Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 205 of 322
Found at i:67326279 original size:11 final size:11
Alignment explanation
Indices: 67326263--67326288 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
67326253 TTATTATGTA
67326263 ATTTTATTTTT
1 ATTTTATTTTT
67326274 ATTTTATTTTT
1 ATTTTATTTTT
67326285 ATTT
1 ATTT
67326289 CTGTTCAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (11 bp):
ATTTTATTTTT
Found at i:67352306 original size:80 final size:79
Alignment explanation
Indices: 67352150--67352324 Score: 278
Period size: 80 Copynumber: 2.2 Consensus size: 79
67352140 ATGATAACCA
* *
67352150 GGCTAAGTCTCGAAGGCATTTGCGCTAGTGACTAGTTCCGGCTAAGTCCCGAAGGCATTTGTGCG
1 GGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGCTAAGTCCCGAAGGCATTTGTGCG
67352215 AGTTACCATATCCG
66 AGTTACCATATCCG
* * *
67352229 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGTTCCGGGCTAAGTCCCGAAGGCATTTGTGT
1 GGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCC-GGCTAAGTCCCGAAGGCATTTGTGC
*
67352294 GAGTTACTATATCCG
65 GAGTTACCATATCCG
*
67352309 GGCTATGTCCCGAAGG
1 GGCTAAGTCCCGAAGG
67352325 TATTCGAGTG
Statistics
Matches: 88, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
79 35 0.40
80 53 0.60
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (79 bp):
GGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGCTAAGTCCCGAAGGCATTTGTGCG
AGTTACCATATCCG
Found at i:67352336 original size:40 final size:40
Alignment explanation
Indices: 67352150--67352363 Score: 249
Period size: 40 Copynumber: 5.4 Consensus size: 40
67352140 ATGATAACCA
* * * *
67352150 GGCTAAGTCTCGAAGGCATTTGCGCTAGTGACTAGT-TCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCG
*
67352189 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
67352229 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGT-TCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCG
*
67352269 GGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* * * * *
67352309 GGCTATGTCCCGAAGGTATTCGAGTGAG-TAGCTATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCG
* *
67352348 GGTTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
67352364 TACTTGGCTT
Statistics
Matches: 156, Mismatches: 14, Indels: 10
0.87 0.08 0.06
Matches are distributed among these distances:
38 1 0.01
39 48 0.31
40 106 0.68
41 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:67360377 original size:40 final size:40
Alignment explanation
Indices: 67360322--67360497 Score: 214
Period size: 40 Copynumber: 4.4 Consensus size: 40
67360312 ATGATAACCA
* * *
67360322 GGCTAAGTCCCGAAGGCATTTGCACTAGTGACTAGT-TTCG
1 GGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTA-TATTCG
* * *
67360362 GGCTATGTCCCGAAGGCATTT-CTGCGAGTTACCATATCCG
1 GGCTAAGTCCCGAAGGCATTTGC-GCGAGTTACTATATTCG
* *
67360402 GGATAAGTCCCGAAGGCATTTGTGCGAGTTACTAGT-TTCG
1 GGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTA-TATTCG
*
67360442 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATTCG
1 GGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATATTCG
*
67360482 GGCTATGTCCCGAAGG
1 GGCTAAGTCCCGAAGG
67360498 TATTCGAGTG
Statistics
Matches: 118, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 3 0.03
40 114 0.97
41 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATATTCG
Found at i:67360458 original size:80 final size:80
Alignment explanation
Indices: 67360325--67360497 Score: 256
Period size: 80 Copynumber: 2.2 Consensus size: 80
67360315 ATAACCAGGC
* *
67360325 TAAGTCCCGAAGGCATTTGCACTAGTGACTAGTTTCGGGCTATGTCCCGAAGGCATTTCTGCGAG
1 TAAGTCCCGAAGGCATTTGCACGAGTGACTAGTTTCGGGCTAAGTCCCGAAGGCATTTCTGCGAG
67360390 TTACCATATCCGGGA
66 TTACCATATCCGGGA
** * *
67360405 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAGTTTCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCATTTGCACGAGTGACTAGTTTCGGGCTAAGTCCCGAAGGCATTTCTGCGAG
* * *
67360470 TTACTATATTCGGGC
66 TTACCATATCCGGGA
*
67360485 TATGTCCCGAAGG
1 TAAGTCCCGAAGG
67360498 TATTCGAGTG
Statistics
Matches: 83, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
80 83 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (80 bp):
TAAGTCCCGAAGGCATTTGCACGAGTGACTAGTTTCGGGCTAAGTCCCGAAGGCATTTCTGCGAG
TTACCATATCCGGGA
Found at i:67360517 original size:40 final size:40
Alignment explanation
Indices: 67360322--67360518 Score: 179
Period size: 40 Copynumber: 4.9 Consensus size: 40
67360312 ATGATAACCA
* * *
67360322 GGCTAAGTCCCGAAGGCATTTGCA-CTAGTGACTAGT-TTCG
1 GGCTAAGTCCCGAAGGCATTCG-AGCGAGTTACTA-TATTCG
* * * *
67360362 GGCTATGTCCCGAAGGCATTTC-TGCGAGTTACCATATCCG
1 GGCTAAGTCCCGAAGGCA-TTCGAGCGAGTTACTATATTCG
* * *
67360402 GGATAAGTCCCGAAGGCATTTGTGCGAGTTACTAGT-TTCG
1 GGCTAAGTCCCGAAGGCATTCGAGCGAGTTACTA-TATTCG
* *
67360442 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATTCG
1 GGCTAAGTCCCGAAGGCATTCGAGCGAGTTACTATATTCG
* * *
67360482 GGCTATGTCCCGAAGGTATTCGAGTGAG-TAGCTATAT
1 GGCTAAGTCCCGAAGGCATTCGAGCGAGTTA-CTATAT
67360519 CCGGTTAAAT
Statistics
Matches: 132, Mismatches: 18, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
39 6 0.05
40 123 0.93
41 3 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTCGAGCGAGTTACTATATTCG
Found at i:67362571 original size:14 final size:14
Alignment explanation
Indices: 67362552--67362590 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
67362542 TGAAACTATG
67362552 TTGCATTATTCCTA
1 TTGCATTATTCCTA
67362566 TTGCATTATTCCTA
1 TTGCATTATTCCTA
*
67362580 TTGCCTTATTC
1 TTGCATTATTC
67362591 AAAAGAACTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.18, C:0.23, G:0.08, T:0.51
Consensus pattern (14 bp):
TTGCATTATTCCTA
Found at i:67364805 original size:19 final size:19
Alignment explanation
Indices: 67364781--67364822 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
67364771 AAAGGCTATG
*
67364781 TGTTATACAGATGAATTAC
1 TGTTATACAGATGAAGTAC
**
67364800 TGTTATATGGATGAAGTAC
1 TGTTATACAGATGAAGTAC
67364819 TGTT
1 TGTT
67364823 TAAATGGATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.40
Consensus pattern (19 bp):
TGTTATACAGATGAAGTAC
Found at i:67364831 original size:20 final size:19
Alignment explanation
Indices: 67364790--67364833 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
67364780 GTGTTATACA
* *
67364790 GATGAATTACTGTTATATG
1 GATGAAGTACTGTTAAATG
67364809 GATGAAGTACTGTTTAAATG
1 GATGAAGTACTG-TTAAATG
67364829 GATGA
1 GATGA
67364834 GTTACAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 11 0.50
20 11 0.50
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (19 bp):
GATGAAGTACTGTTAAATG
Found at i:67366536 original size:15 final size:15
Alignment explanation
Indices: 67366516--67366546 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
67366506 AGTTCAGACC
67366516 ACTCAATTTCTCATG
1 ACTCAATTTCTCATG
67366531 ACTCAATTTCTCATG
1 ACTCAATTTCTCATG
67366546 A
1 A
67366547 GGTCATGCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.29, C:0.26, G:0.06, T:0.39
Consensus pattern (15 bp):
ACTCAATTTCTCATG
Found at i:67371289 original size:33 final size:33
Alignment explanation
Indices: 67371236--67371298 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
67371226 ATCACATTCT
*
67371236 TGCTACTAGCCCCAATTCCAACATTTTTCTGCC
1 TGCTACTAGCCCCAACTCCAACATTTTTCTGCC
* *
67371269 TGCTGCTAGCCCTAACTCCAACATTTTTCT
1 TGCTACTAGCCCCAACTCCAACATTTTTCT
67371299 ATGGTCTTCC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.21, C:0.35, G:0.10, T:0.35
Consensus pattern (33 bp):
TGCTACTAGCCCCAACTCCAACATTTTTCTGCC
Found at i:67371367 original size:13 final size:14
Alignment explanation
Indices: 67371337--67371367 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
67371327 TAGCCTTGTG
67371337 CTTTGAAATTTTTA
1 CTTTGAAATTTTTA
67371351 CTTTGAAATTTTT-
1 CTTTGAAATTTTTA
67371364 CTTT
1 CTTT
67371368 CTCGTTCATC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.24
14 13 0.76
ACGTcount: A:0.23, C:0.10, G:0.06, T:0.61
Consensus pattern (14 bp):
CTTTGAAATTTTTA
Found at i:67377783 original size:36 final size:36
Alignment explanation
Indices: 67377736--67377808 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
67377726 CTCTATCTTA
*
67377736 CCCTAGTATTCTATTCCATTGTTTTGATAGAAAAGT
1 CCCTAGTATTCTATTCCATTGTATTGATAGAAAAGT
*
67377772 CCCTAGTATTCTATTCTATTGTATTGATAGAAAAGT
1 CCCTAGTATTCTATTCCATTGTATTGATAGAAAAGT
67377808 C
1 C
67377809 AACGGTAAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (36 bp):
CCCTAGTATTCTATTCCATTGTATTGATAGAAAAGT
Found at i:67381649 original size:23 final size:24
Alignment explanation
Indices: 67381599--67381653 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
67381589 TCAGCTCGCA
**
67381599 AGAGCTTACTGTTCTCAGTTCGTC
1 AGAGCTTACTGTTCTCAGTTAATC
67381623 AGAGCTTACTGTT-TCAGCTTAAT-
1 AGAGCTTACTGTTCTCAG-TTAATC
67381646 AGAGCTTA
1 AGAGCTTA
67381654 TAGTCCATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 12 0.43
24 16 0.57
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (24 bp):
AGAGCTTACTGTTCTCAGTTAATC
Found at i:67381863 original size:19 final size:19
Alignment explanation
Indices: 67381824--67381886 Score: 76
Period size: 20 Copynumber: 3.3 Consensus size: 19
67381814 AAAAGCTATG
*
67381824 TGTTATATGGA-GAATTAC
1 TGTTATATGGATGAAGTAC
67381842 TGTTATATGGATGAAGTAC
1 TGTTATATGGATGAAGTAC
*
67381861 TGTTTAAATGGATG-AGTTAC
1 TG-TTATATGGATGAAG-TAC
67381881 TGTTAT
1 TGTTAT
67381887 CGAATGATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
18 11 0.28
19 13 0.33
20 15 0.38
ACGTcount: A:0.30, C:0.05, G:0.24, T:0.41
Consensus pattern (19 bp):
TGTTATATGGATGAAGTAC
Found at i:67386944 original size:19 final size:21
Alignment explanation
Indices: 67386904--67386942 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
67386894 TTTTTCACTG
67386904 AAATATTAAGAATATTATTTA
1 AAATATTAAGAATATTATTTA
67386925 AAAT-TTAA-AATACTTATT
1 AAATATTAAGAATA-TTATT
67386943 AATGTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.24
20 9 0.53
21 4 0.24
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.44
Consensus pattern (21 bp):
AAATATTAAGAATATTATTTA
Found at i:67394262 original size:55 final size:55
Alignment explanation
Indices: 67394198--67394309 Score: 215
Period size: 55 Copynumber: 2.0 Consensus size: 55
67394188 AATAGATTGC
*
67394198 ATGAATACTATCTACAGTAAATGTATTTTCTCAAGATGACTAAGAAATTAATTTA
1 ATGAATACTATCCACAGTAAATGTATTTTCTCAAGATGACTAAGAAATTAATTTA
67394253 ATGAATACTATCCACAGTAAATGTATTTTCTCAAGATGACTAAGAAATTAATTTA
1 ATGAATACTATCCACAGTAAATGTATTTTCTCAAGATGACTAAGAAATTAATTTA
67394308 AT
1 AT
67394310 TCCTTTGGGG
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.42, C:0.12, G:0.11, T:0.36
Consensus pattern (55 bp):
ATGAATACTATCCACAGTAAATGTATTTTCTCAAGATGACTAAGAAATTAATTTA
Found at i:67394306 original size:26 final size:26
Alignment explanation
Indices: 67394222--67394306 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
67394212 CAGTAAATGT
67394222 ATTTTCTCAAGATGACTAAGAAATTA
1 ATTTTCTCAAGATGACTAAGAAATTA
** * * *
67394248 ATTTAATGAATACT-ATCCACAGTAAATGT-
1 ATTTTCTCAAGA-TGA-CTA-AG-AAAT-TA
67394277 ATTTTCTCAAGATGACTAAGAAATTA
1 ATTTTCTCAAGATGACTAAGAAATTA
67394303 ATTT
1 ATTT
67394307 AATTCCTTTG
Statistics
Matches: 42, Mismatches: 10, Indels: 14
0.64 0.15 0.21
Matches are distributed among these distances:
25 1 0.02
26 17 0.40
27 5 0.12
28 5 0.12
29 13 0.31
30 1 0.02
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.36
Consensus pattern (26 bp):
ATTTTCTCAAGATGACTAAGAAATTA
Found at i:67399401 original size:41 final size:41
Alignment explanation
Indices: 67399354--67399566 Score: 190
Period size: 41 Copynumber: 5.1 Consensus size: 41
67399344 GCTGTTGAAC
67399354 TTGAAAAAAATGAAGAAGAAAGGGACAACAATGGTGTGACT
1 TTGAAAAAAATGAAGAAGAAAGGGACAACAATGGTGTGACT
* * * * *
67399395 TTGAAAAGAA-CAA-AAG-AAGGGTGCAAAACAGGGCTGCTGAAC-
1 TTGAAAAAAATGAAGAAGAAAGGG-ACAACA-ATGG-TG-TG-ACT
67399437 TTGAAAAAAATGAAGAAGAAAGGGACAACAATGGTGTGACT
1 TTGAAAAAAATGAAGAAGAAAGGGACAACAATGGTGTGACT
* * * * *
67399478 TTGAAAAGAA-CAA-AAG-AAGGGTGCAAAACAGGGCTGCTGAAC-
1 TTGAAAAAAATGAAGAAGAAAGGG-ACAACA-ATGG-TG-TG-ACT
67399520 TTGAAAAAAATGAAGAAGAAAGGGACAACAATGGTGTGACT
1 TTGAAAAAAATGAAGAAGAAAGGGACAACAATGGTGTGACT
67399561 TTGAAA
1 TTGAAA
67399567 GGGACAAAAG
Statistics
Matches: 134, Mismatches: 20, Indels: 36
0.71 0.11 0.19
Matches are distributed among these distances:
38 10 0.07
39 14 0.10
40 14 0.10
