Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 211 of 322
Found at i:69597862 original size:41 final size:41
Alignment explanation
Indices: 69597727--69597912 Score: 252
Period size: 41 Copynumber: 4.6 Consensus size: 41
69597717 CTCGCACAAG
* * * * * *
69597727 GCCTTCGGGTCTTAACCCGGATATGGTCAC-TAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
69597767 GCCTTCGGGACTTAGCCCGGATATAGTCGC-TAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
* *
69597807 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
69597848 GCCTTTGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
69597889 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
69597913 CATTCGAGTA
Statistics
Matches: 131, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 3 0.02
40 59 0.45
41 66 0.50
42 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (41 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
Found at i:69597862 original size:81 final size:80
Alignment explanation
Indices: 69597691--69597912 Score: 252
Period size: 81 Copynumber: 2.8 Consensus size: 80
69597681 AATCAAGCAT
** * * * * * * *
69597691 CTTCGGGGTTTAG-CCGGATATAGCCACTCGCAC-AAGGCCTTCGGGTCTTAACCCGGATATGGT
1 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAAGCCTTCGGATCTTAGCCCGGATATAGT
* *
69597754 CACTAGCATAAATGC
66 CACTAGCACAAAAGC
* * *
69597769 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGATCTTAGTCCGGATGTAGT
1 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAAGCCTTCGGATCTTAGCCCGGATATAGT
*
69597834 CGCTTAGCACAAAAGC
66 CAC-TAGCACAAAAGC
*
69597850 CTTTGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGCCTTCGGGA-CTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTCGC-TAGCACAAAAGCCTTC-GGATCTTAGCCCGGATAT
69597913 CATTCGAGTA
Statistics
Matches: 121, Mismatches: 18, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
78 11 0.09
79 17 0.14
80 26 0.21
81 37 0.31
82 27 0.22
83 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAAGCCTTCGGATCTTAGCCCGGATATAGT
CACTAGCACAAAAGC
Found at i:69604944 original size:39 final size:40
Alignment explanation
Indices: 69604899--69605107 Score: 127
Period size: 41 Copynumber: 5.2 Consensus size: 40
69604889 CGGGGTTTAG
* * *
69604899 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
69604938 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
69604978 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* * * * * *
69605018 CTGGATGTAGTCGCA-TAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATA-AC-CACTAGCATAAAGGCCTTCGGGACTTAAC
** * * *
69605059 CCGGATATAGTCGCTTAGCATAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
69605100 CCGGATAT
1 CCGGATAT
69605108 CATTTGAGTA
Statistics
Matches: 138, Mismatches: 25, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
39 19 0.14
40 55 0.40
41 60 0.43
42 4 0.03
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:69605049 original size:41 final size:40
Alignment explanation
Indices: 69604922--69605107 Score: 239
Period size: 41 Copynumber: 4.6 Consensus size: 40
69604912 CTCGCACAAG
* * * * * *
69604922 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAA
*
69604962 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAA
* * *
69605002 GCCTTC-GGATCTTAGTCTGGATGTAGTCGCATAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAA
*
69605043 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCATAAAA
1 GCCTTCGGGACTTAGCCCGGATATAGTCGC-TAGCACAAAA
69605084 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
69605108 CATTTGAGTA
Statistics
Matches: 129, Mismatches: 14, Indels: 5
0.87 0.09 0.03
Matches are distributed among these distances:
39 3 0.02
40 58 0.45
41 65 0.50
42 3 0.02
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAA
Found at i:69608092 original size:17 final size:18
Alignment explanation
Indices: 69608070--69608103 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
69608060 TGAAGCATAC
69608070 AGAAAGA-CAGAATCGTG
1 AGAAAGATCAGAATCGTG
69608087 AGAAAGATCAGAATCGT
1 AGAAAGATCAGAATCGT
69608104 TTTAGGAGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.47, C:0.12, G:0.26, T:0.15
Consensus pattern (18 bp):
AGAAAGATCAGAATCGTG
Found at i:69610141 original size:64 final size:65
Alignment explanation
Indices: 69610060--69610231 Score: 174
Period size: 67 Copynumber: 2.6 Consensus size: 65
69610050 AGACATTATG
* *
69610060 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGAT-AT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAAA
* * * * *
69610124 ATGTAGCTAGGTCGCATGCGTGGCT-CCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGGGT-GATACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
69610188 TAAA
62 TAAA
* * *
69610192 ATG--GCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGT
69610232 GTACAGGACA
Statistics
Matches: 87, Mismatches: 14, Indels: 15
0.75 0.12 0.13
Matches are distributed among these distances:
63 9 0.10
64 23 0.26
65 4 0.05
66 17 0.20
67 30 0.34
68 4 0.05
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.23
Consensus pattern (65 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAAA
Found at i:69617013 original size:27 final size:26
Alignment explanation
Indices: 69616967--69617020 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
69616957 TGGAGGAAGC
*
69616967 GTTCTGGTGGCCTCGCCACATATATCT
1 GTTCTGGTGACCTCGCCACA-ATATCT
* *
69616994 GTTCTGGTGACTTCGTCACAATATCT
1 GTTCTGGTGACCTCGCCACAATATCT
69617020 G
1 G
69617021 GCAGCCTCGC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 7 0.29
27 17 0.71
ACGTcount: A:0.17, C:0.26, G:0.22, T:0.35
Consensus pattern (26 bp):
GTTCTGGTGACCTCGCCACAATATCT
Found at i:69617109 original size:27 final size:26
Alignment explanation
Indices: 69617035--69617115 Score: 81
Period size: 27 Copynumber: 2.9 Consensus size: 26
69617025 CCTCGCTGCA
*
69617035 ATCTGGTTGCTTCGCCACATATATATAT
1 ATCTGG-TGCTTCGCCACA-ATATCTAT
* *
69617063 ATTCTGGTGGCCTAGCCACAATATCTAT
1 A-TCTGGT-GCTTCGCCACAATATCTAT
*
69617091 ATCTGGTGACTTCGTCACAATATCT
1 ATCTGGTG-CTTCGCCACAATATCT
69617116 GCCAGCGTCG
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
26 1 0.02
27 19 0.43
28 10 0.23
29 14 0.32
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (26 bp):
ATCTGGTGCTTCGCCACAATATCTAT
Found at i:69618600 original size:38 final size:37
Alignment explanation
Indices: 69618558--69618641 Score: 114
Period size: 38 Copynumber: 2.2 Consensus size: 37
69618548 TAGGCACTAG
* *
69618558 GCCTGCGAGATTTATCCCTGATATAATACCAGCACGAA
1 GCCTGCG-GATTTAACCCGGATATAATACCAGCACGAA
**
69618596 GCCTGCTGGATTTAACCCGGATATTTTACCAGCACGAA
1 GCCTGC-GGATTTAACCCGGATATAATACCAGCACGAA
69618634 GCCTGCGG
1 GCCTGCGG
69618642 GTTTTTAAGC
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
37 2 0.05
38 38 0.93
39 1 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (37 bp):
GCCTGCGGATTTAACCCGGATATAATACCAGCACGAA
Found at i:69620598 original size:28 final size:28
Alignment explanation
Indices: 69620500--69620601 Score: 168
Period size: 28 Copynumber: 3.6 Consensus size: 28
69620490 ATAGTAAGTC
*
69620500 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
69620528 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
69620557 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
69620585 TGCACACTTAGTGCTAT
1 CGCACACTTAGTGCTAT
69620602 GCAATTTAAA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 42 0.61
29 27 0.39
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:69620621 original size:57 final size:57
Alignment explanation
Indices: 69620503--69620627 Score: 162
Period size: 57 Copynumber: 2.2 Consensus size: 57
69620493 GTAAGTCCGC
* * *
69620503 ACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACTCGC
1 ACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACCCGA
* * * *
69620560 ACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCA-ATTTAAACCCGA
1 ACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAACCCGA
*
69620617 ACACTTTGTGC
1 ACACTTAGTGC
69620628 CAATCTCATG
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
57 56 0.95
58 3 0.05
ACGTcount: A:0.34, C:0.24, G:0.12, T:0.30
Consensus pattern (57 bp):
ACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACCCGA
Found at i:69621674 original size:289 final size:289
Alignment explanation
Indices: 69621326--69621901 Score: 1125
Period size: 289 Copynumber: 2.0 Consensus size: 289
69621316 TTTGTTACCT
*
69621326 AACTAACAATTCAACAATTTCAACCTCATTACAACCTCTACCTATTCAATATAACATGAACACAA
1 AACTAACAATTCAACAATTTCAACCTCATTACAACCTCTACCTATTCAATAAAACATGAACACAA
69621391 TCCTCCACCCCTAAAGTAGATTCGGCAATCACTTAACCCTTTTTAACCTCAACTTTCAAGTTAAA
66 TCCTCCACCCCTAAAGTAGATTCGGCAATCACTTAACCCTTTTTAACCTCAACTTTCAAGTTAAA
69621456 AGAAATTAACCACTCACCATCTCCTACATTACTATCCATTTTAATGACATTAACACATCTACTAA
131 AGAAATTAACCACTCACCATCTCCTACATTACTATCCATTTTAATGACATTAACACATCTACTAA
69621521 AAGTTTCAAACTTCTTGGCCGAATTTCAACCCCAAAATCCTAAGTCTAATCTATAGGATGAGTAG
196 AAGTTTCAAACTTCTTGGCCGAATTTCAACCCCAAAATCCTAAGTCTAATCTATAGGATGAGTAG
69621586 AATTGGAACTAACCATCTCAAACATGCAC
261 AATTGGAACTAACCATCTCAAACATGCAC
*
69621615 AACTAACAATTCAACAATTTCAACTTCATTACAACCTCTACCTATTCAATAAAACATGAACACAA
1 AACTAACAATTCAACAATTTCAACCTCATTACAACCTCTACCTATTCAATAAAACATGAACACAA
69621680 TCCTCCACCCCTAAAGTAGATTCGGCAATCACTTAACCCTTTTTAACCTCAACTTTCAAGTTAAA
66 TCCTCCACCCCTAAAGTAGATTCGGCAATCACTTAACCCTTTTTAACCTCAACTTTCAAGTTAAA
69621745 AGAAATTAACCACTCACCATCTCCTACATTACTATCCATTTTAATGACATTAACACATCTACTAA
131 AGAAATTAACCACTCACCATCTCCTACATTACTATCCATTTTAATGACATTAACACATCTACTAA
*
69621810 AAGTTTCAAACTTCTTGGCTGAATTTCAACCCCAAAATCCTAAGTCTAATCTATAGGATGAGTAG
196 AAGTTTCAAACTTCTTGGCCGAATTTCAACCCCAAAATCCTAAGTCTAATCTATAGGATGAGTAG
69621875 AATTGGAACTAACCATCTCAAACATGC
261 AATTGGAACTAACCATCTCAAACATGC
69621902 GTAGATTTTC
Statistics
Matches: 284, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
289 284 1.00
ACGTcount: A:0.38, C:0.27, G:0.07, T:0.29
Consensus pattern (289 bp):
AACTAACAATTCAACAATTTCAACCTCATTACAACCTCTACCTATTCAATAAAACATGAACACAA
TCCTCCACCCCTAAAGTAGATTCGGCAATCACTTAACCCTTTTTAACCTCAACTTTCAAGTTAAA
AGAAATTAACCACTCACCATCTCCTACATTACTATCCATTTTAATGACATTAACACATCTACTAA
AAGTTTCAAACTTCTTGGCCGAATTTCAACCCCAAAATCCTAAGTCTAATCTATAGGATGAGTAG
AATTGGAACTAACCATCTCAAACATGCAC
Found at i:69622074 original size:18 final size:20
Alignment explanation
Indices: 69622038--69622077 Score: 57
Period size: 18 Copynumber: 2.0 Consensus size: 20
69622028 CCCTCTTCCC
69622038 TCCTTATTTTATTCACCTTTT
1 TCCTTATTTTATT-ACCTTTT
69622059 TCCTT-TTTTATT-CCTTTT
1 TCCTTATTTTATTACCTTTT
69622077 T
1 T
69622078 ATTTTAATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.37
20 7 0.37
21 5 0.26
ACGTcount: A:0.10, C:0.23, G:0.00, T:0.68
Consensus pattern (20 bp):
TCCTTATTTTATTACCTTTT
Found at i:69628876 original size:28 final size:28
Alignment explanation
