Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 212 of 322
Found at i:69898801 original size:27 final size:26
Alignment explanation
Indices: 69898771--69898828 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 26
69898761 TATTACAGTC
* *
69898771 ATTTTACCCATTTTGCCCTATAGGGGT
1 ATTTCACCCATTTTACCCTATA-GGGT
**
69898798 ATTTCAGTCATTTTACCCTATAGGGT
1 ATTTCACCCATTTTACCCTATAGGGT
69898824 ATTTC
1 ATTTC
69898829 GGTCACCATT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 9 0.33
27 18 0.67
ACGTcount: A:0.21, C:0.21, G:0.16, T:0.43
Consensus pattern (26 bp):
ATTTCACCCATTTTACCCTATAGGGT
Found at i:69898833 original size:26 final size:27
Alignment explanation
Indices: 69898779--69898833 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
69898769 TCATTTTACC
*
69898779 CATTTTGCCCTATAGGGGTATTTCAGT
1 CATTTTACCCTATAGGGGTATTTCAGT
*
69898806 CATTTTACCCTATA-GGGTATTTCGGT
1 CATTTTACCCTATAGGGGTATTTCAGT
69898832 CA
1 CA
69898834 CCATTTCGGC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 13 0.50
27 13 0.50
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.40
Consensus pattern (27 bp):
CATTTTACCCTATAGGGGTATTTCAGT
Found at i:69899254 original size:27 final size:27
Alignment explanation
Indices: 69899224--69899314 Score: 146
Period size: 27 Copynumber: 3.4 Consensus size: 27
69899214 GGGTAAAATG
*
69899224 GGTAAAATGACTGTAATACCCCTGTAG
1 GGTAAAATGACTGTAATACCCCTGTAA
*
69899251 GGTAAAATGACTATAATACCCCTGTAA
1 GGTAAAATGACTGTAATACCCCTGTAA
* *
69899278 GGTAACATGACTGTAATACCTCTGTAA
1 GGTAAAATGACTGTAATACCCCTGTAA
69899305 GGTAAAATGA
1 GGTAAAATGA
69899315 TTGTTTTGCC
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.26
Consensus pattern (27 bp):
GGTAAAATGACTGTAATACCCCTGTAA
Found at i:69901458 original size:24 final size:25
Alignment explanation
Indices: 69901431--69901484 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 25
69901421 AGGGATTGTA
69901431 GGAGGGAGTT-GAGGAGAGA-TATAG
1 GGAGGGA-TTCGAGGAGAGAGTATAG
* * *
69901455 GGAGAGATTCTAGGAGAGAGTTTAG
1 GGAGGGATTCGAGGAGAGAGTATAG
69901480 GGAGG
1 GGAGG
69901485 TTTGAAGTGA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
23 2 0.08
24 14 0.58
25 8 0.33
ACGTcount: A:0.31, C:0.02, G:0.48, T:0.19
Consensus pattern (25 bp):
GGAGGGATTCGAGGAGAGAGTATAG
Found at i:69902766 original size:27 final size:27
Alignment explanation
Indices: 69902736--69902830 Score: 136
Period size: 27 Copynumber: 3.5 Consensus size: 27
69902726 AGGGTAAAAT
*
69902736 GGGTAAAATGACTGTAATACCCCAGTA
1 GGGTAAAATGACTGTAATACCCCTGTA
* * *
69902763 GGGTAAAATGACTATAATACCCTTGTG
1 GGGTAAAATGACTGTAATACCCCTGTA
*
69902790 GGGTAAAATTACTGTAATACCCCTGTA
1 GGGTAAAATGACTGTAATACCCCTGTA
*
69902817 AGGTAAAATGACTG
1 GGGTAAAATGACTG
69902831 ATTTGTCCTA
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (27 bp):
GGGTAAAATGACTGTAATACCCCTGTA
Found at i:69903014 original size:36 final size:36
Alignment explanation
Indices: 69902974--69903044 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
69902964 GTACAGATAT
* * *
69902974 GGTTGCATGGGTCGTCCAAGACGACTGTGGACCTAA
1 GGTTGCACGAGTCGCCCAAGACGACTGTGGACCTAA
69903010 GGTTGCACGAGTCGCCCAAGACGACTGTGGACCTA
1 GGTTGCACGAGTCGCCCAAGACGACTGTGGACCTA
69903045 CTGATGGATT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.23, C:0.25, G:0.32, T:0.20
Consensus pattern (36 bp):
GGTTGCACGAGTCGCCCAAGACGACTGTGGACCTAA
Found at i:69905449 original size:42 final size:42
Alignment explanation
Indices: 69905337--69905500 Score: 154
Period size: 43 Copynumber: 3.8 Consensus size: 42
69905327 AGAAAGCTTG
* * * * * *
69905337 TACAATGCTAACGTCCCAAACGTGGTCTTACATGTAATCAAA
1 TACAATGCCAACATCCTAGACGTGGTCTTACACGAAATCAAA
* *
69905379 TATCAATGCC-ACTATCCTAGATAG-GGTCTTACACGAAACCAAA
1 TA-CAATGCCAAC-ATCCTAGA-CGTGGTCTTACACGAAATCAAA
*
69905422 TACGATGCCAACATCCTAGACGTGGTCTTACACGTAAATCATAA
1 TACAATGCCAACATCCTAGACGTGGTCTTACACG-AAATCA-AA
* *
69905466 GT-CAATGCCAACATCCTAAATGTGGTCTTACACGA
1 -TACAATGCCAACATCCTAGACGTGGTCTTACACGA
69905501 TAACACATAT
Statistics
Matches: 100, Mismatches: 14, Indels: 15
0.78 0.11 0.12
Matches are distributed among these distances:
41 1 0.01
42 29 0.29
43 37 0.37
44 32 0.32
45 1 0.01
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (42 bp):
TACAATGCCAACATCCTAGACGTGGTCTTACACGAAATCAAA
Found at i:69905483 original size:44 final size:42
Alignment explanation
Indices: 69905356--69905499 Score: 143
Period size: 44 Copynumber: 3.4 Consensus size: 42
69905346 AACGTCCCAA
*
69905356 ACGTGGTCTTACATGT-AATCAAATATCAATGCC-ACTATCCTAG
1 ACGTGGTCTTACACGTAAATC-AA-ATCAATGCCAAC-ATCCTAG
* * *
69905399 ATAG-GGTCTTACACG-AAACCAAATACGATGCCAACATCCTAG
1 A-CGTGGTCTTACACGTAAATCAAAT-CAATGCCAACATCCTAG
*
69905441 ACGTGGTCTTACACGTAAATCATAAGTCAATGCCAACATCCTAA
1 ACGTGGTCTTACACGTAAATCA-AA-TCAATGCCAACATCCTAG
*
69905485 ATGTGGTCTTACACG
1 ACGTGGTCTTACACG
69905500 ATAACACATA
Statistics
Matches: 84, Mismatches: 9, Indels: 15
0.78 0.08 0.14
Matches are distributed among these distances:
41 3 0.04
42 27 0.32
43 21 0.25
44 32 0.38
45 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (42 bp):
ACGTGGTCTTACACGTAAATCAAATCAATGCCAACATCCTAG
Found at i:69906550 original size:37 final size:37
Alignment explanation
Indices: 69906497--69906599 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
69906487 CGAATAGTCC
*
69906497 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
69906534 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
69906571 CCACACGTAATCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
69906600 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:69906798 original size:48 final size:48
Alignment explanation
Indices: 69906732--69906912 Score: 335
Period size: 48 Copynumber: 3.8 Consensus size: 48
69906722 CGGCCACAAT
* *
69906732 ATACACACATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCAC
1 ATACACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
69906780 ATACACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
1 ATACACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
*
69906828 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
1 ATACACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
69906876 ATACACATATCTCATACATATTTCACACTAGCCATTC
1 ATACACATATCTCATACATATTTCACACTAGCCATTC
69906913 CATATTTCAC
Statistics
Matches: 129, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 129 1.00
ACGTcount: A:0.31, C:0.31, G:0.06, T:0.31
Consensus pattern (48 bp):
ATACACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
Found at i:69906932 original size:78 final size:78
Alignment explanation
Indices: 69906843--69906990 Score: 287
Period size: 78 Copynumber: 1.9 Consensus size: 78
69906833 CATATCTCAT
69906843 ACATATTTCACACTAGCCATTCGGCTTTACCACATACACATATCTCATACATATTTCACACTAGC
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATACACATATCTCATACATATTTCACACTAGC
69906908 CATTCCATATTTC
66 CATTCCATATTTC
*
69906921 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGC
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATACACATATCTCATACATATTTCACACTAGC
69906986 CATTC
66 CATTC
69906991 GGCTTTACCA
