Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 207 of 322
Found at i:68062579 original size:25 final size:25
Alignment explanation
Indices: 68062548--68062618 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
68062538 GAACTAGAAT
* *
68062548 CAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
*
68062573 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
68062598 CAGAATCAAAATCAGAATCAG
1 CAGAATCAGAATCAGAATCAG
68062619 TATCAGCTAA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.46, C:0.15, G:0.20, T:0.18
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:68062611 original size:31 final size:31
Alignment explanation
Indices: 68062576--68062639 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
68062566 TAGGTGACAG
*
68062576 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGCTAACAGAATCAA
68062607 AATCAGAATCAGTATCAGCTAACAGAATCAA
1 AATCAGAATCAGTATCAGCTAACAGAATCAA
68062638 AA
1 AA
68062640 ATCAAAATGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.50, C:0.17, G:0.14, T:0.19
Consensus pattern (31 bp):
AATCAGAATCAGTATCAGCTAACAGAATCAA
Found at i:68062847 original size:26 final size:27
Alignment explanation
Indices: 68062784--68062856 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
68062774 GCTCAGTTAT
* *
68062784 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
*
68062811 CAGATATTGTGGCAGAGCCACTAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
* *
68062837 CAGATAATGTGGCAAAGCCA
1 CAGATATTGTGGCAGAGCCA
68062857 TTTAACAGAA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
26 19 0.46
27 22 0.54
ACGTcount: A:0.37, C:0.19, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:68062871 original size:25 final size:26
Alignment explanation
Indices: 68062835--68062884 Score: 68
Period size: 25 Copynumber: 1.9 Consensus size: 26
68062825 GAGCCACTAG
68062835 AACAGATAATGTGG-CAAAGCCATTT
1 AACAGATAATGTGGACAAAGCCATTT
68062860 AACAGA-ATATGTGGCACAAAGCCAT
1 AACAGATA-ATGTGG-ACAAAGCCAT
68062885 CGATAACTGC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 1 0.05
25 12 0.55
27 9 0.41
ACGTcount: A:0.42, C:0.18, G:0.20, T:0.20
Consensus pattern (26 bp):
AACAGATAATGTGGACAAAGCCATTT
Found at i:68063044 original size:22 final size:22
Alignment explanation
Indices: 68063016--68063079 Score: 76
Period size: 22 Copynumber: 3.0 Consensus size: 22
68063006 GCAAATACAT
*
68063016 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* * *
68063038 TTGGCACAGAGCCAT-ATGAGT
1 TTGGCACAAAGCCATAATCAGG
*
68063059 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
68063080 AAGGCTTTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 17 0.49
22 18 0.51
ACGTcount: A:0.34, C:0.23, G:0.22, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:68063563 original size:27 final size:27
Alignment explanation
Indices: 68063533--68063692 Score: 221
Period size: 27 Copynumber: 5.9 Consensus size: 27
68063523 AGGTATCTCT
* *
68063533 GTAATTCCACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTG
*
68063560 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTTG
* **
68063587 GTAATTCTACCCTACAAGGGTATTCCG
1 GTAATTCTACCCTACAGGGGTATTTTG
68063614 GTAATTCTACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTTG
**
68063641 AAAATTCTACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTTG
* * *
68063668 GTAATTTTACCTTACATGGGTATTT
1 GTAATTCTACCCTACAGGGGTATTT
68063693 CAATAAATTT
Statistics
Matches: 118, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 118 1.00
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTTG
Found at i:68063629 original size:81 final size:81
Alignment explanation
Indices: 68063533--68063691 Score: 248
Period size: 81 Copynumber: 2.0 Consensus size: 81
68063523 AGGTATCTCT
*
68063533 GTAATTCCACCCTACAGGGGTATTTT-AGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC
1 GTAATTCCACCCTACAGGGGTATTTTGA-AAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC
68063597 CCTACAAGGGTATTCCG
65 CCTACAAGGGTATTCCG
* * *
68063614 GTAATTCTACCCTACAGGGGTATTTTGAAAATTCTACCCTACAGGGGTATTTTGGTAATTTTACC
1 GTAATTCCACCCTACAGGGGTATTTTGAAAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
* *
68063679 TTACATGGGTATT
66 CTACAAGGGTATT
68063692 TCAATAAATT
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
81 70 0.99
82 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.35
Consensus pattern (81 bp):
GTAATTCCACCCTACAGGGGTATTTTGAAAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
CTACAAGGGTATTCCG
Found at i:68063734 original size:27 final size:27
Alignment explanation
Indices: 68063704--68063878 Score: 233
Period size: 27 Copynumber: 6.5 Consensus size: 27
68063694 AATAAATTTG
68063704 TAAATCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
* *
68063731 TAAATCGAGGGTAAAACGATAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
* *
68063758 TAAATCGAGGGTAAAACGGTAATTTTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
* * * *
68063785 TTAATCGAGGGTAAAATAGTAATTTTG
1 TAAATCGAGGGTAAAATGGTAATTCTA
* *
68063812 TAAATCGAGGGTAAAATGGTAATTTTG
1 TAAATCGAGGGTAAAATGGTAATTCTA
**
68063839 TAAATAAAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
*
68063866 TAAATCGGGGGTA
1 TAAATCGAGGGTA
68063879 CTTTGGCAAT
Statistics
Matches: 131, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 131 1.00
ACGTcount: A:0.41, C:0.06, G:0.23, T:0.30
Consensus pattern (27 bp):
TAAATCGAGGGTAAAATGGTAATTCTA
Found at i:68063916 original size:27 final size:27
Alignment explanation
Indices: 68063886--68063989 Score: 111
Period size: 27 Copynumber: 3.9 Consensus size: 27
68063876 GTACTTTGGC
*
68063886 AATTTTACAAGTTGAGGGTATTTCAAT
1 AATTTTACAAGTCGAGGGTATTTCAAT
* *
68063913 AATTTTACAGGTCAAGGGTATTTCAAT
1 AATTTTACAAGTCGAGGGTATTTCAAT
* * * *
68063940 AATTTTATAGGTCGAGGGTATTTTAGT
1 AATTTTACAAGTCGAGGGTATTTCAAT
* *
68063967 AATTTCACAAATC-AGTGGTATTT
1 AATTTTACAAGTCGAG-GGTATTT
68063990 TGGTAATATT
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
26 2 0.03
27 63 0.97
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
AATTTTACAAGTCGAGGGTATTTCAAT
Found at i:68063990 original size:27 final size:26
Alignment explanation
Indices: 68063955--68064133 Score: 198
Period size: 27 Copynumber: 6.6 Consensus size: 26
68063945 TATAGGTCGA
*
68063955 GGGTATTTTAGTAATTTCACAAA-TCAG
1 GGGTATTTT-GTAATTTTACAAACT-AG
* *
68063982 TGGTATTTTGGTAATATTACAAACTAG
1 GGGTATTTT-GTAATTTTACAAACTAG
*
68064009 GGGTATTTTGACAATTTTACAAACTAG
1 GGGTATTTTG-TAATTTTACAAACTAG
*
68064036 GGGTATTTTGGAAATTTTACAAACTAG
1 GGGTATTTT-GTAATTTTACAAACTAG
* * *
68064063 GGGTATTTTCGTAATTTTATAAACCAA
1 GGGTATTTT-GTAATTTTACAAACTAG
*
68064090 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTT-GTAATTTTACAAACTAG
68064117 GGGTATTTTGATAATTT
1 GGGTATTTTG-TAATTT
68064134 GGTAAACTAA
Statistics
Matches: 132, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
26 2 0.02
27 128 0.97
28 2 0.02
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (26 bp):
GGGTATTTTGTAATTTTACAAACTAG
Found at i:68066043 original size:6 final size:6
Alignment explanation
Indices: 68066025--68066109 Score: 68
Period size: 6 Copynumber: 13.8 Consensus size: 6
68066015 AAGAAACATT
* *
68066025 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
68066074 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAGT ATCAG
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAG
68066110 GTAACAGAAT
Statistics
Matches: 64, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
5 4 0.06
6 52 0.81
7 6 0.09
8 2 0.03
ACGTcount: A:0.45, C:0.15, G:0.20, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:68066070 original size:31 final size:31
Alignment explanation
Indices: 68066034--68066109 Score: 116
Period size: 31 Copynumber: 2.5 Consensus size: 31
68066024 TATCAGAACT
* *
68066034 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
68066065 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
68066096 AGAATCAGTATCAG
1 AGAATCAGAATCAG
68066110 GTAACAGAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.45, C:0.14, G:0.21, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:68066100 original size:19 final size:19
Alignment explanation
Indices: 68066076--68066119 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
68066066 GAATCAGAAT
68066076 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
68066095 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
68066114 CAGAAT
1 CAGAAT
68066120 AAAAAATCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.43, C:0.16, G:0.20, T:0.20
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:68066332 original size:26 final size:27
Alignment explanation
Indices: 68066269--68066343 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
68066259 ACTCAGTTAT
* * *
68066269 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACTAGATA
68066296 CAGATATTGTGGCAGAGCCACTAGA-A
1 CAGATATTGTGGCAGAGCCACTAGATA
* *
68066322 CAGATAATGTGGCAAAGCCACT
1 CAGATATTGTGGCAGAGCCACT
68066344 TAACAGAATA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 21 0.49
27 22 0.51
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACTAGATA
Found at i:68066358 original size:25 final size:26
Alignment explanation
Indices: 68066295--68066360 Score: 64
Period size: 26 Copynumber: 2.6 Consensus size: 26
68066285 GTCACCAGAT
** *
68066295 ACAGATATTGTGGCAGAGCCACTAGA
1 ACAGATAACGTGGCAAAGCCACTAGA
* *
68066321 ACAGATAATGTGGCAAAGCCACT-TA
1 ACAGATAACGTGGCAAAGCCACTAGA
68066346 ACAGA-ATACGTGGCA
1 ACAGATA-ACGTGGCA
68066361 CAAAGCCATC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
24 1 0.03
25 13 0.37
26 21 0.60
ACGTcount: A:0.38, C:0.20, G:0.24, T:0.18
Consensus pattern (26 bp):
ACAGATAACGTGGCAAAGCCACTAGA
Found at i:68066535 original size:22 final size:22
Alignment explanation
Indices: 68066510--68066565 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
68066500 TTTGGAACAC
* * *
68066510 AGCCATAATCAGGTTGGCATAG
1 AGCCATAATCAGGTTGACACAA
*
68066532 AGCCAT-ATGTAGGTTGACACAA
1 AGCCATAAT-CAGGTTGACACAA
68066554 AGCCATAATCAG
1 AGCCATAATCAG
68066566 AAGGCTTTAA
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
21 2 0.07
22 23 0.85
23 2 0.07
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (22 bp):
AGCCATAATCAGGTTGACACAA
Found at i:68067048 original size:27 final size:27
Alignment explanation
Indices: 68066991--68067238 Score: 273
Period size: 27 Copynumber: 9.2 Consensus size: 27
68066981 AGGGCAAAAT
* * * *
68066991 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
68067017 GGTAATTCCACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
68067044 AGTAATTCTTCCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
68067071 GGTAATTTTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
68067098 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** * *
68067125 GGTAATTCTACCCTGTAGTGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
68067152 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
68067179 GGTAGTTCTACCTTACATGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
68067206 GGTAATTCTACCTTACATGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
68067233 AGTAAT
1 GGTAAT
68067239 ATTGTAAATC
Statistics
Matches: 186, Mismatches: 35, Indels: 1
0.84 0.16 0.00
Matches are distributed among these distances:
26 13 0.07
27 173 0.93
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:68067264 original size:27 final size:27
