Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 210 of 322
Found at i:69228237 original size:28 final size:27
Alignment explanation
Indices: 69228206--69228275 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
69228196 TATATCACAT
*
69228206 AGGGGAAAATCAGTCATCTTACCATATA
1 AGGGCAAAAT-AGTCATCTTACCATATA
* *
69228234 AGGGCATAATAGTCATTTTACCATAT-
1 AGGGCAAAATAGTCATCTTACCATATA
* *
69228260 AGGGCAATACAGTCAT
1 AGGGCAAAATAGTCAT
69228276 TTAACCACAA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
26 13 0.36
27 15 0.42
28 8 0.22
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (27 bp):
AGGGCAAAATAGTCATCTTACCATATA
Found at i:69228273 original size:26 final size:27
Alignment explanation
Indices: 69228216--69228282 Score: 84
Period size: 26 Copynumber: 2.5 Consensus size: 27
69228206 AGGGGAAAAT
*
69228216 CAGTCATCTTACCATATAAGGGCATAA
1 CAGTCATTTTACCATATAAGGGCATAA
*
69228243 TAGTCATTTTACCATAT-AGGGCA-ATA
1 CAGTCATTTTACCATATAAGGGCATA-A
*
69228269 CAGTCATTTAACCA
1 CAGTCATTTTACCA
69228283 CAAAAGGGGT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
25 1 0.03
26 19 0.54
27 15 0.43
ACGTcount: A:0.36, C:0.21, G:0.13, T:0.30
Consensus pattern (27 bp):
CAGTCATTTTACCATATAAGGGCATAA
Found at i:69229704 original size:12 final size:12
Alignment explanation
Indices: 69229689--69229728 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
69229679 TTCCTCCCCT
*
69229689 AATCTCTCCTAA
1 AATCTCTCCTCA
*
69229701 AATCCCTCCTCA
1 AATCTCTCCTCA
*
69229713 AACCTCTCCTCA
1 AATCTCTCCTCA
69229725 AATC
1 AATC
69229729 CCTCAACTGA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.30, C:0.42, G:0.00, T:0.28
Consensus pattern (12 bp):
AATCTCTCCTCA
Found at i:69229709 original size:24 final size:24
Alignment explanation
Indices: 69229681--69229732 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
69229671 CCCACTTTTT
* *
69229681 CCTCCCCTAATCTCTCCTAAAATC
1 CCTCCCCAAACCTCTCCTAAAATC
* *
69229705 CCTCCTCAAACCTCTCCTCAAATC
1 CCTCCCCAAACCTCTCCTAAAATC
69229729 CCTC
1 CCTC
69229733 AACTGATCAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.23, C:0.50, G:0.00, T:0.27
Consensus pattern (24 bp):
CCTCCCCAAACCTCTCCTAAAATC
Found at i:69234543 original size:22 final size:22
Alignment explanation
Indices: 69234517--69234564 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
69234507 TGCAAGGCTC
69234517 ACACGCCAGTGTGGTCCAAGGG
1 ACACGCCAGTGTGGTCCAAGGG
* *
69234539 ACACGCCTGTGTGGTCCGAGGG
1 ACACGCCAGTGTGGTCCAAGGG
69234561 ACAC
1 ACAC
69234565 ACCCGTGTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.21, C:0.29, G:0.35, T:0.15
Consensus pattern (22 bp):
ACACGCCAGTGTGGTCCAAGGG
Found at i:69234572 original size:22 final size:22
Alignment explanation
Indices: 69234516--69234572 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
69234506 GTGCAAGGCT
69234516 CACACGCCAGTGTGGTCCAAGGGA
1 CACAC-CC-GTGTGGTCCAAGGGA
* * *
69234540 CACGCCTGTGTGGTCCGAGGGA
1 CACACCCGTGTGGTCCAAGGGA
69234562 CACACCCGTGT
1 CACACCCGTGT
69234573 TGAAGGTCGT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
22 23 0.82
23 1 0.04
24 4 0.14
ACGTcount: A:0.19, C:0.32, G:0.33, T:0.16
Consensus pattern (22 bp):
CACACCCGTGTGGTCCAAGGGA
Found at i:69253598 original size:40 final size:40
Alignment explanation
Indices: 69253543--69253660 Score: 209
Period size: 40 Copynumber: 3.0 Consensus size: 40
69253533 TGGAAAAAAA
*
69253543 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCTCGAAGGCATTCGTGCGGGTTAT
*
69253583 TATAACCGGGTTAAGTTTCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCTCGAAGGCATTCGTGCGGGTTAT
*
69253623 TATAACCGGGTTAAGTCTCGAAGGCATTCGTGCTGGTT
1 TATAACCGGGTTAAGTCTCGAAGGCATTCGTGCGGGTT
69253661 GTTACATCCG
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 74 1.00
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.31
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCTCGAAGGCATTCGTGCGGGTTAT
Found at i:69257544 original size:23 final size:23
Alignment explanation
Indices: 69257518--69257575 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
69257508 ATCGTAGCGT
*
69257518 AGCTGCTAATAGTAACGCAGTAA
1 AGCTGCTAATAGTAACGCAGCAA
69257541 AGCTGCTAATAGTAACGCAGCAA
1 AGCTGCTAATAGTAACGCAGCAA
*
69257564 AGCTCCTAATAG
1 AGCTGCTAATAG
69257576 CAGTAAACGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.21
Consensus pattern (23 bp):
AGCTGCTAATAGTAACGCAGCAA
Found at i:69262732 original size:27 final size:26
Alignment explanation
Indices: 69262688--69262739 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
69262678 CTCACTACAA
*
69262688 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
69262715 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
69262740 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:69264516 original size:29 final size:28
Alignment explanation
Indices: 69264480--69264557 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 28
69264470 TCATGAGATT
69264480 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
* *
69264510 -GCACTAAGTGTGTGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
69264537 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
69264558 GATTATTAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 5 0.12
29 33 0.80
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:69264775 original size:174 final size:174
Alignment explanation
Indices: 69264510--69265533 Score: 2030
Period size: 174 Copynumber: 5.9 Consensus size: 174
69264500 AAATTGTACA
69264510 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
69264575 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
69264640 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
69264684 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
69264749 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
69264814 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
69264858 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
69264923 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
69264988 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
69265032 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
69265097 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
69265162 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
69265206 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
69265271 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
69265336 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
69265380 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
69265445 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
69265510 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
69265534 ACCTTGAGTT
Statistics
Matches: 848, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
174 848 1.00
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:69268320 original size:64 final size:64
Alignment explanation
Indices: 69268245--69268365 Score: 172
Period size: 64 Copynumber: 1.9 Consensus size: 64
69268235 AAACAAATTG
* *
69268245 AATTGGTGAATAGAATAATTTCTACAGTGTCCACCA-GGAAAATGATTGTTCAGGGCGCAAACTA
1 AATTGGCGAATAGAATAATTTCTACAGTGTCCA-CATGGAAAATGATTATTCAGGGCGCAAACTA
* * * *
69268309 AATTGGCGAATAGAATAATTTCTGCATTGTCCACATGGACAATGATTATTCTGGGCG
1 AATTGGCGAATAGAATAATTTCTACAGTGTCCACATGGAAAATGATTATTCAGGGCG
69268366 TAGATGCTTA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
63 2 0.04
64 48 0.96
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (64 bp):
AATTGGCGAATAGAATAATTTCTACAGTGTCCACATGGAAAATGATTATTCAGGGCGCAAACTA
Found at i:69277383 original size:42 final size:42
Alignment explanation
Indices: 69277272--69277435 Score: 161
Period size: 42 Copynumber: 3.9 Consensus size: 42
69277262 TACCATACCA
*
69277272 ATGCCATATCCCAGATAT-AGTCTTACATGAAATATCGTATCG
1 ATGCCATATCCCAGATATGA-TCTTACATGAAATATCATATCG
* * * * * *
69277314 ATGCTGATAGCCCAGCTATGGTCTTACATAAAAAATCATATCG
1 ATGC-CATATCCCAGATATGATCTTACATGAAATATCATATCG
* * *
69277357 ATGCCATATCCCAGATATGATCTTACACGAAGTCTCATA-CTG
1 ATGCCATATCCCAGATATGATCTTACATGAAATATCATATC-G
* * * *
69277399 ATTCCATATCCCAGATATGGTCTTACACGTAATATCA
1 ATGCCATATCCCAGATATGATCTTACATGAAATATCA
69277436 ATAACCTTAA
Statistics
Matches: 98, Mismatches: 21, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
41 1 0.01
42 63 0.64
43 34 0.35
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGATCTTACATGAAATATCATATCG
Found at i:69281177 original size:42 final size:43
Alignment explanation
Indices: 69281109--69281189 Score: 103
Period size: 42 Copynumber: 1.9 Consensus size: 43
69281099 GTTTTACGTG
*
69281109 TAAGACCATGTCTGGGACATCAGCATCG-TATTTGATTTTGTC
1 TAAGACCATGTCTAGGACATCAGCATCGATATTTGATTTTGTC
* * *
69281151 TAAGACCCTGTCTAGGACAGT-GGCATCGATTTTTGATTT
1 TAAGACCATGTCTAGGACA-TCAGCATCGATATTTGATTT
69281190 CATGTAAGAC
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
42 23 0.70
43 10 0.30
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.36
Consensus pattern (43 bp):
TAAGACCATGTCTAGGACATCAGCATCGATATTTGATTTTGTC
Found at i:69281200 original size:43 final size:42
Alignment explanation
Indices: 69281107--69281201 Score: 102
Period size: 42 Copynumber: 2.2 Consensus size: 42
69281097 CTGTTTTACG
* **
69281107 TGTAAGACCATGTCTGGGACATCAGCATCGTATTTGATTTTG
1 TGTAAGACCATGTCTAGGACATCAGCATCGTATTTGATTTCA
* * * *
69281149 TCTAAGACCCTGTCTAGGACAGT-GGCATCGATTTTTGATTTCA
1 TGTAAGACCATGTCTAGGACA-TCAGCATCG-TATTTGATTTCA
69281192 TGTAAGACCA
1 TGTAAGACCA
69281202 CAGCTAGGAC
Statistics
Matches: 42, Mismatches: 9, Indels: 3
0.78 0.17 0.06
Matches are distributed among these distances:
42 24 0.57
43 18 0.43
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (42 bp):
TGTAAGACCATGTCTAGGACATCAGCATCGTATTTGATTTCA
Found at i:69283764 original size:28 final size:27
Alignment explanation
Indices: 69283663--69283764 Score: 71
Period size: 28 Copynumber: 3.5 Consensus size: 27
69283653 TCAGTGTTAA
* *
69283663 CTGGGCCTTAGCCCATATCAATATTAAT
1 CTGGGCC-TAGCCCATATCAGTATCAAT
*
69283691 CTGGGCCATAGCCCCT-TACAGTATCAGAGTAT
1 CTGGGCC-TAGCCCATAT-CAGTATC--A--AT
* *
69283723 ATTAGGCCTAGCCCATATCAGTATCAAT
1 -CTGGGCCTAGCCCATATCAGTATCAAT
69283751 CTGGGCCGTAGCCC
1 CTGGGCC-TAGCCC
69283765 TATTACAAGT
Statistics
Matches: 57, Mismatches: 9, Indels: 16
0.70 0.11 0.20
Matches are distributed among these distances:
27 6 0.11
28 27 0.47
30 2 0.04
32 16 0.28
33 6 0.11
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.26
Consensus pattern (27 bp):
CTGGGCCTAGCCCATATCAGTATCAAT
Found at i:69283784 original size:60 final size:59
Alignment explanation
Indices: 69283666--69283796 Score: 149
Period size: 60 Copynumber: 2.2 Consensus size: 59
69283656 GTGTTAACTG
* *
69283666 GGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATATTA
1 GGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAG-ATCAGAGTATATTA
* * *
69283727 GGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACA-AGTC-GAGATATATTG
1 GGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTACAGA-TCAGAG-TATATTA
*
69283787 GGCCTTGCCC
1 GGCCTAGCCC
69283797 CTATTAACAT
