1 0.04
ACGTcount: A:0.50, C:0.11, G:0.02, T:0.37
Consensus pattern (28 bp):
CATATATATATATATATATAAGCAAATT
Found at i:67065359 original size:51 final size:49
Alignment explanation
Indices: 67065229--67065420 Score: 215
Period size: 49 Copynumber: 3.9 Consensus size: 49
67065219 ACTATTGTGA
* * *
67065229 GGTCACGTGCGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGCGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* * * *
67065278 GGT-AGCATGCGCAGTACTAAGTGCAGGCTACTATGCGTACCTGAAAACTGT
1 GGTCA-CATGCGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-T-T
* * * * *
67065329 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATT
1 GGTCACATGCGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* * *
67065378 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAG
1 GGTCACATGCGTAGTACTAAGTGCAGGCTACTACGCGTACCAG
67065421 GTAGCTTCGA
Statistics
Matches: 119, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
48 1 0.01
49 78 0.66
50 2 0.02
51 37 0.31
52 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.27
Consensus pattern (49 bp):
GGTCACATGCGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
Found at i:67065404 original size:100 final size:100
Alignment explanation
Indices: 67065231--67065418 Score: 322
Period size: 100 Copynumber: 1.9 Consensus size: 100
67065221 TATTGTGAGG
*
67065231 TCACGTGCGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTAGCATGCGCAGTACT
1 TCACGTGCGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTAGCATGCGCAGTACT
67065296 AAGTGCAGGCTACTATGCGTACCTGAAAACTGTGA
66 AAGTGCAGGCTACTATGCGTACCTGAAAACTGTGA
* * * * *
67065331 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCATGTGTAGTACT
1 TCACGTGCGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTAGCATGCGCAGTACT
67065396 AAGTGCAGGCTACTATGCGTACC
66 AAGTGCAGGCTACTATGCGTACC
67065419 AGGTAGCTTC
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 82 1.00
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (100 bp):
TCACGTGCGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTAGCATGCGCAGTACT
AAGTGCAGGCTACTATGCGTACCTGAAAACTGTGA
Found at i:67072009 original size:17 final size:18
Alignment explanation
Indices: 67071987--67072020 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
67071977 TGATTTTAAT
67071987 ACATGGGATTT-TGATAA
1 ACATGGGATTTATGATAA
*
67072004 ACATGGTATTTATGATA
1 ACATGGGATTTATGATA
67072021 TGCAGATGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.35, C:0.06, G:0.21, T:0.38
Consensus pattern (18 bp):
ACATGGGATTTATGATAA
Found at i:67072165 original size:23 final size:24
Alignment explanation
Indices: 67072100--67072175 Score: 93
Period size: 24 Copynumber: 3.2 Consensus size: 24
67072090 GAGGAAGTGC
** *
67072100 AAAAGGGC-TTATGCCTTAGTTATC
1 AAAA-GGCTTTATGCCCCAGTTATT
*
67072124 AAAAGGGTTTATGCCCCAGTTATT
1 AAAAGGCTTTATGCCCCAGTTATT
67072148 AAAAGGCTTT-TGCCCCAGTTATT
1 AAAAGGCTTTATGCCCCAGTTATT
67072171 AAAAG
1 AAAAG
67072176 AGGATAGGCC
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
23 20 0.43
24 26 0.57
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.32
Consensus pattern (24 bp):
AAAAGGCTTTATGCCCCAGTTATT
Found at i:67080329 original size:11 final size:11
Alignment explanation
Indices: 67080293--67080348 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
67080283 CATGGTATGT
67080293 ATGATATGCAC
1 ATGATATGCAC
* *
67080304 ATGACATG--T
1 ATGATATGCAC
67080313 ATGATATGCAC
1 ATGATATGCAC
*
67080324 ATGATATG--T
1 ATGATATGCAC
67080333 ATGATATGCAC
1 ATGATATGCAC
67080344 ATGAT
1 ATGAT
67080349 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:67080348 original size:20 final size:20
Alignment explanation
Indices: 67080282--67080348 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
67080272 ATTTTGATAA
*
67080282 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
67080302 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
67080322 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
67080342 ACATGAT
1 ACATGAT
67080349 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:67080473 original size:23 final size:24
Alignment explanation
Indices: 67080397--67080516 Score: 145
Period size: 24 Copynumber: 5.0 Consensus size: 24
67080387 GGAGGAAGTG
*
67080397 CAAAAGGGCTTATGCCCCAGGTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
67080421 CAAAAAGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
67080445 CAAAAGGGCTTATGCCCCGGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
67080469 -TAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
67080492 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
67080517 ATGATAAAGC
Statistics
Matches: 83, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
23 20 0.24
24 52 0.63
25 11 0.13
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:67082013 original size:56 final size:56
Alignment explanation
Indices: 67081927--67082117 Score: 242
Period size: 56 Copynumber: 3.4 Consensus size: 56
67081917 TCCTAGACAA
* * *
67081927 GGTCTAACTCGCACAAATATATCAGAGTCACATATCGAAGTCAACGTATAAAACGT
1 GGTCTAACTCGCACACATATATCGGAGTCACATATCGAAGCCAACGTATAAAACGT
* * *
67081983 GGTCTTACTCGCAGACATATATCGGAGTCACATATCGATGCCAACGTATAAAACGT
1 GGTCTAACTCGCACACATATATCGGAGTCACATATCGAAGCCAACGTATAAAACGT
* * * * *
67082039 GGTCTTACTCGCACACATATAT-GAAGTCACATAAC-AATGCCAACATATAAAACGC
1 GGTCTAACTCGCACACATATATCGGAGTCACATATCGAA-GCCAACGTATAAAACGT
* *
67082094 AGTCTAACTCACACACATATATCG
1 GGTCTAACTCGCACACATATATCG
67082118 ATGCCATGGT
Statistics
Matches: 118, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
54 1 0.01
55 45 0.38
56 72 0.61
ACGTcount: A:0.37, C:0.24, G:0.15, T:0.24
Consensus pattern (56 bp):
GGTCTAACTCGCACACATATATCGGAGTCACATATCGAAGCCAACGTATAAAACGT
Found at i:67085508 original size:28 final size:28
Alignment explanation
Indices: 67085477--67085532 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
67085467 TTTCTAATTA
* * *
67085477 AATTCAATTTTAATCCTTTTTATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
* *
67085505 AATTTACTTTAAATACTTTATATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
67085533 TTATAAANNN
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (28 bp):
AATTCAATTTAAATACTTTATATATTTT
Found at i:67089348 original size:16 final size:16
Alignment explanation
Indices: 67089327--67089364 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
67089317 GAGGAGGAGA
67089327 AGATGTACCTAAGTCT
1 AGATGTACCTAAGTCT
67089343 AGATGTACCTAAGTCT
1 AGATGTACCTAAGTCT
67089359 AGATGT
1 AGATGT
67089365 TGACCTGCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.32
Consensus pattern (16 bp):
AGATGTACCTAAGTCT
Found at i:67094278 original size:16 final size:16
Alignment explanation
Indices: 67094257--67094288 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
67094247 ATTAGGGTTA
67094257 ATTGATTAAATTAGGG
1 ATTGATTAAATTAGGG
67094273 ATTGATTAAATTAGGG
1 ATTGATTAAATTAGGG
67094289 TTAATTGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.25, T:0.38
Consensus pattern (16 bp):
ATTGATTAAATTAGGG
Found at i:67094306 original size:20 final size:19
Alignment explanation
Indices: 67094247--67094317 Score: 103
Period size: 20 Copynumber: 3.8 Consensus size: 19
67094237 AGTTTAGGGT
67094247 ATTAGGGTTAATTGATTAA
1 ATTAGGGTTAATTGATTAA
67094266 ATTAGGG---ATTGATTAA
1 ATTAGGGTTAATTGATTAA
67094282 ATTAGGGTTAATTGATTTAA
1 ATTAGGGTTAATTGA-TTAA
*
67094302 TTTAGGGTTAATTGAT
1 ATTAGGGTTAATTGAT
67094318 ACATAATCGT
Statistics
Matches: 47, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
16 16 0.34
19 13 0.28
20 18 0.38
ACGTcount: A:0.34, C:0.00, G:0.23, T:0.44
Consensus pattern (19 bp):
ATTAGGGTTAATTGATTAA
Found at i:67095077 original size:126 final size:125
Alignment explanation
Indices: 67094849--67095356 Score: 700
Period size: 126 Copynumber: 4.0 Consensus size: 125
67094839 TTTCTACAAG
* *
67094849 AATAATTTGGAGTAGACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGTAGGATGCACTGTC
1 AATAATTT-GAGTAGACGTTTCTGAAAAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTC
** * * * *
67094914 AGTAAAATTTCTGAAAAAGGCTCCTA-AGTGGACGCTCTTTCGCTACAGTAGGTT-GTAAAAA
65 AACAAAATTTCTGAAAAAAGCTCCCACA-TGGACGCTCTTTTGCTACAGTA-GTTCGTAGAAA
* * *
67094975 AATAATTCTGAATAGACGTTTCTGAAAAAATAGTGTCGAAAACGCTACAAGCAGGAAGCACTGTC
1 AATAATT-TGAGTAGACGTTTCTGAAAAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTC
* * *
67095040 AGA-AAAATTTCTGAAAAAAGCTCCTACATGGATGCTCTTTTGCTACAGTAGTTTGTAGAAA
65 A-ACAAAATTTCTGAAAAAAGCTCCCACATGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
*
67095101 AATAATTTTGAGTAGACGTTTCT-AAACAAATAATGTCGAAAACGCTTCAAGCAGGATGCACTGT