Indices: 69628844--69628942 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
69628834 ATAGTAAGTC
*
69628844 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
69628872 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
69628900 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
69628929 CGCACACTTAGTGC
1 CGCACACTTAGTGC
69628943 CAATCTCATG
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
28 45 0.71
29 18 0.29
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:69640029 original size:29 final size:29
Alignment explanation
Indices: 69639990--69640068 Score: 131
Period size: 29 Copynumber: 2.7 Consensus size: 29
69639980 GCATGAATAT
69639990 AATGTGATTTGGGCCTAATGGGAAACATA
1 AATGTGATTTGGGCCTAATGGGAAACATA
* * *
69640019 AATGTGATTTGGGCCTAAAGGGAGATATA
1 AATGTGATTTGGGCCTAATGGGAAACATA
69640048 AATGTGATTTGGGCCTAATGG
1 AATGTGATTTGGGCCTAATGG
69640069 TCTATGTGAA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGGAAACATA
Found at i:69644147 original size:55 final size:53
Alignment explanation
Indices: 69644060--69644269 Score: 217
Period size: 55 Copynumber: 3.9 Consensus size: 53
69644050 ATTAGGGTTT
* * *
69644060 AAGGATACCATGGAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCTAAGGC
* * * *
69644115 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT--TCTAAGGC
* * * *
69644170 AAAGG-TCTCATGTAAGACCATGCCAAGGCATGGCTTTGGTGAG-TTCATAAGGC
1 -AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-TAAGGC
* * * *
69644223 AAAGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTC
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC
69644270 AAAAGGATAC
Statistics
Matches: 126, Mismatches: 23, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
52 4 0.03
53 40 0.32
54 11 0.09
55 67 0.53
56 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (53 bp):
AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
Found at i:69644266 original size:108 final size:110
Alignment explanation
Indices: 69644068--69644267 Score: 298
Period size: 108 Copynumber: 1.8 Consensus size: 110
69644058 TTAAGGATAC
* *
69644068 CATGGAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGAC
1 CATGGAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAAGAAACCATGTAAGAC
*
69644133 CATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCT
66 CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCT
* * * *
69644178 CATGTAAGACCATGCCAAGGCATGGC-TTTGGTGA-G-TTCATAAGGCAAAGATACCATGTAAGA
1 CATGGAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAAGAAACCATGTAAGA
*
69644240 CCATGTCAAGACATGGCAATGGTAAGTT
65 CCATGTCAAGACATGGCAATGATAAGTT
69644268 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.58
109 6 0.07
110 25 0.31
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (110 bp):
CATGGAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAAGAAACCATGTAAGAC
CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCT
Found at i:69644743 original size:7 final size:7
Alignment explanation
Indices: 69644731--69644763 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
69644721 CCTAGATGAA
69644731 TTGGGCT
1 TTGGGCT
69644738 TTGGGCT
1 TTGGGCT
69644745 TTGGGCT
1 TTGGGCT
69644752 TTGGGCT
1 TTGGGCT
69644759 TTGGG
1 TTGGG
69644764 TCTCAGAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.00, C:0.12, G:0.45, T:0.42
Consensus pattern (7 bp):
TTGGGCT
Found at i:69645999 original size:8 final size:8
Alignment explanation
Indices: 69645982--69646024 Score: 52
Period size: 8 Copynumber: 5.4 Consensus size: 8
69645972 GTAGATCATC
69645982 AAAAGCCG
1 AAAAGCCG
*
69645990 AAATGCCG
1 AAAAGCCG
69645998 AAAAGCC-
1 AAAAGCCG
*
69646005 AAAATGCTG
1 AAAA-GCCG
69646014 AAAAGCCG
1 AAAAGCCG
69646022 AAA
1 AAA
69646025 GTTTGGCTAC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
7 4 0.14
8 21 0.72
9 4 0.14
ACGTcount: A:0.51, C:0.21, G:0.21, T:0.07
Consensus pattern (8 bp):
AAAAGCCG
Found at i:69646003 original size:16 final size:16
Alignment explanation
Indices: 69645982--69646024 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
69645972 GTAGATCATC
69645982 AAAAGCCGAAATGCCG
1 AAAAGCCGAAATGCCG
* *
69645998 AAAAGCCAAAATGCTG
1 AAAAGCCGAAATGCCG
69646014 AAAAGCCGAAA
1 AAAAGCCGAAA
69646025 GTTTGGCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.51, C:0.21, G:0.21, T:0.07
Consensus pattern (16 bp):
AAAAGCCGAAATGCCG
Found at i:69646323 original size:29 final size:29
Alignment explanation
Indices: 69646236--69646354 Score: 143
Period size: 29 Copynumber: 4.2 Consensus size: 29
69646226 GTGAGCATGA
69646236 ATAT-AATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* ** *
69646264 ACATAAATGTGATTTGGGCCTAAAAGCCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
69646293 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * * * *
69646322 ATGTGAATAT-AGTTGGGTCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
69646350 ATATA
1 ATATA
69646355 CAGGTATGTG
Statistics
Matches: 75, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
28 22 0.29
29 53 0.71
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.30
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:69650450 original size:29 final size:29
Alignment explanation
Indices: 69650375--69650452 Score: 140
Period size: 28 Copynumber: 2.7 Consensus size: 29
69650365 CATCTCATTT
69650375 ATATGGCCCATCAGGCCCAATTCACGTTC
1 ATATGGCCCATCAGGCCCAATTCACGTTC
69650404 ATAT-GCCCATCAGGCCCAATTCACGTTC
1 ATATGGCCCATCAGGCCCAATTCACGTTC
*
69650432 ATATGGCCCATTAGGCCCAAT
1 ATATGGCCCATCAGGCCCAAT
69650453 CTAATTTATA
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
28 28 0.60
29 19 0.40
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (29 bp):
ATATGGCCCATCAGGCCCAATTCACGTTC
Found at i:69657368 original size:17 final size:18
Alignment explanation
Indices: 69657346--69657379 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
69657336 CACATTGAAG
69657346 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
69657363 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
69657380 CTTCCTTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:69658752 original size:16 final size:16
Alignment explanation
Indices: 69658731--69658773 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
69658721 ATAGCCAAAT
**
69658731 TTTCGACTTTTTGGCA
1 TTTCGACTTTTCAGCA
69658747 TTTCGACTTTTCAGCA
1 TTTCGACTTTTCAGCA
*
69658763 TTTCGGCTTTT
1 TTTCGACTTTT
69658774 ACCGATCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.12, C:0.21, G:0.16, T:0.51
Consensus pattern (16 bp):
TTTCGACTTTTCAGCA
Found at i:69662490 original size:27 final size:27
Alignment explanation
Indices: 69662446--69662727 Score: 135
Period size: 27 Copynumber: 10.6 Consensus size: 27
69662436 CCTTAGTGGA
*** *
69662446 TAAAATGACTGAAATGCCCCTAAATGG
1 TAAAATGACTGTTTTGCCCCTATATGG
* * * *
69662473 TAAATTGACTGTTTTGCCCTTATGTGC
1 TAAAATGACTGTTTTGCCCCTATATGG
* * * * *
69662500 TAAAATAACCGTTTTGCTCTTGT-TGG
1 TAAAATGACTGTTTTGCCCCTATATGG
*** *
69662526 TAAAATGACTGAAATGCCCCTACATGG
1 TAAAATGACTGTTTTGCCCCTATATGG
* * * *
69662553 TAAATTGACTATTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCCTATATGG
* * *
69662580 TAAATTTATTGTTTTG-CCCTAGT-TGG
1 TAAAATGACTGTTTTGCCCCTA-TATGG
* *** * *
69662606 TAAAATGACCGAAATGGCCCTACATGG
1 TAAAATGACTGTTTTGCCCCTATATGG
* * *
69662633 -AAAATTGACTATTTTGCCCTTATGTGG
1 TAAAA-TGACTGTTTTGCCCCTATATGG
*
69662660 TAAAATGACTGTTTT-ACCCTAGT-TGG
1 TAAAATGACTGTTTTGCCCCTA-TATGG
* ***
69662686 TAAAATAACTGAAATGCCCCTATATGG
1 TAAAATGACTGTTTTGCCCCTATATGG
* *
69662713 TAAATTGATTGTTTT
1 TAAAATGACTGTTTT
69662728 TCCCTTATGT
Statistics
Matches: 180, Mismatches: 66, Indels: 18
0.68 0.25 0.07
Matches are distributed among these distances:
26 55 0.31
27 121 0.67
28 4 0.02
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.36
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCCTATATGG
Found at i:69662594 original size:80 final size:80
Alignment explanation
Indices: 69662446--69662738 Score: 415
Period size: 80 Copynumber: 3.7 Consensus size: 80
69662436 CCTTAGTGGA
* * * *
69662446 TAAAATGACTGAAATGCCCCTAAATGGTAAATTGACTGTTTTGCCCTTATGTGCTAAAATAACCG
1 TAAAATGACTGAAATGCCCCTACATGGTAAATTGACTATTTTGCCCTTATGTGGTAAAATAACTG
* *
69662511 TTTTGCTCTTGTTGG
66 TTTTGCCCTAGTTGG
* * *
69662526 TAAAATGACTGAAATGCCCCTACATGGTAAATTGACTATTTTGCCCTTATGTGGTAAATTTATTG
1 TAAAATGACTGAAATGCCCCTACATGGTAAATTGACTATTTTGCCCTTATGTGGTAAAATAACTG
69662591 TTTTGCCCTAGTTGG
66 TTTTGCCCTAGTTGG
* * * *
69662606 TAAAATGACCGAAATGGCCCTACATGGAAAATTGACTATTTTGCCCTTATGTGGTAAAATGACTG
1 TAAAATGACTGAAATGCCCCTACATGGTAAATTGACTATTTTGCCCTTATGTGGTAAAATAACTG
*
69662671 TTTTACCCTAGTTGG
66 TTTTGCCCTAGTTGG
* * * * *
69662686 TAAAATAACTGAAATGCCCCTATATGGTAAATTGATTGTTTTTCCCTTATGTG
1 TAAAATGACTGAAATGCCCCTACATGGTAAATTGACTATTTTGCCCTTATGTG
69662739 ATATATATTG
Statistics
Matches: 189, Mismatches: 24, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
80 189 1.00
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (80 bp):
TAAAATGACTGAAATGCCCCTACATGGTAAATTGACTATTTTGCCCTTATGTGGTAAAATAACTG
TTTTGCCCTAGTTGG
Found at i:69663084 original size:18 final size:18
Alignment explanation
Indices: 69663061--69663135 Score: 71
Period size: 18 Copynumber: 4.2 Consensus size: 18
69663051 GGACTTGCAT
*
69663061 ACTGTTTGCTGATACTGC
1 ACTGTTTACTGATACTGC
* **
69663079 ACTGTTTACTAATGTTGC
1 ACTGTTTACTGATACTGC
* *
69663097 ATTGTTTACTGATATTGC
1 ACTGTTTACTGATACTGC
* *
69663115 ACTATTTACTGTTACTG-
1 ACTGTTTACTGATACTGC
69663132 ACTG
1 ACTG
69663136 AAATAGGCTA
Statistics
Matches: 45, Mismatches: 12, Indels: 1
0.78 0.21 0.02
Matches are distributed among these distances:
17 3 0.07
18 42 0.93
ACGTcount: A:0.21, C:0.17, G:0.17, T:0.44
Consensus pattern (18 bp):
ACTGTTTACTGATACTGC
Found at i:69672471 original size:56 final size:56
Alignment explanation
Indices: 69672399--69672551 Score: 204
Period size: 56 Copynumber: 2.7 Consensus size: 56
69672389 ATCTGATGTT
*
69672399 GAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT-TCGATATATGTGTGC
1 GAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTCT-GATATATGTGTGC
* *
69672455 GAGTAAGACCACGTTTAGTACATTGGCATCGATATGTGATTCTGATTTATGTGTGC
1 GAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTCTGATATATGTGTGC
* * *
69672511 GAGTAAGACC-C-TATCTGAGACAGTGGCATCGATATGTGATT
1 GAGTAAGACCACGT-T-TAATACATTGGCATCGATATGTGATT
69672552 ACATGTAAGA
Statistics
Matches: 87, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
54 1 0.01
55 2 0.02
56 83 0.95
57 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (56 bp):
GAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTCTGATATATGTGTGC
Found at i:69675685 original size:54 final size:54
Alignment explanation
Indices: 69675627--69675822 Score: 239
Period size: 54 Copynumber: 3.6 Consensus size: 54
69675617 CAATTTGTAA
* *