Statistics
Matches: 61, Mismatches: 6, Indels: 7
0.82 0.08 0.09
Matches are distributed among these distances:
59 4 0.07
60 48 0.79
61 9 0.15
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (59 bp):
GGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGATCAGAGTATATTA
Found at i:69283940 original size:27 final size:26
Alignment explanation
Indices: 69283902--69284154 Score: 265
Period size: 27 Copynumber: 9.4 Consensus size: 26
69283892 GCCTCCGTCG
*
69283902 ATCGAGGGTAAAACAGTAATTTTGTAA
1 ATCGAGGGTAAAAC-GTAATTCTGTAA
*
69283929 ATCGAGGGTAAAACGATAATTCTATAA
1 ATCGAGGGTAAAACG-TAATTCTGTAA
* * *
69283956 ATTGAGGGTAAAACGGTAATCCTATAA
1 ATCGAGGGTAAAAC-GTAATTCTGTAA
*
69283983 ATCGAGGGTAAAACGATAATTTTAG-AA
1 ATCGAGGGTAAAACG-TAATTCT-GTAA
*
69284010 ATCGAGGGTAAAATAGTAATTCTGTAA
1 ATCGAGGGTAAAA-CGTAATTCTGTAA
*
69284037 ATCGAGGGTAAAACGATAATTCTATAA
1 ATCGAGGGTAAAACG-TAATTCTGTAA
* *
69284064 ATCGAGTGTAAAACGGTAATTTTGTAA
1 ATCGAGGGTAAAAC-GTAATTCTGTAA
* * *
69284091 ATCAAGGGTAAAACAGTAATTTTGTAT
1 ATCGAGGGTAAAAC-GTAATTCTGTAA
* *
69284118 ATCGAGGGTAAAATGGTAATTCTATAA
1 ATCGAGGGTAAAA-CGTAATTCTGTAA
*
69284145 ATCAAGGGTA
1 ATCGAGGGTA
69284155 CTTTGGTAAT
Statistics
Matches: 192, Mismatches: 25, Indels: 18
0.82 0.11 0.08
Matches are distributed among these distances:
26 4 0.02
27 185 0.96
28 3 0.02
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.28
Consensus pattern (26 bp):
ATCGAGGGTAAAACGTAATTCTGTAA
Found at i:69283987 original size:54 final size:54
Alignment explanation
Indices: 69283902--69284154 Score: 328
Period size: 54 Copynumber: 4.7 Consensus size: 54
69283892 GCCTCCGTCG
* *
69283902 ATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAA
1 ATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAA
* * * * *
69283956 ATTGAGGGTAAAACGGTAATCCTATAAATCGAGGGTAAAACGATAATTTTAGAA
1 ATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAA
**
69284010 ATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAA
1 ATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAA
* * * * * *
69284064 ATCGAGTGTAAAACGGTAATTTTGTAAATCAAGGGTAAAAC-AGTAATTTTGTAT
1 ATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGA-TAATTCTATAA
* * *
69284118 ATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTA
1 ATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
69284155 CTTTGGTAAT
Statistics
Matches: 172, Mismatches: 26, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
53 1 0.01
54 171 0.99
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.28
Consensus pattern (54 bp):
ATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAA
Found at i:69284161 original size:27 final size:27
Alignment explanation
Indices: 69284131--69284436 Score: 333
Period size: 27 Copynumber: 11.3 Consensus size: 27
69284121 GAGGGTAAAA
* * * *
69284131 TGGTAATTCTATAAATCAAGGGTACTT
1 TGGTAATTTTACAAACCAAGGGTATTT
** *
69284158 TGGTAATTTTACAAGTCGAGGGTATTT
1 TGGTAATTTTACAAACCAAGGGTATTT
*** ***
69284185 CAATAATTTTACAGGTCAAGGGTATTT
1 TGGTAATTTTACAAACCAAGGGTATTT
** * * *
69284212 CAGTAATTTCACAAATCAGGGGTATTT
1 TGGTAATTTTACAAACCAAGGGTATTT
* * *
69284239 TGGTAATTTTACAAACTAGGGGTGTTT
1 TGGTAATTTTACAAACCAAGGGTATTT
*
69284266 TGATAATTTTACAAACCAAGGGTATTT
1 TGGTAATTTTACAAACCAAGGGTATTT
* *
69284293 TGGTAATTTTACAAACTAGGGGTATTT
1 TGGTAATTTTACAAACCAAGGGTATTT
**
69284320 TGGTAATTTTGTAAACCAAGGGTATTT
1 TGGTAATTTTACAAACCAAGGGTATTT
*
69284347 TGGTAATTTTACAAACCAGGGGTATTT
1 TGGTAATTTTACAAACCAAGGGTATTT
* *
69284374 TGGTGATTTTATAAACCAAGGGTATTT
1 TGGTAATTTTACAAACCAAGGGTATTT
* *
69284401 TAGTAATTTTACAAACCAGGGGTATTT
1 TGGTAATTTTACAAACCAAGGGTATTT
69284428 TGGTAATTT
1 TGGTAATTT
69284437 GGTAAAGTAA
Statistics
Matches: 236, Mismatches: 43, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 236 1.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
TGGTAATTTTACAAACCAAGGGTATTT
Found at i:69284167 original size:81 final size:81
Alignment explanation
Indices: 69283902--69284154 Score: 357
Period size: 81 Copynumber: 3.1 Consensus size: 81
69283892 GCCTCCGTCG
* * *
69283902 ATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAAC-GATAATTCTATAAATTGAGGGTA
1 ATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACAG-TAATTCTGTAAATCGAGGGTA
*
69283966 AAACGGTAATCCTATAA
65 AAACGGTAATTCTATAA
* *
69283983 ATCGAGGGTAAAACGATAATTTTAG-AAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTA
1 ATCGAGGGTAAAACGGTAATTTT-GTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTA
*
69284047 AAACGATAATTCTATAA
65 AAACGGTAATTCTATAA
* * * *
69284064 ATCGAGTGTAAAACGGTAATTTTGTAAATCAAGGGTAAAACAGTAATTTTGTATATCGAGGGTAA
1 ATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAA
*
69284129 AATGGTAATTCTATAA
66 AACGGTAATTCTATAA
*
69284145 ATCAAGGGTA
1 ATCGAGGGTA
69284155 CTTTGGTAAT
Statistics
Matches: 152, Mismatches: 17, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
80 1 0.01
81 149 0.98
82 2 0.01
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.28
Consensus pattern (81 bp):
ATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAA
AACGGTAATTCTATAA
Found at i:69294027 original size:7 final size:6
Alignment explanation
Indices: 69294011--69294044 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
69294001 GTGTTATTGT
* *
69294011 TTTTTG TTTTTG ATTTTG TTTTCG TTTTTG TTTT
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTT
69294045 GGGAACAAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.03, C:0.03, G:0.15, T:0.79
Consensus pattern (6 bp):
TTTTTG
Found at i:69297410 original size:119 final size:119
Alignment explanation
Indices: 69297199--69297413 Score: 340
Period size: 119 Copynumber: 1.8 Consensus size: 119
69297189 TAAGAATACC
* * * *
69297199 TAGACCCTCAAAGTAACAAATGATTGTTATGCCCTATGTACTAAAGTGACTATTATGCCCTTATG
1 TAGACCCCCAAACTAACAAATGACTGTTATGCCCTATGTACTAAAGTGACGATTATGCCCTTATG
* **
69297264 AGATGTATGTTTGTAATTGAGCATGCCATTAGATGTTGGGTCGATAAGTATATG
66 AGATGTATGATTGTAATCAAGCATGCCATTAGATGTTGGGTCGATAAGTATATG
* * *
69297318 TAGACCCCCAAACTGACAAATGACTGTTGTTCCCTATGTACTAAAGTGACGATTATGCCCTTATG
1 TAGACCCCCAAACTAACAAATGACTGTTATGCCCTATGTACTAAAGTGACGATTATGCCCTTATG
69297383 AGATGTATGATTGTAATCAAGCATGCCATTA
66 AGATGTATGATTGTAATCAAGCATGCCATTA
69297414 CATATATATA
Statistics
Matches: 86, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
119 86 1.00
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.33
Consensus pattern (119 bp):
TAGACCCCCAAACTAACAAATGACTGTTATGCCCTATGTACTAAAGTGACGATTATGCCCTTATG
AGATGTATGATTGTAATCAAGCATGCCATTAGATGTTGGGTCGATAAGTATATG
Found at i:69302788 original size:71 final size:67
Alignment explanation
Indices: 69302711--69302852 Score: 167
Period size: 67 Copynumber: 2.1 Consensus size: 67
69302701 TCACCAGATA
* * * **
69302711 CAGATATTATGGCTAGGCCACCAGAACAGATATATATATGTGGTGAAGCCACCAGATTGCTGCGA
1 CAGATATTATGACGAAGCCACCAGAACAG----ATATATGTGGTGAAGCCACCAGATTGCAACGA
69302776 GGCTGC
62 GGCTGC
* * * *
69302782 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGTGAGGGCACCAGATTGCAACGAGGCT
1 CAGATATTATGACGAAGCCACCAGAACAGATATATGTGGTGAAGCCACCAGATTGCAACGAGGCT
69302847 GC
66 GC
69302849 CAGA
1 CAGA
69302853 ACGTTTCCTC
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
67 38 0.61
71 24 0.39
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.20
Consensus pattern (67 bp):
CAGATATTATGACGAAGCCACCAGAACAGATATATGTGGTGAAGCCACCAGATTGCAACGAGGCT
GC
Found at i:69305533 original size:40 final size:40
Alignment explanation
Indices: 69305435--69305777 Score: 476
Period size: 40 Copynumber: 8.6 Consensus size: 40
69305425 TCCTCGTTCA
* * * * *
69305435 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
69305474 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
69305514 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
69305554 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
69305594 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
69305634 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
69305674 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
69305714 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
69305754 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
69305778 CAGCATTCAA
Statistics
Matches: 280, Mismatches: 20, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
39 37 0.13
40 235 0.84
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:69305786 original size:41 final size:41
Alignment explanation
Indices: 69305709--69305786 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
69305699 TTAGTATCTC
* * *
69305709 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
69305750 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
69305787 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:69316984 original size:34 final size:34
Alignment explanation
Indices: 69316924--69316990 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 34
69316914 TGCATATCTG
* *
69316924 TACTGTTACTGTTACTGAAATAGGCTAAGGCCCA
1 TACTGATACTGTTACTGAAATAGGCTAAAGCCCA
* *
69316958 TACTGATACTGTTACT-ATATTGGGCTAAAGCCC
1 TACTGATACTGTTACTGA-AATAGGCTAAAGCCC
69316991 TAACTGAAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 1 0.04
34 27 0.96
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (34 bp):
TACTGATACTGTTACTGAAATAGGCTAAAGCCCA
Found at i:69318431 original size:24 final size:24
Alignment explanation
Indices: 69318399--69318449 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
69318389 TTTGAATGAT
*
69318399 TGACTAATTCTTTTTAAACATCTA
1 TGACCAATTCTTTTTAAACATCTA
69318423 TGACCAATTCTTTTTAAACATCTA
1 TGACCAATTCTTTTTAAACATCTA
69318447 TGA
1 TGA
69318450 GTGATTTGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.33, C:0.18, G:0.06, T:0.43
Consensus pattern (24 bp):
TGACCAATTCTTTTTAAACATCTA
Found at i:69318848 original size:19 final size:18
Alignment explanation
Indices: 69318820--69318855 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
69318810 TGGACACAGG
69318820 GACACACCCGTGTGCCTTC
1 GACACACCCGTGT-CCTTC
*
69318839 GACACGCCCGTGTCCTT
1 GACACACCCGTGTCCTT
69318856 AGGCCGTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.14, C:0.42, G:0.22, T:0.22
Consensus pattern (18 bp):
GACACACCCGTGTCCTTC
Found at i:69320718 original size:45 final size:45
Alignment explanation
Indices: 69320589--69320989 Score: 543
Period size: 45 Copynumber: 8.8 Consensus size: 45
69320579 GGTGAATTGT
* * * * *
69320589 CGATGTCATGTCCCAGACATGGTCTTACATTGGCTCACATGTCGATGC
1 CGATGCCATGT-CCA-ACATGGTCTTACACTGGCTCACA-ATCAACGC
*
69320637 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAATCAACGC
1 CGATGCCATGT-CCA-ACATGGTCTTACACTGGCTCACAATCAACGC
* *
69320684 CGATGCCATGTCCAACATGGTCTTACACTGGCTCAAAATCCAA-GT
1 CGATGCCATGTCCAACATGGTCTTACACTGGCTCACAAT-CAACGC
69320729 CGATGCCATGTCCAACATGGTCTTACACTGGCTCACAATCAACGC
1 CGATGCCATGTCCAACATGGTCTTACACTGGCTCACAATCAACGC
* * * *
69320774 TGATGCCATGTCTAACATGGTCTTACACTAGCTCACAATCAACGT
1 CGATGCCATGTCCAACATGGTCTTACACTGGCTCACAATCAACGC
**
69320819 CGATGCCATGTCCAACATGGTCTTACACTGGCTCACAATCAATAC
1 CGATGCCATGTCCAACATGGTCTTACACTGGCTCACAATCAACGC