Alignment explanation
Indices: 68067234--68067376 Score: 178
Period size: 27 Copynumber: 5.3 Consensus size: 27
68067224 GGGTATTTCA
* *
68067234 GTAATATTGTAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAACG
* *
68067261 GTAATTTTATAAATTGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACG
* * *
68067288 ATAATTCTGTAAATCGAGAGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACG
*
68067315 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAACG
* * * *
68067342 GTAATGTTATAAATTGAGGGTAAAAGG
1 GTAATTTTGTAAATCGAGGGTAAAACG
68067369 GTAATTTT
1 GTAATTTT
68067377 ATAATTTAGG
Statistics
Matches: 98, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 98 1.00
ACGTcount: A:0.40, C:0.04, G:0.24, T:0.32
Consensus pattern (27 bp):
GTAATTTTGTAAATCGAGGGTAAAACG
Found at i:68067416 original size:27 final size:27
Alignment explanation
Indices: 68067340--68067699 Score: 244
Period size: 27 Copynumber: 13.3 Consensus size: 27
68067330 GAGGGTAAAA
* * ***
68067340 TGGTAATGTTATAAATTGAGGGTAAAA
1 TGGTAATTTTACAAATTGAGGGTATTT
* * * *
68067367 GGGTAATTTTA-TAATTTAGGGGTACTT
1 TGGTAATTTTACAAATTGA-GGGTATTT
*
68067394 TGGTAATTTTACAAGTTGAGGGTATTT
1 TGGTAATTTTACAAATTGAGGGTATTT
** ** *
68067421 TAATAATTTTACAGGTCGAGGGTATTT
1 TGGTAATTTTACAAATTGAGGGTATTT
*** * * *
68067448 CAATAATTTTACAAGTCGAGGGAATTT
1 TGGTAATTTTACAAATTGAGGGTATTT
* *
68067475 TAGTAATTTCACAAATT-AGGGGTATTT
1 TGGTAATTTTACAAATTGA-GGGTATTT
* *
68067502 TGGTAATTTTACAAACTGGGGGTATTT
1 TGGTAATTTTACAAATTGAGGGTATTT
* **
68067529 TGATAATTTTACAAA-CCAGGGTTATTT
1 TGGTAATTTTACAAATTGAGGG-TATTT
* * *
68067556 GGGTAATTTTACAAACTGGGGGTATTT
1 TGGTAATTTTACAAATTGAGGGTATTT
* **
68067583 TGATAATTTTACAAA-CCAGGGTTATTT
1 TGGTAATTTTACAAATTGAGGG-TATTT
* * *
68067610 GGGTAATTTTACAAACTGGGGGTATTT
1 TGGTAATTTTACAAATTGAGGGTATTT
* **
68067637 TGATAATTTTACAAA-CCAGGGTTATTT
1 TGGTAATTTTACAAATTGAGGG-TATTT
* * *
68067664 GGGTAATTTTACAAACTGGGGGTATTT
1 TGGTAATTTTACAAATTGAGGGTATTT
*
68067691 TGATAATTT
1 TGGTAATTT
68067700 GGTAAACTAA
Statistics
Matches: 263, Mismatches: 60, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
26 15 0.06
27 235 0.89
28 13 0.05
ACGTcount: A:0.31, C:0.07, G:0.23, T:0.40
Consensus pattern (27 bp):
TGGTAATTTTACAAATTGAGGGTATTT
Found at i:68067428 original size:54 final size:54
Alignment explanation
Indices: 68067384--68067699 Score: 388
Period size: 54 Copynumber: 5.9 Consensus size: 54
68067374 TTTATAATTT
** * * ***
68067384 AGGGGTACTTT-GGTAATTTTACAAGTTGAGGGTATTTTAATAATTTTACAGGTC
1 AGGGGTA-TTTGGGTAATTTTACAAACTGGGGGTATTTTGATAATTTTACAAACC
*** * * * * **
68067438 -GAGGGTATTTCAATAATTTTAC-AAGTCGAGGGAATTTT-AGTAATTTCACAAATT
1 AG-GGGTATTTGGGTAATTTTACAAACT-GGGGGTATTTTGA-TAATTTTACAAACC
*
68067492 AGGGGTATTTTGGTAATTTTACAAACTGGGGGTATTTTGATAATTTTACAAACC
1 AGGGGTATTTGGGTAATTTTACAAACTGGGGGTATTTTGATAATTTTACAAACC
*
68067546 AGGGTTATTTGGGTAATTTTACAAACTGGGGGTATTTTGATAATTTTACAAACC
1 AGGGGTATTTGGGTAATTTTACAAACTGGGGGTATTTTGATAATTTTACAAACC
*
68067600 AGGGTTATTTGGGTAATTTTACAAACTGGGGGTATTTTGATAATTTTACAAACC
1 AGGGGTATTTGGGTAATTTTACAAACTGGGGGTATTTTGATAATTTTACAAACC
*
68067654 AGGGTTATTTGGGTAATTTTACAAACTGGGGGTATTTTGATAATTT
1 AGGGGTATTTGGGTAATTTTACAAACTGGGGGTATTTTGATAATTT
68067700 GGTAAACTAA
Statistics
Matches: 235, Mismatches: 20, Indels: 14
0.87 0.07 0.05
Matches are distributed among these distances:
53 7 0.03
54 223 0.95
55 5 0.02
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (54 bp):
AGGGGTATTTGGGTAATTTTACAAACTGGGGGTATTTTGATAATTTTACAAACC
Found at i:68067707 original size:27 final size:27
Alignment explanation
Indices: 68067385--68067699 Score: 285
Period size: 27 Copynumber: 11.7 Consensus size: 27
68067375 TTATAATTTA
* * **
68067385 GGGGTACTTTGGTAATTTTACAAGTTG
1 GGGGTATTTTGATAATTTTACAAACTG
* * **
68067412 AGGGTATTTTAATAATTTTAC-AGGTCG
1 GGGGTATTTTGATAATTTTACAAACT-G
* ** *
68067439 AGGGTATTTCAATAATTTTAC-AAGTCG
1 GGGGTATTTTGATAATTTTACAAACT-G
* * * * *
68067466 AGGGAATTTT-AGTAATTTCACAAATTA
1 GGGGTATTTTGA-TAATTTTACAAACTG
*
68067493 GGGGTATTTTGGTAATTTTACAAACTG
1 GGGGTATTTTGATAATTTTACAAACTG
**
68067520 GGGGTATTTTGATAATTTTACAAACCA
1 GGGGTATTTTGATAATTTTACAAACTG
* * *
68067547 GGGTTATTTGGGTAATTTTACAAACTG
1 GGGGTATTTTGATAATTTTACAAACTG
**
68067574 GGGGTATTTTGATAATTTTACAAACCA
1 GGGGTATTTTGATAATTTTACAAACTG
* * *
68067601 GGGTTATTTGGGTAATTTTACAAACTG
1 GGGGTATTTTGATAATTTTACAAACTG
**
68067628 GGGGTATTTTGATAATTTTACAAACCA
1 GGGGTATTTTGATAATTTTACAAACTG
* * *
68067655 GGGTTATTTGGGTAATTTTACAAACTG
1 GGGGTATTTTGATAATTTTACAAACTG
68067682 GGGGTATTTTGATAATTT
1 GGGGTATTTTGATAATTT
68067700 GGTAAACTAA
Statistics
Matches: 235, Mismatches: 49, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
26 4 0.02
27 228 0.97
28 3 0.01
ACGTcount: A:0.30, C:0.08, G:0.23, T:0.40
Consensus pattern (27 bp):
GGGGTATTTTGATAATTTTACAAACTG
Found at i:68069581 original size:6 final size:6
Alignment explanation
Indices: 68069572--68069659 Score: 72
Period size: 6 Copynumber: 14.3 Consensus size: 6
68069562 AATTAGAACT
* * *
68069572 AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATT AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* * *
68069621 AGTATC AGGTAA-C AGAATC AAAATC AGAATC AGTATC AG
1 AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAATC AG
68069660 CTAACAGAAT
Statistics
Matches: 65, Mismatches: 11, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
5 3 0.05
6 55 0.85
7 5 0.08
8 2 0.03
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:68069610 original size:31 final size:31
Alignment explanation
Indices: 68069572--68069671 Score: 146
Period size: 31 Copynumber: 3.2 Consensus size: 31
68069562 AATTAGAACT
* * *
68069572 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGTATCAGGTAAC
*
68069603 AGAATCAGAATTAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGTATCAGGTAAC
* *
68069634 AGAATCAAAATCAGAATCAGTATCAGCTAAC
1 AGAATCAGAATCAGAATCAGTATCAGGTAAC
68069665 AGAATCA
1 AGAATCA
68069672 AAAATCAAAA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.47, C:0.15, G:0.18, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGTATCAGGTAAC
Found at i:68069883 original size:26 final size:27
Alignment explanation
Indices: 68069819--68069892 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 27
68069809 GCTCAGTTAT
* *
68069819 CAGATATTGTGGCTGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
68069846 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
* * *
68069872 TAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
68069893 TTAACAGAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 19 0.45
27 23 0.55
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:68070079 original size:22 final size:22
Alignment explanation
Indices: 68070051--68070114 Score: 76
Period size: 22 Copynumber: 3.0 Consensus size: 22
68070041 GCAAATACAT
*
68070051 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* * *
68070073 TTGGCACAGAGCCAT-ATGAGT
1 TTGGCACAAAGCCATAATCAGG
*
68070094 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
68070115 AAGGCTTTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 17 0.49
22 18 0.51
ACGTcount: A:0.34, C:0.23, G:0.22, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:68070598 original size:27 final size:27
Alignment explanation
Indices: 68070541--68070789 Score: 295
Period size: 27 Copynumber: 9.3 Consensus size: 27
68070531 GGGGCAAAAT
* * * *
68070541 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
68070567 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
68070594 AGTAATTCTACTCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
68070621 GGTAATTCTACCCTACAGTGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
68070647 TGGTAATTCTACCCTACAGGGGTATTTC
1 -GGTAATTCTACCCTACAGGGGTATTTC
* * *
68070675 GGTAATTTTACCCTACAGAGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
68070702 AGTAATTCTACCCTACTGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
68070729 GGTAGTTCTACCTTACATGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
68070756 GGTAATTCTACCTTACATGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
68070783 AGTAATT
1 GGTAATT
68070790 TTGTAAATCG
Statistics
Matches: 191, Mismatches: 29, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
26 17 0.09
27 171 0.90
28 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:68070815 original size:27 final size:27
Alignment explanation
Indices: 68070793--68070940 Score: 199
Period size: 27 Copynumber: 5.5 Consensus size: 27
68070783 AGTAATTTTG
*
68070793 TAAATCGAGCGTAAAACGATAATTCTA
1 TAAATCGAGGGTAAAACGATAATTCTA
68070820 TAAATCGAGGGTAAAACGATAATTCTA
1 TAAATCGAGGGTAAAACGATAATTCTA
* *
68070847 TAAATCGAGGGTAAAATGATAATTTTGA
1 TAAATCGAGGGTAAAACGATAATTCT-A
* * *
68070875 -AAATCGAGGGTAAAATGGTAATTTTA
1 TAAATCGAGGGTAAAACGATAATTCTA
* *
68070901 TAAATTGAGGGTAAAACGGTAATTCTA
1 TAAATCGAGGGTAAAACGATAATTCTA
*
68070928 TAAATCGGGGGTA
1 TAAATCGAGGGTA
68070941 CTTTGGTAAT
Statistics
Matches: 110, Mismatches: 9, Indels: 4
0.89 0.07 0.03
Matches are distributed among these distances:
26 1 0.01
27 108 0.98
28 1 0.01
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.28
Consensus pattern (27 bp):
TAAATCGAGGGTAAAACGATAATTCTA
Found at i:68070832 original size:54 final size:53
Alignment explanation
Indices: 68070784--68070954 Score: 191
Period size: 54 Copynumber: 3.2 Consensus size: 53
68070774 GGGTATTTCA
* * *
68070784 GTAATTTTGTAAATCGAGCGTAAAACGATAATTCTATAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGT-AAATG
* * * *
68070838 ATAATTCTATAAATCGAGGGTAAAATGATAATTTTGA-AAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAACGATAATTCT-ATAAATCGAGGGT-AAATG
* * * **
68070892 GTAATTTTATAAATTGAGGGTAAAACGGTAATTCTATAAATCGGGGGTACTTTG
1 GTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTA-AATG
68070946 GTAATTTTA
1 GTAATTTTA
68070955 CAATTTGAGG
Statistics
Matches: 98, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
53 2 0.02
54 95 0.97
55 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.32
Consensus pattern (53 bp):
GTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAATG
Found at i:68070859 original size:81 final size:80
Alignment explanation
Indices: 68070774--68070953 Score: 218
Period size: 81 Copynumber: 2.2 Consensus size: 80
68070764 TACCTTACAT
*
68070774 GGGTATTTCAGTAATTTTGTAAATCGAGCGTAAAACGATAATTCTATAAATCGAGGGTAAAACGA
1 GGGTATTT-AGTAATTTTGAAAATCGAGCGTAAAACGATAATTCTATAAATCGAGGGTAAAACGA
68070839 TAATTCTATAAATCGA
65 TAATTCTATAAATCGA
** * * * * *
68070855 GGGTA-AAATGATAATTTTGAAAATCGAGGGTAAAATGGTAATTTTATAAATTGAGGGTAAAACG
1 GGGTATTTA-G-TAATTTTGAAAATCGAGCGTAAAACGATAATTCTATAAATCGAGGGTAAAACG
* *
68070919 GTAATTCTATAAATCGG
64 ATAATTCTATAAATCGA
*
68070936 GGGTACTTTGGTAATTTT
1 GGGTA-TTTAGTAATTTT
68070954 ACAATTTGAG
Statistics
Matches: 82, Mismatches: 13, Indels: 8
0.80 0.13 0.08
Matches are distributed among these distances:
79 1 0.01
80 1 0.01
81 79 0.96
82 1 0.01
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.33
Consensus pattern (80 bp):
GGGTATTTAGTAATTTTGAAAATCGAGCGTAAAACGATAATTCTATAAATCGAGGGTAAAACGAT
AATTCTATAAATCGA
Found at i:68070966 original size:27 final size:27
Alignment explanation
Indices: 68070918--68071167 Score: 170
Period size: 27 Copynumber: 9.3 Consensus size: 27
68070908 AGGGTAAAAC
* * *
68070918 GGTAATTCTATAAATCG-GGGGTACTTT
1 GGTAATTTTACAAAT-GAGGGGTATTTT