69675627 AATTACCAAAGTACCCTCGATTTACAGAATTACCGTTTTACCCTTGATTTACAG
1 AATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAG
*** * * *
69675681 AATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAG
1 AATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAG
** * *
69675735 AATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAA
1 AATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAG
* * * * *
69675789 AATTACTAAAATACCCTTGGTTTACAAAATTACC
1 AATTACCAAATTACCCTCGATTTACAGAATTACC
69675823 AAAATACCTC
Statistics
Matches: 120, Mismatches: 22, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 120 1.00
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.36
Consensus pattern (54 bp):
AATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAG
Found at i:69675795 original size:27 final size:27
Alignment explanation
Indices: 69675638--69675794 Score: 251
Period size: 27 Copynumber: 5.8 Consensus size: 27
69675628 ATTACCAAAG
69675638 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
69675665 TACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
69675692 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
69675719 TACCCTCAATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
69675746 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
69675773 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
69675795 TAAAATACCC
Statistics
Matches: 120, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 120 1.00
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:69675803 original size:27 final size:27
Alignment explanation
Indices: 69675593--69675996 Score: 188
Period size: 27 Copynumber: 14.9 Consensus size: 27
69675583 AATACTTTAG
* * ** *
69675593 TTTACCAAATTACTAAAATGTCCTCAA
1 TTTACAAAATTACCAAAATACCCTCGA
** *
69675620 TTTGTAAAATTACCAAAGTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* **** *
69675647 TTTACAGAATTACCGTTTTACCCTTGA
1 TTTACAAAATTACCAAAATACCCTCGA
* ****
69675674 TTTACAGAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * *** *
69675701 TTTATAGAATTACCATTTTACCCTCAA
1 TTTACAAAATTACCAAAATACCCTCGA
* ***
69675728 TTTACAGAATTACCATTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* *****
69675755 TTTACAGAATTACTGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * *
69675782 TTTACAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTCGA
*
69675809 TTTACAAAATTACCAAAATA-CCTCTA
1 TTTACAAAATTACCAAAATACCCTCGA
** *
69675835 GTTTGTAAAATTACCAAAATACCACTTG-
1 -TTTACAAAATTACCAAAATACC-CTCGA
*** * *
69675863 TTTGTGAAATTATCAAAATACCCTCAA
1 TTTACAAAATTACCAAAATACCCTCGA
**
69675890 TTTGTAAAATTACCAAAATACCC-CTGA
1 TTTACAAAATTACCAAAATACCCTC-GA
* *
69675917 TTTACAAAATTA-TAGAAATACCCTTGA
1 TTTACAAAATTACCA-AAATACCCTCGA
* * * * *
69675944 CTTTCAAAAAATTA-TAGAAATACCATTGG
1 -TTT-ACAAAATTACCA-AAATACCCTCGA
**
69675973 TTTACAAAATTACTGAAATACCCT
1 TTTACAAAATTACCAAAATACCCT
69675997 TGGTTTTTAG
Statistics
Matches: 311, Mismatches: 56, Indels: 20
0.80 0.14 0.05
Matches are distributed among these distances:
26 7 0.02
27 273 0.88
28 8 0.03
29 23 0.07
ACGTcount: A:0.37, C:0.21, G:0.08, T:0.34
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCTCGA
Found at i:69675804 original size:81 final size:81
Alignment explanation
Indices: 69675625--69675823 Score: 272
Period size: 81 Copynumber: 2.5 Consensus size: 81
69675615 CTCAATTTGT
* * *
69675625 AAAATTACCAAAGTACCCTCGATTTACAGAATTACCGTTTTACCCTTGATTTACAGAATTACCGT
1 AAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGT
*
69675690 TTTACCCTCGATTTAT
66 TTTACCCTCGATTTAC
* *** * *
69675706 AGAATTACCATTTTACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACTGT
1 AAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGT
69675771 TTTACCCTCGATTTAC
66 TTTACCCTCGATTTAC
* * * *
69675787 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCA
1 AAAATTACCAAAATACCCTCGATTTACAGAATTACCA
69675824 AAATACCTCT
Statistics
Matches: 100, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 100 1.00
ACGTcount: A:0.33, C:0.23, G:0.08, T:0.36
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGT
TTTACCCTCGATTTAC
Found at i:69676005 original size:29 final size:28
Alignment explanation
Indices: 69675917--69676003 Score: 106
Period size: 29 Copynumber: 3.1 Consensus size: 28
69675907 ATACCCCTGA
*
69675917 TTTACAAAATTATAGAAATACCCTTGACT
1 TTTACAAAATTATAGAAATACCCTTG-GT
* * *
69675946 TTCAAAAAATTATAGAAATACCATTGG-
1 TTTACAAAATTATAGAAATACCCTTGGT
69675973 TTTACAAAATTACT-GAAATACCCTTGGT
1 TTTACAAAATTA-TAGAAATACCCTTGGT
69676001 TTT
1 TTT
69676004 TAGATTTACC
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
27 22 0.45
28 4 0.08
29 23 0.47
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.36
Consensus pattern (28 bp):
TTTACAAAATTATAGAAATACCCTTGGT
Found at i:69676085 original size:27 final size:27
Alignment explanation
Indices: 69676055--69676116 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
69676045 TACCCCTAAT
69676055 GGGTAAAAAGACCGTAA-AGCCCTTGTA
1 GGGTAAAAAGACCGTAATA-CCCTTGTA
**
69676082 GGGTAAAGTGACCGTAATACCCTTGTA
1 GGGTAAAAAGACCGTAATACCCTTGTA
*
69676109 TGGTAAAA
1 GGGTAAAA
69676117 TGATGAATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 29 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.16, G:0.26, T:0.23
Consensus pattern (27 bp):
GGGTAAAAAGACCGTAATACCCTTGTA
Found at i:69676965 original size:25 final size:25
Alignment explanation
Indices: 69676920--69677003 Score: 109
Period size: 25 Copynumber: 3.4 Consensus size: 25
69676910 GAGGAAGTGC
69676920 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTT-TGCCCCAGTTTATTG
* **
69676946 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATTG
69676971 AAAAGGGCTTTGCCCCAG-TTATT-
1 AAAAGGGCTTTGCCCCAGTTTATTG
69676994 AAAAGAGGCT
1 AAAAG-GGCT
69677004 AGGCCTCCAG
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
23 5 0.10
24 7 0.14
25 29 0.57
26 10 0.20
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATTG
Found at i:69677195 original size:42 final size:42
Alignment explanation
Indices: 69677136--69677227 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
69677126 TAGTCTCCCC
* ** *
69677136 AAATGGGCTTGCATACATTCATTGGTATTTCATATAATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATAATATTG
* *
69677178 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATAATATTG
69677220 AAATGGGC
1 AAATGGGC
69677228 CTATAGGCCA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATAATATTG
Found at i:69686941 original size:34 final size:33
Alignment explanation
Indices: 69686888--69686958 Score: 88
Period size: 34 Copynumber: 2.1 Consensus size: 33
69686878 TCAGTTGCAA
*
69686888 TATCAGTGTGGGCCTTAGCCAAATACAGTAATAG
1 TATCAGTGTGGGCCATAGCCAAATACAGT-ATAG
* * * *
69686922 TATCAGTGTGGGTCATAGCCCATTTCAGTATAG
1 TATCAGTGTGGGCCATAGCCAAATACAGTATAG
69686955 TATC
1 TATC
69686959 CAAAATGCAT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
33 8 0.25
34 24 0.75
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (33 bp):
TATCAGTGTGGGCCATAGCCAAATACAGTATAG
Found at i:69693521 original size:122 final size:122
Alignment explanation
Indices: 69693345--69693588 Score: 454
Period size: 122 Copynumber: 2.0 Consensus size: 122
69693335 GTAACACCCT
69693345 GAATTTGGGCTTAGAAGTTTTGGGCCTTGAGCATGTGAGCGGTTGAAGGCAGCTTATAATATTTT
1 GAATTTGGGCTTAGAAGTTTTGGGCCTTGAGCATGTGAGCGGTTGAAGGCAGCTTATAATATTTT
69693410 GTTGTGCACGTAAATTTAGTTAATAAAGG-TTTGTTTTAGTGGTTAAGTGTGCTGAGA
66 GTTGTGCACGTAAATTTAGTTAATAAAGGCTTT-TTTTAGTGGTTAAGTGTGCTGAGA
69693467 GAATTTGGGCTTAGAAGTTTTGGGCCTTGAGCATGTGAGCGGTTGAAGGCAGCTTATAATATTTT
1 GAATTTGGGCTTAGAAGTTTTGGGCCTTGAGCATGTGAGCGGTTGAAGGCAGCTTATAATATTTT
* *
69693532 GTTGTGCACGTAAATTTCGTTAATGAAGGCTTTTTTTAGTGGTTAAGTGTGCTGAGA
66 GTTGTGCACGTAAATTTAGTTAATAAAGGCTTTTTTTAGTGGTTAAGTGTGCTGAGA
69693589 AGTGTTGGAG
Statistics
Matches: 119, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
122 116 0.97
123 3 0.03
ACGTcount: A:0.24, C:0.09, G:0.30, T:0.38
Consensus pattern (122 bp):
GAATTTGGGCTTAGAAGTTTTGGGCCTTGAGCATGTGAGCGGTTGAAGGCAGCTTATAATATTTT
GTTGTGCACGTAAATTTAGTTAATAAAGGCTTTTTTTAGTGGTTAAGTGTGCTGAGA
Found at i:69694371 original size:27 final size:27
Alignment explanation
Indices: 69694340--69694455 Score: 126
Period size: 27 Copynumber: 4.3 Consensus size: 27
69694330 TCGATTTTTA
*
69694340 AATTACCAAAATACCCCGGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
69694367 AATTACCAATATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
69694394 AAATA-CATAAATACCCCTGTAGGGTAG
1 AATTACCA-AAATACCCCTGTAGGGTAG
* * * * * *
69694421 AATTACCGAGATAACCTTGTGGGGTAA
1 AATTACCAAAATACCCCTGTAGGGTAG
69694448 AATTACCA
1 AATTACCA
69694456 TTTTGCCCCT
Statistics
Matches: 73, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
26 2 0.03
27 70 0.96
28 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGTAGGGTAG
Found at i:69694465 original size:54 final size:54
Alignment explanation
Indices: 69694348--69694450 Score: 154
Period size: 54 Copynumber: 1.9 Consensus size: 54
69694338 TAAATTACCA
* * *
69694348 AAATACCCCGGTAGGGTAGAATTACCAATATACCCTTGTAGGGTAGAAATACAT
1 AAATACCCCTGTAGGGTAGAATTACCAAGATAACCTTGTAGGGTAGAAATACAT
* *
69694402 AAATACCCCTGTAGGGTAGAATTACCGAGATAACCTTGTGGGGTA-AAAT
1 AAATACCCCTGTAGGGTAGAATTACCAAGATAACCTTGTAGGGTAGAAAT
69694451 TACCATTTTG
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
53 4 0.09
54 40 0.91
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.24
Consensus pattern (54 bp):
AAATACCCCTGTAGGGTAGAATTACCAAGATAACCTTGTAGGGTAGAAATACAT
Found at i:69694856 original size:20 final size:20
Alignment explanation
Indices: 69694810--69694857 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
69694800 CGAAGGTTGT
* *
69694810 GTGTCGTTATTGTGGGCTTT
1 GTGTCGATATTGTGGGCTTC
*
69694830 GTATCGATATTGTGGGCTTC
1 GTGTCGATATTGTGGGCTTC
69694850 GTGTCGAT
1 GTGTCGAT
69694858 TATAGACCCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.10, C:0.12, G:0.33, T:0.44
Consensus pattern (20 bp):
GTGTCGATATTGTGGGCTTC
Found at i:69695100 original size:19 final size:19
Alignment explanation
Indices: 69695072--69695124 Score: 79
Period size: 19 Copynumber: 2.8 Consensus size: 19
69695062 CATTCACATT
*
69695072 CTGATTCTAATTCTGTTAC
1 CTGATTCTAATTCTGTCAC
*
69695091 CTGATACTAATTCTGTCAC
1 CTGATTCTAATTCTGTCAC
*
69695110 TTGATTCTAATTCTG
1 CTGATTCTAATTCTG
69695125 ATTCTCATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.23, C:0.21, G:0.11, T:0.45
Consensus pattern (19 bp):
CTGATTCTAATTCTGTCAC
Found at i:69695128 original size:12 final size:12
Alignment explanation
Indices: 69695111--69695150 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
69695101 TTCTGTCACT
69695111 TGATTCTAATTC
1 TGATTCTAATTC
* *
69695123 TGATTCTCATTT
1 TGATTCTAATTC
*
69695135 TGATTCTAGTTC
1 TGATTCTAATTC
69695147 TGAT
1 TGAT