1 AATAA-TTTGAGTAGACGTTTCTGAAA-AAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGT
* * *
67095165 CAACAAAATTTTTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGCAGAAA
64 CAACAAAATTTCTGAAAAAAGCTCCCACATGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
*
67095227 AATAATTTCGAGTAGACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTC
1 AATAATTT-GAGTAGACGTTTCTGAAAAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTC
* * * *
67095292 AATAAAATTTCTTAAAAAAAGCTCCCACGTGGACGCTCTTTTGCTGCAGTAGTTCGTAGAAA
65 AACAAAATTTC-TGAAAAAAGCTCCCACATGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
67095354 AAT
1 AAT
67095357 GAAGCTATAA
Statistics
Matches: 345, Mismatches: 27, Indels: 19
0.88 0.07 0.05
Matches are distributed among these distances:
125 10 0.03
126 279 0.81
127 56 0.16
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (125 bp):
AATAATTTGAGTAGACGTTTCTGAAAAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTCA
ACAAAATTTCTGAAAAAAGCTCCCACATGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
Found at i:67098870 original size:17 final size:18
Alignment explanation
Indices: 67098845--67098886 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
67098835 AACTAGGAAA
* *
67098845 AGGAAACATAT-AAGGTT
1 AGGATACATATGAAGGCT
67098862 AGGATACATATGAAGGCT
1 AGGATACATATGAAGGCT
67098880 AGGATAC
1 AGGATAC
67098887 GCACCTAGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 10 0.45
18 12 0.55
ACGTcount: A:0.43, C:0.10, G:0.26, T:0.21
Consensus pattern (18 bp):
AGGATACATATGAAGGCT
Found at i:67111150 original size:48 final size:47
Alignment explanation
Indices: 67111078--67111187 Score: 143
Period size: 48 Copynumber: 2.3 Consensus size: 47
67111068 AAACAAGCAA
*
67111078 TATTGAAATTTTAATTATAATTGCATAAA-TGAAGTAAATATCAAATAG
1 TATTGAAA-TTTAATTATAATTGCATAAATTGAA-AAAATATCAAATAG
*
67111126 TATTGTAAATTTAATTA-AATTTGCATAAATTGAAAAAATATCGAATAG
1 TATTG-AAATTTAATTATAA-TTGCATAAATTGAAAAAATATCAAATAG
67111174 TATTGAAAATTTAA
1 TATTG-AAATTTAA
67111188 AATTATCACT
Statistics
Matches: 56, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
47 2 0.04
48 47 0.84
49 7 0.12
ACGTcount: A:0.48, C:0.04, G:0.10, T:0.38
Consensus pattern (47 bp):
TATTGAAATTTAATTATAATTGCATAAATTGAAAAAATATCAAATAG
Found at i:67111340 original size:11 final size:11
Alignment explanation
Indices: 67111321--67111384 Score: 58
Period size: 11 Copynumber: 5.9 Consensus size: 11
67111311 TTGTAAACAA
*
67111321 AGAAATTTGAT
1 AGAATTTTGAT
67111332 AGAATTTTGAT
1 AGAATTTTGAT
*
67111343 AGAATTTTGAG
1 AGAATTTTGAT
* **
67111354 AAAATTTCAAT
1 AGAATTTTGAT
*
67111365 -GAAATTTGAT
1 AGAATTTTGAT
*
67111375 AGATTTTTGA
1 AGAATTTTGA
67111385 AGGGAATATT
Statistics
Matches: 40, Mismatches: 12, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
10 6 0.15
11 34 0.85
ACGTcount: A:0.41, C:0.02, G:0.17, T:0.41
Consensus pattern (11 bp):
AGAATTTTGAT
Found at i:67112319 original size:136 final size:136
Alignment explanation
Indices: 67112075--67112332 Score: 426
Period size: 136 Copynumber: 1.9 Consensus size: 136
67112065 TAAAAGATCT
* *
67112075 AAATAAAAAATTTTCTATTTTAGGGAGGGATGGCCTCTATCAGTCCCTTGGCTCAGCCATTGGTC
1 AAATAAAAAATTTTCTATTTTAGGGAAGGATGGCCTCTATCAGCCCCTTGGCTCAGCCATTGGTC
* * *
67112140 CCCAATCTAGTCTATAAATTATGTGCCAACCATTAAAGGTAATTAGTAGGAAAAAAAATAGTCTA
66 CCCAATCTAATCTATAAATTATATGCCAACCATTAAAGGTAATTAGTAAGAAAAAAAATAGTCTA
67112205 GAAGAA
131 GAAGAA
* * * *
67112211 AAATAAAAAATTTTCTATTTTAGGGAAGGTTGGCCTCTGTCAGCCCCTTGGCTCTGTCATTGGTC
1 AAATAAAAAATTTTCTATTTTAGGGAAGGATGGCCTCTATCAGCCCCTTGGCTCAGCCATTGGTC
*
67112276 TCCAATCTAATCTATAAATTATATGCCAACCATTAAAGGTAATTAGTAAGAAAAAAA
66 CCCAATCTAATCTATAAATTATATGCCAACCATTAAAGGTAATTAGTAAGAAAAAAA
67112333 TTAATCTAAA
Statistics
Matches: 112, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
136 112 1.00
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (136 bp):
AAATAAAAAATTTTCTATTTTAGGGAAGGATGGCCTCTATCAGCCCCTTGGCTCAGCCATTGGTC
CCCAATCTAATCTATAAATTATATGCCAACCATTAAAGGTAATTAGTAAGAAAAAAAATAGTCTA
GAAGAA
Found at i:67127771 original size:17 final size:17
Alignment explanation
Indices: 67127749--67127781 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
67127739 AATCGAAAAA
67127749 GCCCGATCAA-TGATAAT
1 GCCCGAT-AAGTGATAAT
67127766 GCCCGATAAGTGATAA
1 GCCCGATAAGTGATAA
67127782 ATGATAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (17 bp):
GCCCGATAAGTGATAAT
Found at i:67128578 original size:26 final size:26
Alignment explanation
Indices: 67128548--67128598 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
67128538 GTTATGAAAA
*
67128548 TATACTTGAAATATAAAGATGTGATT
1 TATACATGAAATATAAAGATGTGATT
** *
67128574 TATACATGTTATATAAATATGTGAT
1 TATACATGAAATATAAAGATGTGAT
67128599 ATGGAAAGTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.41, C:0.04, G:0.14, T:0.41
Consensus pattern (26 bp):
TATACATGAAATATAAAGATGTGATT
Found at i:67130540 original size:39 final size:39
Alignment explanation
Indices: 67130473--67130807 Score: 573
Period size: 39 Copynumber: 8.5 Consensus size: 39
67130463 ACAAAGCATG
* * *
67130473 CGGGACTTTAAGCCCGGATATAATACCAGCAC-AAAGCCTG
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
* *
67130513 CGAGACTTTAGCCCAGATATAACACCAGCACGAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
67130553 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
67130592 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
67130631 CGAGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
67130670 CGGGACTTAGCCTGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
67130709 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
67130748 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
67130787 CGGGACTTAGCCCGGATATAA
1 CGGGACTTAGCCCGGATATAA
67130808 TTCTCCATTA
Statistics
Matches: 283, Mismatches: 11, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
39 264 0.93
40 19 0.07
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.19
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:67139791 original size:17 final size:17
Alignment explanation
Indices: 67139769--67139801 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
67139759 CATGAAACAT
67139769 TTAATGCACCCATATTC
1 TTAATGCACCCATATTC
67139786 TTAATGCACCCATATT
1 TTAATGCACCCATATT
67139802 ATTCGGGAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.30, C:0.27, G:0.06, T:0.36
Consensus pattern (17 bp):
TTAATGCACCCATATTC
Found at i:67141192 original size:17 final size:18
Alignment explanation
Indices: 67141146--67141192 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
67141136 ATTTTGATAT
67141146 ATTTTTGATGATTTCTAC
1 ATTTTTGATGATTTCTAC
67141164 ATTTTTGATGATTTCTAC
1 ATTTTTGATGATTTCTAC
67141182 ATTTTTG-TGAT
1 ATTTTTGATGAT
67141193 CATTGCTTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
17 4 0.14
18 25 0.86
ACGTcount: A:0.21, C:0.09, G:0.13, T:0.57
Consensus pattern (18 bp):
ATTTTTGATGATTTCTAC
Found at i:67141916 original size:43 final size:43
Alignment explanation
Indices: 67141868--67142014 Score: 136
Period size: 43 Copynumber: 3.4 Consensus size: 43
67141858 TTTGACATGT
*
67141868 GATTACATGTAAGACCATGTTTGGGACATTGGCATTGTATTGA
1 GATTACATGTAAGACCATGTTTGGGACATTGGCATCGTATTGA
* * * * * *
67141911 GATTACGTGTAAGACCATGTCTGAGACATTAGCATCGTTAAT-C
1 GATTACATGTAAGACCATGTTTGGGACATTGGCATCG-TATTGA
* * * * * *
67141954 GATTTCGTGTAAGACCCTATTTGGGACAGTGGCATCG-ATATGT
1 GATTACATGTAAGACCATGTTTGGGACATTGGCATCGTAT-TGA
*
67141997 GATAACATGTAAGACCAT
1 GATTACATGTAAGACCAT
67142015 ATCTAGGATA
Statistics
Matches: 81, Mismatches: 20, Indels: 6
0.76 0.19 0.06
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 76 0.94
44 3 0.04
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTTTGGGACATTGGCATCGTATTGA
Found at i:67143305 original size:23 final size:23
Alignment explanation
Indices: 67143275--67143322 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
67143265 GAGAATAAGC
67143275 ATGTGTTAAAGTTTCATGAAGAA
1 ATGTGTTAAAGTTTCATGAAGAA
67143298 ATGTGTTAAAGTTTCATGAAGAA
1 ATGTGTTAAAGTTTCATGAAGAA
67143321 AT
1 AT
67143323 TCTATGTGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.40, C:0.04, G:0.21, T:0.35
Consensus pattern (23 bp):
ATGTGTTAAAGTTTCATGAAGAA
Found at i:67145524 original size:20 final size:20
Alignment explanation
Indices: 67145495--67145546 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
67145485 CGGGTAAGGG
*
67145495 ACACGGGCGTGTCCCAATGC
1 ACACGGGCGTGTCCCAATAC
*
67145515 ACATGGGCGTGTCCCAATAC
1 ACACGGGCGTGTCCCAATAC
*
67145535 GCACGGGCGTGT
1 ACACGGGCGTGT
67145547 GCATTGCCTC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.19, C:0.31, G:0.33, T:0.17