*
68070945 GGTAATTTTACAATTTGA-GGGTATTTT
1 GGTAATTTTACAA-ATGAGGGGTATTTT
** ** * *
68070972 AATAATTTTACAGGTCGA-GCGTATTTC
1 GGTAATTTTACAAAT-GAGGGGTATTTT
* * * *
68070999 AGTAAATTCACAAATCAGGGGTATTTT
1 GGTAATTTTACAAATGAGGGGTATTTT
*
68071026 GGTAATTTTAC-AA-GCTGGGGTATTTT
1 GGTAATTTTACAAATG-AGGGGTATTTT
* **
68071052 GATAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAATGAGGGGTATTTT
68071079 GGTAATTTTACAAACT-AGGGGTATTTT
1 GGTAATTTTACAAA-TGAGGGGTATTTT
* ** * *
68071106 GGTAATTTTATAAACCAAGTGTATTTT
1 GGTAATTTTACAAATGAGGGGTATTTT
* **
68071133 AGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAATGAGGGGTATTTT
*
68071160 GATAATTT
1 GGTAATTT
68071168 GGTAAACTAA
Statistics
Matches: 176, Mismatches: 38, Indels: 18
0.76 0.16 0.08
Matches are distributed among these distances:
26 24 0.14
27 151 0.86
28 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GGTAATTTTACAAATGAGGGGTATTTT
Found at i:68070967 original size:81 final size:81
Alignment explanation
Indices: 68070785--68070940 Score: 240
Period size: 81 Copynumber: 1.9 Consensus size: 81
68070775 GGTATTTCAG
* *
68070785 TAATTTTGTAAATCGAGCGTAAAACGATAATTCTATAAATCGAGGGTAAAACGATAATTCTATAA
1 TAATTTTGAAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGATAATTCTATAA
68070850 ATCGAGGGTAAAATGA
66 ATCGAGGGTAAAATGA
* * * * *
68070866 TAATTTTGAAAATCGAGGGTAAAATGGTAATTTTATAAATTGAGGGTAAAACGGTAATTCTATAA
1 TAATTTTGAAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGATAATTCTATAA
*
68070931 ATCGGGGGTA
66 ATCGAGGGTA
68070941 CTTTGGTAAT
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 67 1.00
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30
Consensus pattern (81 bp):
TAATTTTGAAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGATAATTCTATAA
ATCGAGGGTAAAATGA
Found at i:68070978 original size:81 final size:81
Alignment explanation
Indices: 68070810--68071061 Score: 213
Period size: 81 Copynumber: 3.1 Consensus size: 81
68070800 AGCGTAAAAC
* * * ** *
68070810 GATAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGATAATTTTGA
1 GATAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGGGGGTAATTTGGTAATTTT-A
* ***
68070875 -AAATCGAGGGTAAAAT
65 CAAATTGAGGGTATTTT
* * *
68070891 GGTAATTTTATAAATTGAGGGTAAAACGGTAATTCTATAAATCGGGGGTACTTTGGTAATTTTAC
1 GATAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGGGGGTAATTTGGTAATTTTAC
*
68070956 AATTTGAGGGTATTTT
66 AAATTGAGGGTATTTT
* * ** * *** * * * *
68070972 AATAATTTTACAGGTCGAGCGTATTTCAGTAAATTC-ACAAATCAGGGGTATTTTGGTAATTTTA
1 GATAATTTTATAAATCGAGGGTAAAACGGT-AATTCTATAAATCGGGGGTAATTTGGTAATTTTA
**
68071036 CAAGCTG-GGGTATTTT
65 CAAATTGAGGGTATTTT
68071052 GATAATTTTA
1 GATAATTTTA
68071062 CAAACCAGGG
Statistics
Matches: 138, Mismatches: 31, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
80 19 0.14
81 114 0.83
82 5 0.04
ACGTcount: A:0.35, C:0.08, G:0.21, T:0.36
Consensus pattern (81 bp):
GATAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGGGGGTAATTTGGTAATTTTAC
AAATTGAGGGTATTTT
Found at i:68071122 original size:54 final size:54
Alignment explanation
Indices: 68071008--68071167 Score: 241
Period size: 54 Copynumber: 3.0 Consensus size: 54
68070998 CAGTAAATTC
* *
68071008 ACAAATCAGGGGTATTTTGGTAATTTTACAAGCT-GGGGTATTTTGATAATTTT
1 ACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTT
*
68071061 ACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTT
1 ACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTT
* * * * *
68071115 ATAAACCAAGTGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGATAATTT
1 ACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTT
68071168 GGTAAACTAA
Statistics
Matches: 97, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
53 32 0.33
54 65 0.67
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
ACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTT
Found at i:68071174 original size:27 final size:27
Alignment explanation
Indices: 68071008--68071167 Score: 207
Period size: 27 Copynumber: 6.0 Consensus size: 27
68070998 CAGTAAATTC
* *
68071008 ACAAATCAGGGGTATTTTGGTAATTTT
1 ACAAACCAGGGGTATTTTGATAATTTT
* *
68071035 AC-AAGCTGGGGTATTTTGATAATTTT
1 ACAAACCAGGGGTATTTTGATAATTTT
*
68071061 ACAAACCAGGGGTATTTTGGTAATTTT
1 ACAAACCAGGGGTATTTTGATAATTTT
* *
68071088 ACAAACTAGGGGTATTTTGGTAATTTT
1 ACAAACCAGGGGTATTTTGATAATTTT
* * *
68071115 ATAAACCAAGTGTATTTT-AGTAATTTT
1 ACAAACCAGGGGTATTTTGA-TAATTTT
68071142 ACAAACCAGGGGTATTTTGATAATTT
1 ACAAACCAGGGGTATTTTGATAATTT
68071168 GGTAAACTAA
Statistics
Matches: 115, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
26 23 0.20
27 91 0.79
28 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
ACAAACCAGGGGTATTTTGATAATTTT
Found at i:68073134 original size:6 final size:6
Alignment explanation
Indices: 68073116--68073243 Score: 75
Period size: 6 Copynumber: 20.8 Consensus size: 6
68073106 AAGAAACATT
* * *
68073116 ATCAGA A-CTAGA ATCAGA ATCAAA ATCAGA ATTAG- GTGGCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * * *
68073165 ATCAGA ATCAGT ACCAGGTA A-CAAA ATCAAA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
* *
68073216 A-CAGA ATCAAA ATCAGA ATCAGT ATCAG
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAG
68073244 GTCACAGAAT
Statistics
Matches: 95, Mismatches: 16, Indels: 22
0.71 0.12 0.17
Matches are distributed among these distances:
5 6 0.06
6 77 0.81
7 9 0.09
8 3 0.03
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:68073193 original size:31 final size:31
Alignment explanation
Indices: 68073125--68073266 Score: 185
Period size: 31 Copynumber: 4.5 Consensus size: 31
68073115 TATCAGAACT
* * * * **
68073125 AGAATCAGAATCAAAATCAGAATTAGGTGGC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
* *
68073156 AGAATCAGAATCAGAATCAGTACCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
*
68073187 AAAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
*
68073218 AGAATCAAAATCAGAATCAGTATCAGGTCAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
68073249 AGAATCAAAAATCAGAAT
1 AGAATC-AAAATCAGAAT
68073267 GTGAATGCAA
Statistics
Matches: 99, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
31 88 0.89
32 11 0.11
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.18
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGTATCAGGTAAC
Found at i:68073466 original size:26 final size:27
Alignment explanation
Indices: 68073403--68073477 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
68073393 GCTCAGTTAT
* * *
68073403 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACTAGATA
68073430 CAGATATTGTGGCAGAGCCACTAGA-A
1 CAGATATTGTGGCAGAGCCACTAGATA
* *
68073456 CAGATAATGTGGCAAAGCCACT
1 CAGATATTGTGGCAGAGCCACT
68073478 TAACAGAATA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 21 0.49
27 22 0.51
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACTAGATA
Found at i:68073492 original size:25 final size:26
Alignment explanation
Indices: 68073429--68073494 Score: 64
Period size: 26 Copynumber: 2.6 Consensus size: 26
68073419 GTCACCAGAT
** *
68073429 ACAGATATTGTGGCAGAGCCACTAGA
1 ACAGATAACGTGGCAAAGCCACTAGA
* *
68073455 ACAGATAATGTGGCAAAGCCACT-TA
1 ACAGATAACGTGGCAAAGCCACTAGA
68073480 ACAGA-ATACGTGGCA
1 ACAGATA-ACGTGGCA
68073495 CAAAGCCATC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
24 1 0.03
25 13 0.37
26 21 0.60
ACGTcount: A:0.38, C:0.20, G:0.24, T:0.18
Consensus pattern (26 bp):
ACAGATAACGTGGCAAAGCCACTAGA
Found at i:68073663 original size:22 final size:22
Alignment explanation
Indices: 68073635--68073699 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
68073625 GCAAATATAT
* *
68073635 TTGGCACACACCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
68073657 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
68073679 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
68073700 AAGGCTTTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.25, G:0.22, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:68074183 original size:27 final size:27
Alignment explanation
Indices: 68074126--68074367 Score: 281
Period size: 27 Copynumber: 9.0 Consensus size: 27
68074116 GGGGCAAAAT
* * * *
68074126 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
68074152 TGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
68074179 AGTAATTCTTCCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
68074206 GGTAATTCTACCCTCCAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
68074233 GGTAATTCTACCTTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
68074260 GGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
68074287 GGTAACTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
68074314 GGTAATTCTA-CCTCACATGGGTATTTC
1 GGTAATTCTACCCT-ACAGGGGTATTTC
* * *
68074341 GGTAATGCTACCTTACATGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
68074368 AGTAGTTTTG
Statistics
Matches: 183, Mismatches: 30, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
26 16 0.09
27 165 0.90
28 2 0.01
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:68074408 original size:27 final size:27
Alignment explanation
Indices: 68074376--68074597 Score: 275
Period size: 27 Copynumber: 8.3 Consensus size: 27
68074366 TCAGTAGTTT
68074376 TGTAAATCGAGGGTAAAACGGTAATTC
1 TGTAAATCGAGGGTAAAACGGTAATTC
* **
68074403 TATAAATCGAGGGTAAAACTATAATTC
1 TGTAAATCGAGGGTAAAACGGTAATTC
*
68074430 TGTAAATCGAGGGTAAAACGGTAGTTC
1 TGTAAATCGAGGGTAAAACGGTAATTC
* * *
68074457 TATAAATCGAGGGTAAAATGATAATTC
1 TGTAAATCGAGGGTAAAACGGTAATTC
*
68074484 TGTAAATCGAGGG-AAAACGGTAATTT
1 TGTAAATCGAGGGTAAAACGGTAATTC
* * *
68074510 TATTAATCGAGGGTAAAACGGTAATTT
1 TGTAAATCGAGGGTAAAACGGTAATTC
* * * *
68074537 TGTAAGTCGAGGATAAAACGATAATTT
1 TGTAAATCGAGGGTAAAACGGTAATTC
* * *
68074564 TGTAAATCGAGGATAAAACGGGAATTT
1 TGTAAATCGAGGGTAAAACGGTAATTC
68074591 TGTAAAT
1 TGTAAAT
68074598 TGGGGGAACT
Statistics
Matches: 169, Mismatches: 25, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 21 0.12
27 148 0.88
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.29
Consensus pattern (27 bp):
TGTAAATCGAGGGTAAAACGGTAATTC
Found at i:68074595 original size:107 final size:108
Alignment explanation
Indices: 68074373--68074597 Score: 299
Period size: 107 Copynumber: 2.1 Consensus size: 108
68074363 ATTTCAGTAG
*
68074373 TTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACTATAATTCTGTAAATC
1 TTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATC
* * * * * *
68074438 GAGGGTAAAACGGTAGTTCTATAAATCGAGGGTAAAATGATAA
66 GAGGATAAAACGATAATTCTATAAATCGAGGATAAAACGAGAA
* * * * * *
68074481 TTCTGTAAATCGAGGG-AAAACGGTAATTTTATTAATCGAGGGTAAAACGGTAATTTTGTAAGTC
1 TTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATC
* * *
68074545 GAGGATAAAACGATAATTTTGTAAATCGAGGATAAAACGGGAA
66 GAGGATAAAACGATAATTCTATAAATCGAGGATAAAACGAGAA
68074588 TTTTGTAAAT
1 TTTTGTAAAT
68074598 TGGGGGAACT
Statistics
Matches: 100, Mismatches: 17, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
107 85 0.85
108 15 0.15
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (108 bp):
TTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATC
GAGGATAAAACGATAATTCTATAAATCGAGGATAAAACGAGAA
Found at i:68074692 original size:27 final size:27
Alignment explanation
Indices: 68074611--68074695 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
68074601 GGGAACTTTG
* *
68074611 GTAATTTTACAAGTTGAGGGTATTTCA
1 GTAATTTTACAGGTCGAGGGTATTTCA
*