41 32 0.24
42 26 0.19
43 14 0.10
44 14 0.10
45 10 0.07
ACGTcount: A:0.47, C:0.10, G:0.27, T:0.15
Consensus pattern (41 bp):
TTGAAAAAAATGAAGAAGAAAGGGACAACAATGGTGTGACT
Found at i:67399441 original size:42 final size:42
Alignment explanation
Indices: 67399395--67399526 Score: 148
Period size: 42 Copynumber: 3.2 Consensus size: 42
67399385 TGGTGTGACT
67399395 TTGAAAAGAACAAAAGAAGGGTGCAAAACAGGGCTGCTGAAC
1 TTGAAAAGAACAAAAGAAGGGTGCAAAACAGGGCTGCTGAAC
* * * * *
67399437 TTGAAAAAAATGAAGAAGAAAGG-G-ACAACAATGG-TG-TG-AC
1 TTGAAAAGAA-CAA-AAGAAGGGTGCAAAAC-AGGGCTGCTGAAC
67399477 TTTGAAAAGAACAAAAGAAGGGTGCAAAACAGGGCTGCTGAAC
1 -TTGAAAAGAACAAAAGAAGGGTGCAAAACAGGGCTGCTGAAC
67399520 TTGAAAA
1 TTGAAAA
67399527 AAATGAAGAA
Statistics
Matches: 71, Mismatches: 10, Indels: 18
0.72 0.10 0.18
Matches are distributed among these distances:
39 7 0.10
40 8 0.11
41 17 0.24
42 24 0.34
43 8 0.11
44 7 0.10
ACGTcount: A:0.47, C:0.11, G:0.27, T:0.14
Consensus pattern (42 bp):
TTGAAAAGAACAAAAGAAGGGTGCAAAACAGGGCTGCTGAAC
Found at i:67399453 original size:83 final size:83
Alignment explanation
Indices: 67399336--67399590 Score: 465
Period size: 83 Copynumber: 3.1 Consensus size: 83
67399326 AAGGCTTACA
*
67399336 AAAACAGGGCTGTTGAACTTGAAAAAAATGAAGAAGAAAGGGACAACAATGGTGTGACTTTGAAA
1 AAAACAGGGCTGCTGAACTTGAAAAAAATGAAGAAGAAAGGGACAACAATGGTGTGACTTTGAAA
67399401 AGAACAAAAGAAGGGTGC
66 AGAACAAAAGAAGGGTGC
67399419 AAAACAGGGCTGCTGAACTTGAAAAAAATGAAGAAGAAAGGGACAACAATGGTGTGACTTTGAAA
1 AAAACAGGGCTGCTGAACTTGAAAAAAATGAAGAAGAAAGGGACAACAATGGTGTGACTTTGAAA
67399484 AGAACAAAAGAAGGGTGC
66 AGAACAAAAGAAGGGTGC
67399502 AAAACAGGGCTGCTGAACTTGAAAAAAATGAAGAAGAAAGGGACAACAATGGTGTGACTTTGAAA
1 AAAACAGGGCTGCTGAACTTGAAAAAAATGAAGAAGAAAGGGACAACAATGGTGTGACTTTGAAA
* * **
67399567 GGGACAAAAGAACAGTGC
66 AGAACAAAAGAAGGGTGC
67399585 AAAACA
1 AAAACA
67399591 ATTTGTACGG
Statistics
Matches: 167, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
83 167 1.00
ACGTcount: A:0.47, C:0.11, G:0.27, T:0.15
Consensus pattern (83 bp):
AAAACAGGGCTGCTGAACTTGAAAAAAATGAAGAAGAAAGGGACAACAATGGTGTGACTTTGAAA
AGAACAAAAGAAGGGTGC
Found at i:67399775 original size:41 final size:41
Alignment explanation
Indices: 67399718--67399804 Score: 165
Period size: 41 Copynumber: 2.1 Consensus size: 41
67399708 CGCGAACACT
67399718 GTGGTTGAGTGAATAATCAACTTTTATACAATCAAAATATG
1 GTGGTTGAGTGAATAATCAACTTTTATACAATCAAAATATG
*
67399759 GTGGTTGAGTGAATAATCAACTTTTATACAATCTAAATATG
1 GTGGTTGAGTGAATAATCAACTTTTATACAATCAAAATATG
67399800 GTGGT
1 GTGGT
67399805 ATCTGCAAGT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.36, C:0.09, G:0.20, T:0.36
Consensus pattern (41 bp):
GTGGTTGAGTGAATAATCAACTTTTATACAATCAAAATATG
Found at i:67401006 original size:15 final size:14
Alignment explanation
Indices: 67400980--67401022 Score: 59
Period size: 15 Copynumber: 3.0 Consensus size: 14
67400970 ATTAAATAGG
*
67400980 AAAGAAAAGAAAGA
1 AAAGAGAAGAAAGA
*
67400994 GAAGAGTAAGAAAGA
1 AAAGAG-AAGAAAGA
67401009 AAAGAGAAGAAAGA
1 AAAGAGAAGAAAGA
67401023 TGCATGACTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 12 0.48
15 13 0.52
ACGTcount: A:0.70, C:0.00, G:0.28, T:0.02
Consensus pattern (14 bp):
AAAGAGAAGAAAGA
Found at i:67403772 original size:23 final size:23
Alignment explanation
Indices: 67403737--67403783 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
67403727 TATTAGTTAA
* *
67403737 AAGGGTTAAATAATATTTA-ACC
1 AAGGATTAAATAATAATTATACC
67403759 AAGGATTAATATAATAATTATACC
1 AAGGATTAA-ATAATAATTATACC
67403783 A
1 A
67403784 CTATTATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 8 0.38
23 9 0.43
24 4 0.19
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.32
Consensus pattern (23 bp):
AAGGATTAAATAATAATTATACC
Found at i:67404659 original size:20 final size:20
Alignment explanation
Indices: 67404634--67404673 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
67404624 GTCCCCATAT
67404634 GGTAATTAGACCATTAATAA
1 GGTAATTAGACCATTAATAA
67404654 GGTAATTAGACCATTAATAA
1 GGTAATTAGACCATTAATAA
67404674 AAGTATGTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.10, G:0.15, T:0.30
Consensus pattern (20 bp):
GGTAATTAGACCATTAATAA
Found at i:67407045 original size:40 final size:38
Alignment explanation
Indices: 67406985--67407152 Score: 124
Period size: 40 Copynumber: 4.3 Consensus size: 38
67406975 CCTTCAGAAT
* **
67406985 TTAA-CCGGATATAGCTACTCGTTCAAATGCCTTCGGGAC
1 TTAACCCGGATTTAG-TACTCGCACAAATGCCTTCGGG-C
* *
67407024 TTAACCCGGATTTAGTGACTCGCACCAATGCCTTCAGGC
1 TTAACCCGGATTTAGT-ACTCGCACAAATGCCTTCGGGC
* * *
67407063 TTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATC
1 TTAACCCGGATTTAGT-ACTCGCACAAATGCCTTCGG-GC
** * * *
67407103 TTAGTCCGGATATAGTCATTTAGCACAAA-GCCTTCGGGAC
1 TTAACCCGGATTTAGT-A-CTCGCACAAATGCCTTCGGG-C
*
67407143 TTAGCCCGGA
1 TTAACCCGGA
67407153 CATCATTCGA
Statistics
Matches: 105, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
39 38 0.36
40 59 0.56
41 8 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (38 bp):
TTAACCCGGATTTAGTACTCGCACAAATGCCTTCGGGC
Found at i:67407084 original size:39 final size:40
Alignment explanation
Indices: 67407008--67407105 Score: 128
Period size: 39 Copynumber: 2.5 Consensus size: 40
67406998 GCTACTCGTT
* * *
67407008 CAAATGCCTTCGGGACTTAACCCGGATTTAGTGACTCGCA
1 CAAATGCCTTCAGGACTTAACCCGGAATTAGTAACTCGCA
* *
67407048 CCAATGCCTTCAGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCAGGACTTAACCCGGAATTAGTAACTCGCA
67407087 CAAATGCCTTC-GGATCTTA
1 CAAATGCCTTCAGGA-CTTA
67407106 GTCCGGATAT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.04
39 32 0.64
40 16 0.32
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCAGGACTTAACCCGGAATTAGTAACTCGCA
Found at i:67410030 original size:30 final size:30
Alignment explanation
Indices: 67409965--67410032 Score: 118
Period size: 30 Copynumber: 2.3 Consensus size: 30
67409955 ACACAGGTAG
* *
67409965 ACACAAGGACGTATGTCTAGACCGTGTGTG
1 ACACACGGACGTATGTCTAGACCGTGTGTA
67409995 ACACACGGACGTATGTCTAGACCGTGTGTA
1 ACACACGGACGTATGTCTAGACCGTGTGTA
67410025 ACACACGG
1 ACACACGG
67410033 TCTGGTAACA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.28, C:0.24, G:0.28, T:0.21
Consensus pattern (30 bp):
ACACACGGACGTATGTCTAGACCGTGTGTA
Found at i:67428905 original size:45 final size:45
Alignment explanation
Indices: 67428856--67428978 Score: 194
Period size: 45 Copynumber: 2.7 Consensus size: 45
67428846 ATTTCATCGA
*
67428856 CATTATAGCCTGCTAGGCTCGAAA-GCCCGATTAGTATCTCACCGG
1 CATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATCTCACCGG
* *
67428901 CATTATAGCCTGCTAGGCCCAAAGGCCCGAATAGTGTCTCACCGG
1 CATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGG
*
67428946 CATAATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 CATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
67428979 TAATACCAGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
44 3 0.04
45 69 0.96
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21
Consensus pattern (45 bp):
CATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGG
Found at i:67429019 original size:38 final size:38
Alignment explanation
Indices: 67428971--67429206 Score: 280
Period size: 38 Copynumber: 6.2 Consensus size: 38
67428961 GGCTCAAAGG
* *
67428971 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACTAAGCCTGCGGGATTTAA
* * * *
67429009 CCCAGATATAATACCAGCA-TGAAGCCTACAGGAATTAA
1 CCCGGATATAATACCAGCACT-AAGCCTGCGGGATTTAA
* * * *
67429047 CCTGGATATATTACCAGCACGAAGCCTGCGAGATTTAA
1 CCCGGATATAATACCAGCACTAAGCCTGCGGGATTTAA
*
67429085 CCCAGATATAATACCAGCA-TGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACT-AAGCCTGCGGGATTTAA
*
67429123 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACTAAGCCTGCGGGATTTAA
* **
67429161 CCCGGATATAATTCCAGCA-TATAGCCTGCGGTCTTTAA
1 CCCGGATATAATACCAGCACTA-AGCCTGCGGGATTTAA
*
67429199 GCCGGATA
1 CCCGGATA
67429207 CAAATATCAT
Statistics
Matches: 167, Mismatches: 26, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
37 2 0.01
38 165 0.99
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.22
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACTAAGCCTGCGGGATTTAA
Found at i:67429187 original size:76 final size:76
Alignment explanation
Indices: 67428971--67429206 Score: 330
Period size: 76 Copynumber: 3.1 Consensus size: 76
67428961 GGCTCAAAGG
* * *
67428971 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAACCCAGATATAATACCAGCATGAAGCCT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAATACCAGCATGAAGCCT
* * *
67429036 ACAGGAATTAA
66 GCGGGATTTAA
* * *
67429047 CCTGGATATATTACCAGCACGAAGCCTGCGAGATTTAACCCAGATATAATACCAGCATGAAGCCT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAATACCAGCATGAAGCCT
67429112 GCGGGATTTAA
66 GCGGGATTTAA
* *
67429123 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATTCCAGCAT-ATAGCC
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAATACCAGCATGA-AGCC
**
67429187 TGCGGTCTTTAA
65 TGCGGGATTTAA
*
67429199 GCCGGATA
1 CCCGGATA
67429207 CAAATATCAT
Statistics
Matches: 142, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
75 1 0.01
76 141 0.99
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.22
Consensus pattern (76 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAATACCAGCATGAAGCCT
GCGGGATTTAA
Found at i:67429964 original size:6 final size:6
Alignment explanation
Indices: 67429942--67430091 Score: 114
Period size: 6 Copynumber: 24.8 Consensus size: 6
67429932 AACCAAAATG
*
67429942 AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC AGAATC
* * * *
67429990 AGAATC AGAATC AGAATT AG-GTGAC AAAATT AGAATC AGAATC AGTAA-C
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AG-AATC
* * * *
67430039 AGAATT AGAATC AGAATC AGTATT AGTAAT- AGAATC AGAATT AGAATC
1 AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC
67430087 AGAAT
1 AGAAT
67430092 GTGAATGCAA
Statistics
Matches: 114, Mismatches: 17, Indels: 26
0.73 0.11 0.17
Matches are distributed among these distances:
5 11 0.10
6 93 0.82
7 8 0.07
8 2 0.02
ACGTcount: A:0.49, C:0.11, G:0.17, T:0.23
Consensus pattern (6 bp):
AGAATC
Found at i:67430088 original size:30 final size:30
Alignment explanation
Indices: 67429942--67430091 Score: 161
Period size: 30 Copynumber: 5.2 Consensus size: 30
67429932 AACCAAAATG
*
67429942 AGAATCAGTAACAGAATCAGAATCAGAATC
1 AGAATTAGTAACAGAATCAGAATCAGAATC
67429972 A-ATATTAGTAACAGAATCAGAATCAGAATC
1 AGA-ATTAGTAACAGAATCAGAATCAGAATC
* *
67430002 AGAATTAGGT----G-A-CAAAATTAGAATC
1 AGAATTA-GTAACAGAATCAGAATCAGAATC
* *
67430027 AGAATCAGTAACAGAATTAGAATCAGAATC
1 AGAATTAGTAACAGAATCAGAATCAGAATC
* * *
67430057 AGTATTAGTAATAGAATCAGAATTAGAATC
1 AGAATTAGTAACAGAATCAGAATCAGAATC
67430087 AGAAT
1 AGAAT
67430092 GTGAATGCAA
Statistics
Matches: 98, Mismatches: 13, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
24 2 0.02
25 17 0.17
26 1 0.01
27 1 0.01
28 1 0.01
29 2 0.02
30 71 0.72
31 3 0.03
ACGTcount: A:0.49, C:0.11, G:0.17, T:0.23
Consensus pattern (30 bp):
AGAATTAGTAACAGAATCAGAATCAGAATC
Found at i:67430097 original size:24 final size:23
Alignment explanation
Indices: 67429921--67430000 Score: 56
Period size: 24 Copynumber: 3.3 Consensus size: 23
67429911 AAGAAACATT
* * *
67429921 ATCAGAATTGGAACCAAAATGAGA
1 ATCAGAATT-GAATCAGAATCAGA
**
67429945 ATCAGTAACAGAATCAGAATCAGA
1 ATCAG-AATTGAATCAGAATCAGA
67429969 ATCA-ATATTAGTAA-CAGAATCAGA
1 ATCAGA-ATT-G-AATCAGAATCAGA
67429993 ATCAGAAT
1 ATCAGAAT
67430001 CAGAATTAGG
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
22 1 0.02
23 1 0.02
24 37 0.84
25 5 0.11
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.20
Consensus pattern (23 bp):
ATCAGAATTGAATCAGAATCAGA
Found at i:67430279 original size:27 final size:27
Alignment explanation
Indices: 67430209--67430290 Score: 89
Period size: 27 Copynumber: 3.1 Consensus size: 27
67430199 AGCATGGCTG
* *
67430209 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
67430235 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
*
67430262 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAATCAGATAATGTGGCAGAGCCA
67430289 CC
1 CC
67430291 TAATAGAATA
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
25 1 0.02
26 4 0.09
27 39 0.83
28 3 0.06
ACGTcount: A:0.37, C:0.24, G:0.23, T:0.16
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:67430495 original size:22 final size:22