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAATAC
Found at i:67146882 original size:47 final size:47
Alignment explanation
Indices: 67146830--67146969 Score: 183
Period size: 47 Copynumber: 3.0 Consensus size: 47
67146820 TCACTTTGGG
* * *
67146830 TGTGAGTAAATACCTTGATTTGGCTACGGGCCATGGTATAGGTATTT
1 TGTGAGTAATTACCTTGATTTGGCTACGGGCCATGGTATAGGTACTC
* * * *
67146877 TGTGAGGAGTTACCTTGATTTGGCTACAGGTCATGGTATAGGTACTC
1 TGTGAGTAATTACCTTGATTTGGCTACGGGCCATGGTATAGGTACTC
* *
67146924 TGGGA-TAAGTTACCTTGATTTGGCTACGGGCCATGATATAGGTACT
1 TGTGAGTAA-TTACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
67146970 TATCGATTGT
Statistics
Matches: 79, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
46 1 0.01
47 78 0.99
ACGTcount: A:0.23, C:0.14, G:0.29, T:0.34
Consensus pattern (47 bp):
TGTGAGTAATTACCTTGATTTGGCTACGGGCCATGGTATAGGTACTC
Found at i:67150622 original size:20 final size:19
Alignment explanation
Indices: 67150586--67150637 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 19
67150576 AGGGGCTATT
*
67150586 TTGTAAA-GTTGTAAAATAA
1 TTGTAAATG-TGTGAAATAA
67150605 GTTGTAAATGTGTGAAATAA
1 -TTGTAAATGTGTGAAATAA
67150625 TTG-AAAT-TGTGAA
1 TTGTAAATGTGTGAA
67150638 TTGCTATAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 6 0.20
18 4 0.13
19 3 0.10
20 16 0.53
21 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.37
Consensus pattern (19 bp):
TTGTAAATGTGTGAAATAA
Found at i:67153463 original size:13 final size:13
Alignment explanation
Indices: 67153445--67153470 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67153435 TATGATTAGA
67153445 ATCCTTAATGAGT
1 ATCCTTAATGAGT
67153458 ATCCTTAATGAGT
1 ATCCTTAATGAGT
67153471 CTAGTTTCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
ATCCTTAATGAGT
Found at i:67155597 original size:46 final size:45
Alignment explanation
Indices: 67155544--67155806 Score: 139
Period size: 46 Copynumber: 5.7 Consensus size: 45
67155534 AGATTTGTGT
67155544 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATG-TA
* *
67155590 GCCAGTGTAAGACCATGTTTGGGACATGACATCGG---CATTGA-GACGA
1 GCCAGTGTAAGA-CATGTCTGGGACATG-CATCGGCCACATT-ATG--TA
* * * * *
67155636 GGACTAGTGTTAGACATGTCTGGGACATGCATCAGCCTCGA-GATGTTA
1 -G-CCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATG-TA
* * * * * * * *
67155684 ACCAGTGTCAGATATGTCTGGGGCATGCGTTGGCTACGA-GATGT-
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGTA
* **
67155728 GCTAGTGTAAGACATGTCCAGGACATGCATCGG-CACAGTTACATGT-
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-TT--ATGTA
* * *
67155774 GTCAGTGTAAGACCTGTCTGGGACCTGGCATCG
1 GCCAGTGTAAGACATGTCTGGGACAT-GCATCG
67155807 ACACAGATGG
Statistics
Matches: 164, Mismatches: 37, Indels: 31
0.71 0.16 0.13
Matches are distributed among these distances:
42 1 0.01
43 2 0.01
44 24 0.15
45 6 0.04
46 76 0.46
47 35 0.21
48 17 0.10
49 2 0.01
50 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGTA
Found at i:67158286 original size:14 final size:13
Alignment explanation
Indices: 67158255--67158293 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
67158245 ATATTATAAT
*
67158255 TATTTTGTGTTAA
1 TATTTTATGTTAA
67158268 TATTTTATGTTAA
1 TATTTTATGTTAA
67158281 TAATTTTATGTTA
1 T-ATTTTATGTTA
67158294 CAAAATGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 13 0.54
14 11 0.46
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:67159946 original size:47 final size:47
Alignment explanation
Indices: 67159894--67159997 Score: 172
Period size: 47 Copynumber: 2.2 Consensus size: 47
67159884 TTAGGATTTT
*
67159894 ATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCACATATGTGATAAGGCAGAATGGCCA
* * *
67159941 TTGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCACATATGTGATAAGGCAGAATGGCCA
67159988 ATGTGATGAA
1 ATGTGATGAA
67159998 CGTGGAAGTG
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 51 1.00
ACGTcount: A:0.36, C:0.12, G:0.27, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCACATATGTGATAAGGCAGAATGGCCA
Found at i:67160013 original size:47 final size:47
Alignment explanation
Indices: 67159894--67160037 Score: 155
Period size: 47 Copynumber: 3.1 Consensus size: 47
67159884 TTAGGATTTT
* * *
67159894 ATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAACGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
67159941 TTGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATAAACGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * * *
67159988 ATGTGATGAACGTGGAA-GTGTATATATATGGTAAAGCCGAATGGCTA
1 ATGTGATAAACGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
67160035 ATG
1 ATG
67160038 CGAAATGTGT
Statistics
Matches: 82, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
47 79 0.96
48 3 0.04
ACGTcount: A:0.35, C:0.11, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATAAACGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:67160077 original size:46 final size:46
Alignment explanation
Indices: 67160011--67160110 Score: 128
Period size: 46 Copynumber: 2.1 Consensus size: 46
67160001 GGAAGTGTAT
* *
67160011 ATATATGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATATGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
* * * *
67160057 ATATGTGGTCAAGCCAAATGGCTAATGTGAGATATGTATGAGATGTG
1 ATATATGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATG-G
67160104 TATATAT
1 -ATATAT
67160111 ATATTGTGGC
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
46 39 0.87
47 1 0.02
48 5 0.11
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (46 bp):
ATATATGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
Found at i:67161818 original size:25 final size:25
Alignment explanation
Indices: 67161768--67161818 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
67161758 TGTGTAACAA
* *
67161768 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
67161793 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
67161818 C
1 C
67161819 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:67163056 original size:14 final size:13
Alignment explanation
Indices: 67163025--67163063 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
67163015 ATATTATAAT
*
67163025 TATTTTGTGTTAA
1 TATTTTATGTTAA
67163038 TATTTTATGTTAA
1 TATTTTATGTTAA
67163051 TAATTTTATGTTA
1 T-ATTTTATGTTA
67163064 CAAAATGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 13 0.54
14 11 0.46
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:67164841 original size:22 final size:22
Alignment explanation
Indices: 67164766--67164843 Score: 63
Period size: 22 Copynumber: 3.4 Consensus size: 22
67164756 ACATGCACAT
*
67164766 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCAGAATGGCCA
*
67164788 ATGTGATAAATGTG-A-ACAT-GCATA
1 ATGTGAT-AA-G-GCAGA-ATGGC-CA
67164812 TATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
67164835 ATGTGATAA
1 ATGTGATAA
67164844 ATGTGAACAT
Statistics
Matches: 44, Mismatches: 3, Indels: 18
0.68 0.05 0.28
Matches are distributed among these distances:
22 17 0.39
23 10 0.23
24 9 0.20
25 8 0.18
ACGTcount: A:0.37, C:0.12, G:0.27, T:0.24
Consensus pattern (22 bp):
ATGTGATAAGGCAGAATGGCCA
Found at i:67164888 original size:22 final size:22
Alignment explanation
Indices: 67164813--67164888 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
67164803 ACATGCATAT
*
67164813 ATGTGATAAGGCAGAATGGCCA
1 ATGTGATAAGGTAGAATGGCCA
* *
67164835 ATGTGATAAATGT-GAACAT-GCATA
1 ATGTGAT-AAGGTAG-A-ATGGC-CA
67164859 TATGTGATAAGGTAGAATGGCCA
1 -ATGTGATAAGGTAGAATGGCCA
67164882 ATGTGAT
1 ATGTGAT
67164889 GAACGCGGAA
Statistics
Matches: 42, Mismatches: 5, Indels: 14
0.69 0.08 0.23
Matches are distributed among these distances:
22 15 0.36
23 9 0.21
24 10 0.24
25 8 0.19
ACGTcount: A:0.37, C:0.09, G:0.28, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGTAGAATGGCCA
Found at i:67164907 original size:94 final size:94
Alignment explanation
Indices: 67164741--67164931 Score: 249
Period size: 94 Copynumber: 2.0 Consensus size: 94
67164731 TTAGGATTTT
* * * *
67164741 ATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAACA
1 ATGTGATAAATGTGAACATGCACATATGTGATAAGGCAGAATGGCCAATGTGATAAACGGGAACA
*
67164806 TGCATATATGTGATAAGGCAGAATGGCCA
66 TGCATATATGTGATAAAGCAGAATGGCCA
* * *
67164835 ATGTGATAAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCAATGTGATGAACGCGGAA-
1 ATGTGATAAATGTGAACATGCACATATGTGATAAGGCAGAATGGCCAATGTGATAAACG-GGAAC
* * * * *
67164899 GTGTATATATGTGGTAAAGCCGAATGGCTA
65 ATGCATATATGTGATAAAGCAGAATGGCCA
67164929 ATG
1 ATG
67164932 CGAAATGTGT
Statistics
Matches: 83, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
94 80 0.96
95 3 0.04
ACGTcount: A:0.36, C:0.11, G:0.28, T:0.26