68074638 ATAATTTTACAGGTCGAGGGTATTTCA
1 GTAATTTTACAGGTCGAGGGTATTTCA
* *
68074665 GTAATTTTATAGGTCGAGCGTATTTCA
1 GTAATTTTACAGGTCGAGGGTATTTCA
68074692 GTAA
1 GTAA
68074696 ATTCACAAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAGGTCGAGGGTATTTCA
Found at i:68074724 original size:81 final size:81
Alignment explanation
Indices: 68074628--68074806 Score: 191
Period size: 81 Copynumber: 2.2 Consensus size: 81
68074618 TACAAGTTGA
** ** *** *
68074628 GGGTATTTCAATAATTTTACAGGTCGA-GGGTA-TTTCAGTAATTTTATAGGTCGAGCGTATTTC
1 GGGTATTTTGATAATTTTACA-AACGAGGGGTATTTTC-GTAATTTTATAAACCAAGCGTATTTC
*
68074691 AGTAAATTCACAAATCAG
64 AGTAAATTCACAAACCAG
* * * *
68074709 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTCGTAATTTTATAAACCAAGGGTATTTTAG
1 GGGTATTTTGATAATTTTACAAACGAGGGGTATTTTCGTAATTTTATAAACCAAGCGTATTTCAG
* *
68074774 TAATTTTACAAACCAG
66 TAAATTCACAAACCAG
68074790 GGGTATTTTGATAATTT
1 GGGTATTTTGATAATTT
68074807 GGTAAACTAA
Statistics
Matches: 80, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
80 2 0.03
81 74 0.93
82 4 0.05
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (81 bp):
GGGTATTTTGATAATTTTACAAACGAGGGGTATTTTCGTAATTTTATAAACCAAGCGTATTTCAG
TAAATTCACAAACCAG
Found at i:68074798 original size:27 final size:27
Alignment explanation
Indices: 68074684--68074806 Score: 149
Period size: 27 Copynumber: 4.6 Consensus size: 27
68074674 TAGGTCGAGC
* * * *
68074684 GTATTTCAGTAAATTCACAAATCAGGG
1 GTATTTTAGTAATTTTACAAACCAGGG
* *
68074711 GTATTTTGGTAATTTTACAAACTAGGG
1 GTATTTTAGTAATTTTACAAACCAGGG
* * *
68074738 GTATTTTCGTAATTTTATAAACCAAGG
1 GTATTTTAGTAATTTTACAAACCAGGG
68074765 GTATTTTAGTAATTTTACAAACCAGGG
1 GTATTTTAGTAATTTTACAAACCAGGG
68074792 GTATTTT-GATAATTT
1 GTATTTTAG-TAATTT
68074807 GGTAAACTAA
Statistics
Matches: 82, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 81 0.99
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GTATTTTAGTAATTTTACAAACCAGGG
Found at i:68076750 original size:6 final size:6
Alignment explanation
Indices: 68076732--68076851 Score: 77
Period size: 6 Copynumber: 19.3 Consensus size: 6
68076722 AAGAAACATT
* * *
68076732 ATCAGA A-CTAGA ATCAGA ATCAGA ATTAGA ATTAGGTG AT-AGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * *
68076781 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
*
68076832 A-CAGA ATCAAAA ATCAGA AT
1 ATCAGA ATC-AGA ATCAGA AT
68076852 GTCAATGCAT
Statistics
Matches: 91, Mismatches: 11, Indels: 24
0.72 0.09 0.19
Matches are distributed among these distances:
5 7 0.08
6 66 0.73
7 14 0.15
8 4 0.04
ACGTcount: A:0.48, C:0.13, G:0.17, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:68076776 original size:31 final size:31
Alignment explanation
Indices: 68076741--68076851 Score: 150
Period size: 31 Copynumber: 3.5 Consensus size: 31
68076731 TATCAGAACT
* * * * * *
68076741 AGAATCAGAATCAGAATTAGAATTAGGTGAT
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
*
68076772 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
68076803 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
68076834 AGAATCAAAAATCAGAAT
1 AGAATC-AAAATCAGAAT
68076852 GTCAATGCAT
Statistics
Matches: 73, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
31 62 0.85
32 11 0.15
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.21
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGTATCAGGTAAC
Found at i:68076807 original size:19 final size:19
Alignment explanation
Indices: 68076783--68076840 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
68076773 GAATCAGAAT
68076783 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
68076802 CAGAATCA--A--A---AT
1 CAGAATCAGTATCAGGTAA
68076814 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
68076833 CAGAATCA
1 CAGAATCA
68076841 AAAATCAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 9 0.30
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 17 0.57
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:68077222 original size:22 final size:23
Alignment explanation
Indices: 68077194--68077255 Score: 74
Period size: 22 Copynumber: 2.8 Consensus size: 23
68077184 GCAAATACGT
*
68077194 TTGGCACACAGCCATAAT-CAGG
1 TTGGCACAAAGCCATAATGCAGG
* *
68077216 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAATGCAGG
*
68077238 TTGACACAAAGCCATAAT
1 TTGGCACAAAGCCATAAT
68077256 TAGAAGGCTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.21
Consensus pattern (23 bp):
TTGGCACAAAGCCATAATGCAGG
Found at i:68077740 original size:27 final size:26
Alignment explanation
Indices: 68077710--68077796 Score: 120
Period size: 27 Copynumber: 3.2 Consensus size: 26
68077700 AGGTATCTCG
*
68077710 GTAATTCCATCCTACAGGGGTATTTTA
1 GTAATTCTA-CCTACAGGGGTATTTTA
*
68077737 GTAATTCTACCCTACAGGGGTATTTTG
1 GTAATTCTA-CCTACAGGGGTATTTTA
*
68077764 GTAATTCTACCTTACATGGGTATTTTA
1 GTAATTCTACC-TACAGGGGTATTTTA
68077791 GTAATT
1 GTAATT
68077797 TTGTAAATCG
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
26 2 0.04
27 52 0.96
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.40
Consensus pattern (26 bp):
GTAATTCTACCTACAGGGGTATTTTA
Found at i:68077811 original size:27 final size:27
Alignment explanation
Indices: 68077781--68078140 Score: 181
Period size: 27 Copynumber: 13.3 Consensus size: 27
68077771 TACCTTACAT
*
68077781 GGGTATTTTAGTAATTTTGTAAATCGA
1 GGGTATTTTAGTAATTTTATAAATCGA
*** * *
68077808 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTATTTTAGTAATTTTATAAATCGA
*** *
68077835 GGGTAAAAT-GATAATTCTATAAATCGA
1 GGGTATTTTAG-TAATTTTATAAATCGA
* ***** *
68077862 GGTTAAAACGGTAATTTTGTAAATCGA
1 GGGTATTTTAGTAATTTTATAAATCGA
*** *
68077889 GGGTAAAATAGTAATTTTATAAATTGA
1 GGGTATTTTAGTAATTTTATAAATCGA
*** * *
68077916 GGGTAAAATGGTAATTTTATAAATCGG
1 GGGTATTTTAGTAATTTTATAAATCGA
* * *
68077943 GGGTACTTTT-GTAATTTTACAAGTTGA
1 GGGTA-TTTTAGTAATTTTATAAATCGA
* * **
68077970 GGGTATTTTAATAATTTTACAGGTCGA
1 GGGTATTTTAGTAATTTTATAAATCGA
* * ** *
68077997 GGGTATTTCAATAATTTTATAGGTCCA
1 GGGTATTTTAGTAATTTTATAAATCGA
* * * *
68078024 GGGTATTTCAGTAATTTCACAAAT-TA
1 GGGTATTTTAGTAATTTTATAAATCGA
* * *
68078050 GGGGTATTTTGGTAATTTTACAAA-CTA
1 -GGGTATTTTAGTAATTTTATAAATCGA
* * *
68078077 GGGGTATTTTGGTAATTTTATAAACCAA
1 -GGGTATTTTAGTAATTTTATAAATCGA
* * *
68078105 GGATATTTTAGTAATTTTACAAA-CCA
1 GGGTATTTTAGTAATTTTATAAATCGA
68078131 GGGGTATTTT
1 -GGGTATTTT
68078141 GATAAATTGG
Statistics
Matches: 278, Mismatches: 47, Indels: 16
0.82 0.14 0.05
Matches are distributed among these distances:
26 8 0.03
27 266 0.96
28 4 0.01
ACGTcount: A:0.34, C:0.07, G:0.21, T:0.38
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTATAAATCGA
Found at i:68077839 original size:54 final size:53
Alignment explanation
Indices: 68077791--68077947 Score: 224
Period size: 54 Copynumber: 2.9 Consensus size: 53
68077781 GGGTATTTTA
* *
68077791 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAAT
1 GTAATTTTATAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAAT
* * * *
68077844 GATAATTCTATAAATCGAGGTTAAAACGGTAATTTTGTAAATCGAGGGTAAAAT
1 G-TAATTTTATAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAAT
* *
68077898 AGTAATTTTATAAATTGAGGGTAAAATGGTAATTTTATAAATCGGGGGTA
1 -GTAATTTTATAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTA
68077948 CTTTTGTAAT
Statistics
Matches: 90, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 88 0.98
55 1 0.01
ACGTcount: A:0.39, C:0.05, G:0.22, T:0.33
Consensus pattern (53 bp):
GTAATTTTATAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAAT
Found at i:68077850 original size:81 final size:80
Alignment explanation
Indices: 68077791--68077941 Score: 248
Period size: 81 Copynumber: 1.9 Consensus size: 80
68077781 GGGTATTTTA
*
68077791 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGATAATTCTATA
1 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGATAATTCTATA
68077856 AATCGAGGTTAAAAC
66 AATCGAGGTTAAAAC
* * * *
68077871 GGTAATTTTGTAAATCGAGGGTAAAATAGTAATTTTATAAATTGAGGGTAAAATGGTAATTTTAT
1 -GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGATAATTCTAT
68077936 AAATCG
65 AAATCG
68077942 GGGGTACTTT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 65 1.00
ACGTcount: A:0.40, C:0.05, G:0.21, T:0.34
Consensus pattern (80 bp):
GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGATAATTCTATA
AATCGAGGTTAAAAC
Found at i:68077957 original size:81 final size:80
Alignment explanation
Indices: 68077781--68077960 Score: 234
Period size: 81 Copynumber: 2.2 Consensus size: 80
68077771 TACCTTACAT
*
68077781 GGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGA
1 GGGTATTTT-GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGA
68077846 TAATTCTATAAATCGA
65 TAATTCTATAAATCGA
* **** * * *
68077862 GGTTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAGTAATTTTATAAATTGAGGGTAAAATGG
1 GGGT-ATTTTGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGA
* *
68077927 TAATTTTATAAATCGG
65 TAATTCTATAAATCGA
68077943 GGGTACTTTTGTAATTTT
1 GGGTA-TTTTGTAATTTT
68077961 ACAAGTTGAG
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
80 1 0.01
81 79 0.98
82 1 0.01
ACGTcount: A:0.37, C:0.05, G:0.22, T:0.37
Consensus pattern (80 bp):
GGGTATTTTGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGAT
AATTCTATAAATCGA
Found at i:68077970 original size:54 final size:53
Alignment explanation
Indices: 68077791--68077974 Score: 206
Period size: 54 Copynumber: 3.4 Consensus size: 53
68077781 GGGTATTTTA
* * * *
68077791 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAAT
1 GTAATTTTATAAATTGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAATT
* * * * * *
68077844 GATAATTCTATAAATCGAGGTTAAAACGGTAATTTTGTAAATCGAGGGTAAAATA
1 G-TAATTTTATAAATTGAGGGTAAAATGGTAATTTTATAAATCGAGGGT-AAATT
* **
68077899 GTAATTTTATAAATTGAGGGTAAAATGGTAATTTTATAAATCGGGGGTACTTTT
1 GTAATTTTATAAATTGAGGGTAAAATGGTAATTTTATAAATCGAGGGTA-AATT
* *
68077953 GTAATTTTACAAGTTGAGGGTA
1 GTAATTTTATAAATTGAGGGTA
68077975 TTTTAATAAT
Statistics
Matches: 109, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
53 2 0.02
54 103 0.94
55 4 0.04
ACGTcount: A:0.38, C:0.05, G:0.22, T:0.35
Consensus pattern (53 bp):
GTAATTTTATAAATTGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAATT
Found at i:68079528 original size:20 final size:20
Alignment explanation
Indices: 68079505--68079549 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
68079495 TTTGGAAAGT
68079505 ATATTTTATATCATGTGTTG
1 ATATTTTATATCATGTGTTG
68079525 ATATTTTATATCATGTGTTG
1 ATATTTTATATCATGTGTTG
*
68079545 GTATT
1 ATATT
68079550 AAAATGTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.24, C:0.04, G:0.16, T:0.56
Consensus pattern (20 bp):
ATATTTTATATCATGTGTTG
Found at i:68085633 original size:15 final size:15
Alignment explanation
Indices: 68085591--68085633 Score: 50
Period size: 16 Copynumber: 2.8 Consensus size: 15
68085581 TGTGTTGTTG
*
68085591 GATTAAATTGAATGA
1 GATTAATTTGAATGA
* *
68085606 AATTATGTTTGAATGA
1 GATTA-ATTTGAATGA
68085622 GATTAATTTGAA
1 GATTAATTTGAA
68085634 GTTGTATAGA
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
15 10 0.45
16 12 0.55
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.40
Consensus pattern (15 bp):
GATTAATTTGAATGA
Found at i:68086945 original size:33 final size:33
Alignment explanation
Indices: 68086903--68086968 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
68086893 TGCTTGAGTA
68086903 TGTTTTGGTTAAATAATGGTTTGAGTCTATTTT
1 TGTTTTGGTTAAATAATGGTTTGAGTCTATTTT