* * *
69320864 CAATGCCATGTCCAACATGGTCTTACACTGGCTCATAATCAACAC
1 CGATGCCATGTCCAACATGGTCTTACACTGGCTCACAATCAACGC
* * *
69320909 CGTTGCCATTTTCAACATGGTCTTACACTGGCTCACAATCAACGC
1 CGATGCCATGTCCAACATGGTCTTACACTGGCTCACAATCAACGC
* *
69320954 TGATGCCATGTCCATCATGGTCTTACACTGGCTCAC
1 CGATGCCATGTCCAACATGGTCTTACACTGGCTCAC
69320990 GTGTCACCCA
Statistics
Matches: 316, Mismatches: 35, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
44 3 0.01
45 255 0.81
46 6 0.02
47 16 0.05
48 36 0.11
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.26
Consensus pattern (45 bp):
CGATGCCATGTCCAACATGGTCTTACACTGGCTCACAATCAACGC
Found at i:69321530 original size:30 final size:31
Alignment explanation
Indices: 69321490--69321550 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
69321480 CATAATTCAT
69321490 ACTTTGAC-AAAATGACCATTTTGCCCCTAG
1 ACTTTGACAAAAATGACCATTTTGCCCCTAG
* * *
69321520 ACTTTTACAAAAATTACGATTTTGCCCCTAG
1 ACTTTGACAAAAATGACCATTTTGCCCCTAG
69321551 GCTCGTAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 7 0.26
31 20 0.74
ACGTcount: A:0.31, C:0.25, G:0.11, T:0.33
Consensus pattern (31 bp):
ACTTTGACAAAAATGACCATTTTGCCCCTAG
Found at i:69328788 original size:67 final size:64
Alignment explanation
Indices: 69328645--69328828 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
69328635 ATATAGTTCG
* * * * * *
69328645 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTATCTCGT
1 GCTCTCTTGT-CTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACA-TATATCCCGT
69328707 A
64 A
* * *
69328708 GCTCTCTTGTCTACATGGTGTCATTCACTTGGAACCACGCATGCGACCTAGCTACATATATCCCG
1 GCTCTCTTGTCTACATGGTGT-A--CACATAGAACCACCCATGCGACCTAGCTACATATATCCCG
69328773 TA
63 TA
* *
69328775 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACAT
1 GCTCTCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACAT
69328829 CATAATGTCT
Statistics
Matches: 103, Mismatches: 12, Indels: 11
0.82 0.10 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.17
64 28 0.27
66 24 0.23
67 30 0.29
68 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.17, T:0.30
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACATATATCCCGTA
Found at i:69330877 original size:11 final size:11
Alignment explanation
Indices: 69330861--69330900 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
69330851 GTATGTTTAG
*
69330861 ATTTTTTTAAT
1 ATTTTTTAAAT
69330872 ATTTTTTAAACAT
1 ATTTTTT-AA-AT
69330885 ATTTTTTAAAT
1 ATTTTTTAAAT
69330896 ATTTT
1 ATTTT
69330901 AATATTTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
11 14 0.54
12 3 0.12
13 9 0.35
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (11 bp):
ATTTTTTAAAT
Found at i:69330886 original size:13 final size:13
Alignment explanation
Indices: 69330870--69330894 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69330860 GATTTTTTTA
69330870 ATATTTTTTAAAC
1 ATATTTTTTAAAC
69330883 ATATTTTTTAAA
1 ATATTTTTTAAA
69330895 TATTTTAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (13 bp):
ATATTTTTTAAAC
Found at i:69331324 original size:67 final size:67
Alignment explanation
Indices: 69331216--69331350 Score: 189
Period size: 67 Copynumber: 2.0 Consensus size: 67
69331206 TAGTACAAAC
* *
69331216 TCTTTCCTACTTACTCTTTGAGAATTGCCACAACATTTTAATTGTCATAGCATATTATTAGTCAT
1 TCTTTCCCACTTACTCTTTGAGAATTGCCACAACATTTTAATTGCCATAGCATATTATTAGTCAT
69331281 AA
66 AA
* * * * * * *
69331283 TCTTTCCCACTTATTTTTTGAGAATTTCCACAGCATTTTAATTGCCTTAGCATATTTTTATTCAT
1 TCTTTCCCACTTACTCTTTGAGAATTGCCACAACATTTTAATTGCCATAGCATATTATTAGTCAT
69331348 AA
66 AA
69331350 T
1 T
69331351 TGATTTTATT
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
67 59 1.00
ACGTcount: A:0.27, C:0.19, G:0.08, T:0.45
Consensus pattern (67 bp):
TCTTTCCCACTTACTCTTTGAGAATTGCCACAACATTTTAATTGCCATAGCATATTATTAGTCAT
AA
Found at i:69333964 original size:14 final size:14
Alignment explanation
Indices: 69333945--69333972 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
69333935 GACACAGAAA
69333945 ATCAAGTGGTTGAT
1 ATCAAGTGGTTGAT
69333959 ATCAAGTGGTTGAT
1 ATCAAGTGGTTGAT
69333973 TACTTGTCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.07, G:0.29, T:0.36
Consensus pattern (14 bp):
ATCAAGTGGTTGAT
Found at i:69338148 original size:20 final size:20
Alignment explanation
Indices: 69338125--69338193 Score: 57
Period size: 20 Copynumber: 3.2 Consensus size: 20
69338115 GATCTGAACA
69338125 CATGAGTTGTGGTCTGAGTT
1 CATGAGTTGTGGTCTGAGTT
* * **
69338145 CATGATATATGTGACATCTGAACT
1 CATGA-GT-TGTG--GTCTGAGTT
*
69338169 CATGAGTTGTGGTCTAAGTT
1 CATGAGTTGTGGTCTGAGTT
69338189 CATGA
1 CATGA
69338194 TTTATGTGAC
Statistics
Matches: 36, Mismatches: 9, Indels: 8
0.68 0.17 0.15
Matches are distributed among these distances:
20 15 0.42
21 1 0.03
22 8 0.22
23 1 0.03
24 11 0.31
ACGTcount: A:0.25, C:0.13, G:0.26, T:0.36
Consensus pattern (20 bp):
CATGAGTTGTGGTCTGAGTT
Found at i:69338173 original size:44 final size:44
Alignment explanation
Indices: 69338116--69338204 Score: 151
Period size: 44 Copynumber: 2.0 Consensus size: 44
69338106 AAAGTATGTG
*
69338116 ATCTGAACACATGAGTTGTGGTCTGAGTTCATGATATATGTGAC
1 ATCTGAACACATGAGTTGTGGTCTAAGTTCATGATATATGTGAC
* *
69338160 ATCTGAACTCATGAGTTGTGGTCTAAGTTCATGATTTATGTGAC
1 ATCTGAACACATGAGTTGTGGTCTAAGTTCATGATATATGTGAC
69338204 A
1 A
69338205 CATGTTCGGG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.36
Consensus pattern (44 bp):
ATCTGAACACATGAGTTGTGGTCTAAGTTCATGATATATGTGAC
Found at i:69343782 original size:24 final size:24
Alignment explanation
Indices: 69343754--69343802 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
69343744 GTTTTGCAAA
*
69343754 CCTTGAGAGACAAGCAGTTGTATG
1 CCTTGAGAGACAAACAGTTGTATG
69343778 CCTTGAGAGACAAACAGTTGTATG
1 CCTTGAGAGACAAACAGTTGTATG
69343802 C
1 C
69343803 TAAGTTTAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (24 bp):
CCTTGAGAGACAAACAGTTGTATG
Found at i:69350227 original size:48 final size:48
Alignment explanation
Indices: 69350166--69350304 Score: 152
Period size: 48 Copynumber: 2.9 Consensus size: 48
69350156 GGGTTGATGA
* * * *
69350166 GATCCCGTATAAGACCATATATGGGATATGGCATCGGCTTCGACATGT
1 GATCCCATGTAAGACCATATATGGGACATGGCATCGGCATCGACATGT
* * * ***
69350214 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGTTTTGT
1 GATCCCATGTAAGACCATATATGGGACATGGCATCGGCATCGACATGT
* ** *
69350262 GATCCCATGTAAGACCATGTCCGGGACATGGCATTGGCATCGA
1 GATCCCATGTAAGACCATATATGGGACATGGCATCGGCATCGA
69350305 TATGAGAACA
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 79 1.00
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (48 bp):
GATCCCATGTAAGACCATATATGGGACATGGCATCGGCATCGACATGT
Found at i:69352629 original size:16 final size:16
Alignment explanation
Indices: 69352610--69352647 Score: 53
Period size: 14 Copynumber: 2.4 Consensus size: 16
69352600 ATGACCTCCC
69352610 AATAATAGCATGGTAA
1 AATAATAGCATGGTAA
69352626 AAT-AT-GCATGGTAA
1 AATAATAGCATGGTAA
69352640 AACTAATA
1 AA-TAATA
69352648 TAGATATTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 5
0.79 0.00 0.21
Matches are distributed among these distances:
14 11 0.58
15 3 0.16
16 5 0.26
ACGTcount: A:0.50, C:0.08, G:0.16, T:0.26
Consensus pattern (16 bp):
AATAATAGCATGGTAA
Found at i:69355839 original size:40 final size:40
Alignment explanation
Indices: 69355795--69355875 Score: 119
Period size: 40 Copynumber: 2.0 Consensus size: 40
69355785 AGCTACTGTT
* *
69355795 CAAATGCCTTCGGGACATAGCTCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
*
69355835 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
69355875 C
1 C
69355876 NNNNNNNNNN
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
40 35 0.95
41 2 0.05
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:69374690 original size:79 final size:80
Alignment explanation
Indices: 69374574--69374726 Score: 195
Period size: 79 Copynumber: 1.9 Consensus size: 80
69374564 AGCCCAGTTA
* * * *
69374574 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCACCAATGCCTTCG
1 TAGTAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATAGTAACTTAGCA-CAAAGCCTTCG
69374638 GG-CTTAGCCTGGAAT
65 GGACTTAGCCTGGAAT
* ** *
69374653 TAGTAACTCGCACAAAGGCCTTC-GGATTTGAGTCCGGATATAGTCACTTAGCACAAAGCCTTCG
1 TAGTAACTCGCACAAAGGCCTTCGGGACTT-AACCCGGATATAGTAACTTAGCACAAAGCCTTCG
69374717 GGACTTAGCC
65 GGACTTAGCC
69374727 CGGATAATTC
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
78 5 0.08
79 47 0.75
80 11 0.17
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
TAGTAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
GACTTAGCCTGGAAT
Found at i:69374730 original size:40 final size:40
Alignment explanation
Indices: 69374527--69374732 Score: 215
Period size: 40 Copynumber: 5.2 Consensus size: 40
69374517 CGGAATTTAA
** *
69374527 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
69374567 CCAGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
69374607 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
69374646 CTGGA-ATTAGTAACTCGCACAAAGGCCTTC-GGATTTGAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTT-AGC
* *
69374686 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
69374726 CCGGATA
1 CCGGATA
69374733 ATTCCATATA
Statistics
Matches: 137, Mismatches: 22, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 88 0.64
41 14 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:69375109 original size:79 final size:81
Alignment explanation
Indices: 69375000--69375182 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
69374990 TACTCGTTCA
* * *
69375000 AATGCCTTCGGGACATAGCCCAG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTT-GGGATCTTAACCCGG
* *
69375063 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* * **
69375080 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGTACAAATGCCTTTGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTGGGATCTTAACCCGGA
*
69375143 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
69375159 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
69375183 CATCATTCTA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 57 0.65
80 28 0.32
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTGGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:69375141 original size:452 final size:452
Alignment explanation
Indices: 69374275--69375182 Score: 1719
Period size: 452 Copynumber: 2.0 Consensus size: 452
69374265 TATAACTAAA
*
69374275 CGGATAATTCCATATATACATATTCTCAAATCAATCCTACTTCACATTCCAACCCTTATATTCAT
1 CGGATAATTCCATATATACATATTCTCAAATCAATCCTACTTCACATTCCAACCCCTATATTCAT
*
69374340 ACATAAGGGATCATCTTAGCCAAATACCGGAAGCTCATTACTCGACTGAGCGAATATTATTCGAA
66 ACATAAGGGATCATCTTAGCCAAATACCGGAAGCTCATTACTCGACCGAGCGAATATTATTCGAA
69374405 GGGAATCAACTATTCCAATGCACATACGAAACATACCTCATTGTTGGGATTTTACAAGCGTATTA
131 GGGAATCAACTATTCCAATGCACATACGAAACATACCTCATTGTTGGGATTTTACAAGCGTATTA
69374470 ACTAAAATTTTTACAGCAAGATCGCTCATTCCCGAATCACGTACCTTCGGAATTTAACCGGATAT
196 ACTAAAATTTTTACAGCAAGATCGCTCATTCCCGAATCACGTACCTTCGGAATTTAACCGGATAT
69374535 AGCTACTCGTTCAAATGCCTTCGGGACATAGCCCAGTTATAGTAACTCGCACAAATGCCTTCGGG