Consensus pattern (94 bp):
ATGTGATAAATGTGAACATGCACATATGTGATAAGGCAGAATGGCCAATGTGATAAACGGGAACA
TGCATATATGTGATAAAGCAGAATGGCCA
Found at i:67164926 original size:47 final size:47
Alignment explanation
Indices: 67164741--67164888 Score: 260
Period size: 47 Copynumber: 3.1 Consensus size: 47
67164731 TTAGGATTTT
* * *
67164741 ATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
67164788 ATGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
*
67164835 ATGTGATAAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCA
1 ATGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
67164882 ATGTGAT
1 ATGTGAT
67164889 GAACGCGGAA
Statistics
Matches: 97, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 97 1.00
ACGTcount: A:0.36, C:0.11, G:0.26, T:0.26
Consensus pattern (47 bp):
ATGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
Found at i:67164958 original size:46 final size:46
Alignment explanation
Indices: 67164905--67164995 Score: 146
Period size: 46 Copynumber: 2.0 Consensus size: 46
67164895 GGAAGTGTAT
* *
67164905 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
* *
67164951 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATG
67164996 TGTATATATA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.34, C:0.08, G:0.31, T:0.27
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
Found at i:67168177 original size:43 final size:43
Alignment explanation
Indices: 67168027--67168191 Score: 138
Period size: 43 Copynumber: 3.8 Consensus size: 43
67168017 ACATTAGATT
* * * *
67168027 ATCGAGATGTGATTACATGTAAGACCATGTCTGGGACATTGGA
1 ATCGATATGTGATAACATGTAAGACCATATCTGGGACATTGGC
* * * *
67168070 ATTG-TATTGAGATTAA-GTGTAAGACCATATCTAGGACATTGGC
1 ATCGATA-TGTGA-TAACATGTAAGACCATATCTGGGACATTGGC
* * ** * * * *
67168113 ATCGTTAAT-CGATTTCGTGTAAGACCTTGTCTGGGACAGTGGC
1 ATCGAT-ATGTGATAACATGTAAGACCATATCTGGGACATTGGC
67168156 ATCGATATGTGATAACATGTAAGACCATATCTGGGA
1 ATCGATATGTGATAACATGTAAGACCATATCTGGGA
67168192 TATGACATTG
Statistics
Matches: 93, Mismatches: 23, Indels: 12
0.73 0.18 0.09
Matches are distributed among these distances:
42 4 0.04
43 84 0.90
44 4 0.04
45 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (43 bp):
ATCGATATGTGATAACATGTAAGACCATATCTGGGACATTGGC
Found at i:67171405 original size:17 final size:17
Alignment explanation
Indices: 67171379--67171513 Score: 66
Period size: 17 Copynumber: 7.7 Consensus size: 17
67171369 AATTTAGTCC
*
67171379 TATATTTATTATATTAT
1 TATATATATTATATTAT
*
67171396 TATATATATTGTATTAT
1 TATATATATTATATTAT
* * *
67171413 T-TGTTTATTTTAATT-T
1 TATATATATTAT-ATTAT
*
67171429 TACTTTTATATTATA-TAT
1 TA--TATATATTATATTAT
* *
67171447 TATA-AAATTATTTTAT
1 TATATATATTATATTAT
67171463 TATGAGTATTATT-T-TTAAT
1 TAT-A-TA-TATTATATT-AT
67171482 TATATATTATTATTACTTAT
1 TATATA-TATTA-TA-TTAT
67171502 TATATATATTAT
1 TATATATATTAT
67171514 TTTCCTTAAA
Statistics
Matches: 91, Mismatches: 12, Indels: 29
0.69 0.09 0.22
Matches are distributed among these distances:
15 6 0.07
16 16 0.18
17 28 0.31
18 8 0.09
19 20 0.22
20 11 0.12
21 2 0.02
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.61
Consensus pattern (17 bp):
TATATATATTATATTAT
Found at i:67171494 original size:20 final size:18
Alignment explanation
Indices: 67171444--67171516 Score: 62
Period size: 20 Copynumber: 4.0 Consensus size: 18
67171434 TTATATTATA
*
67171444 TATTATA-AAATTA-TTT
1 TATTATATATATTATTTT
*
67171460 TATTATGA-GTATTATTTT
1 TATTAT-ATATATTATTTT
*
67171478 TAATTATATATTATTATTACT
1 T-ATTATATA-TATTATT-TT
67171499 TATTATATATATTATTTT
1 TATTATATATATTATTTT
67171517 CCTTAAATTA
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
16 6 0.13
17 5 0.11
18 6 0.13
19 12 0.26
20 15 0.33
21 2 0.04
ACGTcount: A:0.36, C:0.01, G:0.03, T:0.60
Consensus pattern (18 bp):
TATTATATATATTATTTT
Found at i:67171632 original size:26 final size:23
Alignment explanation
Indices: 67171566--67171643 Score: 59
Period size: 23 Copynumber: 3.2 Consensus size: 23
67171556 TATTTTCACA
*
67171566 TATATTATATTTATTA-ATTACT
1 TATATTATATCTATTATATTACT
* *
67171588 TATATATATATTGTTTTATACGTTACTT
1 TATAT-TATA-TCTATTATA--TTAC-T
* *
67171616 TATATTATATCTATTATTTTTCT
1 TATATTATATCTATTATATTACT
67171639 TATAT
1 TATAT
67171644 GTTTATATTA
Statistics
Matches: 44, Mismatches: 6, Indels: 11
0.72 0.10 0.18
Matches are distributed among these distances:
22 5 0.11
23 10 0.23
24 8 0.18
25 1 0.02
26 6 0.14
27 8 0.18
28 6 0.14
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.60
Consensus pattern (23 bp):
TATATTATATCTATTATATTACT
Found at i:67171720 original size:20 final size:19
Alignment explanation
Indices: 67171673--67171720 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
67171663 ATATAATCTT
67171673 TATTATGTT-TTATTTTCA
1 TATTATGTTATTATTTTCA
* *
67171691 TATTAT-TTATTGTTTTTA
1 TATTATGTTATTATTTTCA
67171709 TATATATGTTAT
1 TAT-TATGTTAT
67171721 GTATATCATG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 2 0.08
18 16 0.64
19 3 0.12
20 4 0.16
ACGTcount: A:0.25, C:0.02, G:0.06, T:0.67
Consensus pattern (19 bp):
TATTATGTTATTATTTTCA
Found at i:67184210 original size:21 final size:21
Alignment explanation
Indices: 67184186--67184240 Score: 78
Period size: 20 Copynumber: 2.7 Consensus size: 21
67184176 CGCTCAAGGA
67184186 AAGCCGATTGATCCATCTCAG
1 AAGCCGATTGATCCATCTCAG
*
67184207 AAGCGGAGTT-AT-CATCTCAG
1 AAGCCGA-TTGATCCATCTCAG
67184227 AAGCCGATTGATCC
1 AAGCCGATTGATCC
67184241 CTCAATTTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
19 2 0.07
20 16 0.55
21 9 0.31
22 2 0.07
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (21 bp):
AAGCCGATTGATCCATCTCAG
Found at i:67209483 original size:46 final size:46
Alignment explanation
Indices: 67209416--67209591 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
67209406 TGTAACCCAC
* * *
67209416 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * *
67209462 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-G--GAC--GTTCGCAT
* *
67209512 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
67209555 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
67209592 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 2 0.02
46 61 0.56
47 27 0.25
48 2 0.02
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:67209537 original size:93 final size:93
Alignment explanation
Indices: 67209423--67209594 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
67209413 CACCCATAAG
* *
67209423 CGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
67209488 ACGAGTTCAGATGCCTAGTTACATCTCA
66 ACGAGTTCAGATGCCTAGTTACATCTCA
* *
67209516 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
67209581 ACGAGTTCGGATGC
66 ACGAGTTCAGATGC
67209595 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCAGATGCCTAGTTACATCTCA
Found at i:67209610 original size:46 final size:46
Alignment explanation
Indices: 67209465--67209603 Score: 135
Period size: 47 Copynumber: 3.0 Consensus size: 46
67209455 TTCGCATCCA
*
67209465 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGC-CTAGTTA-CATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC
* * * * *
67209513 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA--
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATC
67209558 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
67209604 CTAGTGACAT
Statistics
Matches: 74, Mismatches: 10, Indels: 16
0.74 0.10 0.16
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 28 0.38
47 29 0.39
48 2 0.03
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
Found at i:67227365 original size:56 final size:56
Alignment explanation
Indices: 67227279--67227412 Score: 189
Period size: 56 Copynumber: 2.4 Consensus size: 56
67227269 CATGGCATCA
* * *
67227279 ATATATGTGTGCGAGTACGATCACATTTTATACGA-TGGCATCGATATGTGACTCTG
1 ATATATGTGTGCGAGTAAGACCACATTTTATAC-ATTGGCATCGATATGTGACTCCG
* * *
67227335 ATATATGTATACGAGTAAGACCACATTTTATACATTGGCATCTATATGTGACTCCG
1 ATATATGTGTGCGAGTAAGACCACATTTTATACATTGGCATCGATATGTGACTCCG
*
67227391 ATATATGTGTGTGAGTAAGACC
1 ATATATGTGTGCGAGTAAGACC
67227413 CTGTCTGGGA
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
55 1 0.01
56 67 0.99
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.34
Consensus pattern (56 bp):
ATATATGTGTGCGAGTAAGACCACATTTTATACATTGGCATCGATATGTGACTCCG
Found at i:67232719 original size:15 final size:16
Alignment explanation
Indices: 67232701--67232730 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67232691 AATTGTTTTA
67232701 TTACA-AATTTCACTC
1 TTACATAATTTCACTC
67232716 TTACATAATTTCACT
1 TTACATAATTTCACT
67232731 TACTCTATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (16 bp):