68086936 TGTTTTGGTTAAATAATGGTTTGAGTCTATTTT
1 TGTTTTGGTTAAATAATGGTTTGAGTCTATTTT
68086969 AGATATTATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.21, C:0.03, G:0.21, T:0.55
Consensus pattern (33 bp):
TGTTTTGGTTAAATAATGGTTTGAGTCTATTTT
Found at i:68091195 original size:40 final size:40
Alignment explanation
Indices: 68091140--68091236 Score: 151
Period size: 40 Copynumber: 2.4 Consensus size: 40
68091130 AATAGTATTT
68091140 GGCACTAAGTGTGCGATTTAAACTAGCTTCAG-CTATATGA
1 GGCACTAAGTGTGCGATTTAAACTAGCTT-AGACTATATGA
* *
68091180 GGCACTAAGTGTGCGATTTAAACTAGCTTTGACTATGTGA
1 GGCACTAAGTGTGCGATTTAAACTAGCTTAGACTATATGA
*
68091220 GGCGCTAAGTGTGCGAT
1 GGCACTAAGTGTGCGAT
68091237 ACCATCTTAG
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
39 1 0.02
40 52 0.98
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (40 bp):
GGCACTAAGTGTGCGATTTAAACTAGCTTAGACTATATGA
Found at i:68093742 original size:42 final size:42
Alignment explanation
Indices: 68093636--68093757 Score: 149
Period size: 43 Copynumber: 2.9 Consensus size: 42
68093626 TATCGTACCA
* * *
68093636 ATGCCATACCCCAGATATGGTCTTACATGTAATCTCGTATCT
1 ATGCCATACCCCAGATATGGTCTTACACGTAATCTCATATCG
*
68093678 ATGCCA-ACAGCCCAGCTATGGTCTTACACG-AAGTCTCATATCG
1 ATGCCATAC--CCCAGATATGGTCTTACACGTAA-TCTCATATCG
* *
68093721 ATTCCATATCCCAGATATGGTCTTACACGTAATCTCA
1 ATGCCATACCCCAGATATGGTCTTACACGTAATCTCA
68093758 GTAGCCCTAA
Statistics
Matches: 68, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
41 2 0.03
42 32 0.47
43 33 0.49
44 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.30
Consensus pattern (42 bp):
ATGCCATACCCCAGATATGGTCTTACACGTAATCTCATATCG
Found at i:68097319 original size:93 final size:93
Alignment explanation
Indices: 68097191--68097361 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
68097181 GCCCCTAAGT
* * * *
68097191 GAACTCGGACTCAACTCAATGAGCTCAGGCGTTCGCATCCATAAGTTAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACCCAA
68097256 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
**
68097284 GAACTCGGACTCAACTCAACGAG-TTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACCCA
1 GAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACCCA
68097348 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
68097362 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 3 0.04
93 68 0.96
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACCCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:68097377 original size:46 final size:45
Alignment explanation
Indices: 68097186--68097369 Score: 117
Period size: 46 Copynumber: 4.0 Consensus size: 45
68097176 AACCCGCCCC
* * * ** * *
68097186 TAAGTGAACTCGGACTCAACTCAATGAGCTCAGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACCCAACGAGTTC-GGAATGCGCAACCA
* *
68097232 TAAGTTAACTCGGACTCAACTCAACGAGTTCGG-ATGC-CTAGTTA-CA
1 TAAGTGAACTCGGACTCAACCCAACGAGTTCGGAATGCGC-A---ACCA
* * * * * *
68097278 TTTCA-CGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACCCAACGAGTTCGGA-ATGCGCAACCA
*
68097325 TAAGTGAACTCGGACTCAACCCAACGAGTTCGG-ATGCTCAACCA
1 TAAGTGAACTCGGACTCAACCCAACGAGTTCGGAATGCGCAACCA
68097369 T
1 T
68097370 CCTAGTGACA
Statistics
Matches: 108, Mismatches: 19, Indels: 24
0.72 0.13 0.16
Matches are distributed among these distances:
43 1 0.01
44 12 0.11
45 4 0.04
46 56 0.52
47 28 0.26
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACCCAACGAGTTCGGAATGCGCAACCA
Found at i:68104529 original size:93 final size:93
Alignment explanation
Indices: 68104414--68104584 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
68104404 GCCCCTAAGT
* * *
68104414 GAACTCGGACTCAACTCTACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
68104479 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * *
68104507 GAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
68104572 CGAGTTCGGATGC
66 CGAGTTCGGATGC
68104585 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:68104570 original size:46 final size:46
Alignment explanation
Indices: 68104409--68104581 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
68104399 AACCCGCCCC
* * * *
68104409 TAAGTGAACTCGGACTCAACTCTACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* * *
68104455 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * *
68104503 TCA-CGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
68104548 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
68104582 TGCTCAACCA
Statistics
Matches: 102, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 58 0.57
47 27 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:68109247 original size:27 final size:26
Alignment explanation
Indices: 68109204--68109291 Score: 113
Period size: 27 Copynumber: 3.3 Consensus size: 26
68109194 TGGAGGAAGC
*
68109204 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
* *
68109231 GTTTTGGTGGCTCTGCCATAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* *
68109257 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
68109284 GTTCTGGT
1 GTTCTGGT
68109292 AGCCATGCCG
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 15 0.28
27 38 0.72
ACGTcount: A:0.18, C:0.20, G:0.23, T:0.39
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:68132551 original size:13 final size:13
Alignment explanation
Indices: 68132533--68132558 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
68132523 GGCCTCCGAG
68132533 GCCTATAACATAC
1 GCCTATAACATAC
68132546 GCCTATAACATAC
1 GCCTATAACATAC
68132559 CTAGAGGCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.31, G:0.08, T:0.23
Consensus pattern (13 bp):
GCCTATAACATAC
Found at i:68138571 original size:43 final size:42
Alignment explanation
Indices: 68138489--68138624 Score: 143
Period size: 43 Copynumber: 3.2 Consensus size: 42
68138479 TGAGACATCG
*
68138489 TGTAAGACCATGTCTGGGACACAGGCCTTG-ATTGAGATTTACA
1 TGTAAGACCATGTCTGGGACACAGGCATTGTATT--GATTTACA
* *
68138532 TTTAAGACCATGTCTGGGACATCA-GCATTGTATCTGATTT-CG
1 TGTAAGACCATGTCTGGGACA-CAGGCATTGTAT-TGATTTACA
* * * *
68138574 TGTAAGGCCTTGTCTGGGACAGAGGCATTGTTATTGAATTACA
1 TGTAAGACCATGTCTGGGACACAGGCATTG-TATTGATTTACA
68138617 TGTAAGAC
1 TGTAAGAC
68138625 TAGATCCGGG
Statistics
Matches: 77, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
41 1 0.01
42 30 0.39
43 41 0.53
44 4 0.05
45 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACACAGGCATTGTATTGATTTACA
Found at i:68144591 original size:18 final size:18
Alignment explanation
Indices: 68144568--68144608 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
68144558 TGAATCTGTT
68144568 TAACGGTAAGATTTTCGG
1 TAACGGTAAGATTTTCGG
68144586 TAACGGTAAGATTTTCGG
1 TAACGGTAAGATTTTCGG
*
68144604 GAACG
1 TAACG
68144609 AAAATCCCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.29
Consensus pattern (18 bp):
TAACGGTAAGATTTTCGG
Found at i:68149436 original size:40 final size:40
Alignment explanation
Indices: 68149381--68149504 Score: 155
Period size: 40 Copynumber: 3.1 Consensus size: 40
68149371 GCTACTTGTT
*
68149381 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
68149421 CAAATGCCTTCGGGACTTAACCCAGATT-TAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GGTTATAGTAACTCGCA
* *
68149461 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
68149500 CAAAT
1 CAAAT
68149505 TGTAACAGCC
Statistics
Matches: 71, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
38 1 0.01
39 22 0.31
40 45 0.63
41 3 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:68173304 original size:27 final size:27
Alignment explanation
Indices: 68173274--68173451 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
68173264 ATATTGAGTC
* * * *
68173274 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
68173301 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
68173328 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
68173356 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
68173383 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
68173410 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
68173437 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68173452 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:68173413 original size:82 final size:81
Alignment explanation
Indices: 68173295--68173450 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
68173285 TGCTATATAA
* *
68173295 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
68173360 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
68173377 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
68173441 CACTTAGTGC
65 CACTTAGTGC
68173451 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:68186071 original size:40 final size:40
Alignment explanation
Indices: 68186002--68186303 Score: 545
Period size: 40 Copynumber: 7.6 Consensus size: 40
68185992 AACCCAAGTA
* *
68186002 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
68186041 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
68186081 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
68186121 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
68186161 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
68186201 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
68186241 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
68186281 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
68186304 CATCCGAATA
Statistics
Matches: 257, Mismatches: 4, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
39 13 0.05
40 244 0.95
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:68189518 original size:48 final size:46
Alignment explanation
Indices: 68189415--68189789 Score: 255
Period size: 48 Copynumber: 7.9 Consensus size: 46
68189405 GAGTTATTGT
* * * *
68189415 GAGCTAGTGTAAGA-CATGTCTAGGACAT-GCATCAGCCACATTATG-A
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-G--GCATTAAGAA
68189461 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGACTA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGA--A
* * *
68189509 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGTAAAGTA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT--T-AAGAA
* *
68189556 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATAGAG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-TTA-AGAA
* * * * * * *
68189603 GTGTCAGTGTAAGATCATGTCTTGGACATGGCATCGATACGGA-TATGCGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG----GCATTAAG-AA
* * *
68189653 GAGCCAGTGTAAGACCATGTATGGGACATGGCATCGGCCTTGATGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT-AAGA--A
* ** *** * *
68189702 TAGTTAGTGTAAGA-CATGTCTCAAACATGGCATCGAC-TTGAGACA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGA-A
*
68189747 TTAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTA
1 -GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTA
68189790 TACCCTCTGT
Statistics
Matches: 258, Mismatches: 46, Indels: 48
0.73 0.13 0.14
Matches are distributed among these distances:
45 7 0.03
46 50 0.19
47 68 0.26
48 82 0.32
49 16 0.06
50 33 0.13
52 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGAA
Found at i:68189576 original size:94 final size:95
Alignment explanation
Indices: 68189415--68189789 Score: 335
Period size: 94 Copynumber: 3.9 Consensus size: 95
68189405 GAGTTATTGT
* * * *
68189415 GAGCTAGTGTAAGACATGTCTAGGACAT-GCATCAGCCACAT-TATG-AGAGCCAGTGTAAGACC
1 GAGCTAGTGTAAGACATGTCTAGGACATGGCATC-GCCTCGTAGAAGTAGAGCCAGTGTAAGACC