261 AGCTACTCGTTCAAATGCCTTCGGGACATAGCCCAGTTATAGTAACTCGCACAAATGCCTTCGGG
*
69374600 ACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCTGGAATTAGTAACTCGCA
326 ACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
69374665 CAAAGGCCTTCGGATTTGAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCC
391 CAAAGGCCTTCGGATTTGAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCC
*
69374727 CGGATAATTCCATATATACATATTCTCAAATCATTCCTACTTCACATTCCAACCCCTATATTCAT
1 CGGATAATTCCATATATACATATTCTCAAATCAATCCTACTTCACATTCCAACCCCTATATTCAT
*
69374792 ACATAAGGGATCATCTTAGCCAAATACCGGAAGCTCATTACTCGACCGAGCGAATATTATTTGAA
66 ACATAAGGGATCATCTTAGCCAAATACCGGAAGCTCATTACTCGACCGAGCGAATATTATTCGAA
*
69374857 GGGAATCATCTATTCCAATGCACATACGAAACATACCTCATTGTTGGGATTTTACAAGCGTATTA
131 GGGAATCAACTATTCCAATGCACATACGAAACATACCTCATTGTTGGGATTTTACAAGCGTATTA
69374922 ACTAAAATTTTTACAGCAAGATCGCTCATTCCCGAATCACGTACCTTCGGAATTTAACCGGATAT
196 ACTAAAATTTTTACAGCAAGATCGCTCATTCCCGAATCACGTACCTTCGGAATTTAACCGGATAT
69374987 AGCTACTCGTTCAAATGCCTTCGGGACATAGCCCAGTTATAGTAACTCGCACAAATGCCTTCGGG
261 AGCTACTCGTTCAAATGCCTTCGGGACATAGCCCAGTTATAGTAACTCGCACAAATGCCTTCGGG
*
69375052 ACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGTA
326 ACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
* *
69375117 CAAATGCCTTTGGATCTT-AGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCC
391 CAAAGGCCTTCGGAT-TTGAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCC
69375179 CGGA
1 CGGA
69375183 CATCATTCTA
Statistics
Matches: 446, Mismatches: 9, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
452 444 1.00
453 2 0.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (452 bp):
CGGATAATTCCATATATACATATTCTCAAATCAATCCTACTTCACATTCCAACCCCTATATTCAT
ACATAAGGGATCATCTTAGCCAAATACCGGAAGCTCATTACTCGACCGAGCGAATATTATTCGAA
GGGAATCAACTATTCCAATGCACATACGAAACATACCTCATTGTTGGGATTTTACAAGCGTATTA
ACTAAAATTTTTACAGCAAGATCGCTCATTCCCGAATCACGTACCTTCGGAATTTAACCGGATAT
AGCTACTCGTTCAAATGCCTTCGGGACATAGCCCAGTTATAGTAACTCGCACAAATGCCTTCGGG
ACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
CAAAGGCCTTCGGATTTGAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCC
Found at i:69375182 original size:40 final size:40
Alignment explanation
Indices: 69374979--69375182 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
69374969 CGGAATTTAA
** *
69374979 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
69375019 CCAGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
69375059 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
69375098 CCGGA-ATTAGTAACTCGTACAAATGCCTT-TGGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
69375138 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
69375178 CCGGA
1 CCGGA
69375183 CATCATTCTA
Statistics
Matches: 136, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 31 0.23
40 92 0.68
41 11 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:69375450 original size:203 final size:203
Alignment explanation
Indices: 69375101--69375506 Score: 776
Period size: 203 Copynumber: 2.0 Consensus size: 203
69375091 GCTTAGCCCG
* *
69375101 GAATTAGTAACTCGTACAAATGCCTTTGGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCT
1 GAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCT
*
69375166 TCGGGACTTAGCCCGGACATCATTCTAATAACCATGCACATTTATCAATAAATCATGACACATCC
66 TCGGGACTTAGCCCGGACATCATTCGAATAACCATGCACATTTATCAATAAATCATGACACATCC
*
69375231 GTATTTCATTTTCATTACCAAGGCTCAAACACAAGACACTTATCACACTTGCAATTTCGGCTCAA
131 GTATTTCATTTTCATTACCAAAGCTCAAACACAAGACACTTATCACACTTGCAATTTCGGCTCAA
69375296 TAGCCACA
196 TAGCCACA
69375304 GAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCT
1 GAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCT
69375369 TCGGGACTTAGCCCGGACATCATTCGAATAACCATGCACATTTATCAATAAATCATGACACATCC
66 TCGGGACTTAGCCCGGACATCATTCGAATAACCATGCACATTTATCAATAAATCATGACACATCC
69375434 GTATTTCATTTTCATTACCAAAGCTCAAACACAAGACACTTATCACACTTGCAATTTCGGCTCAA
131 GTATTTCATTTTCATTACCAAAGCTCAAACACAAGACACTTATCACACTTGCAATTTCGGCTCAA
69375499 TAGCCACA
196 TAGCCACA
69375507 TACAAAGAGC
Statistics
Matches: 199, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
203 199 1.00
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (203 bp):
GAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCT
TCGGGACTTAGCCCGGACATCATTCGAATAACCATGCACATTTATCAATAAATCATGACACATCC
GTATTTCATTTTCATTACCAAAGCTCAAACACAAGACACTTATCACACTTGCAATTTCGGCTCAA
TAGCCACA
Found at i:69375961 original size:152 final size:151
Alignment explanation
Indices: 69375686--69375988 Score: 579
Period size: 152 Copynumber: 2.0 Consensus size: 151
69375676 CACACAAGTT
*
69375686 AAACTTATTAAAGTCTCATTATGCTAGCTTATGGTCGAATTGACAAGAAATTTAATAGGTCATAT
1 AAACTTATTAAAGTCTCATTATACTAGCTTATGGTCGAATTGACAAGAAATTTAATAGGTCATAT
*
69375751 AGCCACCTTCTAGCTCAAATACACAATGGTCATACGCATTTTTAATCACCTTAAGCAATTTAATA
66 AGCCACCTTCTAGCTCAAATACACAATGGTCATACACATTTTTAATCACCTTAAGCAATTTAATA
69375816 CAATTCATTCGAACATCAAAA
131 CAATTCATTCGAACATCAAAA
69375837 AAACTTATTAAAGTCTCATTATACTAGCTTATGGTCGAATATGACAAGAAATTTAATAGGTCATA
1 AAACTTATTAAAGTCTCATTATACTAGCTTATGGTCGAAT-TGACAAGAAATTTAATAGGTCATA
69375902 TAGCCACCTTCTAGCTCAAATACACAATGGTCATACACATTTTTAATCACCTTAAGCAATTTAAT
65 TAGCCACCTTCTAGCTCAAATACACAATGGTCATACACATTTTTAATCACCTTAAGCAATTTAAT
69375967 ACAATTCATTCGAACATCAAAA
130 ACAATTCATTCGAACATCAAAA
69375989 GAGAAGCTCA
Statistics
Matches: 149, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
151 39 0.26
152 110 0.74
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.32
Consensus pattern (151 bp):
AAACTTATTAAAGTCTCATTATACTAGCTTATGGTCGAATTGACAAGAAATTTAATAGGTCATAT
AGCCACCTTCTAGCTCAAATACACAATGGTCATACACATTTTTAATCACCTTAAGCAATTTAATA
CAATTCATTCGAACATCAAAA
Found at i:69376559 original size:169 final size:169
Alignment explanation
Indices: 69376280--69376616 Score: 647
Period size: 169 Copynumber: 2.0 Consensus size: 169
69376270 GTTCAAAACT
69376280 TGGCTAATACACATATATACACTATTAAAGCATCCTCTCCCTTTCCATCAATTCAACACATGCAT
1 TGGCTAATACACATATATACACTATTAAAGCATCCTCTCCCTTTCCATCAATTCAACACATGCAT
*
69376345 TACTCATTAATATAAAAAATTATATTCGGCCTTGGTACACAACTTGCTAGCCAATTCTTCTCCAT
66 TACTCATTAATATAAAAAATTATATTCGGCCTTGGCACACAACTTGCTAGCCAATTCTTCTCCAT
69376410 CTAGCAACTAATGCACATATGTGCTCATTTGTTAGACTA
131 CTAGCAACTAATGCACATATGTGCTCATTTGTTAGACTA
69376449 TGGCTAATACACATATATACACTATTAAAGCATCCTCTCCCTTTCCATCAATTCAACACATGCAT
1 TGGCTAATACACATATATACACTATTAAAGCATCCTCTCCCTTTCCATCAATTCAACACATGCAT
* *
69376514 TACTCATTAATATACAAAATTATATTCGGCCTTGGCACACAACTTGCTAGCCGATTCTTCTCCAT
66 TACTCATTAATATAAAAAATTATATTCGGCCTTGGCACACAACTTGCTAGCCAATTCTTCTCCAT
69376579 CTAGCAACTAATGCACATATGTGCTCATTTGTTAGACT
131 CTAGCAACTAATGCACATATGTGCTCATTTGTTAGACT
69376617 CTACTTCATC
Statistics
Matches: 165, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
169 165 1.00
ACGTcount: A:0.32, C:0.26, G:0.10, T:0.33
Consensus pattern (169 bp):
TGGCTAATACACATATATACACTATTAAAGCATCCTCTCCCTTTCCATCAATTCAACACATGCAT
TACTCATTAATATAAAAAATTATATTCGGCCTTGGCACACAACTTGCTAGCCAATTCTTCTCCAT
CTAGCAACTAATGCACATATGTGCTCATTTGTTAGACTA
Found at i:69377395 original size:250 final size:250
Alignment explanation
Indices: 69376955--69377453 Score: 948
Period size: 250 Copynumber: 2.0 Consensus size: 250
69376945 TACCTTAGTC
*
69376955 TAGCAACCCACCATAGCCGATTTTCTCAAAGCTCTTCCCCCTTCTTCTCTTTCTCCCATTCGGCC
1 TAGCAACCCACCATAGCCGATTTTCTCAAAGCTCTTCCCCCTTCTTCCCTTTCTCCCATTCGGCC
*
69377020 AAGAACAACATGAAACTTCTTTCCCTTTTTCTTTTTTCAATTCTCGGCAATGGGGGGGCAACCAC
66 AAGAACAACATGAAACTTCTTTCCCTTTTTCTTTTTTCAATTCACGGCAATGGGGGGGCAACCAC
69377085 ACACACATTTTTTTTTTGTCATCATTTACCTTCCCATTATTATTTTATTGCCCATACTCCTTATT
131 ACACACATTTTTTTTTTGTCATCATTTACCTTCCCATTATTATTTTATTGCCCATACTCCTTATT
69377150 TTA-TTTTTTTCTAACACAAACCATTATCACAACATGTTTTATGACATGTTTTGT
196 TTATTTTTTTTCTAACACAAACCATTATCACAACATGTTTTATGACATGTTTTGT
69377204 TAGCAACCCACCATAGCCGATTTTCTCAAAGCTCTTCCCCCTTCTTCCCTTTCTCCCATTCGGCC
1 TAGCAACCCACCATAGCCGATTTTCTCAAAGCTCTTCCCCCTTCTTCCCTTTCTCCCATTCGGCC
69377269 AAGAACAACATGAGAACTTCTTTCCCTTTTTCTTTTTTCAATTCACGGCAATGGGGGGGGCAACC
66 AAGAACAACATGA-AACTTCTTTCCCTTTTTCTTTTTTCAATTCACGGCAAT-GGGGGGGCAACC
69377334 ACACACACA-TTTTTTTTTGTCATCATTTACCTTCCCATTATTATTTTATTGCCCATACTCCTTA
129 ACACACACATTTTTTTTTTGTCATCATTTACCTTCCCATTATTATTTTATTGCCCATACTCCTTA
69377398 TTTTATTTTTTTTCTAACACAAACCATTATCACAACATGTTTTATGACATGTTTTG
194 TTTTATTTTTTTTCTAACACAAACCATTATCACAACATGTTTTATGACATGTTTTG
69377454 CCCATCACCC
Statistics
Matches: 245, Mismatches: 2, Indels: 4
0.98 0.01 0.02
Matches are distributed among these distances:
249 77 0.31
250 97 0.40
251 71 0.29
ACGTcount: A:0.23, C:0.27, G:0.10, T:0.39
Consensus pattern (250 bp):
TAGCAACCCACCATAGCCGATTTTCTCAAAGCTCTTCCCCCTTCTTCCCTTTCTCCCATTCGGCC
AAGAACAACATGAAACTTCTTTCCCTTTTTCTTTTTTCAATTCACGGCAATGGGGGGGCAACCAC
ACACACATTTTTTTTTTGTCATCATTTACCTTCCCATTATTATTTTATTGCCCATACTCCTTATT
TTATTTTTTTTCTAACACAAACCATTATCACAACATGTTTTATGACATGTTTTGT
Found at i:69380315 original size:13 final size:13
Alignment explanation
Indices: 69380297--69380322 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
69380287 AGGGGTTTGT
69380297 TTATCTAAACTAA
1 TTATCTAAACTAA
69380310 TTATCTAAACTAA
1 TTATCTAAACTAA
69380323 GGATGCACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:69383324 original size:20 final size:20
Alignment explanation
Indices: 69383301--69383368 Score: 55
Period size: 20 Copynumber: 3.2 Consensus size: 20
69383291 TCATCTGAAC
69383301 TCATGAGTTGTGGTCTGAGT
1 TCATGAGTTGTGGTCTGAGT
* * **
69383321 TCATGATATATGTGACATCTGAAC
1 TCATGA-GT-TGTG--GTCTGAGT
*
69383345 TCATGAGTTGTGGTCTAAGT
1 TCATGAGTTGTGGTCTGAGT
69383365 TCAT
1 TCAT
69383369 AATTTATGTG
Statistics
Matches: 35, Mismatches: 9, Indels: 8
0.67 0.17 0.15
Matches are distributed among these distances:
20 14 0.40
21 1 0.03
22 8 0.23
23 1 0.03
24 11 0.31
ACGTcount: A:0.24, C:0.13, G:0.25, T:0.38
Consensus pattern (20 bp):
TCATGAGTTGTGGTCTGAGT
Found at i:69383348 original size:44 final size:44
Alignment explanation
Indices: 69383292--69383381 Score: 153
Period size: 44 Copynumber: 2.0 Consensus size: 44
69383282 GGAACTATGT
* *
69383292 CATCTGAACTCATGAGTTGTGGTCTGAGTTCATGATATATGTGA
1 CATCTGAACTCATGAGTTGTGGTCTAAGTTCATAATATATGTGA
*
69383336 CATCTGAACTCATGAGTTGTGGTCTAAGTTCATAATTTATGTGA
1 CATCTGAACTCATGAGTTGTGGTCTAAGTTCATAATATATGTGA
69383380 CA
1 CA
69383382 CATTATATGG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.37
Consensus pattern (44 bp):
CATCTGAACTCATGAGTTGTGGTCTAAGTTCATAATATATGTGA
Found at i:69387780 original size:45 final size:45
Alignment explanation
Indices: 69387675--69387937 Score: 293
Period size: 45 Copynumber: 5.9 Consensus size: 45
69387665 TTTTCTCAAA
* * * * *
69387675 TCACCGGCAT-TTTGCCTGCTAGGCTC-GAGGCCCGATTA-TCATT
1 TCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
* * *
69387718 TCACCAGCATTATAGCCTGCTAGGCTCGAAA-GCTC-AGATAGTATC
1 TCACCGGCATAATAGCCTGCTAGGCTC-AAAGGCCCGA-ATAGTATC
* * * *
69387763 TCACCTGTATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATT