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
78 69 1.00
ACGTcount: A:0.31, C:0.30, G:0.05, T:0.33
Consensus pattern (78 bp):
ACATATTTCACACTAGCCATTCGGCTTTACCACATACACATATCTCATACATATTTCACACTAGC
CATTCCATATTTC
Found at i:69906982 original size:48 final size:48
Alignment explanation
Indices: 69906921--69907148 Score: 411
Period size: 48 Copynumber: 4.7 Consensus size: 48
69906911 TCCATATTTC
69906921 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
69906969 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
69907017 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
69907065 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAT
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--AT
* * *
69907115 ATATATTTCACATTAGCCTTTCGGCTTTACCACA
1 ACATATTTCACACTAGCCATTCGGCTTTACCACA
69907149 CACATATATA
Statistics
Matches: 175, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
48 142 0.81
50 33 0.19
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.34
Consensus pattern (48 bp):
ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
Found at i:69907020 original size:126 final size:126
Alignment explanation
Indices: 69906795--69907038 Score: 479
Period size: 126 Copynumber: 1.9 Consensus size: 126
69906785 CATATCTCAT
69906795 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGC
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGC
69906860 CATTCGGCTTTACCACATACACATATCTCATACATATTTCACACTAGCCATTCCATATTTC
66 CATTCGGCTTTACCACATACACATATCTCATACATATTTCACACTAGCCATTCCATATTTC
69906921 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGC
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGC
*
69906986 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTC
66 CATTCGGCTTTACCACATACACATATCTCATACATATTTCACACTAGCCATTC
69907039 GGCTTTACCA
Statistics
Matches: 117, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
126 117 1.00
ACGTcount: A:0.31, C:0.30, G:0.06, T:0.33
Consensus pattern (126 bp):
ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGC
CATTCGGCTTTACCACATACACATATCTCATACATATTTCACACTAGCCATTCCATATTTC
Found at i:69907037 original size:174 final size:174
Alignment explanation
Indices: 69906747--69907086 Score: 662
Period size: 174 Copynumber: 2.0 Consensus size: 174
69906737 CACATCTCCT
69906747 ACATATTTCACACTAGCCATTCGGCTTTACCACATACACATATCTCATACATATTTCACACTAGC
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATACACATATCTCATACATATTTCACACTAGC
69906812 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
66 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
69906877 TACACATATCTCATACATATTTCACACTAGCCATTCCATATTTC
131 TACACATATCTCATACATATTTCACACTAGCCATTCCATATTTC
*
69906921 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGC
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATACACATATCTCATACATATTTCACACTAGC
69906986 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
66 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
*
69907051 TATACATATCTCATACATATTTCACACTAGCCATTC
131 TACACATATCTCATACATATTTCACACTAGCCATTC
69907087 GGCTTTACCA
Statistics
Matches: 164, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
174 164 1.00
ACGTcount: A:0.31, C:0.30, G:0.06, T:0.33
Consensus pattern (174 bp):
ACATATTTCACACTAGCCATTCGGCTTTACCACATACACATATCTCATACATATTTCACACTAGC
CATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
TACACATATCTCATACATATTTCACACTAGCCATTCCATATTTC
Found at i:69916055 original size:27 final size:27
Alignment explanation
Indices: 69916020--69916074 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
69916010 TTTCTAAGGT
*
69916020 AAATGGTAGATAATATCTTAAAGACTA
1 AAATAGTAGATAATATCTTAAAGACTA
69916047 AAATAGTAGATAATATCTTAAAGACTA
1 AAATAGTAGATAATATCTTAAAGACTA
69916074 A
1 A
69916075 CCTAAATCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.51, C:0.07, G:0.13, T:0.29
Consensus pattern (27 bp):
AAATAGTAGATAATATCTTAAAGACTA
Found at i:69917376 original size:147 final size:147
Alignment explanation
Indices: 69917039--69918234 Score: 1825
Period size: 147 Copynumber: 8.1 Consensus size: 147
69917029 CAAAGTTTTC
* * *
69917039 TTTAAAAATTAATCACTATTTTGCTTAAAAATCAAAACTTTATTTTGAAATAGTTGAAAAAGATC
1 TTTAAAAA-AAATCACTATTTTTCTTAAAAATCAAAACTTTATTTCGAAATAGTTGAAAAAGATC
*
69917104 AAAACTTTATTTTAAAAATTTAAACTTTTCATTTAAAATGACTAAAAAACATATTTTTATTTTTA
65 AAAACTTTATTTTAAAAAATTAAACTTTTCATTTAAAATGACT-AAAAACATATTTTTATTTTTA
*
69917169 AAAATAAAAACTTTCTCTT
129 AAAATATAAACTTTCTCTT
* *
69917188 TTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAATTTTATTTCGAAATAGTTGAAAAATATCA
1 TTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAACTTTATTTCGAAATAGTTGAAAAAGATCA
* * * *
69917253 AAATTTTGTTTTAAAAAATTGAACTTTTCTTTTAAAATGACTAAAAACATATTTTTATTTTTAAA
66 AAACTTTATTTTAAAAAATTAAACTTTTCATTTAAAATGACTAAAAACATATTTTTATTTTTAAA
*
69917318 AATTTAAACTTTCTCTT
131 AATATAAACTTTCTCTT
*
69917335 TTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAGCTTTATTTCGAAATAGTTGAAAAAGATCA
1 TTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAACTTTATTTCGAAATAGTTGAAAAAGATCA
*
69917400 AAACTTTATTTTAAAAATTTAAACTTTTCATTTAAAATGACTAAAAAACATATTTTTATTTTTAA
66 AAACTTTATTTTAAAAAATTAAACTTTTCATTTAAAATGACT-AAAAACATATTTTTATTTTTAA
*
69917465 AAATAAAAACTTTCTCTT
130 AAATATAAACTTTCTCTT
* *
69917483 TTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAATTTTATTTCGAAATAGTTGAAAAATATCA
1 TTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAACTTTATTTCGAAATAGTTGAAAAAGATCA
* * * *
69917548 AAATTTTGTTTTAAAAAATTGAACTTTTCTTTTAAAATGACTAAAAACATATTTTTATTTTTAAA
66 AAACTTTATTTTAAAAAATTAAACTTTTCATTTAAAATGACTAAAAACATATTTTTATTTTTAAA
*
69917613 AATTTAAACTTTCTCTT
131 AATATAAACTTTCTCTT
*
69917630 TTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAGCTTTATTTCGAAATAGTTGAAAAAGATCA
1 TTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAACTTTATTTCGAAATAGTTGAAAAAGATCA
*
69917695 AAACTTTATTTTAAAAATTTAAACTTTTCATTTAAAATGACTAAAAAACATATTTTTATTTTTAA
66 AAACTTTATTTTAAAAAATTAAACTTTTCATTTAAAATGACT-AAAAACATATTTTTATTTTTAA
*
69917760 AAATAAAAACTTTCTCTT
130 AAATATAAACTTTCTCTT
* *
69917778 TTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAATTTTATTTCGAAATAGTTGAAAAATATCA
1 TTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAACTTTATTTCGAAATAGTTGAAAAAGATCA
* * * *
69917843 AAATTTTGTTTTAAAAAATTGAACTTTTCTTTTAAAATGACTAAAAACATATTTTTATTTTTAAA
66 AAACTTTATTTTAAAAAATTAAACTTTTCATTTAAAATGACTAAAAACATATTTTTATTTTTAAA
*
69917908 AATTTAAACTTTCTCTT
131 AATATAAACTTTCTCTT
*
69917925 TTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAGCTTTATTTCGAAATAGTTGAAAAAGATCA
1 TTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAACTTTATTTCGAAATAGTTGAAAAAGATCA
* ** * * * * *
69917990 AAACTTTATGTTAAAATTTTAAACATTTCCTTTAAAATGATTAAAAACAAATTTTTATATTTAAA
66 AAACTTTATTTTAAAAAATTAAACTTTTCATTTAAAATGACTAAAAACATATTTTTATTTTTAAA
* *
69918055 AATATAAAATTTCACTTTT
131 AATATAAACTTT--CTCTT
* * *
69918074 TTTAAAAAAAGTCACTATTTTTCTTAAAAATCAAAACTTTATTTCGAAATAGTTGGAAAAGATGA
1 TTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAACTTTATTTCGAAATAGTTGAAAAAGATCA
* * * * * *