68189477 ATGTCTGGGACATGGCATCGGCATTAAGACTA
65 ATGTCTGGGACATGGCATCGGCATTAAGA-TA
*
68189509 GAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGTA-AAGTA-AGCCAGTGTAAGACC
1 GAGCTAGTGTAAGACATGTCTAGGACATGGCATC-GCCTCGTAGAAGTAGAGCCAGTGTAAGACC
* *
68189571 ATGTCTGGGACATGGCATCGGCACGTATAGA-G
65 ATGTCTGGGACATGGCATCGGCA-TTA-AGATA
* * * * * * *
68189603 GTG-TCAGTGTAAGATCATGTCTTGGACATGGCATCG-ATACGGATATGCGAGAGCCAGTGTAAG
1 GAGCT-AGTGTAAGA-CATGTCTAGGACATGGCATCGCCT-CGTAGAAG-TAGAGCCAGTGTAAG
* * *
68189666 ACCATGTATGGGACATGGCATCGGCCTTGATGATGA
62 ACCATGTCTGGGACATGGCATCGGCATT-AAGAT-A
* * * * * *
68189702 TAGTTAGTGTAAGACATGTCTCA-AACATGGCATCGACTTG-AGACA-T-TAGCCAGTGTAAGAC
1 GAGCTAGTGTAAGACATGTCT-AGGACATGGCATCGCCTCGTAGA-AGTAGAGCCAGTGTAAGAC
68189763 CATGTCTGGGACATGGCATCGGCATTA
64 CATGTCTGGGACATGGCATCGGCATTA
68189790 TACCCTCTGT
Statistics
Matches: 233, Mismatches: 30, Indels: 36
0.78 0.10 0.12
Matches are distributed among these distances:
93 1 0.00
94 90 0.39
95 58 0.25
96 10 0.04
97 6 0.03
98 56 0.24
99 11 0.05
100 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (95 bp):
GAGCTAGTGTAAGACATGTCTAGGACATGGCATCGCCTCGTAGAAGTAGAGCCAGTGTAAGACCA
TGTCTGGGACATGGCATCGGCATTAAGATA
Found at i:68189689 original size:98 final size:95
Alignment explanation
Indices: 68189459--68189791 Score: 307
Period size: 95 Copynumber: 3.5 Consensus size: 95
68189449 GCCACATTAT
* *
68189459 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-TTA-AGA-CTAGAGCTAGTGTAA
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTTATAGAGATAG-TC-AGTGTAA
* *
68189521 GACATGTCTGGGACAT-GCATCGGCCT-CGTAAAG-
64 GACATGTCTCGGACATGGCATC-G--TACG-GAAGC
* * *
68189554 TA-AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATAGAGGT-GTCAGTGTAAGA
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTTATAGAGATAGTCAGTGTAAGA
*
68189617 TCATGTCTTGGACATGGCATCGATACGGATATGC
66 -CATGTCTCGGACATGGCATCG-TACGGA-A-GC
* *
68189651 GAGAGCCAGTGTAAGACCATGTATGGGACATGGCATCGGC-CTTGAT-GATGATAGTTAGTGTAA
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTT-ATAGA-GATAGTCAGTGTAA
** *
68189714 GACATGTCTCAAACATGGCATCG-ACTTG-AGAC
64 GACATGTCTCGGACATGGCATCGTAC-GGAAG-C
*
68189746 -ATTAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-TTATA
1 GA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTTATA
68189792 CCCTCTGTTT
Statistics
Matches: 202, Mismatches: 18, Indels: 36
0.79 0.07 0.14
Matches are distributed among these distances:
94 53 0.26
95 61 0.30
96 12 0.06
97 7 0.03
98 58 0.29
99 11 0.05
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (95 bp):
GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTTATAGAGATAGTCAGTGTAAGA
CATGTCTCGGACATGGCATCGTACGGAAGC
Found at i:68218676 original size:16 final size:16
Alignment explanation
Indices: 68218655--68218686 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
68218645 TTCTCCTTAT
68218655 TCACTTAAGATTCACC
1 TCACTTAAGATTCACC
*
68218671 TCACTTAATATTCACC
1 TCACTTAAGATTCACC
68218687 CGTTGAACAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.31, G:0.03, T:0.34
Consensus pattern (16 bp):
TCACTTAAGATTCACC
Found at i:68220005 original size:16 final size:16
Alignment explanation
Indices: 68219983--68220051 Score: 111
Period size: 16 Copynumber: 4.2 Consensus size: 16
68219973 TTTGGTTCGC
68219983 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
68219999 CGTATTGGATTACAGG
1 TGTATTGGATTAGAGG
68220015 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
68220032 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
68220048 TGTA
1 TGTA
68220052 ATAGCTAATC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
16 33 0.69
17 15 0.31
ACGTcount: A:0.25, C:0.03, G:0.36, T:0.36
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:68220029 original size:33 final size:32
Alignment explanation
Indices: 68219983--68220051 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 32
68219973 TTTGGTTCGC
68219983 TGTATTGGATTAGAGGCGTATTGGATTACAGG
1 TGTATTGGATTAGAGGCGTATTGGATTACAGG
* *
68220015 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGCGTATTGGATTACAGG
68220048 TGTA
1 TGTA
68220052 ATAGCTAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
32 6 0.18
33 28 0.82
ACGTcount: A:0.25, C:0.03, G:0.36, T:0.36
Consensus pattern (32 bp):
TGTATTGGATTAGAGGCGTATTGGATTACAGG
Found at i:68224616 original size:16 final size:16
Alignment explanation
Indices: 68224594--68224662 Score: 111
Period size: 16 Copynumber: 4.2 Consensus size: 16
68224584 TTTGGTTCGC
68224594 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
68224610 CGTATTGGATTACAGG
1 TGTATTGGATTAGAGG
68224626 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
68224643 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
68224659 TGTA
1 TGTA
68224663 ATAGCTAATC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
16 33 0.69
17 15 0.31
ACGTcount: A:0.25, C:0.03, G:0.36, T:0.36
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:68224640 original size:33 final size:32
Alignment explanation
Indices: 68224594--68224662 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 32
68224584 TTTGGTTCGC
68224594 TGTATTGGATTAGAGGCGTATTGGATTACAGG
1 TGTATTGGATTAGAGGCGTATTGGATTACAGG
* *
68224626 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGCGTATTGGATTACAGG
68224659 TGTA
1 TGTA
68224663 ATAGCTAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
32 6 0.18
33 28 0.82
ACGTcount: A:0.25, C:0.03, G:0.36, T:0.36
Consensus pattern (32 bp):
TGTATTGGATTAGAGGCGTATTGGATTACAGG
Found at i:68224919 original size:18 final size:17
Alignment explanation
Indices: 68224898--68224932 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
68224888 TTATTATTAA
*
68224898 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
68224916 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
68224933 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:68225039 original size:18 final size:17
Alignment explanation
Indices: 68225018--68225052 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
68225008 TTATTATTAA
*
68225018 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
68225036 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
68225053 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:68225159 original size:18 final size:17
Alignment explanation
Indices: 68225138--68225172 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
68225128 TTATTATTAA
*
68225138 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
68225156 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
68225173 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:68225300 original size:120 final size:120
Alignment explanation
Indices: 68224881--68225279 Score: 773
Period size: 120 Copynumber: 3.3 Consensus size: 120
68224871 ATCATATTTA
68224881 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
68224946 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
68225001 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
68225066 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
68225121 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
68225186 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
*
68225241 AACATAATTATTATTAAATATAATTTAA-TAAAATATATA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATA
68225280 TTTTCAATTA
Statistics
Matches: 277, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
119 11 0.04
120 266 0.96
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:68228390 original size:13 final size:13
Alignment explanation
Indices: 68228372--68228397 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
68228362 CAGCTAAACT
68228372 GAAACAGAAGGAA
1 GAAACAGAAGGAA
68228385 GAAACAGAAGGAA
1 GAAACAGAAGGAA
68228398 CAGCTAAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.31, T:0.00
Consensus pattern (13 bp):
GAAACAGAAGGAA
Found at i:68228403 original size:36 final size:36
Alignment explanation
Indices: 68228362--68228440 Score: 131
Period size: 36 Copynumber: 2.2 Consensus size: 36
68228352 GGTTGTGAAG
*
68228362 CAGCTAAACTGAAACAGAAGGAAGAAACAGAAGGAA
1 CAGCTAAACTGAAACAGAAAGAAGAAACAGAAGGAA
*
68228398 CAGCTAAACTGAAACAGAAAGAAGAAATAGAAGGAA
1 CAGCTAAACTGAAACAGAAAGAAGAAACAGAAGGAA
*
68228434 CGGCTAA
1 CAGCTAA
68228441 GTTGTGAAGT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.54, C:0.14, G:0.24, T:0.08
Consensus pattern (36 bp):
CAGCTAAACTGAAACAGAAAGAAGAAACAGAAGGAA
Found at i:68235438 original size:48 final size:47
Alignment explanation
Indices: 68235383--68235687 Score: 326
Period size: 48 Copynumber: 6.4 Consensus size: 47
68235373 CCATGTTAAC
* *
68235383 CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
1 CCGCACACATAGTGCCATA-TAATTCACACACATATTGACATTCAAAT
* * * *
68235431 CCGCACACATAGTGCCATATAAATC-CGCACATATAGTGCCATACAAAT
1 CCGCACACATAGTGCCATATAATTCACACACATAT--TGACATTCAAAT
* * *
68235479 TCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
1 CCGCACACATAGTGCCATA-TAATTCACACACATATTGACATTCAAAT
* * * *
68235527 CCGCACACATAGTGCCATATAAATC-CGCACATATAGTGCCATACAAAT
1 CCGCACACATAGTGCCATATAATTCACACACATAT--TGACATTCAAAT
* * *
68235575 TCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
1 CCGCACACATAGTGCCATA-TAATTCACACACATATTGACATTCAAAT
** * *
68235623 CCGCACACATAGTGCCATATAAATTCGTACACATAGTGCCATTCAAAT
1 CCGCACACATAGTGCCATAT-AATTCACACACATATTGACATTCAAAT
**
68235671 TAGCACACATAGTGCCA
1 CCGCACACATAGTGCCA
68235688 AAGTCATTTC
Statistics
Matches: 212, Mismatches: 36, Indels: 18
0.80 0.14 0.07
Matches are distributed among these distances:
46 14 0.07
47 11 0.05
48 163 0.77
49 10 0.05
50 14 0.07
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (47 bp):
CCGCACACATAGTGCCATATAATTCACACACATATTGACATTCAAAT
Found at i:68235500 original size:96 final size:96
Alignment explanation
Indices: 68235384--68235686 Score: 561
Period size: 96 Copynumber: 3.2 Consensus size: 96
68235374 CATGTTAACC
68235384 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
1 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
68235449 ATAAATCCGCACATATAGTGCCATACAAATT
66 ATAAATCCGCACATATAGTGCCATACAAATT
68235480 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
1 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
68235545 ATAAATCCGCACATATAGTGCCATACAAATT
66 ATAAATCCGCACATATAGTGCCATACAAATT
68235576 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
1 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
* * * *
68235641 ATAAATTCGTACACATAGTGCCATTCAAATT
66 ATAAATCCGCACATATAGTGCCATACAAATT
*
68235672 AGCACACATAGTGCC
1 CGCACACATAGTGCC
68235687 AAAGTCATTT
Statistics
Matches: 202, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
96 202 1.00
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (96 bp):
CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
ATAAATCCGCACATATAGTGCCATACAAATT
Found at i:68235687 original size:24 final size:24
Alignment explanation
Indices: 68235355--68235687 Score: 263
Period size: 24 Copynumber: 13.9 Consensus size: 24
68235345 TCAAGCAAGG
*
68235355 AAATTCGCACCCATAGTGCCATGT-
1 AAATTCGCACACATAGTGCCAT-TC
* **
68235379 TAACCCGCACACATAGTGCC-TT-
1 AAATTCGCACACATAGTGCCATTC
* * * *
68235401 AGTAATTCACATACATATTGACATTC
1 A--AATTCGCACACATAGTGCCATTC
*
68235427 AAATCCGCACACATAGTGCCATAT-
1 AAATTCGCACACATAGTGCCAT-TC
* * *
68235451 AAATCCGCACATATAGTGCCATAC
1 AAATTCGCACACATAGTGCCATTC
68235475 AAATTCGCACACATAGTGCC-TT-