1 TCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * *
69387808 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAATGTC
1 TCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * * *
69387853 TCACTGACATAATAGCCTACTAGGCTCAAAGGCCCGAATAGTGTC
1 TCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
69387898 TCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCCGAATA
69387938 TAATACTAGC
Statistics
Matches: 188, Mismatches: 25, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
43 9 0.05
44 18 0.10
45 158 0.84
46 3 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (45 bp):
TCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:69387977 original size:38 final size:38
Alignment explanation
Indices: 69387930--69388053 Score: 178
Period size: 38 Copynumber: 3.3 Consensus size: 38
69387920 GGCTCAAAGG
* *
69387930 CCCGAATATAATACTAGCACTAAGCCTACGGGATTTAA
1 CCCGGATATAATACTAGCACTAAGCCTGCGGGATTTAA
* * *
69387968 CCTGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACTAGCACTAAGCCTGCGGGATTTAA
*
69388006 CCCAGATATAATACTAGCA-TGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACTAGCACT-AAGCCTGCGGGATTTAA
69388044 CCCGGATATA
1 CCCGGATATA
69388054 CATCAAATAT
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
38 75 1.00
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.23
Consensus pattern (38 bp):
CCCGGATATAATACTAGCACTAAGCCTGCGGGATTTAA
Found at i:69392295 original size:24 final size:24
Alignment explanation
Indices: 69392248--69392295 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
69392238 ACCATGTTTG
*
69392248 TGTTAATTAAAATAGTTTAATTAA
1 TGTTAATTAAAATAGTATAATTAA
*
69392272 TGTTAATTAAACTA-TATAAGTTAA
1 TGTTAATTAAAATAGTATAA-TTAA
69392296 ATTAGTGGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.19
24 17 0.81
ACGTcount: A:0.46, C:0.02, G:0.08, T:0.44
Consensus pattern (24 bp):
TGTTAATTAAAATAGTATAATTAA
Found at i:69397809 original size:46 final size:48
Alignment explanation
Indices: 69397756--69397921 Score: 198
Period size: 48 Copynumber: 3.5 Consensus size: 48
69397746 TATGTATGCT
* *
69397756 AGTGTAAGACATGTCTGGGACATGCATCGAC-C-ACATACTA-AGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGCCTCGAGATA-TACAGAGCC
* * *
69397802 AGTGTAAGACATGTCTAGGACATGCATTGTCCTCGAGATATACCG-GCC
1 AGTGTAAGACATGTCTGGGACATGCATCG-CCTCGAGATATACAGAGCC
* *
69397850 AATGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACA-AGCT
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCTCGAGATATACAGAGCC
*
69397898 AGTGTAAGACCTGTCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
69397922 GTGTCAGCTT
Statistics
Matches: 102, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
46 27 0.26
47 1 0.01
48 68 0.67
49 6 0.06
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCTCGAGATATACAGAGCC
Found at i:69399792 original size:20 final size:20
Alignment explanation
Indices: 69399754--69399792 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
69399744 ATCAAATTGA
* *
69399754 ATTGTCATTAAATGGATTTG
1 ATTGTAATTAAATGCATTTG
*
69399774 ATTGTAATTAGATGCATTT
1 ATTGTAATTAAATGCATTT
69399793 ATATAATTGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.31, C:0.05, G:0.18, T:0.46
Consensus pattern (20 bp):
ATTGTAATTAAATGCATTTG
Found at i:69402965 original size:2 final size:2
Alignment explanation
Indices: 69402955--69402997 Score: 70
Period size: 2 Copynumber: 22.0 Consensus size: 2
69402945 GAGTTTTTAG
*
69402955 CT CT TT CT CT C- CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
69402996 CT
1 CT
69402998 GAAATCTCTG
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
CT
Found at i:69404227 original size:2 final size:2
Alignment explanation
Indices: 69404220--69404247 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
69404210 GTGAGACTCT
69404220 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
69404248 TGAAAACATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:69413123 original size:28 final size:29
Alignment explanation
Indices: 69413083--69413137 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
69413073 CATAGGCGAT
*
69413083 GACGCGGGCGTGT-CTAGGCTGTGTGAGG
1 GACGCGGGCGTGTGCTAGGCCGTGTGAGG
*
69413111 GACGCGGGCGTGTGCTCGGCCGTGTGA
1 GACGCGGGCGTGTGCTAGGCCGTGTGA
69413138 AAATCTCTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 13 0.54
29 11 0.46
ACGTcount: A:0.09, C:0.22, G:0.49, T:0.20
Consensus pattern (29 bp):
GACGCGGGCGTGTGCTAGGCCGTGTGAGG
Found at i:69413692 original size:42 final size:42
Alignment explanation
Indices: 69413633--69413712 Score: 106
Period size: 42 Copynumber: 1.9 Consensus size: 42
69413623 ATGTCTTCTA
* *
69413633 ATCAAGCCTAATATGAGTCCAAGGGAGCCGAGAGCCATTCCG
1 ATCAAGCCCAAGATGAGTCCAAGGGAGCCGAGAGCCATTCCG
*** *
69413675 ATCAAGCCCAAGATGAGTCTGTGGGAGCCGAGATCCAT
1 ATCAAGCCCAAGATGAGTCCAAGGGAGCCGAGAGCCAT
69413713 GCTCCAACTT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 32 1.00
ACGTcount: A:0.30, C:0.25, G:0.28, T:0.17
Consensus pattern (42 bp):
ATCAAGCCCAAGATGAGTCCAAGGGAGCCGAGAGCCATTCCG
Found at i:69418560 original size:30 final size:30
Alignment explanation
Indices: 69418525--69418582 Score: 100
Period size: 30 Copynumber: 1.9 Consensus size: 30
69418515 CACAGCCATA
69418525 ACACACGGGCGTGTGG-TCTACCCGTGTGTC
1 ACACACGGGCGTGTGGATC-ACCCGTGTGTC
69418555 ACACACGGGCGTGTGGATCACCCGTGTG
1 ACACACGGGCGTGTGGATCACCCGTGTG
69418583 GAAGTGCCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
30 25 0.93
31 2 0.07
ACGTcount: A:0.16, C:0.29, G:0.34, T:0.21
Consensus pattern (30 bp):
ACACACGGGCGTGTGGATCACCCGTGTGTC
Found at i:69431940 original size:27 final size:27
Alignment explanation
Indices: 69431910--69432087 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
69431900 ATATTGAGTC
* * * *
69431910 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
69431937 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
69431964 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
69431992 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
69432019 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
69432046 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
69432073 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69432088 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:69432049 original size:82 final size:81
Alignment explanation
Indices: 69431931--69432086 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
69431921 TGCTATATAA
* *
69431931 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
69431996 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
69432013 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
69432077 CACTTAGTGC
65 CACTTAGTGC
69432087 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:69438149 original size:20 final size:20
Alignment explanation
Indices: 69438124--69438163 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
69438114 TGTTTCACGT
69438124 TCGACGTGGTCTTAAAGACA
1 TCGACGTGGTCTTAAAGACA
69438144 TCGACGTGGTCTTAAAGACA
1 TCGACGTGGTCTTAAAGACA
69438164 ATTAAGTATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (20 bp):
TCGACGTGGTCTTAAAGACA
Found at i:69439689 original size:57 final size:58
Alignment explanation
Indices: 69439563--69439691 Score: 138
Period size: 58 Copynumber: 2.2 Consensus size: 58
69439553 ACCTCATTAC
* * *
69439563 AAAAAGGATTTAGCCCGGATGGGTAATCCTAATACAAATCCTCTCGAGCATATGTTAT
1 AAAAAGGATTTAGCCCGGACGGGTAATCCTAATACAAATCCTCTAGAGCATATGTCAT
* ** * * *
69439621 AGATTGGATTTAGTCTGGACGGGTAATCC-AGAT-CAAGCTCCT-TAGAGCATATGTCAT
1 AAAAAGGATTTAGCCCGGACGGGTAATCCTA-ATACAA-ATCCTCTAGAGCATATGTCAT
69439678 AAAAAGGATTTAGC
1 AAAAAGGATTTAGC
69439692 TTAGACTGGT
Statistics
Matches: 56, Mismatches: 13, Indels: 5
0.76 0.18 0.07
Matches are distributed among these distances:
57 27 0.48
58 29 0.52
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (58 bp):
AAAAAGGATTTAGCCCGGACGGGTAATCCTAATACAAATCCTCTAGAGCATATGTCAT
Found at i:69442617 original size:25 final size:25
Alignment explanation
Indices: 69442578--69442700 Score: 112
Period size: 25 Copynumber: 5.0 Consensus size: 25
69442568 TCATTAGGGA
*
69442578 TTACCGATT-GCAGCTCGTGAGAGC
1 TTACCGATTCTCAGCTCGTGAGAGC
* *
69442602 CTATCGATTCTCAGCTCGT-ATGAGC
1 TTACCGATTCTCAGCTCGTGA-GAGC
*
69442627 TTACCGATT-GCAGCTCGTGAGAGC
1 TTACCGATTCTCAGCTCGTGAGAGC
* * * *
69442651 TTAGCAATTCTCAGCTCAT-ATGAAC
1 TTACCGATTCTCAGCTCGTGA-GAGC
69442676 TTACCGATT-TACAGCTCGTGAGAGC
1 TTACCGATTCT-CAGCTCGTGAGAGC
69442701 ATATTGATTC
Statistics
Matches: 77, Mismatches: 15, Indels: 13
0.73 0.14 0.12
Matches are distributed among these distances:
24 29 0.38
25 47 0.61
26 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.28
Consensus pattern (25 bp):
TTACCGATTCTCAGCTCGTGAGAGC
Found at i:69442650 original size:49 final size:49
Alignment explanation
Indices: 69442578--69442724 Score: 186
Period size: 49 Copynumber: 3.0 Consensus size: 49
69442568 TCATTAGGGA
*
69442578 TTACCGATTGCAGCTCGTGAGAGCCTATCGATTCTCAGCTCGTATGAGC
1 TTACCGATTGCAGCTCGTGAGAGCATATCGATTCTCAGCTCGTATGAGC
* * * * *
69442627 TTACCGATTGCAGCTCGTGAGAGCTTAGCAATTCTCAGCTCATATGAAC
1 TTACCGATTGCAGCTCGTGAGAGCATATCGATTCTCAGCTCGTATGAGC
* * ** *
69442676 TTACCGATTTACAGCTCGTGAGAGCATATTGATTCAAAACTCGTATGAG
1 TTACCGA-TTGCAGCTCGTGAGAGCATATCGATTCTCAGCTCGTATGAG
69442725 AATACATGTA
Statistics
Matches: 82, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
49 51 0.62
50 31 0.38
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (49 bp):
TTACCGATTGCAGCTCGTGAGAGCATATCGATTCTCAGCTCGTATGAGC
Found at i:69445602 original size:39 final size:39
Alignment explanation
Indices: 69445443--69445602 Score: 248
Period size: 39 Copynumber: 4.1 Consensus size: 39
69445433 ATGCAAGACA
*
69445443 CTGAAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGAAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
* *
69445482 CTGGAAATGTATCCGGGCCAAAGTCCTGCAGGCTTCGTG
1 CTGAAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
* *
69445521 CTGGAAATGTATCAGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGAAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
** *
69445560 CTGAAAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGAAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
69445599 CTGA
1 CTGA
69445603 TAATATAATT
Statistics
Matches: 111, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 111 1.00
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (39 bp):
CTGAAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
Found at i:69448600 original size:26 final size:25
Alignment explanation
Indices: 69448529--69448624 Score: 113
Period size: 26 Copynumber: 3.8 Consensus size: 25
69448519 GAGGAAGTGC
*
69448529 AAAAGGGCTATGCCCCAG-TTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
69448553 AAAAGGGCTTTGCCCTATTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
69448578 AAAAGGGCTTTTGCCCCAGTTTATCA
1 AAAAGGGC-TTTGCCCCAGTTTACCG
*
69448604 AAAAGGGCTTTTGCCCTAGTT
1 AAAAGGGC-TTTGCCCCAGTT
69448625 ATTAAAAGAG
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