69918139 AAACTTTGTTTTAGAAATTTAATCTTTTCCTTTAAAATGACTAAAAACAAATTTTTATTTTTAAA
66 AAACTTTATTTTAAAAAATTAAACTTTTCATTTAAAATGACTAAAAACATATTTTTATTTTTAAA
* * *
69918204 AATCTAAAGTTTCTATTT
131 AATATAAACTTTCT-CTT
69918222 TTTGAAAAAAAAT
1 TTT-AAAAAAAAT
69918235 TAAAACTTTT
Statistics
Matches: 957, Mismatches: 84, Indels: 12
0.91 0.08 0.01
Matches are distributed among these distances:
147 440 0.46
148 369 0.39
149 148 0.15
ACGTcount: A:0.44, C:0.09, G:0.05, T:0.42
Consensus pattern (147 bp):
TTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAACTTTATTTCGAAATAGTTGAAAAAGATCA
AAACTTTATTTTAAAAAATTAAACTTTTCATTTAAAATGACTAAAAACATATTTTTATTTTTAAA
AATATAAACTTTCTCTT
Found at i:69917579 original size:295 final size:295
Alignment explanation
Indices: 69917039--69918234 Score: 2083
Period size: 295 Copynumber: 4.0 Consensus size: 295
69917029 CAAAGTTTTC
* * * *
69917039 TTTAAAAATTAATCACTATTTTGCTTAAAAATCAAAACTTTATTTTGAAATAGTTGAAAAAGATC
1 TTTAAAAA-AAATCACTATTTTTCTTAAAAATCAAAGCTTTATTTCGAAATAGTTGAAAAAGATC
69917104 AAAACTTTATTTTAAAAATTTAAACTTTTCATTTAAAATGACTAAAAAACATATTTTTATTTTTA
65 AAAACTTTATTTTAAAAATTTAAACTTTTCATTTAAAATGACTAAAAAACATATTTTTATTTTTA
69917169 AAAATAAAAACTTTCTCTTTTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAATTTTATTTCG
130 AAAATAAAAACTTTCTCTTTTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAATTTTATTTCG
69917234 AAATAGTTGAAAAATATCAAAATTTTGTTTTAAAAAATTGAACTTTTCTTTTAAAATGACTAAAA
195 AAATAGTTGAAAAATATCAAAATTTTGTTTTAAAAAATTGAACTTTTCTTTTAAAATGACTAAAA
69917299 ACATATTTTTATTTTTAAAAATTTAAACTTTCTCTT
260 ACATATTTTTATTTTTAAAAATTTAAACTTTCTCTT
69917335 TTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAGCTTTATTTCGAAATAGTTGAAAAAGATCA
1 TTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAGCTTTATTTCGAAATAGTTGAAAAAGATCA
69917400 AAACTTTATTTTAAAAATTTAAACTTTTCATTTAAAATGACTAAAAAACATATTTTTATTTTTAA
66 AAACTTTATTTTAAAAATTTAAACTTTTCATTTAAAATGACTAAAAAACATATTTTTATTTTTAA
69917465 AAATAAAAACTTTCTCTTTTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAATTTTATTTCGA
131 AAATAAAAACTTTCTCTTTTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAATTTTATTTCGA
69917530 AATAGTTGAAAAATATCAAAATTTTGTTTTAAAAAATTGAACTTTTCTTTTAAAATGACTAAAAA
196 AATAGTTGAAAAATATCAAAATTTTGTTTTAAAAAATTGAACTTTTCTTTTAAAATGACTAAAAA
69917595 CATATTTTTATTTTTAAAAATTTAAACTTTCTCTT
261 CATATTTTTATTTTTAAAAATTTAAACTTTCTCTT
69917630 TTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAGCTTTATTTCGAAATAGTTGAAAAAGATCA
1 TTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAGCTTTATTTCGAAATAGTTGAAAAAGATCA
69917695 AAACTTTATTTTAAAAATTTAAACTTTTCATTTAAAATGACTAAAAAACATATTTTTATTTTTAA
66 AAACTTTATTTTAAAAATTTAAACTTTTCATTTAAAATGACTAAAAAACATATTTTTATTTTTAA
69917760 AAATAAAAACTTTCTCTTTTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAATTTTATTTCGA
131 AAATAAAAACTTTCTCTTTTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAATTTTATTTCGA
69917825 AATAGTTGAAAAATATCAAAATTTTGTTTTAAAAAATTGAACTTTTCTTTTAAAATGACTAAAAA
196 AATAGTTGAAAAATATCAAAATTTTGTTTTAAAAAATTGAACTTTTCTTTTAAAATGACTAAAAA
69917890 CATATTTTTATTTTTAAAAATTTAAACTTTCTCTT
261 CATATTTTTATTTTTAAAAATTTAAACTTTCTCTT
69917925 TTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAGCTTTATTTCGAAATAGTTGAAAAAGATCA
1 TTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAGCTTTATTTCGAAATAGTTGAAAAAGATCA
* * * * * * *
69917990 AAACTTTATGTTAAAATTTTAAACATTTCCTTTAAAATGA-TTAAAAACAAATTTTTATATTTAA
66 AAACTTTATTTTAAAAATTTAAACTTTTCATTTAAAATGACTAAAAAACATATTTTTATTTTTAA
* * *
69918054 AAATATAAAA-TTTCACTTTTTTTAAAAAAAGTCACTATTTTTCTTAAAAATCAAAACTTTATTT
131 AAATA-AAAACTTT--CTCTTTTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAATTTTATTT
* * * * * * *
69918118 CGAAATAGTTGGAAAAGATGAAAACTTTGTTTT-AGAAATTTAATCTTTTCCTTTAAAATGACTA
193 CGAAATAGTTGAAAAATATCAAAATTTTGTTTTAAAAAATTGAA-CTTTTCTTTTAAAATGACTA
* * * *
69918182 AAAACAAATTTTTATTTTTAAAAATCTAAAGTTTCTATTT
257 AAAACATATTTTTATTTTTAAAAATTTAAACTTTCT-CTT
69918222 TTTGAAAAAAAAT
1 TTT-AAAAAAAAT
69918235 TAAAACTTTT
Statistics
Matches: 869, Mismatches: 25, Indels: 10
0.96 0.03 0.01
Matches are distributed among these distances:
294 29 0.03
295 691 0.80
296 135 0.16
297 5 0.01
298 9 0.01
ACGTcount: A:0.44, C:0.09, G:0.05, T:0.42
Consensus pattern (295 bp):
TTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAGCTTTATTTCGAAATAGTTGAAAAAGATCA
AAACTTTATTTTAAAAATTTAAACTTTTCATTTAAAATGACTAAAAAACATATTTTTATTTTTAA
AAATAAAAACTTTCTCTTTTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAATTTTATTTCGA
AATAGTTGAAAAATATCAAAATTTTGTTTTAAAAAATTGAACTTTTCTTTTAAAATGACTAAAAA
CATATTTTTATTTTTAAAAATTTAAACTTTCTCTT
Found at i:69918652 original size:6 final size:6
Alignment explanation
Indices: 69918633--69918665 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
69918623 TAACAGACCC
*
69918633 AAAAAG AAAA-G AAAAGG AAAAGG AAAAGG AAAA
1 AAAAGG AAAAGG AAAAGG AAAAGG AAAAGG AAAA
69918666 AAGTCCTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (6 bp):
AAAAGG
Found at i:69919114 original size:42 final size:42
Alignment explanation
Indices: 69919067--69919167 Score: 123
Period size: 42 Copynumber: 2.4 Consensus size: 42
69919057 CTTCATATAC
* * *
69919067 AATGCAATTAAAAGTAAATGGACCTCTACACCT-GGGCTTCTA
1 AATGCAATAAAAAGTAAATGGACCTCCACACCTAGGTC-TCTA
* * *
69919109 AATGCAATGAAAGGTAAATGGACCTCCACATCTAGGTCTCTA
1 AATGCAATAAAAAGTAAATGGACCTCCACACCTAGGTCTCTA
*
69919151 AATACAATAAAAAGTAA
1 AATGCAATAAAAAGTAA
69919168 GCAGACCTCC
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
42 47 0.94
43 3 0.06
ACGTcount: A:0.42, C:0.19, G:0.16, T:0.24
Consensus pattern (42 bp):
AATGCAATAAAAAGTAAATGGACCTCCACACCTAGGTCTCTA
Found at i:69919670 original size:21 final size:21
Alignment explanation
Indices: 69919629--69919671 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
69919619 CTCTTTTTGG
*
69919629 TTTCTTTTTCTTTGTTGTTTT
1 TTTCTTTTTCTTCGTTGTTTT
69919650 TTTCTTTTT-TTGCGTT-TTTT
1 TTTCTTTTTCTT-CGTTGTTTT
69919670 TT
1 TT
69919672 ATTTAGGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.00, C:0.09, G:0.09, T:0.81
Consensus pattern (21 bp):
TTTCTTTTTCTTCGTTGTTTT
Found at i:69922520 original size:18 final size:18
Alignment explanation
Indices: 69922493--69922529 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
69922483 AGATAGATTG
69922493 ATAATAATAAGATAGGGA
1 ATAATAATAAGATAGGGA
*
69922511 ATAATCATAAGATAGGGA
1 ATAATAATAAGATAGGGA
69922529 A
1 A
69922530 AGAAGTGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.54, C:0.03, G:0.22, T:0.22
Consensus pattern (18 bp):
ATAATAATAAGATAGGGA
Found at i:69925341 original size:40 final size:39
Alignment explanation
Indices: 69925229--69925342 Score: 192
Period size: 39 Copynumber: 2.9 Consensus size: 39
69925219 ATTCGGATTG
69925229 ATAACCGGGCTAAGCCCGAAGGCATTCGTGCGAGTTACT
1 ATAACCGGGCTAAGCCCGAAGGCATTCGTGCGAGTTACT
69925268 ATAACCGGGCTAAGCCCGAAGGCATTCGTGCGAGTTACT
1 ATAACCGGGCTAAGCCCGAAGGCATTCGTGCGAGTTACT
* * *
69925307 ATAACCGGGCCAAGTCCCGAAGGCATTTGAGCGAGT
1 ATAACCGGGCTAAG-CCCGAAGGCATTCGTGCGAGT
69925343 AGGTATATCC
Statistics
Matches: 71, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 52 0.73