TTACATAATTTCACTC
Found at i:67248068 original size:94 final size:94
Alignment explanation
Indices: 67247907--67248838 Score: 1765
Period size: 94 Copynumber: 9.9 Consensus size: 94
67247897 TTCCTCAAAG
67247907 ACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAGTAAGGCAATTT
1 ACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAGTAAGGCAATTT
67247972 ACTTAATTCAAATAGCATATAAAATCTGC
66 ACTTAATTCAAATAGCATATAAAATCTGC
67248001 ACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAGTAAGGCAATTT
1 ACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAGTAAGGCAATTT
67248066 ACTTAATTCAAATAGCATATAAAATCTGC
66 ACTTAATTCAAATAGCATATAAAATCTGC
67248095 ACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAGTAAGGCAATTT
1 ACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAGTAAGGCAATTT
67248160 ACTTAATTCAAATAGCATATAAAATCTGC
66 ACTTAATTCAAATAGCATATAAAATCTGC
67248189 ACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAGTAAGGCAATTT
1 ACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAGTAAGGCAATTT
67248254 ACTTAATTCAAATAGCATATAAAATCTGC
66 ACTTAATTCAAATAGCATATAAAATCTGC
67248283 ACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAGTAAGGCAATTT
1 ACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAGTAAGGCAATTT
*
67248348 ACTTAATTCAAATAGCATATAAAATCTGT
66 ACTTAATTCAAATAGCATATAAAATCTGC
67248377 ACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAGTAAGGCAATTT
1 ACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAGTAAGGCAATTT
* *
67248442 ACTTAATTCAGATAGCATATAAAATCTGT
66 ACTTAATTCAAATAGCATATAAAATCTGC
*
67248471 ACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAAGGCAATTT
1 ACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAGTAAGGCAATTT
* *
67248536 ACTTAATTCAGATAGCATATAAAATCTGT
66 ACTTAATTCAAATAGCATATAAAATCTGC
* *
67248565 ACACAATGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAAGGCAATTT
1 ACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAGTAAGGCAATTT
67248630 ACTTAATTCAAATAGCATATAAAATCTGC
66 ACTTAATTCAAATAGCATATAAAATCTGC
67248659 ACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAGTAAGGCAATTT
1 ACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAGTAAGGCAATTT
67248724 ACTTAATTCAAATAGCATATAAAATCTGC
66 ACTTAATTCAAATAGCATATAAAATCTGC
* * *
67248753 ACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATATGGCAACTT
1 ACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAGTAAGGCAATTT
67248818 ACTTAATTCAAATAGCATATA
66 ACTTAATTCAAATAGCATATA
67248839 CGGTCACATT
Statistics
Matches: 827, Mismatches: 11, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 827 1.00
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.30
Consensus pattern (94 bp):
ACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAGTAAGGCAATTT
ACTTAATTCAAATAGCATATAAAATCTGC
Found at i:67254038 original size:46 final size:44
Alignment explanation
Indices: 67253985--67254157 Score: 149
Period size: 46 Copynumber: 3.8 Consensus size: 44
67253975 ATTCGTGTGT
67253985 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTA-GA
*
67254031 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG--TATTGAGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCCATT-AGA
* *
67254076 CGAGGGCTAGTGTAAGACATGTCTAGGACATGCAAT-GG-CC-TCGAGA
1 -GA--GCTAGTGTAAGACATGTCTGGGACATGC-ATCGGCCCAT-TAGA
* *
67254122 CGTAAGCCAGTGTATGACATGTCTGGGACATGCATC
1 -G--AGCTAGTGTAAGACATGTCTGGGACATGCATC
67254158 AGCTACGAAA
Statistics
Matches: 108, Mismatches: 7, Indels: 24
0.78 0.05 0.17
Matches are distributed among these distances:
45 7 0.06
46 52 0.48
47 29 0.27
48 20 0.19
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (44 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTAGA
Found at i:67254087 original size:48 final size:45
Alignment explanation
Indices: 67253985--67254107 Score: 144
Period size: 47 Copynumber: 2.6 Consensus size: 45
67253975 ATTCGTGTGT
67253985 GAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCACATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGGCATCGG-C-CATTATGA
*
67254031 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-TATTGA-GA
1 GAGCTAGTGTAAGA-CATGTCTGGGACATGGCATCGGCCATT-ATGA
*
67254076 CGAGGGCTAGTGTAAGACATGTCTAGGACATG
1 -GA--GCTAGTGTAAGACATGTCTGGGACATG
67254108 CAATGGCCTC
Statistics
Matches: 69, Mismatches: 2, Indels: 11
0.84 0.02 0.13
Matches are distributed among these distances:
45 5 0.07
46 17 0.25
47 28 0.41
48 19 0.28
ACGTcount: A:0.28, C:0.17, G:0.32, T:0.24
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCATTATGA
Found at i:67254134 original size:94 final size:92
Alignment explanation
Indices: 67253987--67254157 Score: 222
Period size: 94 Copynumber: 1.8 Consensus size: 92
67253977 TCGTGTGTGA
* * * *
67253987 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCTAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACATGACGAGAGCCAGTGTAAGA-CATGTC
67254052 TGGGACATGGCATCGGTATTGAGACGAGG
65 TGGGACAT-GCATCGGTATTGAGACGAGG
* *
67254081 GCTAGTGTAAGACATGTCTAGGACATGCAAT-GGCCTCGA-GACGTA-AGCCAGTGTATGACATG
1 GCTAGTGTAAGACATGTCTAGGACATGC-ATCGGCCAC-ATGACG-AGAGCCAGTGTAAGACATG
67254143 TCTGGGACATGCATC
63 TCTGGGACATGCATC
67254158 AGCTACGAAA
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
92 5 0.07
93 14 0.21
94 45 0.66
95 4 0.06
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (92 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACATGACGAGAGCCAGTGTAAGACATGTCT
GGGACATGCATCGGTATTGAGACGAGG
Found at i:67255081 original size:12 final size:12
Alignment explanation
Indices: 67255064--67255093 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
67255054 GATAATAAAC
67255064 ACACGGACAGAG
1 ACACGGACAGAG
*
67255076 ACACGGATAGAG
1 ACACGGACAGAG
67255088 ACACGG
1 ACACGG
67255094 CCATGTGTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.40, C:0.23, G:0.33, T:0.03
Consensus pattern (12 bp):
ACACGGACAGAG
Found at i:67259942 original size:30 final size:31
Alignment explanation
Indices: 67259862--67259944 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
67259852 TCAGTCTCGA
67259862 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
67259892 CATATCACTGGGCTGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
67259923 CATATCACT-GGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
67259945 ACTGTAAGCG
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
30 17 0.34
31 33 0.66
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:67260192 original size:25 final size:25
Alignment explanation
Indices: 67260164--67260233 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
67260154 CTCTTTTAAT
67260164 AACTGGGGCAAAGCCCTTTAT-GATA
1 AACTGGGGCAAAGCCCTTT-TCGATA
*
67260189 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
67260214 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
67260234 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
24 1 0.02
25 41 0.98
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:67261200 original size:27 final size:27
Alignment explanation
Indices: 67261139--67262158 Score: 955
Period size: 27 Copynumber: 37.7 Consensus size: 27
67261129 TTTCATCCTA
* * * *
67261139 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* **
67261166 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* ** * *
67261193 CAATGGTATTTCTATAATTTTTAGAAAGT
1 CAAGGGTATTTCGGTAA-TTTTACAAA-C
* ** ** *
67261222 CAAGGATATTTCTATAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
67261249 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAC
** *
67261276 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
*
67261303 C-AGTGGTATTTCGGTAATTTCACAAAC
1 CAAG-GGTATTTCGGTAATTTTACAAAC
67261330 C-AGTGGTATTTCGGTAATTTTACAAAC
1 CAAG-GGTATTTCGGTAATTTTACAAAC
* * *
67261357 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
67261384 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
67261411 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
67261438 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
67261465 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
67261492 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
67261519 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
67261546 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
67261573 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
67261600 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
67261627 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
67261654 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
67261681 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
67261708 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