24 15 0.24
25 14 0.23
26 33 0.53
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:69448637 original size:25 final size:26
Alignment explanation
Indices: 69448539--69448637 Score: 75
Period size: 25 Copynumber: 3.9 Consensus size: 26
69448529 AAAAGGGCTA
*
69448539 TGCCCCAG-TTACCGAAAAG-GGC-TT
1 TGCCCCAGTTTATC-AAAAGAGGCTTT
* * *
69448563 TGCCCTATTTTACCGAAAAG-GGCTTT
1 TGCCCCAGTTTATC-AAAAGAGGCTTT
69448589 TGCCCCAGTTTATCAAAA-AGGGCTTT
1 TGCCCCAGTTTATCAAAAGA-GGCTTT
* *
69448615 TGCCCTAG-TTATTAAAAGAGGCT
1 TGCCCCAGTTTATCAAAAGAGGCT
69448638 AGGCCTCTAG
Statistics
Matches: 63, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
24 6 0.10
25 30 0.48
26 27 0.43
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
TGCCCCAGTTTATCAAAAGAGGCTTT
Found at i:69448883 original size:31 final size:31
Alignment explanation
Indices: 69448844--69448927 Score: 118
Period size: 31 Copynumber: 2.8 Consensus size: 31
69448834 TTGTTACAGT
69448844 AAAA-GCTTCGGCCCAGTGATATGAATAATG
1 AAAAGGCTTCGGCCCAGTGATATGAATAATG
*
69448874 AAAAGGCTTCGGCCTAGTGATATGAATAATG
1 AAAAGGCTTCGGCCCAGTGATATGAATAATG
* * *
69448905 TAAAGGCTTTGGCGCAGT-ATATG
1 AAAAGGCTTCGGCCCAGTGATATG
69448928 CTGAGATTTA
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 9 0.19
31 39 0.81
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.26
Consensus pattern (31 bp):
AAAAGGCTTCGGCCCAGTGATATGAATAATG
Found at i:69451988 original size:40 final size:40
Alignment explanation
Indices: 69451933--69452193 Score: 312
Period size: 40 Copynumber: 6.5 Consensus size: 40
69451923 TATTCGAATG
* * * *
69451933 ATATCCGGGCAAAGTCCCAAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
*
69451973 ATATCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACT
* * * *
69452013 ATATCTGGGCTAAGACCCGAAGGCATTTGTCCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* * * *
69452053 ATATCCGAGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* * *
69452093 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* *
69452133 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACT
*
69452173 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
69452194 ATACTTGGGT
Statistics
Matches: 190, Mismatches: 28, Indels: 7
0.84 0.12 0.03
Matches are distributed among these distances:
39 14 0.07
40 172 0.91
41 4 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
Found at i:69452146 original size:120 final size:119
Alignment explanation
Indices: 69451933--69452193 Score: 355
Period size: 120 Copynumber: 2.2 Consensus size: 119
69451923 TATTCGAATG
* * * * *
69451933 ATATCCGGGCAAAGTCCCAAAGGCTTTTGTGCTAGTGACTATATCCGGACTAAGTCCCGAAGGCA
1 ATATCC-GGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
* *
69451998 TTTGTGCGAGTTGCTATATCTGGGCTAAGACCCGAAGGCATTTGTCCGAGTTACT
65 TTTATGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAGTTACT
**
69452053 ATATCCGAGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGTTAAGTCCCGAAGGCA
1 ATATCCG-GCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
* * **
69452118 TTTATGCTAG-TGACTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
65 TTTATGCGAGTTG-CTATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAGTTACT
69452173 ATATCCGGCTAA-ATCCCGAAG
1 ATATCCGGCTAAGA-CCCGAAG
69452194 ATACTTGGGT
Statistics
Matches: 125, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
118 1 0.01
119 15 0.12
120 109 0.87
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (119 bp):
ATATCCGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCAT
TTATGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAGTTACT
Found at i:69452438 original size:28 final size:28
Alignment explanation
Indices: 69452397--69452458 Score: 115
Period size: 28 Copynumber: 2.2 Consensus size: 28
69452387 AGCGTGAAGT
69452397 AAGTATGATTATGAGAATGTGCATATATG
1 AAGT-TGATTATGAGAATGTGCATATATG
69452426 AAGTTGATTATGAGAATGTGCATATATG
1 AAGTTGATTATGAGAATGTGCATATATG
69452454 AAGTT
1 AAGTT
69452459 ATTCATTTAG
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 29 0.88
29 4 0.12
ACGTcount: A:0.37, C:0.03, G:0.24, T:0.35
Consensus pattern (28 bp):
AAGTTGATTATGAGAATGTGCATATATG
Found at i:69452489 original size:22 final size:22
Alignment explanation
Indices: 69452449--69452490 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
69452439 GAATGTGCAT
*
69452449 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
69452471 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
69452491 TCGAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:69459982 original size:25 final size:25
Alignment explanation
Indices: 69459953--69460000 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
69459943 TTATAATATG
** *
69459953 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACCATTTTACCCCTAGGTA
69459978 AAAATGACCATTTTACCCCTAGG
1 AAAATGACCATTTTACCCCTAGG
69460001 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (25 bp):
AAAATGACCATTTTACCCCTAGGTA
Found at i:69460184 original size:25 final size:26
Alignment explanation
Indices: 69460132--69460227 Score: 126
Period size: 26 Copynumber: 3.8 Consensus size: 26
69460122 GAGGAAGTGC
* *
69460132 AAAAGGGC-TATGCCCTAG-TTACCG
1 AAAAGGGCTTTTGCCCCAGTTTACCG
*
69460156 AAAAGGGC-TTTGCCCTAGTTTACCG
1 AAAAGGGCTTTTGCCCCAGTTTACCG
* *
69460181 AAAAGGGCTTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTTGCCCCAGTTTACCG
69460207 AAAAGGGCTTTTGCCCCAGTT
1 AAAAGGGCTTTTGCCCCAGTT
69460228 ATTAAAATAG
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
24 17 0.26
25 14 0.21
26 35 0.53
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTTTGCCCCAGTTTACCG
Found at i:69460489 original size:31 final size:31
Alignment explanation
Indices: 69460451--69460531 Score: 144
Period size: 31 Copynumber: 2.6 Consensus size: 31
69460441 TACAGTAAAG
69460451 GCTTCGGCCCAGTGATATGAATAATGAAAAA
1 GCTTCGGCCCAGTGATATGAATAATGAAAAA
* *
69460482 GCTTCGGCCCAGTGATATGAATAATGTAAAG
1 GCTTCGGCCCAGTGATATGAATAATGAAAAA
69460513 GCTTCGGCCCAGTGATATG
1 GCTTCGGCCCAGTGATATG
69460532 TTGAGATTGA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.25
Consensus pattern (31 bp):
GCTTCGGCCCAGTGATATGAATAATGAAAAA
Found at i:69462226 original size:29 final size:29
Alignment explanation
Indices: 69462194--69462257 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 29
69462184 TGTCTCAACA
* *
69462194 GTGTGTGACACACGGCCAGGTGAGTGACC
1 GTGTGTGACACACGACCAGGTGAATGACC
*
69462223 GTGTGTGACACACGACTAGGTGAATGACC
1 GTGTGTGACACACGACCAGGTGAATGACC
69462252 GTGTGT
1 GTGTGT
69462258 CCCCTGCAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
GTGTGTGACACACGACCAGGTGAATGACC
Found at i:69468062 original size:11 final size:11
Alignment explanation
Indices: 69468034--69468063 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
69468024 AGAAGAAGAA
69468034 AAAGAAAAACT
1 AAAGAAAAACT
69468045 AAGAGAAAAACT
1 AA-AGAAAAACT
69468057 AAAGAAA
1 AAAGAAA
69468064 CCTTGAGCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.73, C:0.07, G:0.13, T:0.07
Consensus pattern (11 bp):
AAAGAAAAACT
Found at i:69468728 original size:20 final size:20
Alignment explanation
Indices: 69468703--69468740 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
69468693 GTGAAACACA
69468703 TTGCTGATGGAAATATAGCG
1 TTGCTGATGGAAATATAGCG
69468723 TTGCTGATGGAAATATAG
1 TTGCTGATGGAAATATAG
69468741 AAAGGCATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.32
Consensus pattern (20 bp):
TTGCTGATGGAAATATAGCG
Found at i:69475112 original size:28 final size:28
Alignment explanation
Indices: 69475080--69475144 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
69475070 ATTTACTAGA
*
69475080 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
69475108 ATACCCCTATGTGTGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
69475136 ATACCCCTA
1 ATACCCCTA
69475145 GAGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.09, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:69475308 original size:27 final size:27
Alignment explanation
Indices: 69475250--69475339 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
69475240 AGGAAGCGTC
69475250 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
69475278 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
69475305 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
69475334 CTGGTG
1 CTGGTG
69475340 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:69475358 original size:55 final size:56
Alignment explanation
Indices: 69475250--69475364 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
69475240 AGGAAGCGTC
* *
69475250 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
69475305 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
69475361 CTGG
1 CTGG
69475365 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:69475828 original size:19 final size:19
Alignment explanation
Indices: 69475804--69475842 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
69475794 TTTTAATTAT
* *
69475804 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
69475823 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
69475842 T
1 T
69475843 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:69477347 original size:10 final size:10
Alignment explanation
Indices: 69477334--69477365 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
69477324 TTTCATAATT
*
69477334 CATCATCAAA
1 CATCATAAAA
69477344 CATCATAAAA
1 CATCATAAAA
69477354 CATCATAAAA
1 CATCATAAAA
69477364 CA
1 CA
69477366 CATGAATTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.56, C:0.25, G:0.00, T:0.19
Consensus pattern (10 bp):
CATCATAAAA
Found at i:69477351 original size:20 final size:20
Alignment explanation
Indices: 69477326--69477378 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
69477316 CACCAAGCTT
*
69477326 TCATAATTCATCATCAAACA
1 TCATAATTCATCATAAAACA
**
69477346 TCATAAAACATCATAAAACA
1 TCATAATTCATCATAAAACA
69477366 -CATGAATTCATCA
1 TCAT-AATTCATCA
69477379 ATGGAAACTT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
19 3 0.11
20 24 0.89
ACGTcount: A:0.49, C:0.23, G:0.02, T:0.26
Consensus pattern (20 bp):
TCATAATTCATCATAAAACA
Found at i:69479555 original size:30 final size:30
Alignment explanation
Indices: 69479519--69479586 Score: 111
Period size: 30 Copynumber: 2.3 Consensus size: 30
69479509 GGGGGCAATC
*
69479519 CGTGTGTCACAC-GCGGCCTAGACACACGCA
1 CGTGTGTCACACAG-GGCCTAGACAAACGCA
69479549 CGTGTGTCACACAGGGCCTAGACAAACGCA
1 CGTGTGTCACACAGGGCCTAGACAAACGCA
69479579 CGTGTGTC
1 CGTGTGTC
69479587 TACCCGTGTG
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
30 35 0.97
31 1 0.03
ACGTcount: A:0.24, C:0.32, G:0.28, T:0.16
Consensus pattern (30 bp):
CGTGTGTCACACAGGGCCTAGACAAACGCA
Found at i:69487166 original size:47 final size:47
Alignment explanation
Indices: 69487112--69487242 Score: 174
Period size: 47 Copynumber: 2.8 Consensus size: 47
69487102 TACAATCGAT
* *
69487112 AAGTACCTATACCATTGCCCGTAGCCAAATCAAGGTAACTTATC-CTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTC-A
* * *