40 19 0.27
ACGTcount: A:0.26, C:0.25, G:0.29, T:0.19
Consensus pattern (39 bp):
ATAACCGGGCTAAGCCCGAAGGCATTCGTGCGAGTTACT
Found at i:69941098 original size:26 final size:26
Alignment explanation
Indices: 69941067--69941122 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
69941057 TGAAATGCCC
69941067 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
69941093 ATCATGGAACATTTATCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
69941119 ATCA
1 ATCA
69941123 ATTTGTACCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.38, C:0.23, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:69942656 original size:31 final size:30
Alignment explanation
Indices: 69942618--69942680 Score: 108
Period size: 31 Copynumber: 2.1 Consensus size: 30
69942608 CAGACATTTC
*
69942618 CCTACAAACTCCGTTACTTCTCGTTTAAGT
1 CCTACAAACTCCGTTACTTCTCATTTAAGT
69942648 NCCTACAAACTCCGTTACTTCTCATTTAAGT
1 -CCTACAAACTCCGTTACTTCTCATTTAAGT
69942679 CC
1 CC
69942681 AGGCCACCAG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 2 0.06
31 29 0.94
ACGTcount: A:0.24, C:0.32, G:0.08, T:0.35
Consensus pattern (30 bp):
CCTACAAACTCCGTTACTTCTCATTTAAGT
Found at i:69949114 original size:61 final size:61
Alignment explanation
Indices: 69949019--69949140 Score: 217
Period size: 61 Copynumber: 2.0 Consensus size: 61
69949009 ACCCCAAGGC
*
69949019 GAGAAACTCGGTCGAGCGAAACCTCTATCCGTCAATTCTTGCAACTGAGCTTTCAACTCTT
1 GAGAAACTCGGCCGAGCGAAACCTCTATCCGTCAATTCTTGCAACTGAGCTTTCAACTCTT
* *
69949080 GAGAAACTTGGCCGAGCGAAACCTCTATCCGTCAATTCTTGCAGCTGAGCTTTCAACTCTT
1 GAGAAACTCGGCCGAGCGAAACCTCTATCCGTCAATTCTTGCAACTGAGCTTTCAACTCTT
69949141 TTAACTCAGT
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
61 58 1.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (61 bp):
GAGAAACTCGGCCGAGCGAAACCTCTATCCGTCAATTCTTGCAACTGAGCTTTCAACTCTT
Found at i:69958801 original size:26 final size:26
Alignment explanation
Indices: 69958770--69958877 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
69958760 TGAAATGCCC
*
69958770 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
69958796 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
69958822 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
69958848 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
69958874 ATCA
1 ATCA
69958878 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:69961384 original size:26 final size:26
Alignment explanation
Indices: 69961344--69961393 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
69961334 ATAAGAATTC
69961344 CTTCTGAAATAAAATAGT-CACATATA
1 CTTCTGAAATAAAATA-TACACATATA
69961370 CTTCTGAGAAT-AAATATACACATA
1 CTTCTGA-AATAAAATATACACATA
69961394 GAACGCCCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 1 0.05
26 18 0.82
27 3 0.14
ACGTcount: A:0.46, C:0.16, G:0.08, T:0.30
Consensus pattern (26 bp):
CTTCTGAAATAAAATATACACATATA
Found at i:69963056 original size:31 final size:31
Alignment explanation
Indices: 69963009--69963087 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
69962999 TTTAACGATT
69963009 ACTAGGCCGAAGCCTTTTCATAAACCATGTC
1 ACTAGGCCGAAGCCTTTTCATAAACCATGTC
* * * *
69963040 ACTGGGCCAAAGCCTTTTCATAAATCATTTC
1 ACTAGGCCGAAGCCTTTTCATAAACCATGTC
69963071 ACTAGGCCGAAGCCTTT
1 ACTAGGCCGAAGCCTTT
69963088 ACTGTAAACG
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (31 bp):
ACTAGGCCGAAGCCTTTTCATAAACCATGTC
Found at i:69963158 original size:42 final size:42
Alignment explanation
Indices: 69963111--69963202 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
69963101 TGGCCCATAG
* ** *
69963111 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
69963153 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
69963195 GCCCATTT
1 GCCCATTT
69963203 AGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:69963392 original size:26 final size:26
Alignment explanation
Indices: 69963347--69963496 Score: 230
Period size: 26 Copynumber: 5.8 Consensus size: 26
69963337 CCTCTTTAAT
69963347 AACTGGGGCA-AAGCCCTTTTCAGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
69963372 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
* *
69963398 AACTAGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
69963424 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
**
69963450 AACTGGGGCATAAGCCCTTTTTGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
69963476 AACTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
69963497 GCACTTCTTC
Statistics
Matches: 113, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
25 10 0.09
26 103 0.91
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAGTA
Found at i:69963425 original size:52 final size:52
Alignment explanation
Indices: 69963347--69963496 Score: 257
Period size: 52 Copynumber: 2.9 Consensus size: 52
69963337 CCTCTTTAAT
*
69963347 AACTGGGGCA-AAGCCCTTTTCAGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
*
69963398 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
* *
69963450 AACTGGGGCATAAGCCCTTTTTGGTAAACTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
69963497 GCACTTCTTC
Statistics
Matches: 93, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
51 9 0.10
52 84 0.90
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (52 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:69963452 original size:78 final size:77
Alignment explanation
Indices: 69963347--69963496 Score: 255
Period size: 78 Copynumber: 1.9 Consensus size: 77
69963337 CCTCTTTAAT
*
69963347 AACTGGGGCAAAGCCCTTTTCAGTAAACTGGGGCATAAGCCCTTTTCAATAAACTAGGGCATAAG
1 AACTGGGGCAAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATAAACTAGGGCATAAG
69963412 CCCTTTTCGGTA
66 CCCTTTTCGGTA
***
69963424 AACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTTGGTAAACTAGGGCATAA
1 AACTGGGGCA-AAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATAAACTAGGGCATAA
69963489 GCCCTTTT
65 GCCCTTTT
69963497 GCACTTCTTC
Statistics
Matches: 68, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
77 10 0.15
78 58 0.85
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (77 bp):
AACTGGGGCAAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATAAACTAGGGCATAAG
CCCTTTTCGGTA
Found at i:69964389 original size:27 final size:27
Alignment explanation
Indices: 69964299--69964381 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
69964289 GGGCATATTT
* *
69964299 GTCATTTTACCATACAA-GG-TATTACG
1 GTCACTTTACCCTACAAGGGCT-TTACG
69964325 GTCACTTTACCCTACAAGGGCTTTACG
1 GTCACTTTACCCTACAAGGGCTTTACG
69964352 GTCACTTTACCCTACAAGGGCTTTACG
1 GTCACTTTACCCTACAAGGGCTTTACG
69964379 GTC
1 GTC
69964382 TTTTTACCTA
Statistics
Matches: 53, Mismatches: 2, Indels: 3
0.91 0.03 0.05
Matches are distributed among these distances:
26 15 0.28
27 37 0.70
28 1 0.02
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAAGGGCTTTACG
Found at i:69964548 original size:56 final size:54
Alignment explanation
Indices: 69964440--69964576 Score: 143
Period size: 56 Copynumber: 2.5 Consensus size: 54
69964430 TTGGTAAATC
* *
69964440 TACAAACCAAGGGTATTT-TAGTAATTTTGTAAACTAATGGTATTTCTATAATTTT