Alignment explanation
Indices: 67430447--67430503 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 22
67430437 GTAAATACGT
*
67430447 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
67430469 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
67430491 TTGGCACAGAGCC
1 TTGGCACAAAGCC
67430504 TTTAATAACG
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.32, C:0.23, G:0.26, T:0.19
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:67430632 original size:27 final size:26
Alignment explanation
Indices: 67430593--67430675 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
67430583 TCGATTGGTC
* *
67430593 AACAGATATTGTGATAGAGTCACCAG
1 AACAGATATTGTGACAGAGCCACCAG
*
67430619 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGACAGAGCCACCAG
* *
67430646 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGACAGAGCCACCAG
67430673 AAC
1 AAC
67430676 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGACAGAGCCACCAG
Found at i:67430923 original size:27 final size:27
Alignment explanation
Indices: 67430893--67431069 Score: 246
Period size: 27 Copynumber: 6.6 Consensus size: 27
67430883 AACCCACAAA
* * *
67430893 GGTATCTCGGTAATTCTACCCTAAAGG
1 GGTATTTCGATAATTCTACCCTACAGG
* * *
67430920 GGTATTTCGGTATTTCTACCCTACAAG
1 GGTATTTCGATAATTCTACCCTACAGG
* *
67430947 GGTATTTTGATAATTCTACCCTACGGG
1 GGTATTTCGATAATTCTACCCTACAGG
* *
67430974 GGTATTGCTATAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
*
67431001 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
67431028 GGTATTTCGATAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
*
67431055 GGTCTTTCGATAATT
1 GGTATTTCGATAATT
67431070 TTGTAAACCA
Statistics
Matches: 132, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 132 1.00
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTATTTCGATAATTCTACCCTACAGG
Found at i:67431084 original size:27 final size:27
Alignment explanation
Indices: 67431065--67431126 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
67431055 GGTCTTTCGA
**
67431065 TAATTTTGTAAACCAAGGGTATTTTGG
1 TAATTTTACAAACCAAGGGTATTTTGG
*
67431092 TAATTTTACAAACCAGGGGTATTTTGG
1 TAATTTTACAAACCAAGGGTATTTTGG
67431119 TAATTTTA
1 TAATTTTA
67431127 TTGATCGAGG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (27 bp):
TAATTTTACAAACCAAGGGTATTTTGG
Found at i:67431173 original size:27 final size:27
Alignment explanation
Indices: 67431143--67431548 Score: 326
Period size: 27 Copynumber: 14.6 Consensus size: 27
67431133 GAGGGTATTT
* * *
67431143 CAGTAATTTTGCAAATTAAGGGTAAAA
1 CAGTAATTCTGTAAATTGAGGGTAAAA
*
67431170 CAGTAATTCTGTAAACTGAGGGTAAAA
1 CAGTAATTCTGTAAATTGAGGGTAAAA
* *
67431197 CGGTAATTCTGTAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATTGAGGGTAAAA
*
67431224 CAGTAATTCTGTAAACTGAGGGTAAAA
1 CAGTAATTCTGTAAATTGAGGGTAAAA
* *
67431251 CAGTAATTCTATAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATTGAGGGTAAAA
*** * * *** **
67431278 CAGTAGGTAAAATAGTAATTCTATAAACTGAGGGTA
1 CAGTA---ATTCT-GTAAAT-T-GAGGGT-A--AAA
* * *
67431314 AAACGGTAATTCTGTAAATCGAAGGTAAAA
1 C-A--GTAATTCTGTAAATTGAGGGTAAAA
* * *
67431344 TAGTAATTCTATAAACTGAGGGTAAAA
1 CAGTAATTCTGTAAATTGAGGGTAAAA
* *
67431371 CGGTAATTCTGTAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATTGAGGGTAAAA
* * ** *
67431398 CGGTAATTTTACAAATTGAGGGTAAAG
1 CAGTAATTCTGTAAATTGAGGGTAAAA
* * *
67431425 CGGTAATTCTATAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATTGAGGGTAAAA
*
67431452 CAGTAATTCTGTAAACTGAGGGTAAAA
1 CAGTAATTCTGTAAATTGAGGGTAAAA
* *
67431479 CAGTAATTCTATAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATTGAGGGTAAAA
* * *
67431506 CGGTAATTTTGTAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATTGAGGGTAAAA
*
67431533 CGGTAATTCTGTAAAT
1 CAGTAATTCTGTAAAT
67431549 CGAGAGTACT
Statistics
Matches: 301, Mismatches: 66, Indels: 24
0.77 0.17 0.06
Matches are distributed among these distances:
27 274 0.91
29 1 0.00
30 3 0.01
31 4 0.01
32 1 0.00
33 5 0.02
34 1 0.00
35 5 0.02
36 3 0.01
37 1 0.00
39 3 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
CAGTAATTCTGTAAATTGAGGGTAAAA
Found at i:67431191 original size:54 final size:54
Alignment explanation
Indices: 67431143--67431549 Score: 377
Period size: 54 Copynumber: 7.3 Consensus size: 54
67431133 GAGGGTATTT
* *
67431143 CAGTAATTTTGCAAATTAAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAA
1 CAGTAATTCTGCAAATCAAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAA
* * *
67431197 CGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAA
1 CAGTAATTCTGCAAATCAAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAA
** * *
67431251 CAGTAATTCTATAAATCGAGGGTAAAACAGTAGGTAAAATAGTAATTCTATAAACTGAGGGTAAA
1 CAGTAATTCTGCAAATC---------A-AG--GGTAAAACAGTAATTCTGTAAACTGAGGGTAAA
67431316 A
54 A
* * * *
67431317 CGGTAATTCTGTAAATCGAA-GGTAAAATAGTAATTCTATAAACTGAGGGTAAAA
1 CAGTAATTCTGCAAATC-AAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAA
* * * * * ** * *
67431371 CGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATTGAGGGTAAAG
1 CAGTAATTCTGCAAATCAAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAA
* ** *
67431425 CGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAA
1 CAGTAATTCTGCAAATCAAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAA
** * * *
67431479 CAGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAA-TCGAGGGTAAAA
1 CAGTAATTCTGCAAATCAAGGGTAAAACAGTAATTCTGTAAACT-GAGGGTAAAA
* *
67431533 CGGTAATTCTGTAAATC
1 CAGTAATTCTGCAAATC
67431550 GAGAGTACTT
Statistics
Matches: 307, Mismatches: 32, Indels: 28
0.84 0.09 0.08
Matches are distributed among these distances:
53 2 0.01
54 254 0.83
57 1 0.00
58 1 0.00
64 2 0.01
66 47 0.15
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (54 bp):
CAGTAATTCTGCAAATCAAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAA
Found at i:67431193 original size:81 final size:81
Alignment explanation
Indices: 67431143--67431552 Score: 373
Period size: 81 Copynumber: 4.9 Consensus size: 81
67431133 GAGGGTATTT
* * *
67431143 CAGTAATTTTGCAAATTAAGGGTAAAACAGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCT
1 CAGTAATTCTGCAAACTAAGGGTAAAACAGTAATTCTATAAATC-GAGGGTAAAACGGTAATTCT
*
67431207 GTAAATCGAGGGTAAAA
65 ATAAATCGAGGGTAAAA
* *
67431224 CAGTAATTCTGTAAACTGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACAGTAGGTAAA
1 CAGTAATTCTGCAAACTAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAC-----G----
67431289 ATAGTAATTCTATAAA-CTGAGGGTAAAA
57 ---GTAATTCTATAAATC-GAGGGTAAAA
* * * *
67431317 CGGTAATTCTGTAAATCGAA-GGTAAAATAGTAATTCTATAAA-CTGAGGGTAAAACGGTAATTC
1 CAGTAATTCTGCAAA-CTAAGGGTAAAACAGTAATTCTATAAATC-GAGGGTAAAACGGTAATTC
*
67431380 TGTAAATCGAGGGTAAAA
64 TATAAATCGAGGGTAAAA
* * * * * * * * *
67431398 CGGTAATTTTACAAATTGAGGGTAAAGCGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTG
1 CAGTAATTCTGCAAACTAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTA
67431463 TAAA-CTGAGGGTAAAA
66 TAAATC-GAGGGTAAAA
** * * * *
67431479 CAGTAATTCTATAAA-TCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCT
1 CAGTAATTCTGCAAACT-AAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCT
*
67431543 GTAAATCGAG
65 ATAAATCGAG
67431553 AGTACTTTGG
Statistics
Matches: 279, Mismatches: 28, Indels: 44
0.79 0.08 0.13
Matches are distributed among these distances:
80 3 0.01
81 198 0.71
82 4 0.01
86 1 0.00
88 1 0.00
92 2 0.01
93 68 0.24
94 2 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (81 bp):
CAGTAATTCTGCAAACTAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTA
TAAATCGAGGGTAAAA
Found at i:67431349 original size:93 final size:93
Alignment explanation
Indices: 67431190--67431371 Score: 262
Period size: 93 Copynumber: 2.0 Consensus size: 93
67431180 GTAAACTGAG
* * *
67431190 GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAACAGT
1 GGTAAAACAGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAAGGTAAAACAGT
67431255 AATTCTATAAA-TCGAGGGTAAAACAGTA
66 AATTCTATAAACT-GAGGGTAAAACAGTA
* * *
67431283 GGTAAAATAGTAATTCTATAAA-CTGAGGGTAAAACGGTAATTCTGTAAA-TCGAAGGTAAAATA
1 GGTAAAACAGTAATTCTATAAATC-GAGGGTAAAACAGTAATTCTGTAAACT-GAAGGTAAAACA
67431346 GTAATTCTATAAACTGAGGGTAAAAC
64 GTAATTCTATAAACTGAGGGTAAAAC
67431372 GGTAATTCTG
Statistics
Matches: 80, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
92 2 0.03
93 77 0.96
94 1 0.01
ACGTcount: A:0.43, C:0.10, G:0.21, T:0.26
Consensus pattern (93 bp):
GGTAAAACAGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAAGGTAAAACAGT
AATTCTATAAACTGAGGGTAAAACAGTA
Found at i:67431549 original size:27 final size:27
Alignment explanation
Indices: 67431283--67431552 Score: 339
Period size: 27 Copynumber: 10.0 Consensus size: 27
67431273 TAAAACAGTA
**
67431283 GGTAAAATAGTAATTCTATAAA-CTGAG
1 GGTAAAACGGTAATTCTATAAATC-GAG
* *
67431310 GGTAAAACGGTAATTCTGTAAATCGAA
1 GGTAAAACGGTAATTCTATAAATCGAG
**
67431337 GGTAAAATAGTAATTCTATAAA-CTGAG
1 GGTAAAACGGTAATTCTATAAATC-GAG
*
67431364 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTATAAATCGAG
* * *
67431391 GGTAAAACGGTAATTTTACAAATTGAG
1 GGTAAAACGGTAATTCTATAAATCGAG
*
67431418 GGTAAAGCGGTAATTCTATAAATCGAG
1 GGTAAAACGGTAATTCTATAAATCGAG
* *
67431445 GGTAAAACAGTAATTCTGTAAA-CTGAG
1 GGTAAAACGGTAATTCTATAAATC-GAG
*
67431472 GGTAAAACAGTAATTCTATAAATCGAG
1 GGTAAAACGGTAATTCTATAAATCGAG
* *
67431499 GGTAAAACGGTAATTTTGTAAATCGAG
1 GGTAAAACGGTAATTCTATAAATCGAG
*
67431526 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTATAAATCGAG
67431553 AGTACTTTGG
Statistics
Matches: 211, Mismatches: 27, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
26 2 0.01
27 206 0.98
28 3 0.01
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.27
Consensus pattern (27 bp):
GGTAAAACGGTAATTCTATAAATCGAG
Found at i:67431550 original size:54 final size:54
Alignment explanation
Indices: 67431283--67431552 Score: 389
Period size: 54 Copynumber: 5.0 Consensus size: 54
67431273 TAAAACAGTA
* *
67431283 GGTAAAATAGTAATTCTATAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAA
1 GGTAAAACAGTAATTCTATAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAG
*
67431337 GGTAAAATAGTAATTCTATAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAG
1 GGTAAAACAGTAATTCTATAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAG
* * * * * *
67431391 GGTAAAACGGTAATTTTACAAATTGAGGGTAAAGCGGTAATTCTATAAATCGAG
1 GGTAAAACAGTAATTCTATAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAG
* * *
67431445 GGTAAAACAGTAATTCTGTAAACTGAGGGTAAAACAGTAATTCTATAAATCGAG
1 GGTAAAACAGTAATTCTATAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAG
* * *
67431499 GGTAAAACGGTAATTTTGTAAA-TCGAGGGTAAAACGGTAATTCTGTAAATCGAG
1 GGTAAAACAGTAATTCTATAAACT-GAGGGTAAAACGGTAATTCTGTAAATCGAG
67431553 AGTACTTTGG
Statistics
Matches: 196, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
53 1 0.01
54 195 0.99
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.27
Consensus pattern (54 bp):
GGTAAAACAGTAATTCTATAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAG
Found at i:67432748 original size:43 final size:46
Alignment explanation
Indices: 67432640--67432754 Score: 150
Period size: 45 Copynumber: 2.6 Consensus size: 46
67432630 ATATAACATT
* **
67432640 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCTTGAATAA
1 TCATTTCACCGGCATTATAGCCTGCTAAGCTCAAAGGCCCGAATAA
*
67432686 T-ATTTCACCGGCATCATAGCCTAG-TAAGCTCAAA-GCCCG-AT-A
1 TCATTTCACCGGCATTATAGCCT-GCTAAGCTCAAAGGCCCGAATAA
67432728 TCATTTCACCGGCATTATAGCCTGCTA
1 TCATTTCACCGGCATTATAGCCTGCTA
67432755 GGCCCGAAGC
Statistics
Matches: 61, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
42 3 0.05
43 24 0.39
44 3 0.05
45 29 0.48
46 2 0.03
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (46 bp):
TCATTTCACCGGCATTATAGCCTGCTAAGCTCAAAGGCCCGAATAA
Found at i:67436885 original size:21 final size:22
Alignment explanation
Indices: 67436859--67436914 Score: 78
Period size: 21 Copynumber: 2.6 Consensus size: 22
67436849 ACAACCTCTA
*
67436859 ACACGGGCGTGTGCCATGGTC-
1 ACACGGGCGTGTGCCATGGACT
* *
67436880 ACACGGGCGTGTCCCTTGGACT
1 ACACGGGCGTGTGCCATGGACT
67436902 ACACGGGCGTGTG
1 ACACGGGCGTGTG
67436915 AGCCCTGCAC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
21 18 0.60
22 12 0.40
ACGTcount: A:0.14, C:0.29, G:0.38, T:0.20
Consensus pattern (22 bp):
ACACGGGCGTGTGCCATGGACT
Found at i:67451020 original size:20 final size:20
Alignment explanation