67261735 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
67261762 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
67261789 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
67261816 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
67261843 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
67261870 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
67261897 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
67261924 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
67261951 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
67261978 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
67262005 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
67262032 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
67262059 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
67262086 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
67262113 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
67262140 TAGGGGTATTTTGGTAATT
1 CAAGGGTATTTCGGTAATT
67262159 CTATCCTACA
Statistics
Matches: 954, Mismatches: 35, Indels: 8
0.96 0.04 0.01
Matches are distributed among these distances:
26 2 0.00
27 922 0.97
28 15 0.02
29 15 0.02
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTACAAAC
Found at i:67262198 original size:27 final size:27
Alignment explanation
Indices: 67261250--67262186 Score: 1716
Period size: 27 Copynumber: 34.7 Consensus size: 27
67261240 TTTGTAAATC
67261250 AGGGGTATTTTGGTAATTTTACAAA-T
1 AGGGGTATTTTGGTAATTTTACAAACT
* * * *
67261276 TGAGGGTATTTCGGTAATTTCACAAACC
1 AG-GGGTATTTTGGTAATTTTACAAACT
* * * *
67261304 AGTGGTATTTCGGTAATTTCACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACT
* *
67261331 AGTGGTATTTCGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
67261358 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
67261385 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
67261412 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
67261439 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
67261466 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
67261493 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
67261520 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
67261547 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
67261574 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
67261601 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
67261628 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
67261655 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
67261682 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
67261709 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
67261736 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
67261763 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
67261790 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
67261817 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
67261844 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
67261871 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
67261898 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
67261925 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
67261952 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
67261979 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
67262006 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
67262033 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
67262060 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
67262087 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
67262114 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
* **
67262141 AGGGGTATTTTGGTAATTCTATCCTAC-
1 AGGGGTATTTTGGTAATTTTA-CAAACT
*
67262168 AGGGGTATTTTAGTAATTT
1 AGGGGTATTTTGGTAATTT
67262187 CATAATCAAG
Statistics
Matches: 893, Mismatches: 15, Indels: 5
0.98 0.02 0.01
Matches are distributed among these distances:
26 1 0.00
27 888 0.99
28 4 0.00
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:67262209 original size:26 final size:27
Alignment explanation
Indices: 67262180--67262238 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
67262170 GGGTATTTTA
67262180 GTAATTTCAT-AATCAAGGGTAAAATG
1 GTAATTTCATAAATCAAGGGTAAAATG
* **
67262206 GTAATTTTATAAATTGAGGGTAAAATG
1 GTAATTTCATAAATCAAGGGTAAAATG
67262233 GTAATT
1 GTAATT
67262239 CTACAAATCG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 9 0.31
27 20 0.69
ACGTcount: A:0.41, C:0.03, G:0.20, T:0.36
Consensus pattern (27 bp):
GTAATTTCATAAATCAAGGGTAAAATG
Found at i:67262232 original size:27 final size:27
Alignment explanation
Indices: 67262190--67262252 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
67262180 GTAATTTCAT
* * *
67262190 AATCAAGGGTAAAATGGTAATTTTATA
1 AATCGAGGGTAAAATGGTAATTCTACA
*
67262217 AATTGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTCTACA
67262244 AATCGAGGG
1 AATCGAGGG
67262253 CATTTCAGTA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.41, C:0.06, G:0.24, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTACA
Found at i:67265387 original size:29 final size:30
Alignment explanation
Indices: 67265350--67265415 Score: 82
Period size: 30 Copynumber: 2.3 Consensus size: 30
67265340 TAAAAATCGA
*
67265350 TTTT-CAAGG-CTAAGGGTAAAATAGTCAT
1 TTTTCCAAGGTCTAAGGGCAAAATAGTCAT
* *
67265378 TTTTCCAAGGTCTAGGGGCAAAATGGTCAT
1 TTTTCCAAGGTCTAAGGGCAAAATAGTCAT
*
67265408 TTTACCAA
1 TTTTCCAA
67265416 AGAAGTGAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 4 0.12
29 5 0.16
30 23 0.72
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (30 bp):
TTTTCCAAGGTCTAAGGGCAAAATAGTCAT
Found at i:67265904 original size:46 final size:46
Alignment explanation
Indices: 67265848--67265964 Score: 157
Period size: 46 Copynumber: 2.5 Consensus size: 46
67265838 GACGAGGGCT
*
67265848 AGTGTAAGACATGTCTGGGACATGCAACGGGCT-CGAGATG-TAAGCC
1 AGTGTAAGACATGTATGGGACATGCAAC-GGCTACGAGATGAT-AGCC
* * *
67265894 AGTGTAAGACATGTTTGGGACATGCATCGGCTACGAGATGATAGTC
1 AGTGTAAGACATGTATGGGACATGCAACGGCTACGAGATGATAGCC
67265940 AGTGTAAGACCATGTATGGGACATG
1 AGTGTAAGA-CATGTATGGGACATG
67265965 GAGTCGACTT
Statistics
Matches: 64, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
45 4 0.06
46 45 0.70
47 15 0.23
ACGTcount: A:0.29, C:0.16, G:0.32, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTATGGGACATGCAACGGCTACGAGATGATAGCC
Found at i:67274744 original size:21 final size:21
Alignment explanation
Indices: 67274719--67274783 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
67274709 CTTCTTCTTT
67274719 TTCTTTCTTATTTTCAGTAAC
1 TTCTTTCTTATTTTCAGTAAC
* *
67274740 TTC-TTC-T-TCTTCAGCAAC
1 TTCTTTCTTATTTTCAGTAAC
** *
67274758 AACTTTCTTATTTTCAGTAAA
1 TTCTTTCTTATTTTCAGTAAC
67274779 TTCTT
1 TTCTT
67274784 CTTCTTCAGC
Statistics
Matches: 32, Mismatches: 9, Indels: 6
0.68 0.19 0.13
Matches are distributed among these distances:
18 10 0.31
19 4 0.12
20 4 0.12
21 14 0.44
ACGTcount: A:0.22, C:0.22, G:0.05, T:0.52
Consensus pattern (21 bp):
TTCTTTCTTATTTTCAGTAAC
Found at i:67274764 original size:39 final size:39
Alignment explanation
Indices: 67274721--67274801 Score: 153
Period size: 39 Copynumber: 2.1 Consensus size: 39
67274711 TCTTCTTTTT
*
67274721 CTTTCTTATTTTCAGTAACTTCTTCTTCTTCAGCAACAA
1 CTTTCTTATTTTCAGTAAATTCTTCTTCTTCAGCAACAA
67274760 CTTTCTTATTTTCAGTAAATTCTTCTTCTTCAGCAACAA
1 CTTTCTTATTTTCAGTAAATTCTTCTTCTTCAGCAACAA
67274799 CTT
1 CTT
67274802 CCTCTTTTGC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.23, C:0.25, G:0.05, T:0.47
Consensus pattern (39 bp):
CTTTCTTATTTTCAGTAAATTCTTCTTCTTCAGCAACAA
Found at i:67274802 original size:18 final size:18
Alignment explanation
Indices: 67274742--67274807 Score: 53
Period size: 18 Copynumber: 3.5 Consensus size: 18
67274732 TCAGTAACTT
67274742 CTTCTTCTTCAGCAACAA
1 CTTCTTCTTCAGCAACAA
* * *
67274760 CTTTCTTATTTTCAGTAA-ATT
1 C-TTC-T-TCTTCAGCAACA-A
67274781 CTTCTTCTTCAGCAACAA
1 CTTCTTCTTCAGCAACAA
*
67274799 CTTCCTCTT
1 CTTCTTCTT
67274808 TTGCAGCAGT
Statistics
Matches: 36, Mismatches: 7, Indels: 10
0.68 0.13 0.19
Matches are distributed among these distances:
18 17 0.47
19 5 0.14
20 5 0.14
21 9 0.25
ACGTcount: A:0.23, C:0.29, G:0.05, T:0.44
Consensus pattern (18 bp):
CTTCTTCTTCAGCAACAA
Found at i:67285823 original size:34 final size:33
Alignment explanation
Indices: 67285766--67285836 Score: 97
Period size: 34 Copynumber: 2.1 Consensus size: 33
67285756 ATGCATTTCT
*
67285766 GATACTGTTCTAAAATGGGCTAAGCCCCACACC
1 GATACTGTTCGAAAATGGGCTAAGCCCCACACC
* * *
67285799 GATACTGTTACGAAATTGGGCTAAGTCCCACACT
1 GATACTGTT-CGAAAATGGGCTAAGCCCCACACC
67285833 GATA