1 TACAAATCAAGGGTATTTCT-GTAATTTTGTAAACTAAGGGTATTTCTATAA-TTT
* * * *
69964495 TAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATTAGGGGTATTT-TGGTAATTT
1 TACAAA-TCAAGGGTATTTCTGTAATTTTGTAAACTAAGGGTATTTCT-ATAATTT
** *
69964550 TACAAATTGAGGGTATTTCAGTAATTT
1 TACAAATCAAGGGTATTTCTGTAATTT
69964577 CACAAACCGA
Statistics
Matches: 69, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
54 18 0.26
55 14 0.20
56 36 0.52
57 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.43
Consensus pattern (54 bp):
TACAAATCAAGGGTATTTCTGTAATTTTGTAAACTAAGGGTATTTCTATAATTT
Found at i:69964672 original size:27 final size:27
Alignment explanation
Indices: 69964421--69964658 Score: 183
Period size: 27 Copynumber: 8.7 Consensus size: 27
69964411 TTCATCCTAC
* * * * *
69964421 AAGGGTGTTTTGGTAAATCTACAAACC
1 AAGGGTATTTTAGTAATTTTACAAACT
**
69964448 AAGGGTATTTTAGTAATTTTGTAAACT
1 AAGGGTATTTTAGTAATTTTACAAACT
* * *
69964475 AATGGTATTTCTA-TAATTTTTAGAAAGT
1 AAGGGTATTT-TAGTAA-TTTTACAAACT
** *
69964503 CAAGGGTATTTCT-GTAATTTTGTAAATT
1 -AAGGGTATTT-TAGTAATTTTACAAACT
* * *
69964531 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTAGTAATTTTACAAACT
* * * *
69964558 GAGGGTATTTCAGTAATTTCACAAACC
1 AAGGGTATTTTAGTAATTTTACAAACT
* * * *
69964585 GATGGTATTTTGGTAGTTTTACAAACT
1 AAGGGTATTTTAGTAATTTTACAAACT
* * *
69964612 AGGGGTATTTTGGTAATTTTACAAACC
1 AAGGGTATTTTAGTAATTTTACAAACT
69964639 AAGGGTATTTTAGTAATTTT
1 AAGGGTATTTTAGTAATTTT
69964659 GTAAATTGAG
Statistics
Matches: 168, Mismatches: 38, Indels: 10
0.78 0.18 0.05
Matches are distributed among these distances:
26 1 0.01
27 135 0.80
28 18 0.11
29 14 0.08
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
AAGGGTATTTTAGTAATTTTACAAACT
Found at i:69964679 original size:27 final size:27
Alignment explanation
Indices: 69964651--69964834 Score: 233
Period size: 27 Copynumber: 6.8 Consensus size: 27
69964641 GGGTATTTTA
* * **
69964651 GTAATTTTGTAAATTGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
69964678 GTAATTCTATAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
69964705 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
69964732 GTAATTCTATAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
69964759 GTAATTATGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
69964786 GTAATTATGTAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
69964813 GTAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTA
69964835 CTTTGATAAT
Statistics
Matches: 140, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 140 1.00
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:69964709 original size:81 final size:81
Alignment explanation
Indices: 69964624--69964783 Score: 176
Period size: 81 Copynumber: 2.0 Consensus size: 81
69964614 GGGTATTTTG
* **** * * * *
69964624 GTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATTGAGGGTAAAATAGTAATTCTATA
1 GTAATTCTACAAACCAAGGGTAAAACAGTAATTCTATAAATTGAGGGTAAAACAGTAATTATATA
69964689 AATCAAGGGTAAAACA
66 AATCAAGGGTAAAACA
* * * * * *
69964705 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAACGGTAATTATGTA
1 GTAATTCTACAAACCAAGGGTAAAACAGTAATTCTATAAATTGAGGGTAAAACAGTAATTATATA
*
69964770 AATCGAGGGTAAAA
66 AATCAAGGGTAAAA
69964784 TGGTAATTAT
Statistics
Matches: 63, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
81 63 1.00
ACGTcount: A:0.42, C:0.07, G:0.20, T:0.31
Consensus pattern (81 bp):
GTAATTCTACAAACCAAGGGTAAAACAGTAATTCTATAAATTGAGGGTAAAACAGTAATTATATA
AATCAAGGGTAAAACA
Found at i:69964912 original size:26 final size:27
Alignment explanation
Indices: 69964841--69964929 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
69964831 GGTACTTTGA
*
69964841 TAATTTTACAAGTCGAAGGTATTTCAG
1 TAATTTTACAAATCGAAGGTATTTCAG
*
69964868 TAATTTTACAAATCGAAGGTATTTTAG
1 TAATTTTACAAATCGAAGGTATTTCAG
* * * *
69964895 TATTTTTACAAA-CTAAGGGCATTTCGG
1 TAATTTTACAAATCGAA-GGTATTTCAG
69964922 TAATTTTA
1 TAATTTTA
69964930 GTAAACTAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
26 3 0.06
27 50 0.94
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.40
Consensus pattern (27 bp):
TAATTTTACAAATCGAAGGTATTTCAG
Found at i:69967184 original size:31 final size:31
Alignment explanation
Indices: 69967137--69967215 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
69967127 TTTAACGATT
*
69967137 ACTGGGCCGAAGCCTTTTCATAAACCATATC
1 ACTGGGCCAAAGCCTTTTCATAAACCATATC
* * *
69967168 ACTGTGCCAAAGCCTTTTCATAAATCATTTC
1 ACTGGGCCAAAGCCTTTTCATAAACCATATC
69967199 ACTGGGCCAAAGCCTTT
1 ACTGGGCCAAAGCCTTT
69967216 ACTGTAAACG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (31 bp):
ACTGGGCCAAAGCCTTTTCATAAACCATATC
Found at i:69967286 original size:42 final size:42
Alignment explanation
Indices: 69967239--69967330 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
69967229 TGGCCCATAG
* ** *
69967239 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
69967281 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
69967323 GCCCATTT
1 GCCCATTT
69967331 AGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:69967520 original size:26 final size:26
Alignment explanation
Indices: 69967475--69967627 Score: 200
Period size: 26 Copynumber: 5.8 Consensus size: 26
69967465 CCTCTTTAAT
*
69967475 AACTAGGGCA-AAGCCCTTTTCAGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
* *
69967500 AACTAGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
69967526 AACTGGGGCATATTATGCCCTTTTCGGTA
1 AACTGGGGCATA--A-GCCCTTTTCAGTA
*
69967555 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
69967581 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
* *
69967607 AACTGAGGAATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
69967628 TCACTTCTTC
Statistics
Matches: 114, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
25 10 0.09
26 79 0.69
27 1 0.01
28 1 0.01
29 23 0.20
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAGTA
Found at i:69967556 original size:55 final size:51
Alignment explanation
Indices: 69967475--69967627 Score: 218
Period size: 55 Copynumber: 2.9 Consensus size: 51
69967465 CCTCTTTAAT
* *
69967475 AACTAGGGCA-AAGCCCTTTTCAGTAAACTAGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACT-GGGCATAAGCCCTTTTCAATA
69967526 AACTGGGGCATATTATGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATA--A-GCCCTTTTCGGTAAACT-GGGCATAAGCCCTTTTCAATA
*
69967581 AACTGGGGCATAAGCCCTTTTCGGTAAACTGAGGAATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTG-GGCATAAGCCCTTTT
69967628 TCACTTCTTC
Statistics
Matches: 93, Mismatches: 4, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
51 10 0.11
52 32 0.34
53 1 0.01
54 1 0.01
55 49 0.53
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (51 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGCATAAGCCCTTTTCAATA
Found at i:69968465 original size:27 final size:26
Alignment explanation
Indices: 69968430--69968510 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 26
69968420 GGGCATATTC
* * *
69968430 GTCATTTTACCATACAGGGGTATTACG
1 GTCACTTTACCCTACAGGGCT-TTACG
69968457 GTCACTTTACCCTACAAGGGCTTTACG
1 GTCACTTTACCCTAC-AGGGCTTTACG
69968484 GTCACTTTACCCTACAAGGGCTTTACG