Indices: 67450992--67451029 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
67450982 CTAGGAACTA
67450992 TGTGATCTGAGCTCATGAGT
1 TGTGATCTGAGCTCATGAGT
* *
67451012 TGTGGTCTGAGTTCATGA
1 TGTGATCTGAGCTCATGA
67451030 TATATGTGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.13, G:0.32, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAGCTCATGAGT
Found at i:67455613 original size:39 final size:39
Alignment explanation
Indices: 67455369--67455601 Score: 299
Period size: 39 Copynumber: 6.0 Consensus size: 39
67455359 CAAATTCAAT
* * * *
67455369 CACCACCACAAA-GCATGCGGGACTTTAAGCCTGGATATAA
1 CACCAGCACAAATGCCTTCGGGAC-TT-AGCCCGGATATAA
* * *
67455409 TACCAACATAAA-GCCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
* *
67455447 CACCAGCACGAATGCCTTCGGGACTTAGCCCGGGTATAA
1 CACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
* * *
67455486 CACCAGCACGAATGCCTTCGGGACTTAGCTCGGATATAG
1 CACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
* *
67455525 CACCAGCACAAATGCCTTTGAGACTTAGCCCGGATATAA
1 CACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
*
67455564 CACCAGCACAAATGCCTTCGGGAATTAGCCCGGATATA
1 CACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
67455602 TGTCTCACAC
Statistics
Matches: 170, Mismatches: 22, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
38 20 0.12
39 132 0.78
40 18 0.11
ACGTcount: A:0.31, C:0.28, G:0.21, T:0.19
Consensus pattern (39 bp):
CACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
Found at i:67460747 original size:39 final size:39
Alignment explanation
Indices: 67460696--67460950 Score: 348
Period size: 39 Copynumber: 6.5 Consensus size: 39
67460686 TGTGAATCAT
*
67460696 GGGTACCGAAGTACAACAGGGGCACATATGTGCATTCAG
1 GGGTACCGAAGTACAACAGGGGCACGTATGTGCATTCAG
* * * * * *
67460735 GGGTACCAAAGTACAATAGGGGAACGTATTTGCGTTTAG
1 GGGTACCGAAGTACAACAGGGGCACGTATGTGCATTCAG
**
67460774 GGGTACTAAAGTACAACAGGGGCACGTATGTGCATTCAG
1 GGGTACCGAAGTACAACAGGGGCACGTATGTGCATTCAG
* * *
67460813 GGGTACCAAACTACAACAGGGGCACGTATGTGCATTCAT
1 GGGTACCGAAGTACAACAGGGGCACGTATGTGCATTCAG
* * * *
67460852 GGGTACTGAAGTACAAGAGGGGCACGTATGTGCGTTTAG
1 GGGTACCGAAGTACAACAGGGGCACGTATGTGCATTCAG
*
67460891 GGGTACCGAAGTACAACAAGGGCACGTATGTGCATTCAG
1 GGGTACCGAAGTACAACAGGGGCACGTATGTGCATTCAG
*
67460930 GGGTATCGAAGTACAACAGGG
1 GGGTACCGAAGTACAACAGGG
67460951 TATAATTATA
Statistics
Matches: 186, Mismatches: 30, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 186 1.00
ACGTcount: A:0.30, C:0.18, G:0.32, T:0.20
Consensus pattern (39 bp):
GGGTACCGAAGTACAACAGGGGCACGTATGTGCATTCAG
Found at i:67460903 original size:117 final size:117
Alignment explanation
Indices: 67460696--67460950 Score: 393
Period size: 117 Copynumber: 2.2 Consensus size: 117
67460686 TGTGAATCAT
*
67460696 GGGTACCGAAGTACAACAGGGGCACATATGTGCATTCAGGGGTACCAAAGTACAATAGGGGAACG
1 GGGTACCGAAGTACAACAGGGGCACATATGTGCATTCAGGGGTACCAAAGTACAAGAGGGGAACG
* * *
67460761 TATTTGCGTTTAGGGGTACTAAAGTACAACAGGGGCACGTATGTGCATTCAG
66 TATGTGCGTTTAGGGGTACCAAAGTACAACAAGGGCACGTATGTGCATTCAG
* * * * ** *
67460813 GGGTACCAAACTACAACAGGGGCACGTATGTGCATTCATGGGTACTGAAGTACAAGAGGGGCACG
1 GGGTACCGAAGTACAACAGGGGCACATATGTGCATTCAGGGGTACCAAAGTACAAGAGGGGAACG
*
67460878 TATGTGCGTTTAGGGGTACCGAAGTACAACAAGGGCACGTATGTGCATTCAG
66 TATGTGCGTTTAGGGGTACCAAAGTACAACAAGGGCACGTATGTGCATTCAG
*
67460930 GGGTATCGAAGTACAACAGGG
1 GGGTACCGAAGTACAACAGGG
67460951 TATAATTATA
Statistics
Matches: 123, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
117 123 1.00
ACGTcount: A:0.30, C:0.18, G:0.32, T:0.20
Consensus pattern (117 bp):
GGGTACCGAAGTACAACAGGGGCACATATGTGCATTCAGGGGTACCAAAGTACAAGAGGGGAACG
TATGTGCGTTTAGGGGTACCAAAGTACAACAAGGGCACGTATGTGCATTCAG
Found at i:67463336 original size:18 final size:18
Alignment explanation
Indices: 67463313--67463348 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
67463303 CATATAGATA
67463313 TTAAATTACAAACCGAAC
1 TTAAATTACAAACCGAAC
67463331 TTAAATTACAAACCGAAC
1 TTAAATTACAAACCGAAC
67463349 GAACTTACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.22, G:0.06, T:0.22
Consensus pattern (18 bp):
TTAAATTACAAACCGAAC
Found at i:67467949 original size:39 final size:40
Alignment explanation
Indices: 67467859--67467951 Score: 134
Period size: 41 Copynumber: 2.3 Consensus size: 40
67467849 GAAAATATTT
* *
67467859 TGTAATTAGATAAAATGTTATGAATTTTGTAAAAAAAAATG
1 TGTAATTAGATAAAATATTATCAATTTTGT-AAAAAAAATG
* *
67467900 TGTAACTAGATAAAATATTATCAATTTTGT-ACAAAAATG
1 TGTAATTAGATAAAATATTATCAATTTTGTAAAAAAAATG
67467939 TGTAATTAGATAA
1 TGTAATTAGATAA
67467952 TATTTTGTAA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
39 20 0.43
41 27 0.57
ACGTcount: A:0.47, C:0.03, G:0.13, T:0.37
Consensus pattern (40 bp):
TGTAATTAGATAAAATATTATCAATTTTGTAAAAAAAATG
Found at i:67479950 original size:47 final size:47
Alignment explanation
Indices: 67479891--67480357 Score: 862
Period size: 47 Copynumber: 9.9 Consensus size: 47
67479881 TAGTATGGCG
67479891 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
67479938 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
67479985 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
67480032 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
67480079 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
67480126 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
67480173 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
67480220 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
67480267 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
67480314 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
67480358 TCCCGAAGGG
Statistics
Matches: 410, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 410 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:67480532 original size:37 final size:37
Alignment explanation
Indices: 67480476--67480554 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
67480466 CCAAGCTCTA
* * *
67480476 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
67480513 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
67480550 AAGAC
1 AAGAC
67480555 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:67485771 original size:40 final size:40
Alignment explanation
Indices: 67485716--67485867 Score: 189
Period size: 40 Copynumber: 3.8 Consensus size: 40
67485706 ATAACCACAA
* * *
67485716 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
67485756 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
67485796 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * *
67485836 GCATAAATGCCTTCAGGACTTAGCCCGAATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
67485868 CATTCAAATG
Statistics
Matches: 100, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
39 1 0.01
40 95 0.95
41 4 0.04
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:67500242 original size:50 final size:50
Alignment explanation
Indices: 67500165--67500407 Score: 263
Period size: 50 Copynumber: 4.8 Consensus size: 50
67500155 GTTGTGAGAA
* *
67500165 CACATGTGTAGTAATAAGTGCAGGCTACTATGTGTACTAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* * ** * * * *
67500215 CGCATGTGTAGTACTAAGTGTAGGCTACTATGCATACCCGATAGCTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG-TTAGGT
* * * *
67500266 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCC-GATGGTTAGGA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CCAGATTGTTAGGT
* * * *
67500316 CACGTGTGGAGTACTAAGTGCAGACTACTACGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
** * *
67500366 CATGTGTGCAGTACTAAGTGCAGGATACTATGTGTACCAGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT
67500408 AGCTTCAGTT
Statistics
Matches: 161, Mismatches: 29, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 2 0.01
50 119 0.74
51 38 0.24
52 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
Found at i:67500344 original size:101 final size:100
Alignment explanation
Indices: 67500169--67500407 Score: 264
Period size: 101 Copynumber: 2.4 Consensus size: 100
67500159 TGAGAACACA
* * * * *
67500169 TGTGTAGTAATAAGTGCAGGCTACTATGTGTACTAGATTGTTAGGTCGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACTAGATGGTTAGGACACATGTGGAGTACTAAGT
* * * * *
67500234 GTAGGCTACTATGCATACCCGATAGCTTCGATCACG
66 GCAGACTACTACGCATACCAGATAG-TTAGATCACG
* * *
67500270 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCCGATGGTTAGGACACGTGTGGAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACT-AGATGGTTAGGACACATGTGGAGTACTAAG
** * * *
67500334 TGCAGACTACTACGTGTACCAGATTGTTAGGTCATG
65 TGCAGACTACTACGCATACCAGATAGTTAGATCACG
* * *
67500370 TGTGCAGTACTAAGTGCAGGATACTATGTGTACCAGAT
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACTAGAT
67500408 AGCTTCAGTT
Statistics
Matches: 113, Mismatches: 23, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
100 40 0.35
101 73 0.65
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (100 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACTAGATGGTTAGGACACATGTGGAGTACTAAGT
GCAGACTACTACGCATACCAGATAGTTAGATCACG
Found at i:67503648 original size:47 final size:47
Alignment explanation
Indices: 67503573--67504031 Score: 632
Period size: 47 Copynumber: 9.5 Consensus size: 47
67503563 TTCGGGACTT
* * * * * *
67503573 ATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGG-CTC
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
*
67503619 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
1 -ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
*
67503667 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
* *
67503714 ATCACATATATATACATTCACATTCATCACATCGGCCATTAGGCCTC
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
67503761 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
67503808 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGTGGCCATTCGGCC
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTA---GGCC--T----C
*
67503864 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 --ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
* * *
67503913 ATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTT
1 ATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
*
67503962 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
* *
67504009 ATCACATATATATACATTCACAT
1 ATCACATATATACACTTTCACAT
67504032 CACAATTATC
Statistics
Matches: 377, Mismatches: 21, Indels: 28
0.88 0.05 0.07
Matches are distributed among these distances:
47 277 0.73
48 3 0.01
49 45 0.12
50 4 0.01
52 1 0.00
53 1 0.00
55 4 0.01
56 1 0.00
58 41 0.11
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
Found at i:67503864 original size:58 final size:56
Alignment explanation
Indices: 67503794--67504006 Score: 244
Period size: 58 Copynumber: 4.1 Consensus size: 56
67503784 TCATCACATC
*
67503794 GGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 GGCCATTCGGCCTCATCACATATATACACTTTCACATTCATCACATCGGCCATTA--T
*
67503852 GGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA-
1 GGCCATTCGGCCTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAT
* *
67503907 GGCC-TT----ATCA-CATATATATACACTTTCACATTCAT--CA-----CA-T-T
1 GGCCATTCGGCCTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAT
*
67503948 GGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA-
1 GGCCATTCGGCCTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAT
67504003 GGCC
1 GGCC
67504007 TTATCACATA
Statistics
Matches: 131, Mismatches: 8, Indels: 35
0.75 0.05 0.20
Matches are distributed among these distances:
41 5 0.04
42 4 0.03
46 2 0.02
47 26 0.20
49 26 0.20
50 2 0.02
54 4 0.03
55 9 0.07
58 53 0.40
ACGTcount: A:0.28, C:0.30, G:0.11, T:0.31
Consensus pattern (56 bp):
GGCCATTCGGCCTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAT
Found at i:67503961 original size:96 final size:94
Alignment explanation
Indices: 67503851--67504031 Score: 344
Period size: 96 Copynumber: 1.9 Consensus size: 94
67503841 GGCCATTAGG
67503851 TGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 TGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
67503916 ACATATATATACACTTTCACATTCATCACAT
66 ACATATATATACA--TTCACATTCATCACAT
67503947 TGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 TGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
67504012 ACATATATATACATTCACAT
66 ACATATATATACATTCACAT
67504032 CACAATTATC
Statistics
Matches: 85, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