1 AAATTCGCACACATAGTGCCATTC
* * * *
68235497 AGTAATTCACATACATATTGACATTC
1 A--AATTCGCACACATAGTGCCATTC
*
68235523 AAATCCGCACACATAGTGCCATAT-
1 AAATTCGCACACATAGTGCCAT-TC
* * *
68235547 AAATCCGCACATATAGTGCCATAC
1 AAATTCGCACACATAGTGCCATTC
68235571 AAATTCGCACACATAGTGCC-TT-
1 AAATTCGCACACATAGTGCCATTC
* * * *
68235593 AGTAATTCACATACATATTGACATTC
1 A--AATTCGCACACATAGTGCCATTC
*
68235619 AAATCCGCACACATAGTGCCATAT-
1 AAATTCGCACACATAGTGCCAT-TC
*
68235643 AAATTCGTACACATAGTGCCATTC
1 AAATTCGCACACATAGTGCCATTC
*
68235667 AAATTAGCACACATAGTGCCA
1 AAATTCGCACACATAGTGCCA
68235688 AAGTCATTTC
Statistics
Matches: 243, Mismatches: 48, Indels: 36
0.74 0.15 0.11
Matches are distributed among these distances:
22 3 0.01
23 4 0.02
24 224 0.92
25 9 0.04
26 3 0.01
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (24 bp):
AAATTCGCACACATAGTGCCATTC
Found at i:68236135 original size:16 final size:16
Alignment explanation
Indices: 68236114--68236145 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
68236104 ATTACTTCAA
68236114 ATAAACACACATATAT
1 ATAAACACACATATAT
*
68236130 ATAAACACATATATAT
1 ATAAACACACATATAT
68236146 TTTTGTACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (16 bp):
ATAAACACACATATAT
Found at i:68254166 original size:44 final size:44
Alignment explanation
Indices: 68254117--68254204 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
68254107 AACCTATACT
68254117 ACCACATTTCATGGTTTATCATGCAATGAATGTCTAAATTGTCA
1 ACCACATTTCATGGTTTATCATGCAATGAATGTCTAAATTGTCA
68254161 ACCACATTTCATGGTTTATCATGCAATGAATGTCTAAATTGTCA
1 ACCACATTTCATGGTTTATCATGCAATGAATGTCTAAATTGTCA
68254205 TACATTCAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (44 bp):
ACCACATTTCATGGTTTATCATGCAATGAATGTCTAAATTGTCA
Found at i:68269638 original size:13 final size:13
Alignment explanation
Indices: 68269620--68269644 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68269610 TTTAAAAAAC
68269620 TTTTATTTATAAT
1 TTTTATTTATAAT
68269633 TTTTATTTATAA
1 TTTTATTTATAA
68269645 AATATTTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TTTTATTTATAAT
Found at i:68272136 original size:21 final size:22
Alignment explanation
Indices: 68272110--68272150 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
68272100 ATAGATGCAA
68272110 CATTTACTATTTAA-AAAGTAT
1 CATTTACTATTTAATAAAGTAT
*
68272131 CATTTATTATTTAATAAAGT
1 CATTTACTATTTAATAAAGT
68272151 TAATATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.41, C:0.07, G:0.05, T:0.46
Consensus pattern (22 bp):
CATTTACTATTTAATAAAGTAT
Found at i:68275864 original size:12 final size:12
Alignment explanation
Indices: 68275847--68275879 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
68275837 GTGTAATGTA
68275847 ATTTAATATTTT
1 ATTTAATATTTT
68275859 ATTTAATA-TTT
1 ATTTAATATTTT
68275870 -TTTAATATTT
1 ATTTAATATTT
68275880 GATAAATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 7 0.35
11 5 0.25
12 8 0.40
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATTTAATATTTT
Found at i:68275875 original size:10 final size:11
Alignment explanation
Indices: 68275847--68275879 Score: 50
Period size: 10 Copynumber: 3.0 Consensus size: 11
68275837 GTGTAATGTA
68275847 ATTTAATATTTT
1 ATTTAATA-TTT
68275859 ATTTAATATTT
1 ATTTAATATTT
68275870 -TTTAATATTT
1 ATTTAATATTT
68275880 GATAAATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.48
11 3 0.14
12 8 0.38
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (11 bp):
ATTTAATATTT
Found at i:68283014 original size:28 final size:28
Alignment explanation
Indices: 68282951--68283804 Score: 1604
Period size: 28 Copynumber: 30.5 Consensus size: 28
68282941 ATATTAAGTC
* *
68282951 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
68282978 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
68283006 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
68283034 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
68283062 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
68283090 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
68283118 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
68283146 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
68283174 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
68283202 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
68283230 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
68283258 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
68283286 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
68283314 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
68283342 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
68283370 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
68283398 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
68283426 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
68283454 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
68283482 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
68283510 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
68283538 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
68283566 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
68283594 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
68283622 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
68283650 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
68283678 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
68283706 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
68283734 CGCACACTTAGTGCTACATAGTTAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
* * *
68283762 CGCACACTTAGTGCTGTACA-ATTTAAACC
1 CGCACACTTAGTGC--TACATAATCAAACT
68283791 CGCACACTTAGTGC
1 CGCACACTTAGTGC
68283805 CAATCTCATG
Statistics
Matches: 818, Mismatches: 6, Indels: 4
0.99 0.01 0.00
Matches are distributed among these distances:
27 22 0.03
28 771 0.94
29 21 0.03
30 4 0.00
ACGTcount: A:0.35, C:0.28, G:0.11, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:68290328 original size:28 final size:28
Alignment explanation
Indices: 68290265--68290418 Score: 247
Period size: 28 Copynumber: 5.5 Consensus size: 28
68290255 ATATTAAGTC
* *
68290265 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
68290292 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
68290320 CGCACACTTAATGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
68290348 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
68290376 CGCACACTTAGTGCTACATAGTTAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
68290404 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68290419 GTACAATTTA
Statistics
Matches: 120, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
27 22 0.18
28 98 0.82
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:68299110 original size:28 final size:29
Alignment explanation
Indices: 68299073--68299175 Score: 93
Period size: 28 Copynumber: 3.6 Consensus size: 29
68299063 ACCCCTACAT
* *
68299073 ACATGCATATGGCCCATTTTCCCCAA-TC
1 ACATTCATATGGCCCATTTGCCCCAATTC
* * *
68299101 TCATTTATATGGCCCA-TTGGCCCAATTC
1 ACATTCATATGGCCCATTTGCCCCAATTC
** * *
68299129 ACATTCATATGGCCCATCAGGCCCAAATC
1 ACATTCATATGGCCCATTTGCCCCAATTC
* *
68299158 ACCTTTATATGGCCCATT
1 ACATTCATATGGCCCATT
68299176 AGGCCCAAAT
Statistics
Matches: 60, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
27 7 0.12
28 29 0.48
29 24 0.40
ACGTcount: A:0.25, C:0.32, G:0.13, T:0.30
Consensus pattern (29 bp):
ACATTCATATGGCCCATTTGCCCCAATTC
Found at i:68299167 original size:29 final size:28
Alignment explanation
Indices: 68299104--68299195 Score: 123
Period size: 29 Copynumber: 3.2 Consensus size: 28
68299094 CCCAATCTCA
* * *
68299104 TTTATATGGCCCATTGGCCCAATTCACA
1 TTTATATGGCCCATAGGCCCAAATCACC
*
68299132 TTCATATGGCCCATCAGGCCCAAATCACC
1 TTTATATGGCCCAT-AGGCCCAAATCACC
68299161 TTTATATGGCCCATTAGGCCCAAATCACC
1 TTTATATGGCCCA-TAGGCCCAAATCACC
68299190 -TTATAT
1 TTTATAT
68299196 TCATGCTCAC
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
28 19 0.33
29 37 0.65
30 1 0.02
ACGTcount: A:0.27, C:0.30, G:0.13, T:0.29
Consensus pattern (28 bp):
TTTATATGGCCCATAGGCCCAAATCACC
Found at i:68300110 original size:24 final size:23
Alignment explanation
Indices: 68300083--68300127 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
68300073 TATAAAGAAA
68300083 AGATAGTAAAGCAAAAGGGTTTTC
1 AGAT-GTAAAGCAAAAGGGTTTTC
* * *
68300107 AGATTTTAAGGAAAAGGGTTT
1 AGATGTAAAGCAAAAGGGTTT
68300128 CTGGTAACAG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 14 0.78
24 4 0.22
ACGTcount: A:0.40, C:0.04, G:0.27, T:0.29
Consensus pattern (23 bp):
AGATGTAAAGCAAAAGGGTTTTC
Found at i:68302787 original size:43 final size:43
Alignment explanation
Indices: 68302688--68302795 Score: 146
Period size: 43 Copynumber: 2.5 Consensus size: 43
68302678 GATTTCCGAG
* * *
68302688 ATGAGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTT
1 ATGAGATTACATGTAAGACCATGTATGGGACATTGGAATCGAT
* *
68302731 A-CATGATTTCATGTAAGACCATGTATGGGACATTGGAATCGAT
1 ATGA-GATTACATGTAAGACCATGTATGGGACATTGGAATCGAT
*
68302774 ATGAGATAACATGTAAGACCAT
1 ATGAGATTACATGTAAGACCAT
68302796 ATCTACGATA
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 1 0.02
43 53 0.96
44 1 0.02
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (43 bp):
ATGAGATTACATGTAAGACCATGTATGGGACATTGGAATCGAT
Found at i:68305338 original size:24 final size:25
Alignment explanation
Indices: 68305272--68305343 Score: 92
Period size: 25 Copynumber: 2.9 Consensus size: 25
68305262 CTCTGTTAAT
*
68305272 AACTAGGGCAAAGCCCTTTTTGATT
1 AACTAGGGCAAAGCCCTTTTTGATA
*
68305297 AACTAGGGTAAAGCCCTTTTTCG-TA
1 AACTAGGGCAAAGCCCTTTTT-GATA
* *
68305322 AACTGGGGCAAAGCCTTTTTTG
1 AACTAGGGCAAAGCCCTTTTTG
68305344 CACTTCCTCC
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
24 1 0.02
25 39 0.95
26 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.32
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTTGATA
Found at i:68305415 original size:21 final size:21
Alignment explanation
Indices: 68305389--68305428 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
68305379 TATAATGAAT
* *
68305389 ATATCATGTGTATCTCATAAC
1 ATATCATGTGCATATCATAAC
68305410 ATATCATGTGCATATCATA
1 ATATCATGTGCATATCATA
68305429 TCATGTATCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (21 bp):
ATATCATGTGCATATCATAAC
Found at i:68305428 original size:16 final size:16
Alignment explanation
Indices: 68305404--68305434 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
68305394 ATGTGTATCT
68305404 CATAACATATCATGTG
1 CATAACATATCATGTG
*
68305420 CATATCATATCATGT
1 CATAACATATCATGT
68305435 ATCTCAAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.35
Consensus pattern (16 bp):
CATAACATATCATGTG
Found at i:68313369 original size:25 final size:25
Alignment explanation
Indices: 68313341--68313413 Score: 110
Period size: 25 Copynumber: 2.9 Consensus size: 25
68313331 CCTCTTTTAA
68313341 TAACTGGGGCAAAGCCCTTTTTGAT
1 TAACTGGGGCAAAGCCCTTTTTGAT
* *
68313366 TAACTGGGGCAAAGCCCTTTTCGGT
1 TAACTGGGGCAAAGCCCTTTTTGAT
* *
68313391 AAACTGGGGCAAAGCCCCTTTTG
1 TAACTGGGGCAAAGCCCTTTTTG
68313414 CACTTCCTCT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
TAACTGGGGCAAAGCCCTTTTTGAT
Found at i:68313369 original size:50 final size:50
Alignment explanation
Indices: 68313315--68313413 Score: 121
Period size: 50 Copynumber: 2.0 Consensus size: 50
68313305 TCTTTATCAT