1 GTCACTTTACCCTAC-AGGGCTTTACG
69968511 ATTTTTTTAC
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
27 45 0.90
28 5 0.10
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (26 bp):
GTCACTTTACCCTACAGGGCTTTACG
Found at i:69968605 original size:27 final size:27
Alignment explanation
Indices: 69968553--69968790 Score: 172
Period size: 27 Copynumber: 8.7 Consensus size: 27
69968543 TTCATCCTAC
* * * *
69968553 AAGGGTGTTTTGGTAAATATACAAACT
1 AAGGGTATTTCGGTAATTTTACAAACT
* **
69968580 AAGGGTATTTCAGTAATTTTGTAAACT
1 AAGGGTATTTCGGTAATTTTACAAACT
* ** * *
69968607 AATGGTATTTCTATAATTTTTAGAAAGT
1 AAGGGTATTTCGGTAA-TTTTACAAACT
* ** *
69968635 CAAGGGTATTTCTGG-AACTTTGTAAATT
1 -AAGGGTATTTC-GGTAATTTTACAAACT
* * *
69968663 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTCGGTAATTTTACAAACT
* * * *
69968690 GAGGGTATTTCGGCAATTTCACAAACC
1 AAGGGTATTTCGGTAATTTTACAAACT
* *
69968717 AATGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTCGGTAATTTTACAAACT
* * *
69968744 AAGGGTATTTTGGTAACTTTACAAACC
1 AAGGGTATTTCGGTAATTTTACAAACT
**
69968771 AAGGGTATTTTAGTAATTTT
1 AAGGGTATTTCGGTAATTTT
69968791 GTAAATCGAG
Statistics
Matches: 164, Mismatches: 43, Indels: 8
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.01
27 135 0.82
28 15 0.09
29 12 0.07
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.39
Consensus pattern (27 bp):
AAGGGTATTTCGGTAATTTTACAAACT
Found at i:69968989 original size:27 final size:27
Alignment explanation
Indices: 69968782--69968987 Score: 250
Period size: 27 Copynumber: 7.6 Consensus size: 27
69968772 AGGGTATTTT
* **
69968782 AGTAATTTTGTAAATCGAGGGTAAAGT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
69968809 AGTAATTCTATAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
69968836 AATAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
69968863 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
69968890 AGCAATTCTGTAAGTCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
69968917 AGTAATTATGTAAATCGGGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
69968944 GGTAATTATGTAAATCGGGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
69968971 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
69968988 GGCTCACCTA
Statistics
Matches: 158, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 158 1.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:69973866 original size:39 final size:40
Alignment explanation
Indices: 69973821--69973988 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
69973811 CGGGGTTTAG
* * *
69973821 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
69973860 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
69973900 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
69973940 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
69973981 CCGGATAT
1 CCGGATAT
69973989 CATTTGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:69973971 original size:41 final size:40
Alignment explanation
Indices: 69973844--69973988 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
69973834 CTCGCACAAG
* * * * *
69973844 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
69973884 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
69973924 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
69973965 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
69973989 CATTTGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:69979867 original size:46 final size:46
Alignment explanation
Indices: 69979800--69979891 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
69979790 CGACTACACT
69979800 GACCTTCATGCATTACGATTTGGATATCTCCCTGCACAGAGCTTCA
1 GACCTTCATGCATTACGATTTGGATATCTCCCTGCACAGAGCTTCA
69979846 GACCTTCATGCATTACGATTTGGATATCTCCCTGCACAGAGCTTCA
1 GACCTTCATGCATTACGATTTGGATATCTCCCTGCACAGAGCTTCA
69979892 ATACTGATGC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.30
Consensus pattern (46 bp):
GACCTTCATGCATTACGATTTGGATATCTCCCTGCACAGAGCTTCA
Found at i:69980972 original size:39 final size:40
Alignment explanation
Indices: 69980927--69981864 Score: 233
Period size: 41 Copynumber: 23.2 Consensus size: 40
69980917 CGGGGTTTAG
* * *
69980927 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
69980966 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
69981006 CCGGATATAGTCGCTAGCACAAACGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
69981046 CCGGATGTAGTCGCGTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
69981087 CCGGATATAGTCGCTAGCACAAACGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
69981127 CCGGATGTAGTCGCGTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
69981168 CCGGATATAGTCGCTAGCACAAACGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
69981208 CCGGATGTAGTCGCGTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
69981249 CCGGATATAGTCGCTAGCACAAACGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
69981289 CCGGATGTAGTCGCGTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
69981330 CCGGATATAGTCGCTAGCACAAACGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
69981370 CCGGATGTAGTCGCGTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
69981411 CCGGATATAGTCGCTAGCACAAACGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
69981451 CCGGATGTAGTCGCGTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
69981492 CCGGATATAGTCGCTAGCACAAACGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
69981532 CCGGATGTAGTCGCGTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
69981573 CCGGATATAGTCGCTAGCACAAACGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
69981613 CCGGATGTAGTCGCGTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
69981654 CCGGATATAGTCGCTAGCACAAACGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * *
69981694 CCGGATGTAGTCGCGTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
69981735 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
69981775 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
** * * * *
69981816 CCGGATATAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
69981857 CCGGATAT
1 CCGGATAT
69981865 CATTCGAGTA
Statistics
Matches: 796, Mismatches: 72, Indels: 60
0.86 0.08 0.06
Matches are distributed among these distances:
39 45 0.06
40 357 0.45
41 364 0.46
42 30 0.04
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:69981084 original size:81 final size:81
Alignment explanation
Indices: 69980980--69981862 Score: 1669
Period size: 81 Copynumber: 10.9 Consensus size: 81
69980970 ATATGGTCAC
* *
69980980 TAGCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAACGCCTTCGGATCTTAG
1 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAACGCCTTCGGATCTTAG
69981045 TCCGGATGTAGTCGCG
66 TCCGGATGTAGTCGCG
69981061 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAACGCCTTCGGATCTTAG
1 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAACGCCTTCGGATCTTAG
69981126 TCCGGATGTAGTCGCG
66 TCCGGATGTAGTCGCG
69981142 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAACGCCTTCGGATCTTAG
1 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAACGCCTTCGGATCTTAG
69981207 TCCGGATGTAGTCGCG
66 TCCGGATGTAGTCGCG
69981223 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAACGCCTTCGGATCTTAG
1 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAACGCCTTCGGATCTTAG
69981288 TCCGGATGTAGTCGCG
66 TCCGGATGTAGTCGCG
69981304 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAACGCCTTCGGATCTTAG
1 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAACGCCTTCGGATCTTAG
69981369 TCCGGATGTAGTCGCG
66 TCCGGATGTAGTCGCG
69981385 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAACGCCTTCGGATCTTAG
1 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAACGCCTTCGGATCTTAG
69981450 TCCGGATGTAGTCGCG
66 TCCGGATGTAGTCGCG
69981466 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAACGCCTTCGGATCTTAG
1 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAACGCCTTCGGATCTTAG
69981531 TCCGGATGTAGTCGCG
66 TCCGGATGTAGTCGCG
69981547 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAACGCCTTCGGATCTTAG
1 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAACGCCTTCGGATCTTAG
69981612 TCCGGATGTAGTCGCG
66 TCCGGATGTAGTCGCG
69981628 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAACGCCTTCGGATCTTAG
1 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAACGCCTTCGGATCTTAG
69981693 TCCGGATGTAGTCGCG
66 TCCGGATGTAGTCGCG
* * *
69981709 TAGCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGATCTTAG
1 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAACGCCTTCGGATCTTAG
*
69981774 TCCGGATGTAGTCGCT
66 TCCGGATGTAGTCGCG
*
69981790 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGCCTTCGGGA-CTT
1 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGC-TAGCACAAACGCCTTC-GGATCTT
*
69981854 AGCCCGGAT
64 AGTCCGGAT
69981863 ATCATTCGAG
Statistics
Matches: 790, Mismatches: 10, Indels: 3
0.98 0.01 0.00
Matches are distributed among these distances:
81 761 0.96
82 26 0.03
83 3 0.00
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.23
Consensus pattern (81 bp):
TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAACGCCTTCGGATCTTAG
TCCGGATGTAGTCGCG
Found at i:69982145 original size:54 final size:54
Alignment explanation
Indices: 69982078--69982184 Score: 196
Period size: 54 Copynumber: 2.0 Consensus size: 54
69982068 GTTGTCGAAC
*
69982078 GATTCTGATGGCTATTCGACCACTTCTTCCTTCCCTTTATCGGATTTAGTTCCT
1 GATTCCGATGGCTATTCGACCACTTCTTCCTTCCCTTTATCGGATTTAGTTCCT
*
69982132 GATTCCGATGGCTATTCGACCACTTTTTCCTTCCCTTTATCGGATTTAGTTCC
1 GATTCCGATGGCTATTCGACCACTTCTTCCTTCCCTTTATCGGATTTAGTTCC
69982185 CCTTTGCTCT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.15, C:0.28, G:0.15, T:0.42
Consensus pattern (54 bp):
GATTCCGATGGCTATTCGACCACTTCTTCCTTCCCTTTATCGGATTTAGTTCCT
Found at i:69983545 original size:116 final size:116
Alignment explanation
Indices: 69983396--69983626 Score: 426
Period size: 116 Copynumber: 2.0 Consensus size: 116
69983386 CATGTTTCCA
69983396 CTCATAGCATGGCCAACCACTACTAATTAGGGGGGGAAATGTGACATGCAAGTCCTCCCTTTTTA
1 CTCATAGCATGGCCAACCACTACTAATTAGGGGGGGAAATGTGACATGCAAGTCCTCCCTTTTTA
69983461 TTACATGCACTATTAGATCCTTATAGATTAGCCTATCACATTTCAAAAGTT
66 TTACATGCACTATTAGATCCTTATAGATTAGCCTATCACATTTCAAAAGTT
** *
69983512 CTCATAGCATGGCCGGCCACTACTAATTAGGGGGGGAAATTTGACATGCAAGTCCTCCCTTTTTA
1 CTCATAGCATGGCCAACCACTACTAATTAGGGGGGGAAATGTGACATGCAAGTCCTCCCTTTTTA
*
69983577 TTACATGCATTATTAGATCCTTATAGATTAGCCTATCACATTTCAAAAGT
66 TTACATGCACTATTAGATCCTTATAGATTAGCCTATCACATTTCAAAAGT
69983627 GTCACACAAA
Statistics
Matches: 111, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
116 111 1.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (116 bp):
CTCATAGCATGGCCAACCACTACTAATTAGGGGGGGAAATGTGACATGCAAGTCCTCCCTTTTTA
TTACATGCACTATTAGATCCTTATAGATTAGCCTATCACATTTCAAAAGTT
Found at i:69986978 original size:50 final size:50
Alignment explanation
Indices: 69986847--69987088 Score: 247
Period size: 50 Copynumber: 4.8 Consensus size: 50
69986837 AGCCGAAGCT
* * * * * *
69986847 ATCTGATACGCATAGTAGCCTGCACTTAGTACTACATATGCGACC-AACA
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * * *
69986896 ATCCGGTAAACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * *
69986946 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CC
* * *** *
69986997 AT-TGAGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACTTAA-C
1 ATCTGA-TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* *
69987046 AGTATGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTG
1 A-TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTG
69987089 TACTCACAAT
Statistics
Matches: 157, Mismatches: 31, Indels: 9
0.80 0.16 0.05
Matches are distributed among these distances:
49 39 0.25
50 79 0.50
51 39 0.25
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (50 bp):
ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
Found at i:69988774 original size:15 final size:15
Alignment explanation
Indices: 69988750--69988780 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
69988740 AATTATTTTA
69988750 TTACAAAATTTCACT
1 TTACAAAATTTCACT
*
69988765 TTACATAATTTCACT
1 TTACAAAATTTCACT
69988780 T
1 T
69988781 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.45
Consensus pattern (15 bp):
TTACAAAATTTCACT
Found at i:69989072 original size:50 final size:50
Alignment explanation
Indices: 69988991--69989324 Score: 271
Period size: 50 Copynumber: 6.6 Consensus size: 50
69988981 CTAGTACGCA
* * * *
69988991 TAGTAGCCTGCACTAAGTACTACACAAGTGACCTATCAATCTGGTACATG
1 TAGTAGCCTACACTTAGTACTACACACGTGACCTATCAATCTGGTACACG
* * * * * *
69989041 TAGTATCCTACACTTAGTACTACACGCGTGACTTAACCATCTGATACACG
1 TAGTAGCCTACACTTAGTACTACACACGTGACCTATCAATCTGGTACACG
* * ** * * *
69989091 TAGCAGCCTACACTTAGTACTGCACACGTGATCGAAGTTAA-C-GGCTACGCA
1 TAGTAGCCTACACTTAGTACTACACACGTGA-CCTA-TCAATCTGG-TACACG
* * * * * * *
69989142 TAGTATCCTGCACTTAGTACTACACACATGACTTAACCATCTGATACACG
1 TAGTAGCCTACACTTAGTACTACACACGTGACCTATCAATCTGGTACACG
** * ** *
69989192 TAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTAA-C-GGATATGCA
1 TAGTAGCCTACACTTAGTACTACACACGTGA-CCTA-TCAATCTGG-TACACG
* * * * *
69989243 TAGTAGCTTGCACTTAGTACTACACATGCGGCCTATCAATCTGGTACACG
1 TAGTAGCCTACACTTAGTACTACACACGTGACCTATCAATCTGGTACACG
69989293 TAGTAGCCTACACTTAGTACTACACACGTGAC
1 TAGTAGCCTACACTTAGTACTACACACGTGAC
69989325 TCACAACGGA
Statistics
Matches: 211, Mismatches: 63, Indels: 20
0.72 0.21 0.07
Matches are distributed among these distances:
49 4 0.02
50 137 0.65
51 68 0.32
52 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTACACTTAGTACTACACACGTGACCTATCAATCTGGTACACG
Found at i:69989161 original size:51 final size:51
Alignment explanation
Indices: 69989095--69989268 Score: 190
Period size: 51 Copynumber: 3.4 Consensus size: 51
69989085 TACACGTAGC
* * *
69989095 AGCCTACACTTAGTACTGCACACGTGATCGAAGTTAACGGCTACGCATAGT
1 AGCCTGCACTTAGTACTACACACGTGATCGAAGTTAACGGATACGCATAGT
* * * ** * * * *
69989146 ATCCTGCACTTAGTACTACACACATGA-CTTAA-CCATCTGATACACGTAGT
1 AGCCTGCACTTAGTACTACACACGTGATC-GAAGTTAACGGATACGCATAGT
* *
69989196 AGCCTACACTTAGTACTACACACGTGATCGAAGTTAACGGATATGCATAGT
1 AGCCTGCACTTAGTACTACACACGTGATCGAAGTTAACGGATACGCATAGT
*
69989247 AGCTTGCACTTAGTACTACACA