94 7 0.08
96 78 0.92
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (94 bp):
TGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
ACATATATATACATTCACATTCATCACAT
Found at i:67503989 original size:154 final size:152
Alignment explanation
Indices: 67503700--67504004 Score: 529
Period size: 154 Copynumber: 2.0 Consensus size: 152
67503690 TCATCACATC
*
67503700 GGCCATTAGGCCTTATCACATATATATACATTCACATTCATCACATCGGCCATTAGGCCTCATCA
1 GGCCATTAGGCCTTATCACATATATACACATTCACATTCATCACATCGGCCATTAGGCCTCATCA
67503765 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACA
66 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACA
67503830 TTCATCACATCGGCCATTAGGT
131 TTCATCACATCGGCCATTAGGT
* * *
67503852 GGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
1 GGCCATTAGGCCTTATCACATATATACACATTCACATTCATCACATCGGCCATTAGGCCTCATCA
* * *
67503917 CATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCA
66 C--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCA
67503982 CATTCATCACATCGGCCATTAGG
129 CATTCATCACATCGGCCATTAGG
67504005 CCTTATCACA
Statistics
Matches: 144, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
152 62 0.43
154 82 0.57
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.31
Consensus pattern (152 bp):
GGCCATTAGGCCTTATCACATATATACACATTCACATTCATCACATCGGCCATTAGGCCTCATCA
CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACA
TTCATCACATCGGCCATTAGGT
Found at i:67504001 original size:201 final size:199
Alignment explanation
Indices: 67503653--67504031 Score: 668
Period size: 201 Copynumber: 1.9 Consensus size: 199
67503643 TCATCACATC
67503653 GGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
1 GGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
67503718 CATATATATACATTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACA
66 CATATATATACATTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACA
*
67503783 TTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATCGGCCATT
131 TTCATCACATCGGCCATTAGGCCTCATCACATATATACACATTCACATTCATCACATCGGCCATT
67503848 AGGT
196 AGGT
* *
67503852 GGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
1 GGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
* * *
67503917 CATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCA
66 CATATATATACA--TTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCA
* *
67503982 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTCACAT
129 CATTCATCACATCGGCCATTAGGCCTCATCACATATATACACATTCACAT
67504032 CACAATTATC
Statistics
Matches: 170, Mismatches: 8, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
199 75 0.44
201 95 0.56
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (199 bp):
GGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
CATATATATACATTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACA
TTCATCACATCGGCCATTAGGCCTCATCACATATATACACATTCACATTCATCACATCGGCCATT
AGGT
Found at i:67508770 original size:15 final size:15
Alignment explanation
Indices: 67508750--67508809 Score: 66
Period size: 15 Copynumber: 4.0 Consensus size: 15
67508740 TATGATATTG
67508750 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
* *
67508765 TATCTTTGATTTCTC
1 TATCTTGGATTTCTT
*
67508780 TATCTTGGACTTCTT
1 TATCTTGGATTTCTT
* * *
67508795 AATCCTGGTTTTCTT
1 TATCTTGGATTTCTT
67508810 GTTATCTATA
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.13, C:0.18, G:0.12, T:0.57
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:67508808 original size:30 final size:30
Alignment explanation
Indices: 67508750--67508808 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
67508740 TATGATATTG
* * * *
67508750 TATCTTGGATTTCTTTATCTTTGATTTCTC
1 TATCTTGGACTTCTTAATCCTGGATTTCTC
*
67508780 TATCTTGGACTTCTTAATCCTGGTTTTCT
1 TATCTTGGACTTCTTAATCCTGGATTTCT
67508809 TGTTATCTAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.14, C:0.19, G:0.12, T:0.56
Consensus pattern (30 bp):
TATCTTGGACTTCTTAATCCTGGATTTCTC
Found at i:67509975 original size:150 final size:150
Alignment explanation
Indices: 67509704--67510005 Score: 595
Period size: 150 Copynumber: 2.0 Consensus size: 150
67509694 TACCAAAAAG
*
67509704 GGTGGTTTTGCATGTCAATTTACCCAAAAGAAGTAGAGTGGTCGGCCAAGGGGTGATGGAGCTCC
1 GGTGGTTTTGCATGTCAATTTACCCAAAAGAAGTAGAGTGGCCGGCCAAGGGGTGATGGAGCTCC
67509769 ACTTATTCTAATTTAATATGTTTTGTTTAGTTAACAATTAAAATAAAAAGGAATTAAAAAAGGAA
66 ACTTATTCTAATTTAATATGTTTTGTTTAGTTAACAATTAAAATAAAAAGGAATTAAAAAAGGAA
67509834 AAAGGTGAATAAAATAAGGA
131 AAAGGTGAATAAAATAAGGA
67509854 GGTGGTTTTGCATGTCAATTTACCCAAAAGAAGTAGAGTGGCCGGCCAAGGGGTGATGGAGCTCC
1 GGTGGTTTTGCATGTCAATTTACCCAAAAGAAGTAGAGTGGCCGGCCAAGGGGTGATGGAGCTCC
67509919 ACTTATTCTAATTTAATATGTTTTGTTTAGTTAACAATTAAAATAAAAAGGAATTAAAAAAGGAA
66 ACTTATTCTAATTTAATATGTTTTGTTTAGTTAACAATTAAAATAAAAAGGAATTAAAAAAGGAA
67509984 AAAGGTGAATAAAATAAGGA
131 AAAGGTGAATAAAATAAGGA
67510004 GG
1 GG
67510006 GAAGAGGGAG
Statistics
Matches: 151, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 151 1.00
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.28
Consensus pattern (150 bp):
GGTGGTTTTGCATGTCAATTTACCCAAAAGAAGTAGAGTGGCCGGCCAAGGGGTGATGGAGCTCC
ACTTATTCTAATTTAATATGTTTTGTTTAGTTAACAATTAAAATAAAAAGGAATTAAAAAAGGAA
AAAGGTGAATAAAATAAGGA
Found at i:67511189 original size:28 final size:28
Alignment explanation
Indices: 67511123--67511250 Score: 184
Period size: 28 Copynumber: 4.5 Consensus size: 28
67511113 CATGAGATTG
* * **
67511123 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
67511152 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
67511180 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
67511209 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
67511237 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
67511251 GACTTACTAT
Statistics
Matches: 91, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
28 46 0.51
29 45 0.49
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:67511212 original size:57 final size:57
Alignment explanation
Indices: 67511123--67511250 Score: 195
Period size: 57 Copynumber: 2.2 Consensus size: 57
67511113 CATGAGATTG
*
67511123 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCGAGTTTGATTATATA
* * *
67511180 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCGAGTTTGATTATATA
*
67511237 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
67511251 GACTTACTAT
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
57 62 0.95
58 3 0.05
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCGAGTTTGATTATATA
Found at i:67514824 original size:40 final size:40
Alignment explanation
Indices: 67513801--67514815 Score: 1985
Period size: 40 Copynumber: 25.4 Consensus size: 40
67513791 TGAGAGTTAT
*
67513801 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
* *
67513841 ATATATCCGGGCTAAGTCCCGAAGACCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
* *
67513881 ATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
67513921 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
67513961 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
67514001 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
67514041 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
67514081 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
67514121 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
67514161 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
67514201 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
67514241 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
67514281 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
67514321 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
67514361 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
67514401 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
67514441 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
67514481 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
67514521 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
67514561 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
67514601 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
67514641 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
67514681 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
67514721 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
67514761 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
67514801 ATATATCCGGGCTAA
1 ATATATCCGGGCTAA
67514816 ACCTCGAAGG
Statistics
Matches: 970, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 970 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
Found at i:67514933 original size:57 final size:57
Alignment explanation
Indices: 67514843--67515000 Score: 199
Period size: 57 Copynumber: 2.8 Consensus size: 57
67514833 GCTAGAATTA
* * * * *
67514843 TGAGGCACTGTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCCAGATCAGTAAT
* * * **
67514900 TGAGGCACTATGTGTACGAGTTCTTCAATCGAGCACTATCTGTGCGAGATTGGTAAT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCCAGATCAGTAAT
* * *
67514957 TGAGGCACTATATGTGCGAGTTCTTTAATCGAGCGCTATGTGTG
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTG
67515001 TGAAATCAGT
Statistics
Matches: 86, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
57 86 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (57 bp):
TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCCAGATCAGTAAT
Found at i:67514947 original size:28 final size:27
Alignment explanation
Indices: 67514847--67515000 Score: 101
Period size: 28 Copynumber: 5.4 Consensus size: 27
67514837 GAATTATGAG
* * * *
67514847 GCACTGTGTGTGCAAGTTCTCCAACCGA
1 GCACTATGTGTGCGAGTTCT-TAATCGA
* * * * *
67514875 GCACTATGTGTGCCAGATCAGTAGTTGA
1 GCACTATGTGTGCGAGTTC-TTAATCGA
*
67514903 GGCACTATGTGTACGAGTTCTTCAATCGA
1 -GCACTATGTGTGCGAGTTCTT-AATCGA
* ** *
67514932 GCACTATCTGTGCGAGATTGGTAATTGA
1 GCACTATGTGTGCGAG-TTCTTAATCGA
*
67514960 GGCACTATATGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCGAGTTC-TTAATCGA
*
67514989 GCGCTATGTGTG
1 GCACTATGTGTG
67515001 TGAAATCAGT
Statistics
Matches: 95, Mismatches: 25, Indels: 12
0.72 0.19 0.09
Matches are distributed among these distances:
28 51 0.54
29 44 0.46
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (27 bp):
GCACTATGTGTGCGAGTTCTTAATCGA
Found at i:67514966 original size:29 final size:29
Alignment explanation
Indices: 67514875--67514976 Score: 91
Period size: 29 Copynumber: 3.6 Consensus size: 29
67514865 CTCCAACCGA
* * *
67514875 GCACTATGTGTGCCAGATCAGTAGTTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
* ** *
67514904 GCACTATGTGTACGAG-TTCTTCAATCGA-
1 GCACTATGTGTGCGAGATTAGT-AATTGAG
* *
67514932 GCACTATCTGTGCGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
*
67514961 GCACTATATGTGCGAG
1 GCACTATGTGTGCGAG
67514977 TTCTTTAATC
Statistics
Matches: 57, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
28 21 0.37
29 36 0.63
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATTAGTAATTGAG
Found at i:67514985 original size:29 final size:29
Alignment explanation
Indices: 67514899--67514985 Score: 88
Period size: 29 Copynumber: 3.0 Consensus size: 29
67514889 AGATCAGTAG
* * *
67514899 TTGAGGCACTATGTGTACGAGTTCTTCAA
1 TTGAGGCACTATATGTGCGAGTTCTTTAA
* * **
67514928 TCGA-GCACTATCTGTGCGAGATT-GGTAA
1 TTGAGGCACTATATGTGCGAG-TTCTTTAA
67514956 TTGAGGCACTATATGTGCGAGTTCTTTAA
1 TTGAGGCACTATATGTGCGAGTTCTTTAA
67514985 T
1 T
67514986 CGAGCGCTAT
Statistics
Matches: 45, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
28 21 0.47
29 24 0.53
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.34
Consensus pattern (29 bp):
TTGAGGCACTATATGTGCGAGTTCTTTAA
Found at i:67516474 original size:52 final size:51
Alignment explanation
Indices: 67516417--67516518 Score: 177
Period size: 52 Copynumber: 2.0 Consensus size: 51
67516407 ATATAAAGTT
*
67516417 ATCTAATAGAGCATGTATTAAAAAATGTGGGCTTGCATGTCAAATTACCCAG
1 ATCTAATAGAGCATATATTAAAAAATGTGGGCTTGCATGTCAAATT-CCCAG
*
67516469 ATCTAATAGAGCATATATTCAAAAATGTGGGCTTGCATGTCAAATTCCCA
1 ATCTAATAGAGCATATATTAAAAAATGTGGGCTTGCATGTCAAATTCCCA
67516519 CTTTTGAGAT
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
51 4 0.08
52 44 0.92
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (51 bp):
ATCTAATAGAGCATATATTAAAAAATGTGGGCTTGCATGTCAAATTCCCAG
Found at i:67522936 original size:28 final size:28
Alignment explanation