69487159 GAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAGCTCCTCTCA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCA
* * *
69487206 AAATACCTATATCATGGCCTGTAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
69487243 TTATTCGCAC
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 73 0.99
48 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCA
Found at i:69487825 original size:16 final size:14
Alignment explanation
Indices: 69487788--69487829 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
69487778 ATTTTATTTA
69487788 TTTCTCAATTTAAC
1 TTTCTCAATTTAAC
*
69487802 -TCCTCAATTTACAC
1 TTTCTCAATTTA-AC
69487816 TTTTCTCAATTTAA
1 -TTTCTCAATTTAA
69487830 TCCCTAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
13 10 0.43
14 2 0.09
15 1 0.04
16 10 0.43
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.48
Consensus pattern (14 bp):
TTTCTCAATTTAAC
Found at i:69490957 original size:20 final size:21
Alignment explanation
Indices: 69490914--69490959 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
69490904 ACTGTTTTGT
69490914 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
69490934 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
69490953 TATGGGC
1 TATGGGC
69490960 ATGATCCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:69492704 original size:19 final size:16
Alignment explanation
Indices: 69492666--69492697 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
69492656 TAATTAGGGC
*
69492666 TAAATTGCAAAAATAA
1 TAAATTGCAAAAAAAA
69492682 TAAATTGCAAAAAAAA
1 TAAATTGCAAAAAAAA
69492698 GTTTAAAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.66, C:0.06, G:0.06, T:0.22
Consensus pattern (16 bp):
TAAATTGCAAAAAAAA
Found at i:69498061 original size:27 final size:26
Alignment explanation
Indices: 69498017--69498168 Score: 108
Period size: 27 Copynumber: 5.6 Consensus size: 26
69498007 TTAGTTTACC
* * *
69498017 AAATTACTGAAATGCCCTCTATTTGTA
1 AAATTAC-CAAATACCCTCGATTTGTA
**
69498044 AAATTACCAAAGTACCCTCGATTTACA
1 AAATTACCAAA-TACCCTCGATTTGTA
* *** *
69498071 GAATTACCGTTTTACCCTCGATTAGTA
1 AAATTACC-AAATACCCTCGATTTGTA
* *
69498098 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACC-AAATACCCTCGATTTGTA
**
69498125 AAATTACCGAAATA-CCTCAGGCTTGTA
1 AAATTACC-AAATACCCTC-GATTTGTA
69498152 AAATTACCGAAATACCC
1 AAATTACC-AAATACCC
69498169 CTGTAGGGTA
Statistics
Matches: 98, Mismatches: 23, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
26 6 0.06
27 90 0.92
28 2 0.02
ACGTcount: A:0.36, C:0.22, G:0.11, T:0.30
Consensus pattern (26 bp):
AAATTACCAAATACCCTCGATTTGTA
Found at i:69498130 original size:54 final size:54
Alignment explanation
Indices: 69498031--69498133 Score: 134
Period size: 54 Copynumber: 1.9 Consensus size: 54
69498021 TACTGAAATG
* * * *
69498031 CCCTCTATTTGTAAAATTACCAAAGTACCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTAGTAAAATTACCAAAATACCCTCGATTTACAAAATTACCGTTTTA
* * **
69498085 CCCTCGATTAGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCG
1 CCCTCGATTAGTAAAATTACCAAAATACCCTCGATTTACAAAATTACCG
69498134 AAATACCTCA
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 41 1.00
ACGTcount: A:0.33, C:0.23, G:0.11, T:0.33
Consensus pattern (54 bp):
CCCTCGATTAGTAAAATTACCAAAATACCCTCGATTTACAAAATTACCGTTTTA
Found at i:69498183 original size:27 final size:27
Alignment explanation
Indices: 69498153--69498240 Score: 122
Period size: 27 Copynumber: 3.3 Consensus size: 27
69498143 AGGCTTGTAA
69498153 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
69498180 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
69498207 AATTACTGAGATACCCTTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
69498234 AATTACC
1 AATTACC
69498241 ATTTTGCCCC
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:69498519 original size:24 final size:25
Alignment explanation
Indices: 69498443--69498512 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
69498433 AGGAAGTACT
* *
69498443 AAAAGGGTTTTGCCCCAGTTTACCGA
1 AAAAGGGCTTTGCCCCAGTTTATC-A
69498469 AAAA-GGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
69498493 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
69498513 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
24 5 0.12
25 32 0.78
26 4 0.10
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:69498525 original size:24 final size:24
Alignment explanation
Indices: 69498442--69498525 Score: 89
Period size: 25 Copynumber: 3.4 Consensus size: 24
69498432 GAGGAAGTAC
* * *
69498442 TAAAAGGGTTTTGCCCCAGTTTACC
1 TAAAAAGGCTTTGCCCCAGTTTA-T
*
69498467 GAAAAAGGCTTTGCCCCAGTTTAT
1 TAAAAAGGCTTTGCCCCAGTTTAT
*
69498491 CAAAAAGGGCTTTGCCCCAG-TTAT
1 TAAAAA-GGCTTTGCCCCAGTTTAT
69498515 TAAAAGAGGCT
1 TAAAA-AGGCT
69498526 AGGCCTCCAG
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
24 17 0.33
25 34 0.67
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.27
Consensus pattern (24 bp):
TAAAAAGGCTTTGCCCCAGTTTAT
Found at i:69498536 original size:50 final size:50
Alignment explanation
Indices: 69498443--69498537 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
69498433 AGGAAGTACT
* **
69498443 AAAAGGGTTTTGCCCCAGTTTACCGAAAAAGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCGAAAAAGGCTAGGCCCCAGTTTATCA
**
69498493 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTTTGCCCCAGTTTACCGAAAA-AGGCTAGGCC-CCAGTT
69498538 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 4 0.11
49 11 0.29
50 23 0.61
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.26
Consensus pattern (50 bp):
AAAAGGGCTTTGCCCCAGTTTACCGAAAAAGGCTAGGCCCCAGTTTATCA
Found at i:69504939 original size:45 final size:45
Alignment explanation
Indices: 69504887--69504977 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
69504877 GAGTTATGCC
*
69504887 ATTGATGAATAATTGAGCTTTGTGAAGTTAGACGATGAATTATGA
1 ATTGATGAATAATTGAGCTTTGTGAAGTTAGACAATGAATTATGA
* *
69504932 ATTGATGAATAATTGAGCTTTGTGGAGTTAGATAATGAATTATGA
1 ATTGATGAATAATTGAGCTTTGTGAAGTTAGACAATGAATTATGA
69504977 A
1 A
69504978 AGGTATGTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.36, C:0.03, G:0.24, T:0.36
Consensus pattern (45 bp):
ATTGATGAATAATTGAGCTTTGTGAAGTTAGACAATGAATTATGA
Found at i:69505711 original size:56 final size:56
Alignment explanation
Indices: 69505617--69505729 Score: 190
Period size: 56 Copynumber: 2.0 Consensus size: 56
69505607 CCATGGCATC
*
69505617 GATATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCT
1 GATAAATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCT
** *
69505673 GATAAATGTGTGCGAGTAAGACCATGTTTAATATGTTGGCATCGATATGTGATTCT
1 GATAAATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCT
69505729 G
1 G
69505730 GTATAGGTGA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.28, C:0.12, G:0.25, T:0.35
Consensus pattern (56 bp):
GATAAATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCT
Found at i:69508062 original size:16 final size:16
Alignment explanation
Indices: 69508041--69508073 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
69508031 AACCGAATTC
69508041 TCTGCTCATCTCTTCT
1 TCTGCTCATCTCTTCT
*
69508057 TCTGCTCATCTTTTCT
1 TCTGCTCATCTCTTCT
69508073 T
1 T
69508074 TTTCTTTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.33, G:0.06, T:0.55
Consensus pattern (16 bp):
TCTGCTCATCTCTTCT
Found at i:69512556 original size:23 final size:23
Alignment explanation
Indices: 69512519--69512576 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 23
69512509 AACACTGCAT
* *
69512519 ATATGCACTGCAGTGCCAAAATG
1 ATATGCACCGAAGTGCCAAAATG
* *
69512542 ATATGCACCGAAGTGCTAGAATG
1 ATATGCACCGAAGTGCCAAAATG
69512565 A-ATTGCACCGAA
1 ATA-TGCACCGAA
69512577 ATTGTAACAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 1 0.03
23 29 0.97
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (23 bp):
ATATGCACCGAAGTGCCAAAATG
Found at i:69514059 original size:40 final size:40
Alignment explanation
Indices: 69513961--69514223 Score: 309
Period size: 40 Copynumber: 6.6 Consensus size: 40
69513951 TCCTCGTTCA
* * * ** *
69513961 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
69514000 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
69514040 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
69514080 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
69514120 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
69514160 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
69514200 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
69514224 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 37 0.19
40 154 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:69526312 original size:53 final size:53
Alignment explanation
Indices: 69526232--69526632 Score: 344
Period size: 53 Copynumber: 7.6 Consensus size: 53
69526222 AACTTACCAT
* * * *
69526232 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTGAT-GAGCTCACCAA
1 TGCCATGCCTTG-CATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
*
69526285 TGCCATGCCTTAGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTT-GCATGGTCTTACATGGTATCC-TTGCCTTATAG-AACTCATCAA
* * * *
69526340 TGCCATGTCTTGACACGGTCTTACATGGTATCATTGCCTTATA-AACTCACCAA
1 TGCCATGCCTTG-CATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
* * *
69526393 TGCCATGCCTTGGCATGGTCTT--ATGGGA-CCTTTACCTTATAATAACTCATCAA
1 TGCCATGCCTT-GCATGGTCTTACATGGTATCC-TTGCCTTAT-AGAACTCATCAA
** * * *
69526446 TGCCATGTATTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTG-CATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
* ** *
69526500 TGCCATGCCTTGGCATGGTCTTACATGATATCCTTATC-T-T---AC-GA--AA
1 TGCCATGCCTT-GCATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
*** * *
69526546 TGCCATGTTCCAAACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAA
1 TGCCATG--CCTTGCATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
*
69526601 TGCCATGCCTTGGCATGGTCTTACATGATATC
1 TGCCATGCCTT-GCATGGTCTTACATGGTATC
69526633 TTTATCTTAC
Statistics
Matches: 282, Mismatches: 40, Indels: 51
0.76 0.11 0.14
Matches are distributed among these distances:
46 9 0.03
47 23 0.08
48 4 0.01
49 3 0.01
50 1 0.00
51 13 0.05
52 7 0.02
53 92 0.33
54 63 0.22
55 64 0.23
56 3 0.01
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.34
Consensus pattern (53 bp):
TGCCATGCCTTGCATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
Found at i:69526470 original size:106 final size:106
Alignment explanation
Indices: 69526232--69526623 Score: 467
Period size: 108 Copynumber: 3.7 Consensus size: 106
69526222 AACTTACCAT
* *
69526232 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTGAT-GAGCTCACCAATGCCATGCCTT
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAATGCCATGCCTT
* *
69526296 AGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
66 GGCATGGTCTT--ATGGGACCTTT-CCTTATAATAACTCATCAA
* *
69526340 TGCCATGTCTTGACACGGTCTTACATGGTATCATTGCCTTATA-AACTCACCAATGCCATGCCTT
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAATGCCATGCCTT
69526404 GGCATGGTCTTATGGGACCTTTACCTTATAATAACTCATCAA
66 GGCATGGTCTTATGGGACCTTT-CCTTATAATAACTCATCAA
* * * * *