69695151 AATGTTTCTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.20, C:0.15, G:0.12, T:0.53
Consensus pattern (12 bp):
TGATTCTAATTC
Found at i:69698291 original size:40 final size:40
Alignment explanation
Indices: 69698217--69698435 Score: 363
Period size: 40 Copynumber: 5.5 Consensus size: 40
69698207 AACCCAAGTA
* *
69698217 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
69698256 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
69698296 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
69698336 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
69698376 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
69698415 CCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGAT
69698436 GTCATCCGAA
Statistics
Matches: 171, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
39 36 0.21
40 134 0.78
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:69706790 original size:40 final size:40
Alignment explanation
Indices: 69706716--69706934 Score: 354
Period size: 40 Copynumber: 5.5 Consensus size: 40
69706706 AACCCAAGTA
* *
69706716 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
69706755 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
69706795 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
69706835 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
69706875 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
69706914 CCTTCAGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGAT
69706935 GTCATCCGAA
Statistics
Matches: 170, Mismatches: 8, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
39 35 0.21
40 134 0.79
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:69726411 original size:13 final size:13
Alignment explanation
Indices: 69726393--69726421 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
69726383 CTCGGTAGGG
69726393 ACACACCTGTGTC
1 ACACACCTGTGTC
69726406 ACACACCTGTGTC
1 ACACACCTGTGTC
69726419 ACA
1 ACA
69726422 TGCCCGTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.38, G:0.14, T:0.21
Consensus pattern (13 bp):
ACACACCTGTGTC
Found at i:69743097 original size:27 final size:26
Alignment explanation
Indices: 69743067--69743118 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
69743057 ATCGGTACAC
* *
69743067 AGTCCTAGGTAAATATGATCGACACAG
1 AGTCATAGATAAATATGAT-GACACAG
*
69743094 AGTCATCGATAAATATGATGACACA
1 AGTCATAGATAAATATGATGACACA
69743119 TAGCCATTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 6 0.27
27 16 0.73
ACGTcount: A:0.40, C:0.17, G:0.19, T:0.23
Consensus pattern (26 bp):
AGTCATAGATAAATATGATGACACAG
Found at i:69743132 original size:26 final size:27
Alignment explanation
Indices: 69743074--69743134 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 27
69743064 CACAGTCCTA
*
69743074 GGTAAATATGATCGACACAGAGTCATC
1 GGTAAATATGATCGACACAGAGCCATC
* * *
69743101 GATAAATATGAT-GACACATAGCCATT
1 GGTAAATATGATCGACACAGAGCCATC
69743127 GGTAAATA
1 GGTAAATA
69743135 CGATTTGCAC
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 18 0.62
27 11 0.38
ACGTcount: A:0.41, C:0.15, G:0.20, T:0.25
Consensus pattern (27 bp):
GGTAAATATGATCGACACAGAGCCATC
Found at i:69743623 original size:27 final size:27
Alignment explanation
Indices: 69743593--69743771 Score: 227
Period size: 27 Copynumber: 6.6 Consensus size: 27
69743583 AGACTCTAAA
69743593 GGTATTTCGATAATTTTACAAACTGAG
1 GGTATTTCGATAATTTTACAAACTGAG
* *
69743620 GGTATTTCGGTAATTTTACGAACTG-G
1 GGTATTTCGATAATTTTACAAACTGAG
* *
69743646 AGGTATTTTGATAATTTTACAAATTGAG
1 -GGTATTTCGATAATTTTACAAACTGAG
*
69743674 GGTATTTCGATAATTTTACAAACTGGG
1 GGTATTTCGATAATTTTACAAACTGAG
* * * *
69743701 GGTATTTCGATAATTTTATAATCCGAC
1 GGTATTTCGATAATTTTACAAACTGAG
69743728 GGTATTTCGATAATTTTACAAACATGA-
1 GGTATTTCGATAATTTTACAAAC-TGAG
* *
69743755 GGTATTTTGGTAATTTT
1 GGTATTTCGATAATTTT
69743772 GAACAGTTTG
Statistics
Matches: 130, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
26 1 0.01
27 126 0.97
28 3 0.02
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
GGTATTTCGATAATTTTACAAACTGAG
Found at i:69747936 original size:15 final size:15
Alignment explanation
Indices: 69747916--69747946 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
69747906 ATTATGAAAG
69747916 ATATGTTTTGGATTA
1 ATATGTTTTGGATTA
*
69747931 ATATGTTTTGTATTA
1 ATATGTTTTGGATTA
69747946 A
1 A
69747947 AATTTTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.16, T:0.55
Consensus pattern (15 bp):
ATATGTTTTGGATTA
Found at i:69748592 original size:56 final size:56
Alignment explanation
Indices: 69748529--69748660 Score: 210
Period size: 56 Copynumber: 2.4 Consensus size: 56
69748519 TATGGCATCA
*
69748529 ATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCAATATGTGATTCTG
1 ATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCAATATGTGATTCCG
* * *
69748585 ATATATGTTTGCGCGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTCCG
1 ATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCAATATGTGATTCCG
* *
69748641 ATTTATGTGTGCAAGTAAGA
1 ATATATGTGTGCGAGTAAGA
69748661 ACCTATTTGG
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 68 1.00
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (56 bp):
ATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCAATATGTGATTCCG
Found at i:69751417 original size:66 final size:66
Alignment explanation
Indices: 69751342--69751473 Score: 246
Period size: 66 Copynumber: 2.0 Consensus size: 66
69751332 ATCTGCCTTT
69751342 AAGGTAGACTTTACCTATTTCATAGTTTCCATGATTCAACTAGCCCTTTTAGCATAAATAGCACA
1 AAGGTAGACTTTACCTATTTCATAGTTTCCATGATTCAACTAGCCCTTTTAGCATAAATAGCACA
69751407 A
66 A
* *
69751408 AAGGTAGACTTTACCTATTTCATGGTTTCCATGATTCAACTAGCCCTTTTTGCATAAATAGCACA
1 AAGGTAGACTTTACCTATTTCATAGTTTCCATGATTCAACTAGCCCTTTTAGCATAAATAGCACA
69751473 A
66 A
69751474 TTTATGAAAG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (66 bp):
AAGGTAGACTTTACCTATTTCATAGTTTCCATGATTCAACTAGCCCTTTTAGCATAAATAGCACA
A
Found at i:69752165 original size:40 final size:40
Alignment explanation
Indices: 69752121--69752211 Score: 123
Period size: 40 Copynumber: 2.3 Consensus size: 40
69752111 GCTCCTCGTT
* *
69752121 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCA-CA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACT-AGCA
*
69752161 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTAGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTAGCA
69752201 CAAATGCCTTC
1 CAAATGCCTTC
69752212 AACTCGCACA
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
39 1 0.02
40 43 0.93
41 2 0.04
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTAGCA
Found at i:69752220 original size:19 final size:19
Alignment explanation
Indices: 69752193--69752230 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
69752183 CGGATTTAGT
69752193 AACTAGCACAAATGCCTTC
1 AACTAGCACAAATGCCTTC
* *
69752212 AACTCGCACAATTGCCTTC
1 AACTAGCACAAATGCCTTC
69752231 GGGACTTAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.34, G:0.11, T:0.24
Consensus pattern (19 bp):
AACTAGCACAAATGCCTTC
Found at i:69752251 original size:59 final size:59
Alignment explanation
Indices: 69752159--69752270 Score: 206
Period size: 59 Copynumber: 1.9 Consensus size: 59
69752149 TAGTAATTCA
69752159 CACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTAGCACAAATGCCTTCAACTCG
1 CACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTAGCACAAATGCCTTCAACTCG
* *
69752218 CACAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTC
1 CACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTAGCACAAATGCCTTC
69752271 GGGCTTAGCC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
59 51 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (59 bp):
CACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTAGCACAAATGCCTTCAACTCG
Found at i:69752297 original size:39 final size:39
Alignment explanation
Indices: 69752214--69752402 Score: 224
Period size: 39 Copynumber: 4.8 Consensus size: 39
69752204 ATGCCTTCAA
* * * *
69752214 CTCGCACAATTGCCTTCGGGACTTAACCCGGATTTAGTAA
1 CTCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAT
69752254 CTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTAT
1 CTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTAT
*
69752293 CTCGCACAAATGCCTTCAGGCTTAGCCCGGAATTAGTAT
1 CTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTAT
* *
69752332 CTCGCACAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-
1 CTCGCACAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-AT
*
69752372 CTTAGCAC-AA-GCCTTCGGGACTTAGCCCGGA
1 C-TCGCACAAATGCCTTCGGG-CTTAGCCCGGA
69752403 CATCATTCAA
Statistics
Matches: 133, Mismatches: 11, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
39 90 0.68
40 34 0.26
41 9 0.07
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.26
Consensus pattern (39 bp):
CTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTAT
Found at i:69762577 original size:40 final size:40
Alignment explanation
Indices: 69762512--69762706 Score: 302
Period size: 40 Copynumber: 4.9 Consensus size: 40
69762502 GTTCAGATTG
*
69762512 ATAATCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
69762551 ATATCCGGGCTAAGTCCTGAAGGCATTTGTGAGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
69762591 ATAACCGGGCCAAGTCCTGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
69762631 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
69762671 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
69762707 AGCTATGTCC
Statistics
Matches: 143, Mismatches: 12, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 12 0.08
40 131 0.92
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:69762732 original size:39 final size:40
Alignment explanation
Indices: 69762512--69762732 Score: 196
Period size: 40 Copynumber: 5.6 Consensus size: 40
69762502 GTTCAGATTG
* * * *
69762512 ATAATCGGGCT-AAGCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAACCCCGAAGGCAATTGAGCGAGTTACT
* ** * * * *
69762551 ATATCCGGGCTAAGTCCTGAAGGCATTTGTGAGAGTTACT
1 ATAACCGGGCTAAACCCCGAAGGCAATTGAGCGAGTTACT
* ** * *
69762591 ATAACCGGGCCAAGTCCTGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAACCCCGAAGGCAATTGAGCGAGTTACT
** *
69762631 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAACCCCGAAGGCAATTGAGCGAGTTACT
** *
69762671 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAACCCCGAAGGCAATTGAGCGAGTTA-CT
**
69762711 ATGTCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAACCCCGAAGG
69762733 TACTTGGTTT
Statistics
Matches: 162, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 25 0.15
40 137 0.85
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAACCCCGAAGGCAATTGAGCGAGTTACT
Found at i:69772976 original size:35 final size:35
Alignment explanation
Indices: 69772864--69772977 Score: 95
Period size: 35 Copynumber: 3.3 Consensus size: 35
69772854 GTATGTACAT
* * * *
69772864 ATGTGATG-ATATGTTGAACTTGTAAATTTGGCTAC