Indices: 67522870--67522997 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
67522860 CATGAGATTG
* * **
67522870 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
67522899 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
67522927 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
67522956 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
67522984 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
67522998 GACTTACTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.51
29 44 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:67522959 original size:57 final size:57
Alignment explanation
Indices: 67522870--67522997 Score: 186
Period size: 57 Copynumber: 2.2 Consensus size: 57
67522860 CATGAGATTG
*
67522870 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
67522927 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
67522984 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
67522998 GACTTACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:67527196 original size:50 final size:50
Alignment explanation
Indices: 67527118--67527363 Score: 230
Period size: 50 Copynumber: 4.9 Consensus size: 50
67527108 TAAGACGGTT
* *
67527118 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTAGATTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTG
** * * *
67527168 TTAGGTTGCATGTGTAGTACTAAATGCAGGCTACTATGCATACCCA-ATAG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CCAGATTG
*** * * * *** *
67527218 CTTCTATAACGTGTGTAGTACTAAGTGCAGGCTATTACATGTATCC-GATGG
1 -TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CCAGATTG
* * *
67527269 TTAGGTCACGTGTGTAGTACCAAGTGCAGGCTACTA--CGTACCAAATTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTG
** *
67527317 TTAGGTCGTATGTGTAGTACTAAATGCAGGCTACTATGCGTACCAGA
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
67527364 GAGCTTTGGT
Statistics
Matches: 154, Mismatches: 36, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
47 2 0.01
48 37 0.24
50 78 0.51
51 37 0.24
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.31
Consensus pattern (50 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTG
Found at i:67530965 original size:310 final size:310
Alignment explanation
Indices: 67530403--67531012 Score: 1139
Period size: 310 Copynumber: 2.0 Consensus size: 310
67530393 TTTGTCAAAT
67530403 TCTCCCATGTTACAGGGATCGACTACACTGACCTTTGCGCATTACAACTTGGATATCTCCCTGTA
1 TCTCCCATGTTACAGGGATCGACTACACTGACCTTTGCGCATTACAACTTGGATATCTCCCTGTA
67530468 CAGGGCTTCAATACTGATTTCGTTTGTTTCTATAGAAACTAGACTCAAAGAGGAATCTATAAATA
66 CAGGGCTTCAATACTGATTTCGTTTGTTTCTATAGAAACTAGACTCAAAGAGGAATCTATAAATA
* *
67530533 TATGGCATGACTCCTAATTATCTCTGGTTAATTTATAATGAATTTCTAAAGTCGAAACATGGAAT
131 TATGGCATGACTCCTAATTATCTCTGGTTAATTTATAATGAATTTCCAAAGTCGAAACAGGGAAT
*
67530598 CCAGAAACCGTTCTGGCCCTGTCTTACGAGAACCTGAATATCTCTTAACATACTGTCCATATGAT
196 CCAGAAACCGTTCTGGCCCTGTCTCACGAGAACCTGAATATCTCTTAACATACTGTCCATATGAT
67530663 CGTTTCGTTACTTTCCTATGAAAATAGATTCATCAAGGTTCATTTAAAAG
261 CGTTTCGTTACTTTCCTATGAAAATAGATTCATCAAGGTTCATTTAAAAG
67530713 TCTCCCATGTTACAGGGATCGACTACACTGACCTTTGCGCATTACAACTTGGATATCTCCCTGTA
1 TCTCCCATGTTACAGGGATCGACTACACTGACCTTTGCGCATTACAACTTGGATATCTCCCTGTA
67530778 CAGGGCTTCAATACTGATTTCGTTTGTTTCTATAGAAACTAGACTCAAAGAGGAATCTATAAATA
66 CAGGGCTTCAATACTGATTTCGTTTGTTTCTATAGAAACTAGACTCAAAGAGGAATCTATAAATA
* * *
67530843 TATGGCATGACTCCTAATTATCTTTGTTTAATTTATAATGAATTTCCAAAGTCGGAACAGGGAAT
131 TATGGCATGACTCCTAATTATCTCTGGTTAATTTATAATGAATTTCCAAAGTCGAAACAGGGAAT
*
67530908 CCAGAAACCGTTCTGGCCCTGTCTCACGAGAACCTGAATATCTCTTAACATACTGTCCGTATGAT
196 CCAGAAACCGTTCTGGCCCTGTCTCACGAGAACCTGAATATCTCTTAACATACTGTCCATATGAT
* *
67530973 TGTTTCGTTACTTTCCTATGAAAGTAGATTCATCAAGGTT
261 CGTTTCGTTACTTTCCTATGAAAATAGATTCATCAAGGTT
67531013 TGTTTACATA
Statistics
Matches: 291, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
310 291 1.00
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (310 bp):
TCTCCCATGTTACAGGGATCGACTACACTGACCTTTGCGCATTACAACTTGGATATCTCCCTGTA
CAGGGCTTCAATACTGATTTCGTTTGTTTCTATAGAAACTAGACTCAAAGAGGAATCTATAAATA
TATGGCATGACTCCTAATTATCTCTGGTTAATTTATAATGAATTTCCAAAGTCGAAACAGGGAAT
CCAGAAACCGTTCTGGCCCTGTCTCACGAGAACCTGAATATCTCTTAACATACTGTCCATATGAT
CGTTTCGTTACTTTCCTATGAAAATAGATTCATCAAGGTTCATTTAAAAG
Found at i:67531861 original size:40 final size:40
Alignment explanation
Indices: 67531817--67532078 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
67531807 GCTCCTCGTT
* *
67531817 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
67531857 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
67531897 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
67531936 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
67531975 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
67532014 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
67532055 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67532079 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:67539649 original size:29 final size:29
Alignment explanation
Indices: 67539607--67539678 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
67539597 TTGGGTTTCA
* *
67539607 GCACTAAGTGTGCGGGCTTGAAA-TGCATG
1 GCACTAAGTGTGCGAG-TTGAAAGTACATG
*
67539636 GCACTAAGTGTGCGAGTTTAAAGTACATG
1 GCACTAAGTGTGCGAGTTGAAAGTACATG
67539665 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
67539679 TGGTTGATTA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
28 5 0.13
29 34 0.87
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTGAAAGTACATG
Found at i:67540110 original size:40 final size:40
Alignment explanation
Indices: 67539987--67540222 Score: 199
Period size: 40 Copynumber: 5.9 Consensus size: 40
67539977 TCGAATGATG
* ** *
67539987 TCCGAGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
** * ** * * *
67540027 TCCGAACTAAGACCCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TATA
*
67540067 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
67540107 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** * * * *
67540147 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTTTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
67540187 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTAGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
67540223 CGTGTATTCG
Statistics
Matches: 158, Mismatches: 36, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
40 140 0.89
41 18 0.11
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:67543371 original size:145 final size:145
Alignment explanation
Indices: 67543173--67543612 Score: 801
Period size: 145 Copynumber: 3.0 Consensus size: 145
67543163 AACTCAAGGT
*
67543173 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
67543238 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
**
67543303 A-TTTCAAGTTCGCAC
131 ACTTT-AAACTCGCAC
67543318 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
67543383 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACAGTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
67543448 ACTTTAAACTCGCAC
131 ACTTTAAACTCGCAC
67543463 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
67543528 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
67543593 ACTTTAAACTCGCAC
131 ACTTTAAACTCGCAC
67543608 ACTTA
1 ACTTA
67543613 GTGCTGTACA
Statistics
Matches: 287, Mismatches: 7, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
145 284 0.99
146 3 0.01
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.30
Consensus pattern (145 bp):
ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCGCAC
Found at i:67543608 original size:29 final size:30
Alignment explanation
Indices: 67543569--67543647 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
67543559 CTTAATAATC
67543569 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
67543599 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
67543628 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
67543648 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:67546149 original size:52 final size:52
Alignment explanation
Indices: 67546062--67546165 Score: 165
Period size: 52 Copynumber: 2.0 Consensus size: 52
67546052 TTTGAAGTCT
* *
67546062 GTTAACACCTCGTGTTCGACTCCGGCGACAGTCTCGGGTTCGGGGTGTTACA
1 GTTAACACCTCGTGTTCGACTCCGGCAACAGTCTCGGGTACGGGGTGTTACA
*
67546114 GTTAGCACCTCGTGTTCGACTCCGGCAAC-GATCTCGGGTACGGGGTGTTACA
1 GTTAACACCTCGTGTTCGACTCCGGCAACAG-TCTCGGGTACGGGGTGTTACA
67546166 ATTTTATTGG
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
51 1 0.02
52 47 0.98
ACGTcount: A:0.16, C:0.27, G:0.31, T:0.26
Consensus pattern (52 bp):
GTTAACACCTCGTGTTCGACTCCGGCAACAGTCTCGGGTACGGGGTGTTACA
Found at i:67546514 original size:28 final size:28
Alignment explanation
Indices: 67546474--67546529 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
67546464 GCAATTTTGA
67546474 AAGAGTGTTACAACTGTAAATGTGATCT
1 AAGAGTGTTACAACTGTAAATGTGATCT
67546502 AAGAGTGTTACAACTGTAAATGTGATCT
1 AAGAGTGTTACAACTGTAAATGTGATCT
67546530 TTGTATATGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (28 bp):
AAGAGTGTTACAACTGTAAATGTGATCT
Found at i:67546974 original size:40 final size:40
Alignment explanation
Indices: 67546661--67546962 Score: 469
Period size: 40 Copynumber: 7.5 Consensus size: 40
67546651 AGTTGTATAG
*
67546661 CCGGGCTAAGTCCCGAAGAGCATTCGAGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
67546701 CCGGGTTAAGTCCCGAAGAGCATTCGTGCTAGTTATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
67546741 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAA
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
67546781 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
67546821 CCGGGTTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
* * *
67546861 CTGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
* ** * * *
67546901 CCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
67546941 CCGGGCTAGGTCCCGAAGAGCA
1 CCGGGCTAAGTCCCGAAGAGCA
67546963 ATCATGCTGG
Statistics
Matches: 239, Mismatches: 23, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 239 1.00
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
Found at i:67547188 original size:25 final size:25
Alignment explanation
Indices: 67547138--67547188 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
67547128 TGTGTAACAA
* *
67547138 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
67547163 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
67547188 C
1 C
67547189 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:67549488 original size:13 final size:13
Alignment explanation
Indices: 67549470--67549513 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
67549460 CGAATGGCTA
67549470 ATGTGAAATATAT
1 ATGTGAAATATAT
*
67549483 ATGTGAAATATGT
1 ATGTGAAATATAT
* * *
67549496 ATGAGATATGTAT
1 ATGTGAAATATAT
67549509 ATGTG
1 ATGTG
67549514 GTAAAGCCGA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.39, C:0.00, G:0.23, T:0.39
Consensus pattern (13 bp):
ATGTGAAATATAT
Found at i:67549517 original size:61 final size:61
Alignment explanation
Indices: 67549422--67549556 Score: 247
Period size: 61 Copynumber: 2.2 Consensus size: 61
67549412 CGAATGGCGA
67549422 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATAT
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATAT
67549483 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATAT
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATAT
*
67549544 GTGTG--ATATGTAT
1 ATGTGAAATATGTAT
67549557 ATGTGGTAAA
Statistics
Matches: 73, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
59 8 0.11
61 65 0.89
ACGTcount: A:0.36, C:0.04, G:0.25, T:0.34
Consensus pattern (61 bp):
ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATAT
Found at i:67549538 original size:48 final size:48
Alignment explanation
Indices: 67549483--67549816 Score: 479
Period size: 48 Copynumber: 7.0 Consensus size: 48
67549473 TGAAATATAT
* * *
67549483 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
1 ATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTA
*
67549531 ATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATAGCTA
1 ATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTA
* * *
67549579 ATGTGAAAAATATGTGTGATATGTATATGTGGTAAAGCCAAATGGCCA
1 ATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTA
* * * *
67549627 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCAAATGGCTA
1 ATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTA
* * *
67549675 ATGTGAAATATATGTGTGATATGTATATGTGGTATAGACGAATGGCGA
1 ATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTA
* * * * *
67549723 ATGTAAAATATGTATGAGATATGTATATGTGGTAAAGTCGAATGGCTA
1 ATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTA
**
67549771 ATGTGAAATATATGTGTGATATGTATATGTGGCGAAGCCGAATGGC
1 ATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGC
67549817 GNNNNNNNNN
Statistics
Matches: 252, Mismatches: 34, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 252 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTA
Found at i:67554696 original size:30 final size:30
Alignment explanation
Indices: 67554662--67554722 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
67554652 TCCTTAACTC
67554662 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
67554692 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
67554722 A
1 A
67554723 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:67556168 original size:29 final size:30
Alignment explanation
Indices: 67556164--67556229 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 30
67556154 GCCCAGTTCA
*
67556164 TATTCTTATGGCCCACTAGGCCCAATTCAC
1 TATTCATATGGCCCACTAGGCCCAATTCAC
* * *
67556194 T-TTCATATGGCCTATTAGGCCCAAATCA-
1 TATTCATATGGCCCACTAGGCCCAATTCAC
67556222 TATT-ATAT
1 TATTCATAT
67556230 TCATGCTCCC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
28 5 0.16
29 25 0.81
30 1 0.03
ACGTcount: A:0.27, C:0.26, G:0.12, T:0.35
Consensus pattern (30 bp):
TATTCATATGGCCCACTAGGCCCAATTCAC
Found at i:67559415 original size:17 final size:18
Alignment explanation
Indices: 67559393--67559427 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
67559383 TTACATTGAA
67559393 GTGTTTT-AGTGAAAACC
1 GTGTTTTCAGTGAAAACC
*
67559410 GTGTTTTCATTGAAAACC
1 GTGTTTTCAGTGAAAACC
67559428 CTTCTTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (18 bp):
GTGTTTTCAGTGAAAACC
Found at i:67560518 original size:29 final size:29
Alignment explanation
Indices: 67560476--67560537 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 29
67560466 TGACCCACTA
* *
67560476 GGCCCATCTAGCCCAGTTCA-TATTCTTAT
1 GGCCCATCTAGCCCAATTCACT-TTCATAT
67560505 GGCCCA-CTAGGCCCAATTCACTTTCATAT
1 GGCCCATCTA-GCCCAATTCACTTTCATAT
67560534 GGCC
1 GGCC
67560538 TATTAGGCTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 3 0.10
29 25 0.86
30 1 0.03
ACGTcount: A:0.21, C:0.34, G:0.16, T:0.29
Consensus pattern (29 bp):
GGCCCATCTAGCCCAATTCACTTTCATAT
Found at i:67562019 original size:8 final size:8
Alignment explanation
Indices: 67562008--67562035 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
67561998 AATTTTAAAT
67562008 TTTTGGGA
1 TTTTGGGA
67562016 TTTTGGGA
1 TTTTGGGA
67562024 TTTTGGGA
1 TTTTGGGA
67562032 TTTT
1 TTTT
67562036 TTGGGCGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.32, T:0.57
Consensus pattern (8 bp):
TTTTGGGA
Found at i:67564927 original size:29 final size:30
Alignment explanation
Indices: 67564923--67564988 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 30
67564913 GCCCAGTTCA
*
67564923 TATTCTTATGGCCCACTAGGCCCAATTCAC
1 TATTCATATGGCCCACTAGGCCCAATTCAC
* * *
67564953 T-TTCATATGGCCAATTAGGCCCAAATCA-
1 TATTCATATGGCCCACTAGGCCCAATTCAC
67564981 TATT-ATAT
1 TATTCATAT
67564989 TCATGCCCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
28 5 0.16
29 25 0.81
30 1 0.03
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (30 bp):
TATTCATATGGCCCACTAGGCCCAATTCAC
Found at i:67579903 original size:30 final size:29
Alignment explanation
Indices: 67579859--67579915 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
67579849 AGAAGTTTTA
*
67579859 GCACTGAGTGTGCGATTTAAACTAGCTTTG
1 GCACTAAGTGTGCGATTT-AACTAGCTTTG
*
67579889 GCACTAAGTTTGCGATTTAACTAGCTT
1 GCACTAAGTGTGCGATTTAACTAGCTT
67579916 CGGCTATTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 9 0.36
30 16 0.64
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.35
Consensus pattern (29 bp):
GCACTAAGTGTGCGATTTAACTAGCTTTG
Found at i:67580233 original size:129 final size:129
Alignment explanation
Indices: 67580003--67580260 Score: 516
Period size: 129 Copynumber: 2.0 Consensus size: 129
67579993 TTAGCTTCGG
67580003 TTAACCTTATAGCGCTAAGTGTGCTGATATATAAAATACAAATAACTTATGGAAAGTCTTATAAC
1 TTAACCTTATAGCGCTAAGTGTGCTGATATATAAAATACAAATAACTTATGGAAAGTCTTATAAC
67580068 ATTCAACATGAGGTAAGTACAAAAGTGAATAAGTAGAGGAAGCTTCAGGTATGTACATTGCCTA
66 ATTCAACATGAGGTAAGTACAAAAGTGAATAAGTAGAGGAAGCTTCAGGTATGTACATTGCCTA
67580132 TTAACCTTATAGCGCTAAGTGTGCTGATATATAAAATACAAATAACTTATGGAAAGTCTTATAAC
1 TTAACCTTATAGCGCTAAGTGTGCTGATATATAAAATACAAATAACTTATGGAAAGTCTTATAAC
67580197 ATTCAACATGAGGTAAGTACAAAAGTGAATAAGTAGAGGAAGCTTCAGGTATGTACATTGCCTA
66 ATTCAACATGAGGTAAGTACAAAAGTGAATAAGTAGAGGAAGCTTCAGGTATGTACATTGCCTA
67580261 AGTGGTAGAC
Statistics
Matches: 129, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
129 129 1.00
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.29
Consensus pattern (129 bp):
TTAACCTTATAGCGCTAAGTGTGCTGATATATAAAATACAAATAACTTATGGAAAGTCTTATAAC
ATTCAACATGAGGTAAGTACAAAAGTGAATAAGTAGAGGAAGCTTCAGGTATGTACATTGCCTA
Found at i:67580783 original size:15 final size:15
Alignment explanation
Indices: 67580760--67580794 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
67580750 TAGAATGCAT
*
67580760 GGTAATAAACACACG
1 GGTAGTAAACACACG
67580775 GGTAGTAAACACACG
1 GGTAGTAAACACACG
67580790 GGTAG
1 GGTAG
67580795 AGACACGGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.40, C:0.17, G:0.29, T:0.14
Consensus pattern (15 bp):
GGTAGTAAACACACG
Found at i:67583089 original size:30 final size:30
Alignment explanation
Indices: 67583053--67583114 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
67583043 TTAGCCCTGC
*
67583053 ATGATGTAATTGTAAACTGTTGTAGTAAGT
1 ATGATGTAATTGTAAACTGTGGTAGTAAGT
67583083 ATGATGTAATTGTAAACTGTGGTAGTAAGT
1 ATGATGTAATTGTAAACTGTGGTAGTAAGT
67583113 AT
1 AT
67583115 ATTGAACTGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.34, C:0.03, G:0.24, T:0.39
Consensus pattern (30 bp):
ATGATGTAATTGTAAACTGTGGTAGTAAGT
Found at i:67591621 original size:268 final size:268
Alignment explanation
Indices: 67591128--67591660 Score: 958
Period size: 268 Copynumber: 2.0 Consensus size: 268
67591118 CGCTCGCAAA
*
67591128 GCAAACAGTGATTTTCGGCTTAAGGCGTCCGCAACCACATTAGCCTTTCCCGGGTGGTAATCAAT
1 GCAAACAGCGATTTTCGGCTTAAGGCGTCCGCAACCACATTAGCCTTTCCCGGGTGGTAATCAAT
67591193 GACAAGCTCGTAATCTTTCAACAACTCAAGCCAACGTCTTTGTCGCAGATTCAAGTCTCGTTGAG
66 GACAAGCTCGTAATCTTTCAACAACTCAAGCCAACGTCTTTGTCGCAGATTCAAGTCTCGTTGAG
*
67591258 TCATCAAATATTTGAGACTTTTGTGATCCGAAAACACATGGCACTTCTCACCAAACAAATACTGT
131 TCATCAAATATTTGAGACTTTTGTGATCCGAAAACACATGGCACTTCTCACCAAACAAATAATGT
*
67591323 CGCCATATTTTCAATGCAAACACAATGGCGGCTAGTTCGACATCATGGGTCGGATAATTTCTCTC
196 CGCCATATTTTCAAAGCAAACACAATGGCGGCTAGTTCGACATCATGGGTCGGATAATTTCTCTC
67591388 GTGTGGAG
261 GTGTGGAG
67591396 GCAAACAGCGATTTTCGGCTTAAGGCGTCCGCAACCACATTAGCCTTTCCCGGGTGGTAATCAAT
1 GCAAACAGCGATTTTCGGCTTAAGGCGTCCGCAACCACATTAGCCTTTCCCGGGTGGTAATCAAT
* *
67591461 GACAAGCTCGTAATCTTTCAACAACTCAAGCCAACGTCTTTGTCGCAGATTTAAGTCTCTTTGAG
66 GACAAGCTCGTAATCTTTCAACAACTCAAGCCAACGTCTTTGTCGCAGATTCAAGTCTCGTTGAG
* * *
67591526 TCATCAAATATTTGAGACTTTTGTGATCCGAAAATACATGGCACTTTTCGCCAAACAAATAATGT
131 TCATCAAATATTTGAGACTTTTGTGATCCGAAAACACATGGCACTTCTCACCAAACAAATAATGT
* * * *
67591591 CGCCATATTTTCAAAGCAAATACGATGGCGGCTAGTTCGAGATCATGGGTTGGATAATTTCTCTC
196 CGCCATATTTTCAAAGCAAACACAATGGCGGCTAGTTCGACATCATGGGTCGGATAATTTCTCTC
67591656 GTGTG
261 GTGTG
67591661 TCTTCAATTG
Statistics
Matches: 253, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
268 253 1.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (268 bp):
GCAAACAGCGATTTTCGGCTTAAGGCGTCCGCAACCACATTAGCCTTTCCCGGGTGGTAATCAAT
GACAAGCTCGTAATCTTTCAACAACTCAAGCCAACGTCTTTGTCGCAGATTCAAGTCTCGTTGAG
TCATCAAATATTTGAGACTTTTGTGATCCGAAAACACATGGCACTTCTCACCAAACAAATAATGT
CGCCATATTTTCAAAGCAAACACAATGGCGGCTAGTTCGACATCATGGGTCGGATAATTTCTCTC
GTGTGGAG
Found at i:67592189 original size:48 final size:48
Alignment explanation
Indices: 67592095--67592189 Score: 163
Period size: 48 Copynumber: 2.0 Consensus size: 48
67592085 CTTACTGAAC
*
67592095 TTAGCATATAACTGCTTATCCCGCAAAATTTGCAACACTAGCCTCAGA
1 TTAGCATATAACTGCTTATCCCGCAAAATTTGCAACACTAACCTCAGA
* *
67592143 TTAGCATATAACTTCTTATCCCGCAAAATTTGCAACACTAATCTCAG
1 TTAGCATATAACTGCTTATCCCGCAAAATTTGCAACACTAACCTCAG
67592190 GTGCTCAGCA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.29
Consensus pattern (48 bp):
TTAGCATATAACTGCTTATCCCGCAAAATTTGCAACACTAACCTCAGA
Found at i:67596090 original size:27 final size:27
Alignment explanation
Indices: 67596060--67596237 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
67596050 ATATTGAGTC
* * * *
67596060 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
67596087 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
67596114 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
67596142 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
67596169 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
67596196 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
67596223 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67596238 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:67596199 original size:82 final size:81
Alignment explanation
Indices: 67596081--67596236 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
67596071 TGCTATATAA
* *
67596081 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
67596146 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
67596163 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
67596227 CACTTAGTGC
65 CACTTAGTGC
67596237 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:67606798 original size:43 final size:43
Alignment explanation
Indices: 67606737--67606877 Score: 228
Period size: 43 Copynumber: 3.3 Consensus size: 43
67606727 GCTGGTATTA
* *
67606737 TATTCGGGCCTTCGTGCCTAGCATGCTTTGTGCCGGTGATGTG
1 TATTCGGGCCTTCATGCCTAGCAGGCTTTGTGCCGGTGATGTG
*
67606780 TATTCGGGCCTTCATGCCTAGCAGGCTTTGTGCTGGTGATGTG
1 TATTCGGGCCTTCATGCCTAGCAGGCTTTGTGCCGGTGATGTG
* *
67606823 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCATGCCTAGCAGGCTTTGTGCCGGTGATGTG
*
67606866 TATTCAGGCCTT
1 TATTCGGGCCTT
67606878 TGAGCCTAGC
Statistics
Matches: 91, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 91 1.00
ACGTcount: A:0.11, C:0.23, G:0.32, T:0.34
Consensus pattern (43 bp):
TATTCGGGCCTTCATGCCTAGCAGGCTTTGTGCCGGTGATGTG
Found at i:67610027 original size:47 final size:47
Alignment explanation
Indices: 67609967--67610082 Score: 196
Period size: 47 Copynumber: 2.5 Consensus size: 47
67609957 GCACTATGAC
67609967 AAGGATATCATGTAAGACCATGTTTGGAACATGGAATTTGGTAAGAA
1 AAGGATATCATGTAAGACCATGTTTGGAACATGGAATTTGGTAAGAA
* * * *
67610014 AAGGATACCATGTAATACCATGTTTGGAACATGGCATTTGGTAAGAT
1 AAGGATATCATGTAAGACCATGTTTGGAACATGGAATTTGGTAAGAA
67610061 AAGGATATCATGTAAGACCATG
1 AAGGATATCATGTAAGACCATG
67610083 CCAAGGCATG
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 63 1.00
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.28
Consensus pattern (47 bp):
AAGGATATCATGTAAGACCATGTTTGGAACATGGAATTTGGTAAGAA
Found at i:67610125 original size:54 final size:54
Alignment explanation
Indices: 67610061--67610227 Score: 209
Period size: 54 Copynumber: 3.1 Consensus size: 54
67610051 TTGGTAAGAT
* * *
67610061 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGAAATCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
*
67610115 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGG-
1 AAGGAAATCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
*
67610169 AA--AAAGTCCCATGTAAGACCATGCCAAGTCATGGCATT-AGTGAGTTC-ATAAGGC
1 AAGGAAA-T--CATGTAAGACCATGCCAAGACATGGCATTGA-TGAGTTCTATAAGGC
67610223 AAGGA
1 AAGGA
67610228 TACGACACAA
Statistics
Matches: 99, Mismatches: 6, Indels: 14
0.83 0.05 0.12
Matches are distributed among these distances:
52 3 0.03
53 7 0.07
54 47 0.47
55 41 0.41
56 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (54 bp):
AAGGAAATCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:67613277 original size:15 final size:15
Alignment explanation