1 GATA
67285837 TTTAGACTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
33 9 0.27
34 24 0.73
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (33 bp):
GATACTGTTCGAAAATGGGCTAAGCCCCACACC
Found at i:67289803 original size:39 final size:39
Alignment explanation
Indices: 67289729--67289855 Score: 125
Period size: 39 Copynumber: 3.3 Consensus size: 39
67289719 TTACCAACAC
* * * *
67289729 AAGCCTGCGGGAATTTAAACCCGG-TATAATACCAGCTCG
1 AAGCCTGCGGGACTTT-AGCCCGGATATAATTCCAGCACG
* *
67289768 AAGCCTGCGGGACTTTAGCCCGGACATATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATATAATTCCAGCACG
* * *
67289807 TAGCCTGC-GGACCTTAAGTCCGGATATAATTCCAGCAC-
1 AAGCCTGCGGGA-CTTTAGCCCGGATATAATTCCAGCACG
67289845 ATAGCCTGCGG
1 A-AGCCTGCGG
67289856 ACCCTAAGTC
Statistics
Matches: 72, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
38 9 0.12
39 62 0.86
40 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.21
Consensus pattern (39 bp):
AAGCCTGCGGGACTTTAGCCCGGATATAATTCCAGCACG
Found at i:67289856 original size:39 final size:39
Alignment explanation
Indices: 67289769--67289873 Score: 131
Period size: 39 Copynumber: 2.7 Consensus size: 39
67289759 ACCAGCTCGA
* * * * *
67289769 AGCCTGCGGGA-CTTTAGCCCGGACATATTTCCAGCACGT
1 AGCCTGC-GGACCTTAAGTCCGGATATAATTCCAGCACAT
67289808 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
* *
67289847 AGCCTGCGGACCCTAAGTCTGGATATA
1 AGCCTGCGGACCTTAAGTCCGGATATA
67289874 CATCAATATC
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
38 3 0.05
39 55 0.95
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.23
Consensus pattern (39 bp):
AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
Found at i:67297689 original size:15 final size:16
Alignment explanation
Indices: 67297669--67297711 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
67297659 GTGTCTCGTT
*
67297669 AAAACCTTATTAG-TA
1 AAAACCTTATGAGATA
*
67297684 AAAACCCTATGAGATA
1 AAAACCTTATGAGATA
*
67297700 AAAACCTAATGA
1 AAAACCTTATGA
67297712 AGGAAAAAGA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
15 11 0.48
16 12 0.52
ACGTcount: A:0.51, C:0.16, G:0.09, T:0.23
Consensus pattern (16 bp):
AAAACCTTATGAGATA
Found at i:67301981 original size:47 final size:49
Alignment explanation
Indices: 67301919--67302127 Score: 172
Period size: 47 Copynumber: 4.5 Consensus size: 49
67301909 GGTACCAATT
* * *
67301919 CCATATCCTAGACATGGTCTTACATTGGCTCAT-ATCTCAAGTC-GATG
1 CCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGTCTGATG
* * * *
67301966 CCATGTCCCAGACATGGTCTTACATTGACT-ATCATCTCGTAG-CCGATG
1 CCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTC-AAGTCTGATG
* * * * *
67302014 -CATGTCCTAGACAT-GTCTTACACTGGCTTA-CGTCTCGAGGCTGATG
1 CCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGTCTGATG
* * *
67302060 -CATATCCCAGA-AT-GTCTTACACTAGCTC-TCGTCTCAA-TGCTGATG
1 CCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGT-CTGATG
*
67302105 CCATGTCCCATACATGGTCTTAC
1 CCATGTCCCAGACATGGTCTTAC
67302128 GCTGATGCCA
Statistics
Matches: 134, Mismatches: 18, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
45 30 0.22
46 42 0.31
47 49 0.37
48 13 0.10
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.31
Consensus pattern (49 bp):
CCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGTCTGATG
Found at i:67302050 original size:46 final size:46
Alignment explanation
Indices: 67301928--67302127 Score: 158
Period size: 46 Copynumber: 4.3 Consensus size: 46
67301918 TCCATATCCT
* * * * *
67301928 AGACATGGTCTTACATTGGCTCATATCTCAAGTCGATGCCATGTCCC
1 AGACATGGTCTTACACTGGCTTACATCTCGAGCCGATG-CATGTCCC
* * *
67301975 AGACATGGTCTTACATTGAC-TATCATCTCGTAGCCGATGCATGTCCT
1 AGACATGGTCTTACACTGGCTTA-CATCTCG-AGCCGATGCATGTCCC
* * *
67302022 AGACAT-GTCTTACACTGGCTTACGTCTCGAGGCTGATGCATATCCC
1 AGACATGGTCTTACACTGGCTTACATCTCGA-GCCGATGCATGTCCC
* * * *
67302068 AGA-AT-GTCTTACACTAGCTCT-CGTCTCAATGCTGATGCCATGTCCC
1 AGACATGGTCTTACACTGGCT-TACATCTCGA-GCCGATG-CATGTCCC
*
67302114 ATACATGGTCTTAC
1 AGACATGGTCTTAC
67302128 GCTGATGCCA
Statistics
Matches: 128, Mismatches: 17, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
45 30 0.23
46 43 0.34
47 41 0.32
48 14 0.11
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (46 bp):
AGACATGGTCTTACACTGGCTTACATCTCGAGCCGATGCATGTCCC
Found at i:67302134 original size:30 final size:30
Alignment explanation
Indices: 67302098--67302157 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
67302088 TCGTCTCAAT
*
67302098 GCTGATGCCATGTCCCATACATGGTCTTAC
1 GCTGATGCCATGTCCCAGACATGGTCTTAC
67302128 GCTGATGCCATGTCCCAGACATGGTCTTAC
1 GCTGATGCCATGTCCCAGACATGGTCTTAC
67302158 ACTGGCTCTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.20, C:0.30, G:0.22, T:0.28
Consensus pattern (30 bp):
GCTGATGCCATGTCCCAGACATGGTCTTAC
Found at i:67310940 original size:46 final size:47
Alignment explanation
Indices: 67310838--67311053 Score: 176
Period size: 46 Copynumber: 4.6 Consensus size: 47
67310828 GTAAGGTGCT
* * ** * *
67310838 GATGTCATGTCCTAGACATGGTCTTATGCTGGCTCAT-ATCTC-AAGTT
1 GATGCCATGTCCCAGACA-GGTCTTACACTGACTC-TCATCTCGAAGTC
* *
67310885 GATGCCATGTCCCAGACAGGTCTTACACTGACTATCATCTCGCAGTC
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATCTCGAAGTC
* * *
67310932 GATG-CATGTCCCAGACATGTCTTACACT-AGCTCTCGTCTC-AATGCC
1 GATGCCATGTCCCAGACAGGTCTTACACTGA-CTCTCATCTCGAA-GTC
* * ** *
67310978 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGTT
1 GATGCCATGTCCCAGACA-GGTCTTACACTGACTCTCAT-CTCGAAGTC
*
67311026 GATG-CATGTCCCAGACATGTCTTACACT
1 GATGCCATGTCCCAGACAGGTCTTACACT
67311054 AGCCCACAAA
Statistics
Matches: 138, Mismatches: 22, Indels: 19
0.77 0.12 0.11
Matches are distributed among these distances:
45 3 0.02
46 64 0.46
47 49 0.36
48 21 0.15
49 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (47 bp):
GATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATCTCGAAGTC
Found at i:67311038 original size:94 final size:93
Alignment explanation
Indices: 67310885--67311056 Score: 265
Period size: 94 Copynumber: 1.8 Consensus size: 93
67310875 ATCTCAAGTT
*
67310885 GATGCCATGTCCCAGACAGGTCTTACACTGACTATCATCTCGCAGTCGATGCATGTCCCAGACAT
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTATCATATCGCAGTCGATGCATGTCCCAGACAT
67310950 GTCTTACACTAGCTCTCGTCTCAATGCC
66 GTCTTACACTAGCTCTCGTCTCAATGCC
* * ** *
67310978 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGTTGATGCATGTCCCAGAC
1 GATGCCATGTCCCAGACA-GGTCTTACACTGACTATCAT-ATCGCAGTCGATGCATGTCCCAGAC
67311042 ATGTCTTACACTAGC
64 ATGTCTTACACTAGC
67311057 CCACAAACAA
Statistics
Matches: 71, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
93 18 0.25
94 52 0.73
95 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (93 bp):
GATGCCATGTCCCAGACAGGTCTTACACTGACTATCATATCGCAGTCGATGCATGTCCCAGACAT
GTCTTACACTAGCTCTCGTCTCAATGCC
Found at i:67313753 original size:30 final size:30
Alignment explanation
Indices: 67313653--67313775 Score: 94
Period size: 30 Copynumber: 4.1 Consensus size: 30
67313643 AATTTATTTT
* *
67313653 TTAA-GGTTTAGGGGTTTTAA-AAAATAAA
1 TTAAGGGTTTAGAGGTTTTAAGAAAATTAA
* * *
67313681 TT-AGAGTTTA-A-ATTTTAAAAAAATTAA
1 TTAAGGGTTTAGAGGTTTTAAGAAAATTAA
* * *
67313708 TTAAATTAGGTTTTAGGGGTTTTAAGTAAATTAA
1 TT--A--AGGGTTTAGAGGTTTTAAGAAAATTAA
*
67313742 TTAAGGGTTTAGAGTTTTTAAGAAAATTAA
1 TTAAGGGTTTAGAGGTTTTAAGAAAATTAA
67313772 TTAA
1 TTAA
67313776 ATTAGGGTTT
Statistics
Matches: 72, Mismatches: 14, Indels: 16
0.71 0.14 0.16
Matches are distributed among these distances:
26 6 0.08
27 10 0.14
28 7 0.10
30 27 0.38
32 7 0.10
34 15 0.21
ACGTcount: A:0.42, C:0.00, G:0.17, T:0.41
Consensus pattern (30 bp):
TTAAGGGTTTAGAGGTTTTAAGAAAATTAA
Found at i:67313777 original size:64 final size:60
Alignment explanation
Indices: 67313657--67313786 Score: 170
Period size: 64 Copynumber: 2.1 Consensus size: 60
67313647 TATTTTTTAA
67313657 GGTTTAGGGGTTTTAAAAAATAAATTAGAGTTTAAATTTTAAAAAAATTAATTAAATTAG
1 GGTTTAGGGGTTTTAAAAAATAAATTAGAGTTTAAATTTTAAAAAAATTAATTAAATTAG
* * * * * *
67313717 GTTTTAGGGGTTTTAAGTAAATTAATTAAGGGTTTAGAGTTTTTAAGAAAATTAATTAAATTAG
1 GGTTTAGGGGTTTTAA-AAAATAAATT-AGAGTTTA-A-ATTTTAAAAAAATTAATTAAATTAG
67313781 GGTTTA
1 GGTTTA
67313787 AGATTTTTTT
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
60 15 0.25
61 8 0.14
62 7 0.12
63 1 0.02
64 28 0.47
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (60 bp):
GGTTTAGGGGTTTTAAAAAATAAATTAGAGTTTAAATTTTAAAAAAATTAATTAAATTAG
Found at i:67313794 original size:34 final size:34
Alignment explanation
Indices: 67313677--67313794 Score: 115
Period size: 34 Copynumber: 3.6 Consensus size: 34
67313667 TTTTAAAAAA
* *
67313677 TAAATTAGAGTTTAA-A-TTTTAAAAAAATTAAT