1 ATGTGATGAAT-TATTGAACTTGTATATTTGGCCAA
** * * * * *
69772899 ATGTGATGTTTTATTTAACTTGTATTTTTAGTCAT
1 ATGTGATGAATTATTGAACTTGTATATTTGGCCAA
* *
69772934 ATATGATGAATTATTGAACTTGTATATTCGGCCAA
1 ATGTGATGAATTATTGAACTTGTATATTTGGCCAA
69772969 ATGTGATGA
1 ATGTGATGA
69772978 TATAACAAAC
Statistics
Matches: 59, Mismatches: 19, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
35 58 0.98
36 1 0.02
ACGTcount: A:0.29, C:0.08, G:0.19, T:0.44
Consensus pattern (35 bp):
ATGTGATGAATTATTGAACTTGTATATTTGGCCAA
Found at i:69776462 original size:15 final size:17
Alignment explanation
Indices: 69776432--69776464 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
69776422 TATATACTTC
69776432 TTTCTCTCTCTTTTTTA
1 TTTCTCTCTCTTTTTTA
69776449 TTTCT-TCT-TTTTTTA
1 TTTCTCTCTCTTTTTTA
69776464 T
1 T
69776465 AACAGTAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 3 0.19
17 5 0.31
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTCTCTCTCTTTTTTA
Found at i:69776767 original size:7 final size:7
Alignment explanation
Indices: 69776731--69776765 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
69776721 CTAGCCCTTA
69776731 AAACCCT
1 AAACCCT
*
69776738 AAATCCT
1 AAACCCT
69776745 AAACCCT
1 AAACCCT
69776752 AAACCCT
1 AAACCCT
*
69776759 CAACCCT
1 AAACCCT
69776766 CACTCAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.40, C:0.43, G:0.00, T:0.17
Consensus pattern (7 bp):
AAACCCT
Found at i:69778600 original size:35 final size:34
Alignment explanation
Indices: 69778537--69778627 Score: 132
Period size: 35 Copynumber: 2.7 Consensus size: 34
69778527 AATATTCACC
* *
69778537 AAAATGAAACAAAAATGATAAGGCTTAAAACTAA
1 AAAATGAAACAAAAATTATAAGACTTAAAACTAA
69778571 AAAATGAAACAAAAATTAATAAGACTTAAAACTAA
1 AAAATGAAACAAAAATT-ATAAGACTTAAAACTAA
*
69778606 AAAATG-GA-AAAAATTATAAGAC
1 AAAATGAAACAAAAATTATAAGAC
69778628 CTATAATTAA
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
32 7 0.13
33 7 0.13
34 17 0.32
35 22 0.42
ACGTcount: A:0.64, C:0.08, G:0.10, T:0.19
Consensus pattern (34 bp):
AAAATGAAACAAAAATTATAAGACTTAAAACTAA
Found at i:69778673 original size:40 final size:40
Alignment explanation
Indices: 69778614--69778700 Score: 129
Period size: 40 Copynumber: 2.1 Consensus size: 40
69778604 AAAAAATGGA
* *
69778614 AAAAATTATAAGACCTATAATTAATAATACAAAATATTCAC
1 AAAAA-TATAAAACCTATAATTAACAATACAAAATATTCAC
* *
69778655 AAAAATATAAAACTTATAATTAACAATACAAAATATTTAC
1 AAAAATATAAAACCTATAATTAACAATACAAAATATTCAC
69778695 AAAAAT
1 AAAAAT
69778701 TTAGATGAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
40 37 0.88
41 5 0.12
ACGTcount: A:0.60, C:0.10, G:0.01, T:0.29
Consensus pattern (40 bp):
AAAAATATAAAACCTATAATTAACAATACAAAATATTCAC
Found at i:69784011 original size:15 final size:15
Alignment explanation
Indices: 69783991--69784020 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
69783981 TAGGTACCTG
69783991 TATCACTCACGACAC
1 TATCACTCACGACAC
69784006 TATCACTCACGACAC
1 TATCACTCACGACAC
69784021 GGTTATACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.40, G:0.07, T:0.20
Consensus pattern (15 bp):
TATCACTCACGACAC
Found at i:69784302 original size:46 final size:46
Alignment explanation
Indices: 69784128--69784339 Score: 168
Period size: 46 Copynumber: 4.5 Consensus size: 46
69784118 GCCGATGCCG
* * * *
69784128 TGTCCCAGACACGGTCTTACACTAG-TTTGTATCTCAAGTCGA-AGCCA
1 TGTCCCAGACATGGTCTTACACTAGACTT-CATCTCAAGCCGATA--CA
* **
69784175 TGTCCCAGACATGGTCTTACACT-GACTATCATCTCGTAGCCGACGCA
1 TGTCCCAGACATGGTCTTACACTAGACT-TCATCTC-AAGCCGATACA
* *
69784222 TGTCCTAGACAT-GTCTTACACTAG-CTTACGTCTCAAGGCCGATACA
1 TGTCCCAGACATGGTCTTACACTAGACTT-CATCTCAA-GCCGATACA
* ** *
69784268 TGTCTCAGACAT-GTCTTACACTAGAAC-TCATCTCAATGTTGATGCCA
1 TGTCCCAGACATGGTCTTACACTAG-ACTTCATCTCAA-GCCGAT-ACA
69784315 TGTCCCAGACATGGTCTTACACTAG
1 TGTCCCAGACATGGTCTTACACTAG
69784340 CTCTCACAAA
Statistics
Matches: 135, Mismatches: 19, Indels: 21
0.77 0.11 0.12
Matches are distributed among these distances:
45 2 0.01
46 58 0.43
47 56 0.41
48 19 0.14
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (46 bp):
TGTCCCAGACATGGTCTTACACTAGACTTCATCTCAAGCCGATACA
Found at i:69786704 original size:17 final size:18
Alignment explanation
Indices: 69786682--69786716 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
69786672 TTACATTGAA
69786682 GTGTTTT-AGTGAAAACC
1 GTGTTTTCAGTGAAAACC
*
69786699 GTGTTTTCATTGAAAACC
1 GTGTTTTCAGTGAAAACC
69786717 CTTCTTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (18 bp):
GTGTTTTCAGTGAAAACC
Found at i:69793861 original size:217 final size:217
Alignment explanation
Indices: 69793486--69793919 Score: 859
Period size: 217 Copynumber: 2.0 Consensus size: 217
69793476 TGGCTCGAAG
69793486 TTGGAGACTTAGTGTGCCGCTCAGCAAGAGTTTTTTCAAAACGGTGTGATCCAAGATTTTTTTTT
1 TTGGAGACTTAGTGTGCCGCTCAGCAAGAGTTTTTTCAAAACGGTGTGATCCAAGATTTTTTTTT
69793551 AAGTAGAAAAAAAACCAAATAATAATAAGGCCCACTTCACAACCCGAGTTTTGCAACCTGGGCTT
66 AAGTAGAAAAAAAACCAAATAATAATAAGGCCCACTTCACAACCCGAGTTTTGCAACCTGGGCTT
69793616 TGATACCACTAAATGTAACACCGCAAACTCAGCCCAGACGTTATGGCCGTATCCGGCGTGTTACA
131 TGATACCACTAAATGTAACACCGCAAACTCAGCCCAGACGTTATGGCCGTATCCGGCGTGTTACA
69793681 TTGAAGGGTTTTAGCAAAAACT
196 TTGAAGGGTTTTAGCAAAAACT
69793703 TTGGAGACTTAGTGTGCCGCTCAGCAAGAGTTTTTTCAAAACGGTGTGATCCAAGATTTTTTTTT
1 TTGGAGACTTAGTGTGCCGCTCAGCAAGAGTTTTTTCAAAACGGTGTGATCCAAGATTTTTTTTT
69793768 AAGTAGAAAAAAAACCAAATAATAATAAGGCCCACTTCACAACCCGAGTTTTGCAACCTGGGCTT
66 AAGTAGAAAAAAAACCAAATAATAATAAGGCCCACTTCACAACCCGAGTTTTGCAACCTGGGCTT
69793833 TGATACCACTAAATGTAACACCGCAAACTCAGCCCAGACGTTATGGCCGTATCCGGCGTGTTACA
131 TGATACCACTAAATGTAACACCGCAAACTCAGCCCAGACGTTATGGCCGTATCCGGCGTGTTACA
*
69793898 TTGAAGTGTTTTAGCAAAAACT
196 TTGAAGGGTTTTAGCAAAAACT
69793920 GTGTTTTCAT
Statistics
Matches: 216, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
217 216 1.00
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (217 bp):
TTGGAGACTTAGTGTGCCGCTCAGCAAGAGTTTTTTCAAAACGGTGTGATCCAAGATTTTTTTTT
AAGTAGAAAAAAAACCAAATAATAATAAGGCCCACTTCACAACCCGAGTTTTGCAACCTGGGCTT
TGATACCACTAAATGTAACACCGCAAACTCAGCCCAGACGTTATGGCCGTATCCGGCGTGTTACA
TTGAAGGGTTTTAGCAAAAACT
Found at i:69795091 original size:30 final size:30
Alignment explanation
Indices: 69795057--69795138 Score: 130
Period size: 30 Copynumber: 2.8 Consensus size: 30
69795047 ACATGGTCCA
69795057 TTAGGCCCAAATCACATTTATATGGCCCCC
1 TTAGGCCCAAATCACATTTATATGGCCCCC
* *
69795087 TTAGGCCCAAATCATATTTATATGGCCCCT
1 TTAGGCCCAAATCACATTTATATGGCCCCC
*
69795117 TTAGGCCCAAAT-ACAATTATAT
1 TTAGGCCCAAATCACATTTATAT
69795139 TCATACCCAC
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
29 8 0.17
30 40 0.83
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.30
Consensus pattern (30 bp):
TTAGGCCCAAATCACATTTATATGGCCCCC
Found at i:69799341 original size:16 final size:16
Alignment explanation
Indices: 69799320--69799351 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
69799310 TAAGACCGCT
*
69799320 TAAGTACCAAGCTCTC
1 TAAGTACCAAACTCTC
69799336 TAAGTACCAAACTCTC
1 TAAGTACCAAACTCTC
69799352 CATAGATCCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.31, G:0.09, T:0.25
Consensus pattern (16 bp):
TAAGTACCAAACTCTC
Found at i:69799580 original size:30 final size:30
Alignment explanation
Indices: 69799533--69799621 Score: 137
Period size: 30 Copynumber: 3.0 Consensus size: 30
69799523 TTATGTTCAC
*
69799533 ATGGCCCATTT-GGCCCAAATCACATTTAT
1 ATGGCCCCTTTAGGCCCAAATCACATTTAT
*
69799562 ATGGCCCCTTTAGGCCCAAATCATATTTAT
1 ATGGCCCCTTTAGGCCCAAATCACATTTAT
*
69799592 ATGGCCCCTTTAGGCCCAAATC-CAATTAT
1 ATGGCCCCTTTAGGCCCAAATCACATTTAT
69799621 A
1 A
69799622 CTCATGCCCA
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
29 16 0.29
30 39 0.71
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.30
Consensus pattern (30 bp):
ATGGCCCCTTTAGGCCCAAATCACATTTAT
Found at i:69806268 original size:47 final size:45
Alignment explanation
Indices: 69806211--69806361 Score: 126
Period size: 47 Copynumber: 3.2 Consensus size: 45
69806201 TCCCAAACAC
69806211 GGTCTTACACTGGCTTATATCTCAAGTCGAAGCCATGTCCTAGACAA
1 GGTCTTACACTGGCTTATATCTCAAG-CGAAG-CATGTCCTAGACAA
* * * *
69806258 GGTCTTACACTGAC-TATCATCTCGTAGCTGACGCATGTCCCAGAC-A
1 GGTCTTACACTGGCTTAT-ATCTC-AAGC-GAAGCATGTCCTAGACAA
* * * * * * *
69806304 TGTCTTACACTGGCTTACATCTCGAGGCCAATTCATGTCCTAGATAT
1 GGTCTTACACTGGCTTATATCTC-AAGCGAA-GCATGTCCTAGACAA
69806351 GGTCTTACACT
1 GGTCTTACACT
69806362 AGCTCTCACA
Statistics
Matches: 82, Mismatches: 16, Indels: 12
0.75 0.15 0.11
Matches are distributed among these distances:
45 1 0.01
46 34 0.41
47 42 0.51
48 5 0.06
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.30
Consensus pattern (45 bp):
GGTCTTACACTGGCTTATATCTCAAGCGAAGCATGTCCTAGACAA
Found at i:69806326 original size:46 final size:48
Alignment explanation
Indices: 69806199--69806328 Score: 135
Period size: 47 Copynumber: 2.8 Consensus size: 48
69806189 GCCGATGCCG
* * *
69806199 TGTCCCAAACACGGTCTTACACTGGCTTATATCTC-AAGTCGAAGCCA
1 TGTCCCAGACAAGGTCTTACACTGGCTTACATCTCGAAGTCGAAGCCA
* * * *
69806246 TGTCCTAGACAAGGTCTTACACTGAC-TATCATCTCGTAG-CTGACG-CA
1 TGTCCCAGACAAGGTCTTACACTGGCTTA-CATCTCGAAGTC-GAAGCCA
*
69806293 TGTCCCAGAC-ATGTCTTACACTGGCTTACATCTCGA
1 TGTCCCAGACAAGGTCTTACACTGGCTTACATCTCGA
69806329 GGCCAATTCA
Statistics
Matches: 68, Mismatches: 11, Indels: 9
0.77 0.12 0.10
Matches are distributed among these distances:
46 22 0.32
47 41 0.60
48 5 0.07
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (48 bp):
TGTCCCAGACAAGGTCTTACACTGGCTTACATCTCGAAGTCGAAGCCA
Found at i:69809584 original size:25 final size:25
Alignment explanation
Indices: 69809550--69809600 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
69809540 GGAGAAGAAG
69809550 ATCCCTTGTTATTCGTGTACAATCT
1 ATCCCTTGTTATTCGTGTACAATCT
* *
69809575 ATCCCTTGTTCTTCGTGTAGAATCT
1 ATCCCTTGTTATTCGTGTACAATCT
69809600 A
1 A
69809601 GAGTCTAGAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.43
Consensus pattern (25 bp):
ATCCCTTGTTATTCGTGTACAATCT
Found at i:69813045 original size:42 final size:44
Alignment explanation
Indices: 69812952--69813046 Score: 115
Period size: 44 Copynumber: 2.2 Consensus size: 44
69812942 TGTGTTATCA
* *
69812952 TGTAAGACCACGTCTAGGATGTTGGCATCAACTTCTGATTTACG
1 TGTAAGACCACGTCTAGGACGTTGACATCAACTTCTGATTTACG
* * *
69812996 TGTAAGACCATGTCTGGGACGTTGACATCGTAC-T-TGATTT-CG
1 TGTAAGACCACGTCTAGGACGTTGACATC-AACTTCTGATTTACG
69813038 TGTAAGACC
1 TGTAAGACC
69813047 CTATTTGGGA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
42 11 0.24
43 6 0.13
44 26 0.58
45 2 0.04
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (44 bp):
TGTAAGACCACGTCTAGGACGTTGACATCAACTTCTGATTTACG
Found at i:69814754 original size:26 final size:26
Alignment explanation
Indices: 69814708--69814760 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
69814698 TGAAACATGC
*