Indices: 67613253--67613282 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
67613243 CTCTGACTCT
67613253 TTGGTCTTAAGAATG
1 TTGGTCTTAAGAATG
*
67613268 TTGGTTTTAAGAATG
1 TTGGTCTTAAGAATG
67613283 AGTGATTGCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.03, G:0.27, T:0.43
Consensus pattern (15 bp):
TTGGTCTTAAGAATG
Found at i:67616855 original size:47 final size:47
Alignment explanation
Indices: 67616795--67616916 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
67616785 GCATTGGAAC
67616795 TAAGACAAGGATACCATGTAAGACCATGTTTCGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTCGAACATGGCATTTGG
* *
67616842 TAAGACAAAGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTCGAACATGGCATTTGG
* *
67616889 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
67616917 CCAAGGCATG
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.37, C:0.15, G:0.23, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTCGAACATGGCATTTGG
Found at i:67616960 original size:54 final size:54
Alignment explanation
Indices: 67616902--67617061 Score: 209
Period size: 55 Copynumber: 3.0 Consensus size: 54
67616892 GATAAGGATA
* *
67616902 TCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTCTAAGGCAAGGAAG
1 TCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGCAAGGAAG
* * * *
67616956 TCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATATGGCAA--AGG
1 TCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGGCAAGGAAG
*
67617009 TCCTATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGA
1 T-C-ATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGCAAGGA
67617062 TACGACACAA
Statistics
Matches: 91, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
53 11 0.12
54 37 0.41
55 43 0.47
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (54 bp):
TCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGCAAGGAAG
Found at i:67618765 original size:79 final size:77
Alignment explanation
Indices: 67618663--67618885 Score: 238
Period size: 79 Copynumber: 2.8 Consensus size: 77
67618653 GCTCCTCGTT
* *
67618663 CAAATGCCTTCGGGACATAGCCCGGTTATATTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATATTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
67618728 ATTTAATAACTCGCA
64 ATTT-ATAACTCGCA
* * *
67618743 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TATTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG-
* *
67618807 ATTTGTATCTCGCA
64 ATTTATAACTCGCA
* * * *
67618821 CAAATGCCTTCGGATCTTAGTCCGG-ATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGG-GCTTAGCCCGGTATA-T-TAAC-TCGCACAAATGCCTTCGGGACTTAGCCC
67618883 GGA
62 GGA
67618886 CATCATTCAA
Statistics
Matches: 123, Mismatches: 13, Indels: 16
0.81 0.09 0.11
Matches are distributed among these distances:
77 2 0.02
78 42 0.34
79 60 0.49
80 19 0.15
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (77 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATATTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
TTATAACTCGCA
Found at i:67618780 original size:39 final size:40
Alignment explanation
Indices: 67618663--67618885 Score: 253
Period size: 39 Copynumber: 5.7 Consensus size: 40
67618653 GCTCCTCGTT
* * *
67618663 CAAATGCCTTCGGGACATAGCCCGG-TTATATTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * *
67618703 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
67618743 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* *
67618782 CAAATGCCTTCGGG-CTTAGCCCGGAATTTGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
67618821 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
67618862 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67618886 CATCATTCAA
Statistics
Matches: 164, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
38 2 0.01
39 86 0.52
40 66 0.40
41 10 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:67619194 original size:39 final size:39
Alignment explanation
Indices: 67619140--67619217 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
67619130 CTTCCCTTTA
*
67619140 TCGGATTTAGTTCCCCTTTGCTCTTGAGCTTCATTAAAC
1 TCGGATTTAGTTCCCCTTTGCTCTTGAGCTTAATTAAAC
67619179 TCGGATTTAGTTCCCCTTTGCTCTTGAGCTTAATTAAAC
1 TCGGATTTAGTTCCCCTTTGCTCTTGAGCTTAATTAAAC
67619218 AAATAAATTG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.19, C:0.24, G:0.15, T:0.41
Consensus pattern (39 bp):
TCGGATTTAGTTCCCCTTTGCTCTTGAGCTTAATTAAAC
Found at i:67621135 original size:176 final size:176
Alignment explanation
Indices: 67620929--67621580 Score: 789
Period size: 176 Copynumber: 3.7 Consensus size: 176
67620919 CTTGGGGCTT
* * * *
67620929 AAATCTGCTCCATTGCCGATACAAGGAGATAAGATTCGCC-TCTTTCGATCTACTCTGATTCTGT
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATC-TTCGATCTACTCTGATACTGC
* * ** * *
67620993 TTAGGGAGATAAGATCTTCAATCTTTAGCCTGCTTTTTTGCTGCCTCAGAAAGATAAGACTACAA
65 TTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAA
* *
67621058 TCGCCAACCTACTCTCTTGCTACCTTAAAGAGATAAGGCTAGTGGTA
130 TCGCCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTAGTGGTA
* * *
67621105 AAATCTGCTCCATTGCCGATACATGGAGATAAAATTCACCATCTTCGATTTGA-TCCT-CTACTG
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTTCGATCT-ACT-CTGATACTG
* * * * *
67621168 CTTAGAGATATAAAATCTTCAATTTTCAGTCTGCTTCCTTGCTACCTCAGGAATATAAGACT-CA
64 CTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACA
* ** *
67621232 TTCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGACTAGTGGTA
129 ATCGCCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTAGTGGTA
* * * * *
67621280 AAATATGCTCCATTGCCAATACATGGGGATAAGATTCACCATCTTCGATCTGCTC-CACTACTGC
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTTCGATCTACTCTGA-TACTGC
*
67621344 TTAGGGAAAT-AGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAA
65 TTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAA
* *
67621408 TCGCCAACTTGCTCTCTTGCTACCACAAAGAGATAAGG-TCAGTGGCTA
130 TCGCCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCT-AGTGG-TA
* * * * * * *
67621456 AAATCTACTCCATTGCTGATACATGGAGATAAGATTCGCTATCTTCGATCTGCTCTGCTACTTCT
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTTCGATCTACTCTGATACTGCT
* * * * *
67621521 TAGGGAGATAAGATATTCAATCTTCAGTCTGC-TCCACTGCAACCTTAGGGAGATAAGACT
66 TAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCC-TTGCTACCTCAGGAAGATAAGACT
67621581 TGCATATTGA
Statistics
Matches: 406, Mismatches: 58, Indels: 23
0.83 0.12 0.05
Matches are distributed among these distances:
174 49 0.12
175 145 0.36
176 166 0.41
177 46 0.11
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.31
Consensus pattern (176 bp):
AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTTCGATCTACTCTGATACTGCT
TAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAAT
CGCCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTAGTGGTA
Found at i:67621579 original size:351 final size:351
Alignment explanation
Indices: 67620929--67621580 Score: 866
Period size: 351 Copynumber: 1.9 Consensus size: 351
67620919 CTTGGGGCTT
* * * * * *
67620929 AAATCTGCTCCATTGCCGATACAAGGAGATAAGATTCGCCTCTTTCGATCTACTCTGATTCTGTT
1 AAATATGCTCCATTGCCAATACAAGGAGATAAGATTCACCTCTTTCGATCTACTCTCATACTGCT
* * ** *
67620994 TAGGGAGATAAGATCTTCAATCTTTAGCCTGCTTTTTTGCTGCCTCAGAAAGATAAGACTACAAT
66 TAGGGAAATAAGATCTTCAATCTTCAGCCTGCTTCCTTGCTACCTCAGAAAGATAAGACTACAAT
** *
67621059 CGCCAACCTACTCTCTTGCTACCTTAAAGAGATAAGGCTAGTGGTAAAATCTGCTCCATTGCCGA
131 CGCCAACCTACTCTCTTGCTACCACAAAGAGATAAGGCTAGTGGTAAAATCTACTCCATTGCCGA
* * *
67621124 TACATGGAGATAAAATTCACCATCTTCGATTTGATCCTCTACTGCTTAGAGATATAAAATCTTCA
196 TACATGGAGATAAAATTCACCATCTTCGATCTGATCCTCTACTGCTTAGAGAGATAAAATATTCA
* * * *
67621189 ATTTTCAGTCTGCTTCCTTGCTACCTCAGGAATATAAGACTCATTCTTCAACCTGCTCTCTTGCT
261 ATCTTCAGTCTGCTTCCCTGCAACCTCAGGAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCT
67621254 ACCTCAAAGAGATAAGACTAGTGGTA
326 ACCTCAAAGAGATAAGACTAGTGGTA
* * *
67621280 AAATATGCTCCATTGCCAATACATGGGGATAAGATTCACCATC-TTCGATCTGCTC-CACTACTG
1 AAATATGCTCCATTGCCAATACAAGGAGATAAGATTCACC-TCTTTCGATCTACTCTCA-TACTG
* *
67621343 CTTAGGGAAAT-AGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACA
64 CTTAGGGAAATAAGATCTTCAATCTTCAGCCTGCTTCCTTGCTACCTCAGAAAGATAAGACTACA
* *
67621407 ATCGCCAACTTGCTCTCTTGCTACCACAAAGAGATAAGG-TCAGTGGCTAAAATCTACTCCATTG
129 ATCGCCAACCTACTCTCTTGCTACCACAAAGAGATAAGGCT-AGTGG-TAAAATCTACTCCATTG
* * * * * * * *
67621471 CTGATACATGGAGATAAGATTCGCTATCTTCGATCTGCT-CTGCTACTTCTTAGGGAGATAAGAT
192 CCGATACATGGAGATAAAATTCACCATCTTCGATCTGATCCT-CTACTGCTTAGAGAGATAAAAT
* *
67621535 ATTCAATCTTCAGTCTGC-TCCACTGCAACCTTAGGGAGATAAGACT
256 ATTCAATCTTCAGTCTGCTTCC-CTGCAACCTCAGGAAGATAAGACT
67621581 TGCATATTGA
Statistics
Matches: 257, Mismatches: 38, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
349 1 0.00
350 93 0.36
351 161 0.63
352 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.31
Consensus pattern (351 bp):
AAATATGCTCCATTGCCAATACAAGGAGATAAGATTCACCTCTTTCGATCTACTCTCATACTGCT
TAGGGAAATAAGATCTTCAATCTTCAGCCTGCTTCCTTGCTACCTCAGAAAGATAAGACTACAAT
CGCCAACCTACTCTCTTGCTACCACAAAGAGATAAGGCTAGTGGTAAAATCTACTCCATTGCCGA
TACATGGAGATAAAATTCACCATCTTCGATCTGATCCTCTACTGCTTAGAGAGATAAAATATTCA
ATCTTCAGTCTGCTTCCCTGCAACCTCAGGAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCT
ACCTCAAAGAGATAAGACTAGTGGTA
Found at i:67622125 original size:64 final size:64
Alignment explanation
Indices: 67621935--67622126 Score: 321
Period size: 64 Copynumber: 3.0 Consensus size: 64
67621925 TTCATGTATC
* * *
67621935 ATGCTTATGCCAAATAATTAGGATGTTATGATCAAAATGAATCAAATGCTCCTAACTAAATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
*
67621999 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCACCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
** *
67622063 ATGCTTATGTCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTGGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
67622127 TTATGAATGA
Statistics
Matches: 120, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 120 1.00
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.31
Consensus pattern (64 bp):
ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
Found at i:67623788 original size:28 final size:29
Alignment explanation
Indices: 67623752--67623814 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
67623742 TCACTATGAC
* * *
67623752 CTTTGTTCTATTGTT-TGCTTTTCCTTTT
1 CTTTTTTCTATCGTTGTACTTTTCCTTTT
**
67623780 CTTTTTTCTATCGTTGTACTTTTGTTTTT
1 CTTTTTTCTATCGTTGTACTTTTCCTTTT
67623809 CTTTTT
1 CTTTTT
67623815 GGACGCCTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 13 0.45
29 16 0.55
ACGTcount: A:0.05, C:0.16, G:0.10, T:0.70
Consensus pattern (29 bp):
CTTTTTTCTATCGTTGTACTTTTCCTTTT
Found at i:67629253 original size:18 final size:19
Alignment explanation
Indices: 67629222--67629257 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
67629212 TTTTAGGGTT
*
67629222 TTTTATTTATTTTTTATTA
1 TTTTATTTAATTTTTATTA
67629241 TTTT-TTTAATTTTTATT
1 TTTTATTTAATTTTTATT
67629258 CTGGTTTTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (19 bp):
TTTTATTTAATTTTTATTA
Found at i:67629648 original size:42 final size:42
Alignment explanation
Indices: 67629537--67629651 Score: 144
Period size: 42 Copynumber: 2.7 Consensus size: 42
67629527 TACCGTACCA
* * *
67629537 ATGCCATATCCTAGATATGGTCTTACATGTAATCTCGTATTG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATTG
* *
67629579 ATGCCAATAGCCCAGCTATGGTCTTACACG-AAGTCTCAT-TTCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGTAA-TCTCATATT-G
67629622 ATGCCATATCCCAGATATGGTCTTACACGT
1 ATGCCATATCCCAGATATGGTCTTACACGT
67629652 TAACTCAATA
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
42 31 0.50
43 31 0.50
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATTG
Found at i:67633398 original size:25 final size:25
Alignment explanation
Indices: 67633302--67633394 Score: 114
Period size: 25 Copynumber: 3.7 Consensus size: 25
67633292 GATACTCCAC
* *
67633302 AGCTCGTGTGAGCATACCAATCTAC
1 AGCTCGTGTGAGCATACCAATTTAT
* *
67633327 ACCTCGTGTGAGCATACCAACTTAT
1 AGCTCGTGTGAGCATACCAATTTAT
* **
67633352 AGCTCGTGAGAGCATACTGATTTAT
1 AGCTCGTGTGAGCATACCAATTTAT
*
67633377 AGCTCGAGTGAGCATACC
1 AGCTCGTGTGAGCATACC
67633395 GATTCACAAC
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 56 1.00
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.26
Consensus pattern (25 bp):
AGCTCGTGTGAGCATACCAATTTAT
Done.