** *
68313315 TTAACTGGAGGCCTAGCCTCTTTT-AAT-AACTGGGGCAAAGCCCTTTTTGA
1 TTAACTGG-GGCAAAGCC-CTTTTCAATAAACTGGGGCAAAGCCCCTTTTGA
**
68313365 TTAACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCCTTTTG
1 TTAACTGGGGCAAAGCCCTTTTCAATAAACTGGGGCAAAGCCCCTTTTG
68313414 CACTTCCTCT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
48 5 0.12
49 8 0.19
50 29 0.69
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.29
Consensus pattern (50 bp):
TTAACTGGGGCAAAGCCCTTTTCAATAAACTGGGGCAAAGCCCCTTTTGA
Found at i:68315880 original size:63 final size:63
Alignment explanation
Indices: 68315801--68315927 Score: 227
Period size: 63 Copynumber: 2.0 Consensus size: 63
68315791 AATCATAAAT
* * *
68315801 ACCTTAGTGATGATTGATGACCAATTTGAAATCATTTGGAAAGTTTAGGAAATAGTCACAAAA
1 ACCTTAGTGACGATTGAGGACCAAATTGAAATCATTTGGAAAGTTTAGGAAATAGTCACAAAA
68315864 ACCTTAGTGACGATTGAGGACCAAATTGAAATCATTTGGAAAGTTTAGGAAATAGTCACAAAA
1 ACCTTAGTGACGATTGAGGACCAAATTGAAATCATTTGGAAAGTTTAGGAAATAGTCACAAAA
68315927 A
1 A
68315928 TTTGGAAACA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.41, C:0.12, G:0.20, T:0.28
Consensus pattern (63 bp):
ACCTTAGTGACGATTGAGGACCAAATTGAAATCATTTGGAAAGTTTAGGAAATAGTCACAAAA
Found at i:68319463 original size:27 final size:27
Alignment explanation
Indices: 68319398--68319493 Score: 81
Period size: 27 Copynumber: 3.6 Consensus size: 27
68319388 GGTTTTCCAT
68319398 AAAGGCTATTCTTTTGTAATATG--CCAA
1 AAAGGCTATTCTTTTG-AA-ATGCACCAA
* * * * *
68319425 AAAAGATGTTCTTTT-AAACTTCACCAC
1 AAAGGCTATTCTTTTGAAA-TGCACCAA
* *
68319452 AAAGGCTATTCTTTTGTAATGCGCCAA
1 AAAGGCTATTCTTTTGAAATGCACCAA
68319479 AAAGGCTATTCTTTT
1 AAAGGCTATTCTTTT
68319494 CTAACATGCG
Statistics
Matches: 53, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
24 1 0.02
25 3 0.06
27 47 0.89
28 2 0.04
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (27 bp):
AAAGGCTATTCTTTTGAAATGCACCAA
Found at i:68325034 original size:16 final size:15
Alignment explanation
Indices: 68325013--68325047 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
68325003 TGAAATGGTA
68325013 AGAATAGATATGTATC
1 AGAATAGATATGTA-C
*
68325029 AGAATAGTTATGTAC
1 AGAATAGATATGTAC
68325044 AGAA
1 AGAA
68325048 ACTATATATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.46, C:0.06, G:0.20, T:0.29
Consensus pattern (15 bp):
AGAATAGATATGTAC
Found at i:68328071 original size:24 final size:22
Alignment explanation
Indices: 68328030--68328074 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
68328020 CGAGTAATCA
*
68328030 CATTTCATATACATGTATCATT
1 CATTTCATATACAGGTATCATT
68328052 CATTTCATATATCAAGGTATCAT
1 CATTTCATATA-C-AGGTATCAT
68328075 GTAACATCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 11 0.55
23 1 0.05
24 8 0.40
ACGTcount: A:0.33, C:0.18, G:0.07, T:0.42
Consensus pattern (22 bp):
CATTTCATATACAGGTATCATT
Found at i:68330128 original size:122 final size:120
Alignment explanation
Indices: 68329909--68330221 Score: 430
Period size: 122 Copynumber: 2.6 Consensus size: 120
68329899 ATTACCACAA
* * ** * *
68329909 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
* * *
68329974 CGGATATATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTC
66 CGGATATATCAACTCGCACAAATGCCTGCGGGTCTTAGCCCGG--ATATATCAACTC
* *
68330031 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTGCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
*
68330096 CGGATTTATCAACTCGCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
66 CGGATATATCAACTCGCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
* * * * *
68330151 GCACAAATACCTTCGGGTCTTAGCCCGGATAAAATC-ACTAGCACAATTGCCTTCGGGACTTAGC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
*
68330215 CTGGATA
65 CCGGATA
68330222 AAATTCAAAT
Statistics
Matches: 169, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
120 69 0.41
121 4 0.02
122 96 0.57
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (120 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
CGGATATATCAACTCGCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
Found at i:68330225 original size:40 final size:40
Alignment explanation
Indices: 68329909--68330221 Score: 430
Period size: 40 Copynumber: 7.8 Consensus size: 40
68329899 ATTACCACAA
* * ** *
68329909 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
68329949 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
68329989 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGG--ATATATCAACTC
*
68330031 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
68330071 GCACAAATGCCTGCGGGTCTTAGCCCGGATTTATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
68330111 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* * *
68330151 GCACAAATACCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * *
68330191 GCACAATTGCCTTCGGGACTTAGCCTGGATA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATA
68330222 AAATTCAAAT
Statistics
Matches: 248, Mismatches: 22, Indels: 7
0.90 0.08 0.03
Matches are distributed among these distances:
39 1 0.00
40 206 0.83
41 4 0.02
42 37 0.15
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:68340669 original size:35 final size:35
Alignment explanation
Indices: 68340630--68340804 Score: 152
Period size: 35 Copynumber: 5.0 Consensus size: 35
68340620 GTATGTACAT
*
68340630 ATGTGATGATGTATTGAACTTGTATATTTGGCCAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * *
68340665 ATGTGATGTTATATTAAACTTGAATATTTGACTAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * * * *
68340700 GTGTGATGTTTTATTGTACTTGTATATTCGGTCAT
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * *
68340735 ATATGATGGTATATTGTACTTGTATATTCGGCCAT
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * *
68340770 ATGTGATGATATAATGAACCATGTGTATTTGGCCA
1 ATGTGATGATATATTGAA-CTTGTATATTTGGCCA
68340805 TACAAGTAAG
Statistics
Matches: 111, Mismatches: 28, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
35 98 0.88
36 13 0.12
ACGTcount: A:0.27, C:0.10, G:0.21, T:0.42
Consensus pattern (35 bp):
ATGTGATGATATATTGAACTTGTATATTTGGCCAC
Found at i:68358573 original size:35 final size:35
Alignment explanation
Indices: 68358534--68358692 Score: 174
Period size: 35 Copynumber: 4.5 Consensus size: 35
68358524 GTATGTACAT
* *
68358534 ATGTGATGATGTATTGAACTTGTATATTTGGCCAC
1 ATGTGATGATATATTGAACTTGTATATTCGGCCAC
* * * * *
68358569 ATGTGATGTTATATTAAACTTGAATATTCGACTAC
1 ATGTGATGATATATTGAACTTGTATATTCGGCCAC
* * * * *
68358604 ATGTGATGTTTTATTGAACTTGTATATTTGGTCAT
1 ATGTGATGATATATTGAACTTGTATATTCGGCCAC
* * *
68358639 ATATGATGATATATTGTACTTGTATATTCGGCCAT
1 ATGTGATGATATATTGAACTTGTATATTCGGCCAC
*
68358674 ATGTGATGATATAATGAAC
1 ATGTGATGATATATTGAAC
68358693 CATGTGTATT
Statistics
Matches: 100, Mismatches: 24, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
35 100 1.00
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (35 bp):
ATGTGATGATATATTGAACTTGTATATTCGGCCAC
Found at i:68358619 original size:70 final size:70
Alignment explanation
Indices: 68358534--68358692 Score: 192
Period size: 70 Copynumber: 2.3 Consensus size: 70
68358524 GTATGTACAT
* *
68358534 ATGTGATGATGTATTGAACTTGTATATTTGGCCACATGTGATGTTATATTAAACTTGAATATTCG
1 ATGTGATGATGTATTGAACTTGTATATTTGGCCACATATGATGATATATTAAACTTGAATATTCG
68358599 ACTAC
66 ACTAC
* * * * ** *
68358604 ATGTGATGTTTTATTGAACTTGTATATTTGGTCATATATGATGATATATTGTACTTGTATATTCG
1 ATGTGATGATGTATTGAACTTGTATATTTGGCCACATATGATGATATATTAAACTTGAATATTCG
* * *
68358669 GCCAT
66 ACTAC
* *
68358674 ATGTGATGATATAATGAAC
1 ATGTGATGATGTATTGAAC
68358693 CATGTGTATT
Statistics
Matches: 74, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
70 74 1.00
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (70 bp):
ATGTGATGATGTATTGAACTTGTATATTTGGCCACATATGATGATATATTAAACTTGAATATTCG
ACTAC
Found at i:68362609 original size:68 final size:67
Alignment explanation
Indices: 68362537--68362716 Score: 181
Period size: 68 Copynumber: 2.6 Consensus size: 67
68362527 CATCATGTGT
* * *
68362537 ACAAGAGAGCTACGAGATACTATGTAGTAGCTAGGTCACATGTGTGA-T-ACGGGATGTATC-CC
1 ACAAGAGAGCTACGAGATA-TAT-T-GTAGCTAGGTCACATGTGTGATTCAAGGGAAGGA-CACC
68362599 ATGTAG
62 ATGTAG
* * * *
68362605 ACAAGAGAGCTACGGGAGAGATAAATGTAGCTAGGTCGCATGTGTGATTCCAAGTGAAGGACACC
1 ACAAGAGAGCTAC--GAGATAT-ATTGTAGCTAGGTCACATGTGTGATT-CAAGGGAAGGACACC
68362670 ATGTAG
62 ATGTAG
*
68362676 ACAAGAGAGCTACGAGATAAATTG--GCTAGGTCACATGTGTG
1 ACAAGAGAGCTACGAGATATATTGTAGCTAGGTCACATGTGTG
68362717 GTACTAAGTG
Statistics
Matches: 94, Mismatches: 11, Indels: 16
0.78 0.09 0.13
Matches are distributed among these distances:
66 16 0.17
68 36 0.38
69 8 0.09
70 7 0.07
71 27 0.29
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (67 bp):
ACAAGAGAGCTACGAGATATATTGTAGCTAGGTCACATGTGTGATTCAAGGGAAGGACACCATGT
AG
Found at i:68366489 original size:27 final size:27
Alignment explanation
Indices: 68366458--68366635 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
68366448 TAAATTGTAC
68366458 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
68366485 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
68366511 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
68366539 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
68366567 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
68366594 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
68366621 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
68366636 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:68366572 original size:82 final size:81
Alignment explanation
Indices: 68366459--68366614 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
68366449 AAATTGTACA
* *
68366459 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
68366523 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
68366540 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
68366605 TGCGAGTTGA
65 TGCGAATTGA
68366615 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:68366626 original size:82 final size:81
Alignment explanation
Indices: 68366455--68366635 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
68366445 GATTAAATTG
* *
68366455 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
68366520 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
68366536 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
68366600 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
68366618 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
68366636 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:68370201 original size:68 final size:67
Alignment explanation
Indices: 68370129--68370308 Score: 181
Period size: 68 Copynumber: 2.6 Consensus size: 67
68370119 CATCATGTGT
* * *
68370129 ACAAGAGAGCTACGAGATACTATGTAGTAGCTAGGTCACATGTGTGA-T-ACGGGATGTATC-CC
1 ACAAGAGAGCTACGAGATA-TAT-T-GTAGCTAGGTCACATGTGTGATTCAAGGGAAGGA-CACC
68370191 ATGTAG
62 ATGTAG
* * * *
68370197 ACAAGAGAGCTACGGGAGAGATAAATGTAGCTAGGTCGCATGTGTGATTCCAAGTGAAGGACACC
1 ACAAGAGAGCTAC--GAGATAT-ATTGTAGCTAGGTCACATGTGTGATT-CAAGGGAAGGACACC
68370262 ATGTAG
62 ATGTAG
*
68370268 ACAAGAGAGCTACGAGATAAATTG--GCTAGGTCACATGTGTG
1 ACAAGAGAGCTACGAGATATATTGTAGCTAGGTCACATGTGTG
68370309 GTACTAAGTG
Statistics
Matches: 94, Mismatches: 11, Indels: 16
0.78 0.09 0.13
Matches are distributed among these distances:
66 16 0.17
68 36 0.38
69 8 0.09
70 7 0.07
71 27 0.29
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (67 bp):
ACAAGAGAGCTACGAGATATATTGTAGCTAGGTCACATGTGTGATTCAAGGGAAGGACACCATGT
AG
Done.