69814708 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAAGGGT
* *
69814734 ATTTTGGT-AATTTATCTCCTAAGGGT
1 ATTTAGGTCAATTTAAC-CCTAAGGGT
69814760 A
1 A
69814761 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.40
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAAGGGT
Found at i:69816264 original size:26 final size:26
Alignment explanation
Indices: 69816235--69816342 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
69816225 TGAAATGCCC
* * *
69816235 ATCATGAAAAATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
69816261 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
69816287 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
69816313 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
69816339 ATCA
1 ATCA
69816343 ATTTTTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:69816312 original size:52 final size:52
Alignment explanation
Indices: 69816235--69816342 Score: 189
Period size: 52 Copynumber: 2.1 Consensus size: 52
69816225 TGAAATGCCC
69816235 ATCATGAAAAATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGAAAAATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
* * *
69816287 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGAAAAATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
69816339 ATCA
1 ATCA
69816343 ATTTTTACCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.32
Consensus pattern (52 bp):
ATCATGAAAAATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
Found at i:69818493 original size:19 final size:17
Alignment explanation
Indices: 69818469--69818517 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 17
69818459 TTCTTATGAT
69818469 TTTTTTGTTTGATTTGTGC
1 TTTTTTGTTT--TTTGTGC
*
69818488 TTTTTTGTCTTTTGTGC
1 TTTTTTGTTTTTTGTGC
69818505 TTACTTTTGTTTT
1 TT--TTTTGTTTT
69818518 AATTCAGGAC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
17 9 0.35
19 17 0.65
ACGTcount: A:0.04, C:0.08, G:0.16, T:0.71
Consensus pattern (17 bp):
TTTTTTGTTTTTTGTGC
Found at i:69819991 original size:37 final size:37
Alignment explanation
Indices: 69819941--69820016 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
69819931 AACAGTATGG
69819941 CCCAATTTGAATGCATTGGAGCACCGATCACTGCTTT
1 CCCAATTTGAATGCATTGGAGCACCGATCACTGCTTT
69819978 CCCAATTTGAATGCATTGGAGCACCGATCACTGCTTT
1 CCCAATTTGAATGCATTGGAGCACCGATCACTGCTTT
69820015 CC
1 CC
69820017 TAAGTAGAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (37 bp):
CCCAATTTGAATGCATTGGAGCACCGATCACTGCTTT
Found at i:69820027 original size:37 final size:37
Alignment explanation
Indices: 69819949--69820027 Score: 131
Period size: 37 Copynumber: 2.1 Consensus size: 37
69819939 GGCCCAATTT
* *
69819949 GAATGCATTGGAGCACCGATCACTGCTTTCCCAATTT
1 GAATGCATTGGAGCACCGATCACTGCTTTCCCAAGTA
*
69819986 GAATGCATTGGAGCACCGATCACTGCTTTCCTAAGTA
1 GAATGCATTGGAGCACCGATCACTGCTTTCCCAAGTA
69820023 GAATG
1 GAATG
69820028 ATCCATTGTT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.28
Consensus pattern (37 bp):
GAATGCATTGGAGCACCGATCACTGCTTTCCCAAGTA
Found at i:69822806 original size:32 final size:32
Alignment explanation
Indices: 69822765--69822828 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
69822755 ACAGAATTAT
69822765 ATGCTAGTTTTATCAACTTTAAAGATCTCCCA
1 ATGCTAGTTTTATCAACTTTAAAGATCTCCCA
*
69822797 ATGCTAGTTTTATCAATTTTAAAGATCTCCCA
1 ATGCTAGTTTTATCAACTTTAAAGATCTCCCA
69822829 TGTAAATTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.31, C:0.20, G:0.09, T:0.39
Consensus pattern (32 bp):
ATGCTAGTTTTATCAACTTTAAAGATCTCCCA
Found at i:69826823 original size:19 final size:19
Alignment explanation
Indices: 69826799--69826896 Score: 137
Period size: 19 Copynumber: 5.2 Consensus size: 19
69826789 AATCTTTAAG
69826799 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
69826818 GATATGCAATATCAGATAT
1 GATATGCAATCTTAGATAT
69826837 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
69826854 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
69826873 GATATACAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
69826894 GAT
1 GAT
69826897 CTTGTAAACT
Statistics
Matches: 70, Mismatches: 5, Indels: 6
0.86 0.06 0.07
Matches are distributed among these distances:
17 15 0.21
19 46 0.66
21 9 0.13
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:69826846 original size:36 final size:37
Alignment explanation
Indices: 69826805--69826896 Score: 132
Period size: 36 Copynumber: 2.4 Consensus size: 37
69826795 TAAGGATATG
69826805 CAATCTTAGATATGATATGCAATATCAGATATG-ATA
1 CAATCTTAGATATGATATGCAATATCAGATATGAATA
* *
69826841 CAATCTTAGATATGATATGCAATCTTAGATATGATATA
1 CAATCTTAGATATGATATGCAATATCAGATATGA-ATA
69826879 CAATCTTGAAGATATGAT
1 CAATCTT--AGATATGAT
69826897 CTTGTAAACT
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
36 31 0.62
38 10 0.20
40 9 0.18
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35
Consensus pattern (37 bp):
CAATCTTAGATATGATATGCAATATCAGATATGAATA
Found at i:69829467 original size:40 final size:40
Alignment explanation
Indices: 69829408--69829549 Score: 185
Period size: 40 Copynumber: 3.5 Consensus size: 40
69829398 AACTTTAGTG
* ** *
69829408 GCATTAGCGGCGCTTTTTGAAAAACGATGCTATAGTTTGA
1 GCATTAGCGGCGCTTTTTGAAAATCGCCGCTATAGATTGA
* * *
69829448 GCACTAGCGGCGCTTTTTGAAAATCGCCGTTATAGATCGA
1 GCATTAGCGGCGCTTTTTGAAAATCGCCGCTATAGATTGA
* * *
69829488 GCATTAGCGGCACTTTCTGAAAATCGCCGCTATAGGTTGA
1 GCATTAGCGGCGCTTTTTGAAAATCGCCGCTATAGATTGA
*
69829528 CCATTAGCGGCGCTTTTTGAAA
1 GCATTAGCGGCGCTTTTTGAAA
69829550 CACGCCACAA
Statistics
Matches: 86, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 86 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTTTGAAAATCGCCGCTATAGATTGA
Found at i:69830274 original size:18 final size:18
Alignment explanation
Indices: 69830237--69830290 Score: 54
Period size: 18 Copynumber: 3.0 Consensus size: 18
69830227 CTCTCCCCCC
** *
69830237 ATTCCCTTTTTTTTCCCA
1 ATTCCCTTTTCATTCTCA
* *
69830255 ATTTCTTTTTCATTCTCA
1 ATTCCCTTTTCATTCTCA
*
69830273 ATTCCCTTTTCTTTCTCA
1 ATTCCCTTTTCATTCTCA
69830291 GCTTTTCTCA
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.13, C:0.30, G:0.00, T:0.57
Consensus pattern (18 bp):
ATTCCCTTTTCATTCTCA
Found at i:69833160 original size:15 final size:16
Alignment explanation
Indices: 69833142--69833172 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
69833132 GTTTTTGTCT
69833142 TATATATGAT-TAAAA
1 TATATATGATCTAAAA
69833157 TATATATGATCTAAAA
1 TATATATGATCTAAAA
69833173 GCAAGAGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (16 bp):
TATATATGATCTAAAA
Found at i:69837848 original size:31 final size:31
Alignment explanation
Indices: 69837800--69837884 Score: 111
Period size: 31 Copynumber: 2.8 Consensus size: 31
69837790 TCAATCTCAG
69837800 CATAT-ACTGGGCCGAAGCCTTTACATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
* ** *
69837830 CATGTCACTGGGTTGAAGCCTCTT-CTTTATT
1 CATATCACTGGGCCGAAGCCT-TTACATTATT
69837861 CATATCACTGGGCCGAAGCCTTTA
1 CATATCACTGGGCCGAAGCCTTTA
69837885 TTGTAAATGA
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
30 6 0.13
31 37 0.82
32 2 0.04
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Found at i:69838141 original size:25 final size:25
Alignment explanation
Indices: 69838104--69838172 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
69838094 CTCTTTTAAT
*
69838104 AACTA-GGCAAAGCCCTTTTTGATA
1 AACTAGGGCAAAGCCCTTTTCGATA
*
69838128 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGATA
* *
69838153 AACTGGGGCATAGCCCTTTT
1 AACTAGGGCAAAGCCCTTTT
69838173 GCACTTCCTC
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
24 5 0.12
25 35 0.88
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGATA
Found at i:69838147 original size:24 final size:24
Alignment explanation
Indices: 69838091--69838173 Score: 89
Period size: 25 Copynumber: 3.4 Consensus size: 24
69838081 CTGGAGGCCT
*
69838091 AGCCTCTTTTAAT-AACTA-GGCAA
1 AGCC-CTTTTGATAAACTAGGGCAA
69838114 AGCCCTTTTTGATAAACTAGGGCAA
1 AGCCC-TTTTGATAAACTAGGGCAA
* * *
69838139 AGCCCTTTTCGGTAAACTGGGGCAT
1 AGCCCTTTT-GATAAACTAGGGCAA
69838164 AGCCCTTTTG
1 AGCCCTTTTG
69838174 CACTTCCTCC
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
22 1 0.02
23 10 0.19
24 10 0.19
25 31 0.60
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTAGGGCAA
Found at i:69838642 original size:20 final size:21
Alignment explanation
Indices: 69838617--69838656 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
69838607 TGGGCCTGAA
*
69838617 AGCCCATTG-GGCCCAATTTC
1 AGCCCATCGAGGCCCAATTTC
69838637 AGCCCATCGAGGCCCAATTT
1 AGCCCATCGAGGCCCAATTT
69838657 ACCGTGATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.23, C:0.35, G:0.20, T:0.23
Consensus pattern (21 bp):
AGCCCATCGAGGCCCAATTTC
Found at i:69840454 original size:17 final size:17
Alignment explanation
Indices: 69840432--69840467 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
69840422 CTGCTATAAG
*
69840432 TATGTTTAATATTCGGC
1 TATGTTTAATATTCAGC
69840449 TATGTTTAATATTCAGC
1 TATGTTTAATATTCAGC
69840466 TA
1 TA
69840468 GGCTTGGGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.28, C:0.11, G:0.14, T:0.47
Consensus pattern (17 bp):
TATGTTTAATATTCAGC
Found at i:69843462 original size:27 final size:27
Alignment explanation
Indices: 69843432--69843520 Score: 83
Period size: 27 Copynumber: 3.3 Consensus size: 27
69843422 TCAGTTTACT
69843432 AAAATTA-TCGAAATACCCTTAG-TTTGA
1 AAAATTACT-GAAATACCC-TAGATTTGA
* * *
69843459 AAAAATACTGAAATACCCTCGATTTGT
1 AAAATTACTGAAATACCCTAGATTTGA
* * * *
69843486 AAAATTACTGAAATACCTTCGACTTGT
1 AAAATTACTGAAATACCCTAGATTTGA
69843513 AAAATTAC
1 AAAATTAC
69843521 CAAAGTAATC
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
26 2 0.04
27 51 0.94
28 1 0.02
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.31
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTAGATTTGA
Found at i:69843563 original size:27 final size:27
Alignment explanation
Indices: 69843533--69843715 Score: 204
Period size: 27 Copynumber: 6.6 Consensus size: 27
69843523 AAGTAATCCT
*
69843533 GATTTACAGAATTACCGTTTTACCCCC
1 GATTTACAGAATTACCGTTTTACCCTC
*
69843560 GATTTACATAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* * *
69843587 GATTTACATAATTATCATTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* *
69843614 GACTTACGGTAATAGAATTACCATTTTACCCTC
1 GA-TT----T-ACAGAATTACCGTTTTACCCTC
* *
69843647 GATTTACAGAATTACTGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTC
* *
69843674 GATTTATAGAATTACTGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
69843701 GATTTACAAAATTAC
1 GATTTACAGAATTAC
69843716 TAAAATACCC
Statistics
Matches: 135, Mismatches: 15, Indels: 12
0.83 0.09 0.07
Matches are distributed among these distances:
27 108 0.80
28 3 0.02
32 3 0.02
33 21 0.16
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.39
Consensus pattern (27 bp):