1 TAAATTAGGGTTTAAGATTTTTAAGAAAATTAAT
* * ** *
67313709 TAAATTAGGTTTTAGGGGTTTTAAGTAAATTAAT
1 TAAATTAGGGTTTAAGATTTTTAAGAAAATTAAT
67313743 T--A--AGGGTTT-AGAGTTTTTAAGAAAATTAAT
1 TAAATTAGGGTTTAAGA-TTTTTAAGAAAATTAAT
67313773 TAAATTAGGGTTTAAGATTTTT
1 TAAATTAGGGTTTAAGATTTTT
67313795 TTAAAATAAT
Statistics
Matches: 67, Mismatches: 11, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
29 1 0.01
30 22 0.33
32 14 0.21
34 27 0.40
35 3 0.04
ACGTcount: A:0.41, C:0.00, G:0.16, T:0.43
Consensus pattern (34 bp):
TAAATTAGGGTTTAAGATTTTTAAGAAAATTAAT
Found at i:67314073 original size:122 final size:125
Alignment explanation
Indices: 67313847--67314348 Score: 620
Period size: 126 Copynumber: 4.0 Consensus size: 125
67313837 TTTAGGGTTG
* * *
67313847 AGTTT-TGAAAAAATTATATTGAGAAGACGATTTTGAAAAAATAGTGATAAAAATGCTTCAAGCA
1 AGTTTCTGAAAAAATAAT-TTGAGAAGACGATTCTGAAAAAATAGTGTTAAAAATGCTTCAAGCA
* **
67313911 GGATGCACTGTCAGCAAAAGTACTG-AAAAAGATCCCACAT-GACGCTCTTTTAATACAGT
65 GGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACATGGACGCTCTTTTTCTACAGT
* *
67313970 AGTTTCTGAAAAAATAA-TTGAGAAGACGATTCTGAAAAAATAATGTTAAAAATGCTTCAAGTAG
1 AGTTTCTGAAAAAATAATTTGAGAAGACGATTCTGAAAAAATAGTGTTAAAAATGCTTCAAGCAG
* * *
67314034 TATGCACTGTCAGCAAAAGTACTGAAAAAA-CTCCTACATGGACGCTCTTTTTCTACGGT
66 GATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACATGGACGCTCTTTTTCTACAGT
* * * * * * *
67314093 AGTTCCTAAAAAAATAATTTTGAGAAGATGGTTCTGGAAAAATAGCGTAAAAAATGCTTCAAGCA
1 AGTTTCTGAAAAAATAA-TTTGAGAAGACGATTCTGAAAAAATAGTGTTAAAAATGCTTCAAGCA
** * * *
67314158 TAATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGATGCTCTTTTTCTACAAT
65 GGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACATGGACGCTCTTTTTCTACAGT
* * ** *
67314219 AGTTTCTGAAAAACTAACTTTGAGAAGAC-AGTTCTGAAGAGGTAGTGTTAAAAATGCTTCAAGG
1 AGTTTCTGAAAAAATAA-TTTGAGAAGACGA-TTCTGAAAAAATAGTGTTAAAAATGCTTCAAGC
* * * * * *
67314283 AGGATGCATTGTCAACAAAATTACTGAAAAAAGCTCCCACGTGGATGCTTTTTTTCTACAGT
64 AGGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACATGGACGCTCTTTTTCTACAGT
67314345 AGTT
1 AGTT
67314349 CCTGCTTGGC
Statistics
Matches: 325, Mismatches: 47, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
122 73 0.22
123 41 0.13
124 10 0.03
125 68 0.21
126 133 0.41
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.28
Consensus pattern (125 bp):
AGTTTCTGAAAAAATAATTTGAGAAGACGATTCTGAAAAAATAGTGTTAAAAATGCTTCAAGCAG
GATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACATGGACGCTCTTTTTCTACAGT
Found at i:67318281 original size:16 final size:15
Alignment explanation
Indices: 67318257--67318286 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
67318247 AACAATTTTA
67318257 TTACAAATTTCACTC
1 TTACAAATTTCACTC
67318272 TTACATAATTTCACT
1 TTACA-AATTTCACT
67318287 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:67318562 original size:50 final size:50
Alignment explanation
Indices: 67318486--67318674 Score: 202
Period size: 50 Copynumber: 3.8 Consensus size: 50
67318476 AACCGAAGCT
* * * *
67318486 ATCTGGTACGCATAGTAGCCTACACTTAGTACTACACACATGACCTAACC
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * * *
67318536 ATCTGATACACATAGTGGCCTGCACTTAATACTACACATGTGACCTAACT
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
** *
67318586 ATCT-AGTACATGTAGTAGCTTGCACTTAGTACTACACACGTGACCTAAAACC
1 ATCTGA-TACACATAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACC
* * * *
67318638 ATCTTA-ACACATAGTAGCCTGCCCATAGTTCTACACA
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACA
67318675 TGTGTTCTCA
Statistics
Matches: 114, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
49 1 0.01
50 80 0.70
51 25 0.22
52 7 0.06
53 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (50 bp):
ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
Found at i:67319886 original size:56 final size:55
Alignment explanation
Indices: 67319748--67319917 Score: 254
Period size: 56 Copynumber: 3.1 Consensus size: 55
67319738 TAAAATTTCT
*
67319748 AAATGAAATTTTCACATAATCATGCAATCATGCCATAGACCTTAAAATGAT-AAAA
1 AAAT-AAATTTTCACACAATCATGCAATCATGCCATAGACCTTAAAATGATAAAAA
* * *
67319803 AAATAAATTTTCACACAATCATGCAATCATTTCC-TAAACCTTAAAAGGATAAAAA
1 AAATAAATTTTCACACAATCATGCAATCA-TGCCATAGACCTTAAAATGATAAAAA
*
67319858 TAAATAAATTTTCACACAATCATTCAATCATGCCATAGACCTTAAAATGATAAAAA
1 -AAATAAATTTTCACACAATCATGCAATCATGCCATAGACCTTAAAATGATAAAAA
67319914 AAAT
1 AAAT
67319918 TCTACTTCGG
Statistics
Matches: 103, Mismatches: 8, Indels: 8
0.87 0.07 0.07
Matches are distributed among these distances:
54 38 0.37
55 18 0.17
56 47 0.46
ACGTcount: A:0.49, C:0.17, G:0.06, T:0.28
Consensus pattern (55 bp):
AAATAAATTTTCACACAATCATGCAATCATGCCATAGACCTTAAAATGATAAAAA
Found at i:67325000 original size:605 final size:604
Alignment explanation
Indices: 67323799--67325000 Score: 1904
Period size: 605 Copynumber: 2.0 Consensus size: 604
67323789 CTCATTGCTG
* * * *
67323799 GAACAGAGTCGAAAATTCTTCTTTGACAATGCATGTCTGGACGCATTCATTCAATTAAAGACGTA
1 GAACAGAATCGAAAATTCTTCTATGACAATGCATGTCTGAACGCATTCATTCAATTAAAGACGCA
* * * *
67323864 AGTAGTAAATGCACTCATTGTCGTTGCATCAGACTAGTTTCAACCTTTTGAAGTTATGTGCGATG
66 ACTAGTAAATGCACCCATTGTCATTGCATCAGACTAGTCTCAACCTTTTGAAGTTATGTGCGATG
*
67323929 CAAGCGACTTTGCTATGGGTGTTGTTCTAGGACAACGCAAGGGAAAAATATTTCACGCCATCTAT
131 CAAGCGACTTTGCTATGGGTGCTGTTCTAGGACAACGCAAGGGAAAAATATTTCACGCCATCTAT
* *
67323994 TATGCGAGCAAAACTCTTACAAAGGCTCAACTGAACTATACCACTACAGAGAAAGAATTGTTGGC
196 AATGCGAGCAAAACTCTTACAAAGGCTCAACTCAACTATACCACTACAGAGAAAGAATTGTTGGC
* * * * *
67324059 TATAGTCTTTGCTTTCAAGAAGTTTCACCTTATCTTGTCGGTGCAAAGGTTGTAGTATTTACTAA
261 TATAGTCTTTGCTTTCAAAAAGTTTCACCTGATCTTGTCAGCGCAAAGGTTCTAGTATTTACTAA
* * * * *
67324124 TCACTCGGCGTTGAGATATCTTTTTGCGAAGAAGGATGCAAAACCAAGACTGATATGTTGGATCA
326 TCACTCGGCGTTGAGATATCTTTTTACGAAGAAGGATACAAAACCAAGACTAATACGTTAGATCA
* *
67324189 TACTGTTGGAAGAATTAGGCATCGAGATAAAAGACCATAAGGGTTCAGAGAATCAAGTTACAGAC
391 TACTGTTGGAAGAATTAGGCATCGAGATAAAAGACCATAAGGGTTCAAAGAATCAAGTTACAAAC
* * * ** * *
67324254 CATCTGTCACGATTGGAAGTTGGCAGCGAAGATGGAAATGTATTTCAAATTGTTGACGCATTCCC
456 CATATGTCACAATTGGAAGTTGGCAACGAAGATGGAAACATACTTCAAATTGTCGACGCATTCCC
* *
67324319 AGATGAGAAGTTATTTACTGTAGATGCAACCCCTTGGTATGTAGATTTGGTTAATTATCCAGTGT
521 AGATGAGAAGTTATTTACTGTAGATGCAACCCCTTAGTATGTAGATTTGGTTAATTATCCAGTAT
67324384 GTGGAAAACTCCATTCCTA
586 GTGGAAAACTCCATTCCTA
** * * *
67324403 GAACAGAATCGAAAATTCTTCTATGATGATGCATGTTTGAAGGCATTCATTCAATTAAAGATGCA
1 GAACAGAATCGAAAATTCTTCTATGACAATGCATGTCTGAACGCATTCATTCAATTAAAGACGCA
*
67324468 ACTAGTAACTGCACCCATTGTCATTGCA-CTAGACTAGTCTCAACCTTTTGAAGTTATGTGCGAT
66 ACTAGTAAATGCACCCATTGTCATTGCATC-AGACTAGTCTCAACCTTTTGAAGTTATGTGCGAT
67324532 GCAAGCGACTTTGCTATGGGTGCTGTTCTAGGACAACGCAAGGGAAAAATATTTCACGCCATCTA
130 GCAAGCGACTTTGCTATGGGTGCTGTTCTAGGACAACGCAAGGGAAAAATATTTCACGCCATCTA
** *
67324597 TAATGTTAGCAAAACTCTTACAAAGGCTCAACTCAACTATACCACTACTGAGAAAGAATTGTTGG
195 TAATGCGAGCAAAACTCTTACAAAGGCTCAACTCAACTATACCACTACAGAGAAAGAATTGTTGG
*
67324662 CTATAGTCTTTGCTTTCAAAAAGTTTCATTCTGATCTTGTCAGCGCAAAGGTTACT-GTATTTAC
260 CTATAGTCTTTGCTTTCAAAAAGTTTCA-CCTGATCTTGTCAGCGCAAAGGTT-CTAGTATTTAC
67324726 TAATCACTCGGCGTTGAGATATCTTTTTACGAAGAAGGATACAAAACCAAGACTAATACGTTAGA
323 TAATCACTCGGCGTTGAGATATCTTTTTACGAAGAAGGATACAAAACCAAGACTAATACGTTAGA
* * * * *
67324791 TCTTACTGTTGGAAGAATTCGGCATCGAGATAAAAGACCGTAAGGGTTCAAATAATCAAGTTGCA
388 TCATACTGTTGGAAGAATTAGGCATCGAGATAAAAGACCATAAGGGTTCAAAGAATCAAGTTACA
* *
67324856 AACCATATGTCTCAATTGGAAGTTGGCAACGAAGATGGAAACATACTTCCAATTGTCGACGCATT
453 AACCATATGTCACAATTGGAAGTTGGCAACGAAGATGGAAACATACTTCAAATTGTCGACGCATT
* *
67324921 CCCAGATGAGAAGTTATTTACTGTAGATGCAACCCTTTAGTATGTAGATTTGGTTAATTATCTAG
518 CCCAGATGAGAAGTTATTTACTGTAGATGCAACCCCTTAGTATGTAGATTTGGTTAATTATCCAG
67324986 TATGTGGAAAACTCC
583 TATGTGGAAAACTCC
67325001 CATTGGGTGT
Statistics
Matches: 544, Mismatches: 51, Indels: 5
0.91 0.09 0.01
Matches are distributed among these distances:
603 1 0.00
604 264 0.49
605 278 0.51
606 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (604 bp):
GAACAGAATCGAAAATTCTTCTATGACAATGCATGTCTGAACGCATTCATTCAATTAAAGACGCA
ACTAGTAAATGCACCCATTGTCATTGCATCAGACTAGTCTCAACCTTTTGAAGTTATGTGCGATG
CAAGCGACTTTGCTATGGGTGCTGTTCTAGGACAACGCAAGGGAAAAATATTTCACGCCATCTAT
AATGCGAGCAAAACTCTTACAAAGGCTCAACTCAACTATACCACTACAGAGAAAGAATTGTTGGC
TATAGTCTTTGCTTTCAAAAAGTTTCACCTGATCTTGTCAGCGCAAAGGTTCTAGTATTTACTAA
TCACTCGGCGTTGAGATATCTTTTTACGAAGAAGGATACAAAACCAAGACTAATACGTTAGATCA
TACTGTTGGAAGAATTAGGCATCGAGATAAAAGACCATAAGGGTTCAAAGAATCAAGTTACAAAC
CATATGTCACAATTGGAAGTTGGCAACGAAGATGGAAACATACTTCAAATTGTCGACGCATTCCC
AGATGAGAAGTTATTTACTGTAGATGCAACCCCTTAGTATGTAGATTTGGTTAATTATCCAGTAT
GTGGAAAACTCCATTCCTA
Done.