69526446 TGCCATGTATTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTT
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAATGCCATGCCTT
*** * * * *
69526511 GGCATGGTCTTACATGA--TATCCTTAT-CTTAC-GA--AA
66 GGCATGGTCTTATGGGACCTTTCCTTATAATAACTCATCAA
*** * * *
69526546 TGCCATGTTCCAAACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATGCCT
1 TGCCATG-TCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAATGCCATGCCT
69526611 TGGCATGGTCTTA
65 TGGCATGGTCTTA
69526624 CATGATATCT
Statistics
Matches: 253, Mismatches: 28, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
100 9 0.04
101 63 0.25
102 1 0.00
103 3 0.01
104 6 0.02
105 2 0.01
106 67 0.26
107 33 0.13
108 69 0.27
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.34
Consensus pattern (106 bp):
TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAATGCCATGCCTT
GGCATGGTCTTATGGGACCTTTCCTTATAATAACTCATCAA
Found at i:69526568 original size:47 final size:47
Alignment explanation
Indices: 69526513--69526688 Score: 167
Period size: 47 Copynumber: 3.6 Consensus size: 47
69526503 CATGCCTTGG
*
69526513 CATGGTCTTACATGATATCCTTATCTTACGAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
* * * ***
69526560 CATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATG--CCTTGG
1 CATGGTCTTACATGATATCCTTATC-T-T---AC-CA--AATGCCATGTTCC-AAA
*
69526614 CATGGTCTTACATGATATCTTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
* *
69526661 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGATATCCTTATCTTA
69526689 GTGCTAATGC
Statistics
Matches: 102, Mismatches: 16, Indels: 22
0.73 0.11 0.16
Matches are distributed among these distances:
46 9 0.09
47 48 0.47
48 4 0.04
49 3 0.03
52 3 0.03
53 4 0.04
54 22 0.22
55 9 0.09
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:69526588 original size:101 final size:101
Alignment explanation
Indices: 69526244--69526688 Score: 432
Period size: 101 Copynumber: 4.3 Consensus size: 101
69526234 CCATGTCTTG
* * * * * *
69526244 ACATGGTCTTACATGGTATCCTTGCCTGAT-GAGCTCACCAATGCCATGCCTTAGCATGGTCTTA
1 ACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
* * * ***
69526308 CATGGGACCTTTGCCTTATAGTAACTCATCAATGCCATG-TCTTG
66 CAT--GA--TAT-CCTTAT-CTTAC-CA--AATGCCATGTTCCAA
* * * * *
69526352 ACACGGTCTTACATGGTATCATTGCCTTATA-AACTCACCAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
*** * * * **
69526416 TGGGACCTTTACCTTATAATAACTCATCAATGCCATGTAT--TG
66 CATGA--TAT-CCTTAT-CTTAC-CA--AATGCCATGT-TCCAA
* * *
69526458 ACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
*
69526523 CATGATATCCTTATCTTACGAAATGCCATGTTCCAA
66 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
69526559 ACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
*
69526624 CATGATATCTTTATCTTACCAAATGCCATGTTCCAA
66 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
69526660 ACATGGTCTTACATGGTATCCTTGTCTTA
1 ACATGGTCTTACATGGTATCCTTGTCTTA
69526689 GTGCTAATGC
Statistics
Matches: 301, Mismatches: 30, Indels: 19
0.86 0.09 0.05
Matches are distributed among these distances:
99 1 0.00
100 10 0.03
101 125 0.42
102 1 0.00
103 3 0.01
104 6 0.02
105 2 0.01
106 61 0.20
107 33 0.11
108 59 0.20
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (101 bp):
ACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
Found at i:69532748 original size:6 final size:6
Alignment explanation
Indices: 69532722--69532767 Score: 56
Period size: 6 Copynumber: 7.3 Consensus size: 6
69532712 TTAAAAAGAT
* *
69532722 AAATAA AGATAA AAGTAA AAATAA AAATAA TAAATAA TAAATAA AA
1 AAATAA AAATAA AAATAA AAATAA AAATAA -AAATAA -AAATAA AA
69532768 GTCTTCAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
6 22 0.63
7 13 0.37
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (6 bp):
AAATAA
Found at i:69540225 original size:13 final size:13
Alignment explanation
Indices: 69540201--69540240 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
69540191 CGTGTTGGTA
*
69540201 CGCACAGTCGTGT
1 CGCACAGCCGTGT
*
69540214 CGCATAGCCGTGT
1 CGCACAGCCGTGT
69540227 CGCACAGCCGTGT
1 CGCACAGCCGTGT
69540240 C
1 C
69540241 CTACTTTGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.15, C:0.35, G:0.30, T:0.20
Consensus pattern (13 bp):
CGCACAGCCGTGT
Found at i:69548167 original size:53 final size:54
Alignment explanation
Indices: 69548096--69548401 Score: 354
Period size: 53 Copynumber: 5.6 Consensus size: 54
69548086 AAATTACCAT
* *
69548096 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
* * * *
69548149 TGTCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCGTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAG-AACTCATCAA
* * *
69548204 TGCCATGTCTTGACATGGTCTTACATGGTATCATTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
* *
69548257 TGCCATGCCTTGGCACGGTCTTACATAGG-A-CCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACAT-GGTATCC-TTGCCTTATAG-AACTCATCAA
** *
69548312 TGCCATGTTCC-AAACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAA
1 TGCCATG--CCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
* * *
69548367 TGCCATGCCTTGGCATGGTCTTAAATGATATCCTT
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
69548402 ATATTACCAA
Statistics
Matches: 212, Mismatches: 28, Indels: 25
0.80 0.11 0.09
Matches are distributed among these distances:
52 3 0.01
53 78 0.37
54 25 0.12
55 77 0.36
56 25 0.12
57 4 0.02
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.34
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
Found at i:69548224 original size:108 final size:108
Alignment explanation
Indices: 69548096--69548389 Score: 480
Period size: 108 Copynumber: 2.7 Consensus size: 108
69548086 AAATTACCAT
*
69548096 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGTCATGCCTTG
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
* *
69548161 GCATGGTCTTACATGGGACCTTTGCGTTATAGTAACTCATCAA
66 GCATGGTCTTACATAGGACCTTTGCCTTATAGTAACTCATCAA
*
69548204 TGCCATGTCTTGACATGGTCTTACATGGTATCATTGCCTTATGAACTCACCAATGCCATGCCTTG
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
*
69548269 GCACGGTCTTACATAGGACCTTTGCCTTATAGTAACTCATCAA
66 GCATGGTCTTACATAGGACCTTTGCCTTATAGTAACTCATCAA
*** * *
69548312 TGCCATGTTCCAAACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAATGCCATGCCT
1 TGCCATG-TCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAATGCCATGCCT
69548377 TGGCATGGTCTTA
64 TGGCATGGTCTTA
69548390 AATGATATCC
Statistics
Matches: 172, Mismatches: 12, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
108 110 0.64
109 31 0.18
110 31 0.18
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (108 bp):
TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
GCATGGTCTTACATAGGACCTTTGCCTTATAGTAACTCATCAA
Found at i:69553236 original size:40 final size:39
Alignment explanation
Indices: 69553144--69553245 Score: 127
Period size: 39 Copynumber: 2.6 Consensus size: 39
69553134 ACAATTCGGA
*
69553144 TATATATGGCACTTAGTGTATGATTCAAGAAAGCTTCAC
1 TATATATGGCACTTAGTGTGTGATTCAAGAAAGCTTCAC
** *
69553183 TATAGT-TGGCACTTAGTGTGTGATT-TGGAATGGCTTCGAC
1 TATA-TATGGCACTTAGTGTGTGATTCAAGAA-AGCTTC-AC
69553223 TATATATGGCACTTAGTGTGTGA
1 TATATATGGCACTTAGTGTGTGA
69553246 GACTGTGATA
Statistics
Matches: 55, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
38 3 0.05
39 28 0.51
40 24 0.44
ACGTcount: A:0.26, C:0.13, G:0.25, T:0.36
Consensus pattern (39 bp):
TATATATGGCACTTAGTGTGTGATTCAAGAAAGCTTCAC
Found at i:69553327 original size:42 final size:42
Alignment explanation
Indices: 69553225--69553331 Score: 128
Period size: 41 Copynumber: 2.5 Consensus size: 42
69553215 GCTTCGACTA
* * * **
69553225 TATATGGCACTTAGTGTGTGAGACTGTGATAGCTTTGGCTATG
1 TATA-GGCACTTAGTGTGCGAGATTATGATAGCTTCAGCTATG
*
69553268 TA-AGGCACTTAGCGTGCGAGATTAT-ATTAGCTTCAGCTATG
1 TATAGGCACTTAGTGTGCGAGATTATGA-TAGCTTCAGCTATG
69553309 TATAGGCACTTAGTGTGCGAGAT
1 TATAGGCACTTAGTGTGCGAGAT
69553332 ATTGAGTATT
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
40 1 0.02
41 32 0.58
42 20 0.36
43 2 0.04
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (42 bp):
TATAGGCACTTAGTGTGCGAGATTATGATAGCTTCAGCTATG
Found at i:69557716 original size:54 final size:54
Alignment explanation
Indices: 69557614--69557716 Score: 129
Period size: 54 Copynumber: 1.9 Consensus size: 54
69557604 CCTGAATCGG
* * *
69557614 GGAAAGAGTTTGTGATTTTTAGAGACACGTCTTTAAATCGTTTGGGATGTGTTT
1 GGAAAGAGTTTGTGATTTTTAGAGACACGTCATTAAATCGTCTAGGATGTGTTT
* *
69557668 GGAAAGAGTTTGTG-TTTTATAGTGACGCGTCATTAAA-CAGTCTAGGATG
1 GGAAAGAGTTTGTGATTTT-TAGAGACACGTCATTAAATC-GTCTAGGATG
69557717 GCCACTGATG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
53 5 0.12
54 37 0.88
ACGTcount: A:0.26, C:0.09, G:0.28, T:0.37
Consensus pattern (54 bp):
GGAAAGAGTTTGTGATTTTTAGAGACACGTCATTAAATCGTCTAGGATGTGTTT
Found at i:69561222 original size:43 final size:42
Alignment explanation
Indices: 69561119--69561236 Score: 139
Period size: 43 Copynumber: 2.8 Consensus size: 42
69561109 TGTGTTATCG
* *
69561119 TGTAAGACCACGTCTGGGACGTTGGCATCGTACTTGATTTCA
1 TGTAAGACCACGTATGGGACGTTGGCATCGTACTTGATTACA
** * *
69561161 TGTAAGACCTTGTATGGGACAG-TGGTATCGGTATTTGATTACA
1 TGTAAGACCACGTATGGGAC-GTTGGCATC-GTACTTGATTACA
* *
69561204 TGTAAGACCACGTTTGGGACGTTGGCATTGTAC
1 TGTAAGACCACGTATGGGACGTTGGCATCGTAC
69561237 GAGCTTTTCA
Statistics
Matches: 61, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
42 27 0.44
43 34 0.56
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACGTATGGGACGTTGGCATCGTACTTGATTACA
Found at i:69570082 original size:40 final size:40
Alignment explanation
Indices: 69570027--69570181 Score: 240
Period size: 40 Copynumber: 3.9 Consensus size: 40
69570017 GAATATAGCT
*
69570027 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* * *
69570067 ACTCGCACAATTGCCTTCGAGACTTGGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
*
69570107 ACTCGCACAAATGCCTTCGGGACTTGGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
69570147 ACTCGCACGAATGCCTTCAGG-CTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
69570182 CAATCCAATA
Statistics
Matches: 106, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 13 0.12
40 93 0.88
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:69578120 original size:40 final size:40
Alignment explanation
Indices: 69578039--69578259 Score: 304
Period size: 40 Copynumber: 5.6 Consensus size: 40
69578029 AAACCAAGTA
** * *
69578039 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
69578078 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
69578118 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGTACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
69578158 CCTTCGGGACTTGGCCAGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
69578198 CCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
69578238 CCTTCGGG-GTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
69578260 CAATCCGAAT
Statistics
Matches: 166, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 25 0.15
40 141 0.85
ACGTcount: A:0.21, C:0.26, G:0.25, T:0.28
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Done.