GATTTACAGAATTACCGTTTTACCCTC
Found at i:69843644 original size:87 final size:87
Alignment explanation
Indices: 69843540--69843707 Score: 239
Period size: 87 Copynumber: 1.9 Consensus size: 87
69843530 CCTGATTTAC
* * *
69843540 AGAATTACCGTTTTACCCCCGATTTACATAATTACCGTTTTACCCTCGATTTACATAATTA-TCA
1 AGAATTACCATTTTACCCCCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACT-A
69843604 TTTTACCCTCGACTTACGGTAAT
65 TTTTACCCTCGACTTACGGTAAT
* * * * *
69843627 AGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTTGATTTATAGAATTACTGT
1 AGAATTACCATTTTACCCCCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTAT
*
69843692 TTTACCCTCGATTTAC
66 TTTACCCTCGACTTAC
69843708 AAAATTACTA
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
87 70 0.99
88 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.40
Consensus pattern (87 bp):
AGAATTACCATTTTACCCCCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTAT
TTTACCCTCGACTTACGGTAAT
Found at i:69843725 original size:54 final size:54
Alignment explanation
Indices: 69843625--69843744 Score: 150
Period size: 54 Copynumber: 2.2 Consensus size: 54
69843615 ACTTACGGTA
* ****
69843625 ATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTTGATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGATTT
** *
69843679 ATAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTT
1 ATAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGATTT
* *
69843733 GTAAAATTACCA
1 ATAGAATTACCA
69843745 AAATACCCTT
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.39
Consensus pattern (54 bp):
ATAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGATTT
Found at i:69843923 original size:27 final size:27
Alignment explanation
Indices: 69843640--69843919 Score: 152
Period size: 27 Copynumber: 10.3 Consensus size: 27
69843630 ATTACCATTT
* * ***
69843640 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTTGATTTACAAAATTACTGAAA
* * ***
69843667 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTTGATTTACAAAATTACTGAAA
* *
69843694 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACTGAAA
* ** **
69843721 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACTGAAA
** **
69843748 TACCCTT-AGTTTGTAAAATTACCAAAA
1 TACCCTTGA-TTTACAAAATTACTGAAA
* * ***
69843775 TACCTTTGGTTTGTGAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACTGAAA
** ** **
69843802 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACTGAAA
* * * *
69843829 TACCCCTAATTTACAAAGTTACAGAAA
1 TACCCTTGATTTACAAAATTACTGAAA
69843856 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTAC--AAAATTACT-GAAA
* *
69843885 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACTGAAA
69843912 TACCCTTG
1 TACCCTTG
69843920 GTTTGTAGAT
Statistics
Matches: 204, Mismatches: 41, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
27 179 0.88
28 7 0.03
29 18 0.09
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.35
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACTGAAA
Found at i:69843933 original size:27 final size:27
Alignment explanation
Indices: 69843708--69843926 Score: 190
Period size: 27 Copynumber: 8.0 Consensus size: 27
69843698 CTCGATTTAC
69843708 AAAATTACTAAAATACCCTTGGTTTGT
1 AAAATTACTAAAATACCCTTGGTTTGT
* *
69843735 AAAATTACCAAAATACCCTTAGTTTGT
1 AAAATTACTAAAATACCCTTGGTTTGT
* *
69843762 AAAATTACCAAAATACCTTTGGTTTGT
1 AAAATTACTAAAATACCCTTGGTTTGT
* * ***
69843789 GAAATTACTGAAATACCCTCAATTTGT
1 AAAATTACTAAAATACCCTTGGTTTGT
* * ** **
69843816 AAAATTACCAAAATACCCCTAATTTAC
1 AAAATTACTAAAATACCCTTGGTTTGT
* * *
69843843 AAAGTTAC-AGAAATACCCTTGACTTTCT
1 AAAATTACTA-AAATACCCTTG-GTTTGT
* **
69843871 AAAAATTA-TAGAAATACCATTGGTTTAC
1 -AAAATTACTA-AAATACCCTTGGTTTGT
*
69843899 AAAATTACTGAAATACCCTTGGTTTGT
1 AAAATTACTAAAATACCCTTGGTTTGT
69843926 A
1 A
69843927 GATTTACCAA
Statistics
Matches: 154, Mismatches: 33, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
26 1 0.01
27 128 0.83
28 7 0.05
29 18 0.12
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (27 bp):
AAAATTACTAAAATACCCTTGGTTTGT
Found at i:69844012 original size:54 final size:54
Alignment explanation
Indices: 69843945--69844068 Score: 119
Period size: 54 Copynumber: 2.3 Consensus size: 54
69843935 AAAACACCTT
* * *
69843945 TGTAGGATGAAATGACT-AAAATACCCCTATTA-GGTAAAAAGACCGTAA-AGCCCC
1 TGTAGGGTAAAATGACTGAAAA-ACCCCT-GTAGGGTAAAAAGACCGTAATA-CCCC
* * * **
69843999 TGTAGGGTAAAATGGCTGTAAAGCCCCTGTAGGGTAAAGTGACCGTAATACCCC
1 TGTAGGGTAAAATGACTGAAAAACCCCTGTAGGGTAAAAAGACCGTAATACCCC
*
69844053 TGTATGGTAAAATGAC
1 TGTAGGGTAAAATGAC
69844069 GAATATGCCC
Statistics
Matches: 57, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
53 2 0.04
54 51 0.89
55 4 0.07
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (54 bp):
TGTAGGGTAAAATGACTGAAAAACCCCTGTAGGGTAAAAAGACCGTAATACCCC
Found at i:69844068 original size:27 final size:27
Alignment explanation
Indices: 69843977--69844068 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
69843967 ACCCCTATTA
*
69843977 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
69844004 GGTAAAATGGCTGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
69844031 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
69844058 GGTAAAATGAC
1 GGTAAAATGAC
69844069 GAATATGCCC
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 55 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:69844898 original size:26 final size:26
Alignment explanation
Indices: 69844869--69845044 Score: 273
Period size: 26 Copynumber: 6.8 Consensus size: 26
69844859 GAGGAAGTGC
69844869 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
69844895 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
69844921 AAAAGGGCTTATGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
69844947 AAAAGGGCTTATGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
69844973 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* *
69844999 AAAAGGGCTTATGCTCCAGGTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
69845025 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
69845045 ATTAAAGAGG
Statistics
Matches: 136, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
25 8 0.06
26 128 0.94
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:69844998 original size:78 final size:78
Alignment explanation
Indices: 69844869--69845044 Score: 309
Period size: 78 Copynumber: 2.3 Consensus size: 78
69844859 GAGGAAGTGC
*
69844869 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATG
1 AAAAGGGCTTATGCCCCAGTTTACCAAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATG
*
69844934 CCCCAGTTTACCA
66 CCCCAGGTTACCA
69844947 AAAAGGGCTTATGCCCCAGTTTACCAAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATG
1 AAAAGGGCTTATGCCCCAGTTTACCAAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATG
* *
69845012 CTCCAGGTTACCG
66 CCCCAGGTTACCA
69845025 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
69845045 ATTAAAGAGG
Statistics
Matches: 94, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
77 10 0.11
78 84 0.89
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.26
Consensus pattern (78 bp):
AAAAGGGCTTATGCCCCAGTTTACCAAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATG
CCCCAGGTTACCA
Found at i:69845248 original size:42 final size:42
Alignment explanation
Indices: 69845189--69845280 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
69845179 TAGTCTCCCC
* ** * *
69845189 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTA
69845231 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTA
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTA
69845273 AAATGGGC
1 AAATGGGC
69845281 CTATGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTA
Found at i:69845351 original size:31 final size:31
Alignment explanation
Indices: 69845304--69845411 Score: 125
Period size: 31 Copynumber: 3.5 Consensus size: 31
69845294 CGTTTACAGT
69845304 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
* * * *
69845335 AAATGCTTTGGCCCAGTGATATTATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
*
69845366 AAAGGCTTCGGCCCAGT--AATCG-TTAAATG-
1 AAAGGCTTCGGCCCAGTGAAAT-GATT-TATGA
69845395 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
69845412 ATATGTCAAG
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
29 21 0.32
30 3 0.05
31 42 0.64
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:69849476 original size:19 final size:19
Alignment explanation
Indices: 69849452--69849490 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
69849442 AAAACCAAAT
69849452 TAACATAAATTATCTAAAA
1 TAACATAAATTATCTAAAA
69849471 TAACATAAATTATCTAAAA
1 TAACATAAATTATCTAAAA
69849490 T
1 T
69849491 TAAGACAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.33
Consensus pattern (19 bp):
TAACATAAATTATCTAAAA
Found at i:69859623 original size:25 final size:25
Alignment explanation
Indices: 69859579--69859628 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
69859569 ATGACAACCA
* *
69859579 AATTTACATATACAATCATATTATAT
1 AATTTACATAAACAAACATA-TATAT
69859605 AATTTA-ATAAACAAACATATATAT
1 AATTTACATAAACAAACATATATAT
69859629 TTTCAATACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.23
25 11 0.50
26 6 0.27
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (25 bp):
AATTTACATAAACAAACATATATAT
Found at i:69865956 original size:48 final size:48
Alignment explanation
Indices: 69865865--69865956 Score: 148
Period size: 48 Copynumber: 1.9 Consensus size: 48
69865855 CATTAGGAAA
* **
69865865 TTCATTGATTTGGCTTCAGGCCATGATATTGGCACTTTGGGTGCGAGC
1 TTCATTGATTTGGCTTCAGGCCATGATATTAGCACTTCAGGTGCGAGC
*
69865913 TTCATTGATTTGGCTTTAGGCCATGATATTAGCACTTCAGGTGC
1 TTCATTGATTTGGCTTCAGGCCATGATATTAGCACTTCAGGTGC
69865957 AGGACACATT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.18, C:0.18, G:0.26, T:0.37
Consensus pattern (48 bp):
TTCATTGATTTGGCTTCAGGCCATGATATTAGCACTTCAGGTGCGAGC
Found at i:69865967 original size:48 final size:48
Alignment explanation
Indices: 69865867--69865995 Score: 138
Period size: 48 Copynumber: 2.7 Consensus size: 48
69865857 TTAGGAAATT
* ** *
69865867 CATTGATTTGGCTTCAGGCCATGATATTGGCACTTTGGGTGCGAGCTT
1 CATTGATTTGGCTTCAGGCCATGATATTAGCACTTCAGGTGCGAGCTA
*
69865915 CATTGATTTGGCTTTAGGCCATGATATTAGCACTTCAGGTGC-AGGAC-A
1 CATTGATTTGGCTTCAGGCCATGATATTAGCACTTCAGGTGCGA-G-CTA
* * *
69865963 CATTGAGTTGGCTTCGGGCCTTGAT-TTGAGCAC
1 CATTGATTTGGCTTCAGGCCATGATATT-AGCAC
69865996 ATTGTGTACG
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
47 3 0.04
48 65 0.94
49 1 0.01
ACGTcount: A:0.19, C:0.19, G:0.28, T:0.33
Consensus pattern (48 bp):
CATTGATTTGGCTTCAGGCCATGATATTAGCACTTCAGGTGCGAGCTA
Found at i:69876033 original size:9 final size:9
Alignment explanation
Indices: 69876019--69876052 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
69876009 TGAGTTTTAT
69876019 TGAATTTTG
1 TGAATTTTG
69876028 TGAATTTTG
1 TGAATTTTG
69876037 TGAATTTTG
1 TGAATTTTG
*
69876046 TGTATTT
1 TGAATTT
69876053 ATGAAATAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.21, C:0.00, G:0.21, T:0.59
Consensus pattern (9 bp):
TGAATTTTG
Found at i:69876497 original size:43 final size:43
Alignment explanation
Indices: 69876449--69876649 Score: 226
Period size: 43 Copynumber: 4.7 Consensus size: 43
69876439 GTTATCGAGA
*
69876449 TGTGATTACATGTAAGACCATGTCTGGGACATTGACATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGACATCGTAT
* *
69876492 TGTGATTACATTTAAGACCATGTCTGGGACATTGACATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGACATCGTAT
* * *
69876535 TGTGATTACGTGTAAGACCATATCTGGGACATTGGCATCGTTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGACATCG-TAT
*** * * * *
69876579 T-TGATTTTGTGCAAGACCCTGTCTGGGACAGTGGCATCG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGACATCGTAT
* * *
69876620 ATGTGATAACATGTAAGATCATATCTGGGA
1 -TGTGATTACATGTAAGACCATGTCTGGGA
69876650 TATGGCATTG
Statistics
Matches: 135, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
41 2 0.01
42 1 0.01
43 128 0.95
44 4 0.03
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGACATCGTAT
Found at i:69878031 original size:42 final size:42
Alignment explanation
Indices: 69877985--69878070 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
69877975 GCTATATAAC
*
69877985 TTAGTAAGTCCATATGAAAATAATAAGAGATTTGTTGACATG
1 TTAGTAAGTCCATACGAAAATAATAAGAGATTTGTTGACATG
*
69878027 TTAGTAAGTCTATACGAAAATAATAAGAGATTTGTTGACATG
1 TTAGTAAGTCCATACGAAAATAATAAGAGATTTGTTGACATG
69878069 TT
1 TT
69878071 TATGTCATAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.40, C:0.07, G:0.19, T:0.35
Consensus pattern (42 bp):
TTAGTAAGTCCATACGAAAATAATAAGAGATTTGTTGACATG
Found at i:69879093 original size:48 final size:47
Alignment explanation
Indices: 69879034--69879270 Score: 224
Period size: 48 Copynumber: 5.0 Consensus size: 47
69879024 GGGTAAATCA
* * * * *
69879034 CTGATGTCATGTCCCAGACATGGTCTTACATTGGCTCACATGTCGAGG
1 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC-AGG
** * *
69879082 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTGTCTCAATG
1 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC-AGG
* *
69879130 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACATGG
1 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCA-GG
* * * **
69879178 CCT-ATGCCATGTCCCAGACATGGTCTTACATTGGCTCTTATAATGTGG
1 -CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATCAGG
** * * * *
69879226 CCAATGCCATGTTCCAAACATGGTCTTACACTAGCACACATATCA
1 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCA
69879271 CCCAAATGTC
Statistics
Matches: 153, Mismatches: 32, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
47 4 0.03
48 147 0.96
49 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (47 bp):
CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAGG
Found at i:69879205 original size:96 final size:95
Alignment explanation
Indices: 69879036--69879267 Score: 265
Period size: 96 Copynumber: 2.4 Consensus size: 95
69879026 GTAAATCACT
* * * **
69879036 GATGTCATGTCCCAGACATGGTCTTACATTGGCTCACATGTCGAGGCTGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACGAGGCTGATGCCATGTCCCAGAC
*
69879101 ATGGTCTTACACTAGCTCTTGTCTCAA-T-GCC
66 ATGGTCTTACACTAGCTC-T-TAT-AAGTGGCC
*
69879132 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAC-ATGGCCT-ATGCCATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACGA-GG-CTGATGCCATGTCCCAG
* *
69879195 ACATGGTCTTACATTGGCTCTTATAATGTGGCC
64 ACATGGTCTTACACTAGCTCTTATAA-GTGGCC
* * * *
69879228 AATGCCATGTTCCAAACATGGTCTTACACTAGCACACATA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATA
69879268 TCACCCAAAT
Statistics
Matches: 117, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
93 2 0.02
94 2 0.02
95 3 0.03
96 108 0.92
97 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (95 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACGAGGCTGATGCCATGTCCCAGAC
ATGGTCTTACACTAGCTCTTATAAGTGGCC
Found at i:69879761 original size:70 final size:70
Alignment explanation
Indices: 69879655--69879922 Score: 430
Period size: 70 Copynumber: 3.8 Consensus size: 70
69879645 TTCCTTGATC
* * * *
69879655 TATAACAACA-CATTTTAATTAGCTAAACACCATGAATTTGTCCTAATTTGGACAGCCAATAATT
1 TATAACAGCAGCATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGATAGCCAATAATT
*
69879719 TACAA
66 TACAG
* *
69879724 TATTACAGCAGCATATTAATTAGCTAAGCACTATGAATTTGTCCTAATTTGGATAGCCAATAATT
1 TATAACAGCAGCATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGATAGCCAATAATT
*
69879789 TATAG
66 TACAG
* * *
69879794 TATAACAGCAGCATATAAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGAGAACCAATAATT
1 TATAACAGCAGCATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGATAGCCAATAATT
69879859 TACAG
66 TACAG
69879864 TATAACAGCAGCATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGATAGCCA
1 TATAACAGCAGCATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGATAGCCA
69879923 TAAAAAATAA
Statistics
Matches: 181, Mismatches: 17, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
69 8 0.04
70 173 0.96
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (70 bp):
TATAACAGCAGCATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGATAGCCAATAATT
TACAG
Found at i:69883261 original size:38 final size:38
Alignment explanation
Indices: 69883210--69883286 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
69883200 GGTTTACACC
69883210 GCGATTTTGGAAGAAACTACAAAAAGCTCTTGGCACGA
1 GCGATTTTGGAAGAAACTACAAAAAGCTCTTGGCACGA
69883248 GCGATTTTGGAAGAAACTACAAAAAGCTCTTGGCACGA
1 GCGATTTTGGAAGAAACTACAAAAAGCTCTTGGCACGA
69883286 G
1 G
69883287 GTTGAATTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (38 bp):
GCGATTTTGGAAGAAACTACAAAAAGCTCTTGGCACGA
Found at i:69885351 original size:48 final size:48
Alignment explanation
Indices: 69885280--69885392 Score: 154
Period size: 48 Copynumber: 2.4 Consensus size: 48
69885270 CCTTAGGAAA
* *
69885280 TTCATTGATTTTGCTTCAGGCCATGATATTGGCACTTCGAGTGTGAGT
1 TTCATTGATTTGGCTTCAGGCCATGATATTAGCACTTCGAGTGTGAGT
* * * *
69885328 TTCATTGGTTTGGTTTCAGGCCATGATATTAGCATTTCGAGTGTGAGA
1 TTCATTGATTTGGCTTCAGGCCATGATATTAGCACTTCGAGTGTGAGT
* *
69885376 TACATTGAGTTGGCTTC
1 TTCATTGATTTGGCTTC
69885393 GGGTTATTAT
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 55 1.00
ACGTcount: A:0.19, C:0.15, G:0.26, T:0.40
Consensus pattern (48 bp):
TTCATTGATTTGGCTTCAGGCCATGATATTAGCACTTCGAGTGTGAGT
Found at i:69888117 original size:43 final size:44
Alignment explanation
Indices: 69888069--69888272 Score: 235
Period size: 44 Copynumber: 4.7 Consensus size: 44
69888059 AGCTCGTATA
*
69888069 ATGCCAACGTCCCAGACGTGGTCTTACATGTAA-TCA-AATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAGTCATAA-ATCG
* *
69888112 ATGCC-ACTGTCCCAGATAG-GGTCTTACACGTAAGTCATAAGTCG
1 ATGCCAAC-GTCCCAGA-CGTGGTCTTACACGTAAGTCATAAATCG
*
69888156 ATGCCAACGTCCCAGACGTGGTCTTACATGTAA-TCA-AATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAGTCATAA-ATCG
*
69888199 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGTAAGTCATAAATTG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAAGTCATAAATCG
* *
69888243 ATGCCAACGTCCCAAACGTGGTCGTACACG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG
69888273 ATAACACATA
Statistics
Matches: 138, Mismatches: 10, Indels: 25
0.80 0.06 0.14
Matches are distributed among these distances:
42 6 0.04
43 61 0.44
44 63 0.46
45 8 0.06
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAGTCATAAATCG
Found at i:69888170 original size:44 final size:43
Alignment explanation
Indices: 69888069--69888285 Score: 216
Period size: 43 Copynumber: 5.0 Consensus size: 43
69888059 AGCTCGTATA
* *
69888069 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGAAGTGGTCTTACACGTAATCAAATATCG
*
69888112 ATGCC-ACTGTCCCAGATAG-GGTCTTACACGTAAGTCATAA-GTCG
1 ATGCCAAC-GTCCCAGA-AGTGGTCTTACACGTAA-TCA-AATATCG
* *
69888156 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGAAGTGGTCTTACACGTAATCAAATATCG
*
69888199 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGTAAGTCATAA-ATTG
1 ATGCCAAC-GTCCCAGA-AGTGGTCTTACACGTAA-TCA-AATATCG
* *
69888243 ATGCCAACGTCCCA-AACGTGGTCGTACACGATAA-CACATATCG
1 ATGCCAACGTCCCAGAA-GTGGTCTTACACG-TAATCAAATATCG
69888286 GATCCTATGT
Statistics
Matches: 146, Mismatches: 12, Indels: 32
0.77 0.06 0.17
Matches are distributed among these distances:
42 8 0.05
43 66 0.45
44 61 0.42
45 11 0.08
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGAAGTGGTCTTACACGTAATCAAATATCG
Found at i:69888285 original size:87 final size:87
Alignment explanation
Indices: 69888069--69888270 Score: 359
Period size: 87 Copynumber: 2.3 Consensus size: 87
69888059 AGCTCGTATA
*
69888069 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGATAGGGT
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGGGT
*
69888134 CTTACACGTAAGTCATAAGTCG
66 CTTACACGTAAGTCATAAATCG
69888156 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGGGT
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGGGT
*
69888221 CTTACACGTAAGTCATAAATTG
66 CTTACACGTAAGTCATAAATCG
* *
69888243 ATGCCAACGTCCCAAACGTGGTCGTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
69888271 CGATAACACA
Statistics
Matches: 110, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
87 110 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.24
Consensus pattern (87 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGGGT
CTTACACGTAAGTCATAAATCG
Found at i:69890691 original size:26 final size:26
Alignment explanation
Indices: 69890662--69890845 Score: 323
Period size: 26 Copynumber: 7.1 Consensus size: 26
69890652 TGATACAAAT
*
69890662 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
69890688 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* * *
69890714 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
69890740 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
69890766 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
69890792 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
69890818 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
69890844 TG
1 TG
69890846 GTGGGCATTT
Statistics
Matches: 150, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 150 1.00
ACGTcount: A:0.32, C:0.05, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:69898783 original size:36 final size:36
Alignment explanation
Indices: 69898743--69898815 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 36
69898733 GAAAATCAAT
*
69898743 CATTTTACCTTACACGGGTATTACAGTCATTTTACC
1 CATTTTACCCTACACGGGTATTACAGTCATTTTACC
* * * *
69898779 CATTTTGCCCTATAGGGGTATTTCAGTCATTTTACC
1 CATTTTACCCTACACGGGTATTACAGTCATTTTACC
69898815 C
1 C
69898816 TATAGGGTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.40
Consensus pattern (36 bp):
CATTTTACCCTACACGGGTATTACAGTCATTTTACC
Done.