1 AGCCTGCACTTAGTACTACACA
69989269 TGCGGCCTAT
Statistics
Matches: 95, Mismatches: 25, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
50 38 0.40
51 57 0.60
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (51 bp):
AGCCTGCACTTAGTACTACACACGTGATCGAAGTTAACGGATACGCATAGT
Found at i:69989174 original size:101 final size:101
Alignment explanation
Indices: 69989041--69989323 Score: 422
Period size: 101 Copynumber: 2.8 Consensus size: 101
69989031 CTGGTACATG
* * *
69989041 TAGTATCCTACACTTAGTACTACACGCGTGACTTAACCATCTGATACACGTAGCAGCCTACACTT
1 TAGTATCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTT
* *
69989106 AGTACTGCACACGTGATCGAAGTTAACGGCTACGCA
66 AGTACTACACACGTGATCGAAGTTAACGGATACGCA
*
69989142 TAGTATCCTGCACTTAGTACTACACACATGACTTAACCATCTGATACACGTAGTAGCCTACACTT
1 TAGTATCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTT
*
69989207 AGTACTACACACGTGATCGAAGTTAACGGATATGCA
66 AGTACTACACACGTGATCGAAGTTAACGGATACGCA
* * * * * * * * *
69989243 TAGTAGCTTGCACTTAGTACTACACATGCGGCCTATCAATCTGGTACACGTAGTAGCCTACACTT
1 TAGTATCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTT
69989308 AGTACTACACACGTGA
66 AGTACTACACACGTGA
69989324 CTCACAACGG
Statistics
Matches: 165, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
101 165 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (101 bp):
TAGTATCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTT
AGTACTACACACGTGATCGAAGTTAACGGATACGCA
Found at i:69996938 original size:56 final size:55
Alignment explanation
Indices: 69996801--69997015 Score: 213
Period size: 54 Copynumber: 3.9 Consensus size: 55
69996791 TTACTCGAGA
* * * * * * * * * *
69996801 ACCTTTTCCTTTTTGAACTTACCATTTCCATGTCTTGACATGGTCTTACGT-GAT
1 ACCTTTGCCTTATAGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGAG
*
69996855 ATCC-TTGCCTTAT-GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGG
1 A-CCTTTGCCTTATAGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGAG
* * *
69996909 ACCTTTGCCTTATAGTAACTCACCAATGCCATGTCTTGACATGGTCTTACAT-GAT
1 ACCTTTGCCTTATAG-AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGAG
** * * *
69996964 TTCTTTTCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATG
1 ACCTTTGCCTTATAGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATG
69997016 ATATCCTTAT
Statistics
Matches: 134, Mismatches: 21, Indels: 11
0.81 0.13 0.07
Matches are distributed among these distances:
53 33 0.25
54 51 0.38
55 16 0.12
56 34 0.25
ACGTcount: A:0.21, C:0.25, G:0.16, T:0.37
Consensus pattern (55 bp):
ACCTTTGCCTTATAGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGAG
Found at i:69997006 original size:54 final size:54
Alignment explanation
Indices: 69996828--69997020 Score: 244
Period size: 54 Copynumber: 3.6 Consensus size: 54
69996818 CTTACCATTT
* * *
69996828 CCATGTCTTGACATGGTCTTACGTGATATCCTTGCCTTAT-GAACTCACCAATG
1 CCATGCCTTGACATGGTCTTACATGATATCTTTGCCTTATAGAACTCACCAATG
* ** *
69996881 CCATGCCTTGGCATGGTCTTACATGGGGACCTTTGCCTTATAGTAACTCACCAATG
1 CCATGCCTTGACATGGTCTTACAT-GATATCTTTGCCTTATAG-AACTCACCAATG
* * * * *
69996937 CCATGTCTTGACATGGTCTTACATGATTTCTTTTCCTTATAGAACTTATCAATG
1 CCATGCCTTGACATGGTCTTACATGATATCTTTGCCTTATAGAACTCACCAATG
*
69996991 CCATGCCTTGGCATGGTCTTACATGATATC
1 CCATGCCTTGACATGGTCTTACATGATATC
69997021 CTTATCTTAC
Statistics
Matches: 118, Mismatches: 19, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
53 21 0.18
54 49 0.42
55 14 0.12
56 34 0.29
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (54 bp):
CCATGCCTTGACATGGTCTTACATGATATCTTTGCCTTATAGAACTCACCAATG
Found at i:69997062 original size:101 final size:100
Alignment explanation
Indices: 69996838--69997272 Score: 323
Period size: 101 Copynumber: 4.3 Consensus size: 100
69996828 CCATGTCTTG
* * * *
69996838 ACATGGTCTTACGTGATATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTAC
1 ACATGGTCTTACATGATATCCTTGCCTTATGAACTTATCAATGCCATGCCTTGACATGGTCTTAC
* * * ***
69996903 ATGGGGACCTTTGCCTTATAGTAACTCACCAATGCCATGTCTTG
66 AT--GGA--TAT-CCTTAT-CTTACT-A--AATGCCATGTCCAA
* * * *
69996947 ACATGGTCTTACATGATTTCTTTTCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGATATCCTTGCCTTAT-GAACTTATCAATGCCATGCCTTGACATGGTCTTA
69997012 CAT-GATATCCTTATCTTACTAAATGCCATGTTCCAA
65 CATGGATATCCTTATCTTACTAAATGCCATG-TCCAA
* * * *** **
69997048 ACATGGTCTTACATGGTATCATTGTCTTAGTG--C----CAATGCCACATCTTGATGTGGTCTTA
1 ACATGGTCTTACATGATATCCTTGCCTTA-TGAACTTATCAATGCCATGCCTTGACATGGTCTTA
* * * ** ***
69997107 CATGGA-CTCCTTAATCAATGC-CGATGCCATGTCTTG
65 CATGGATATCCTT-ATC-TTACTAAATGCCATGTCCAA
* * * *
69997143 ACATGGTCTTCCATGATTTCCTTGCCTTATAGAACTTGTCAATGCCATGTCTTGACATGGTCTTA
1 ACATGGTCTTACATGATATCCTTGCCTTAT-GAACTTATCAATGCCATGCCTTGACATGGTCTTA
*
69997208 CATGG-TATCCTTATCTTACCAAATGCCATGTTCCAA
65 CATGGATATCCTTATCTTACTAAATGCCATG-TCCAA
* *
69997244 ACATGGTCTTACATGGTATCCTTGTCTTA
1 ACATGGTCTTACATGATATCCTTGCCTTA
69997273 CCAAATGTCA
Statistics
Matches: 258, Mismatches: 52, Indels: 40
0.74 0.15 0.11
Matches are distributed among these distances:
94 1 0.00
95 55 0.21
96 13 0.05
97 3 0.01
99 3 0.01
100 20 0.08
101 86 0.33
102 2 0.01
103 4 0.02
104 6 0.02
105 2 0.01
107 2 0.01
109 26 0.10
110 35 0.14
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (100 bp):
ACATGGTCTTACATGATATCCTTGCCTTATGAACTTATCAATGCCATGCCTTGACATGGTCTTAC
ATGGATATCCTTATCTTACTAAATGCCATGTCCAA
Found at i:69997253 original size:47 final size:47
Alignment explanation
Indices: 69997197--69997300 Score: 190
Period size: 47 Copynumber: 2.2 Consensus size: 47
69997187 CCATGTCTTG
69997197 ACATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAA
1 ACATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAA
* *
69997244 ACATGGTCTTACATGGTATCCTTGTCTTACCAAATGTCATGTTCCAA
1 ACATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAA
69997291 ACATGGTCTT
1 ACATGGTCTT
69997301 TTTTTAGTCA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 55 1.00
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (47 bp):
ACATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAA
Found at i:69998302 original size:79 final size:79
Alignment explanation
Indices: 69998171--69998331 Score: 322
Period size: 79 Copynumber: 2.0 Consensus size: 79
69998161 AAACACATTT
69998171 AAACTATGGATATTTTTCCAAATATGAACCCTAGCATGAATTATTGCTAGAATCAGCTAAATCAA
1 AAACTATGGATATTTTTCCAAATATGAACCCTAGCATGAATTATTGCTAGAATCAGCTAAATCAA
69998236 GTTACCAGGACTCA
66 GTTACCAGGACTCA
69998250 AAACTATGGATATTTTTCCAAATATGAACCCTAGCATGAATTATTGCTAGAATCAGCTAAATCAA
1 AAACTATGGATATTTTTCCAAATATGAACCCTAGCATGAATTATTGCTAGAATCAGCTAAATCAA
69998315 GTTACCAGGACTCA
66 GTTACCAGGACTCA
69998329 AAA
1 AAA
69998332 AACGTAAAGA
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 82 1.00
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.29
Consensus pattern (79 bp):
AAACTATGGATATTTTTCCAAATATGAACCCTAGCATGAATTATTGCTAGAATCAGCTAAATCAA
GTTACCAGGACTCA
Found at i:70008108 original size:42 final size:42
Alignment explanation
Indices: 70008020--70008110 Score: 98
Period size: 42 Copynumber: 2.2 Consensus size: 42
70008010 TCATTTACTT
* * **
70008020 GATGCCATAGTCCAACTATGGTCTTACACAAAGTCTCGTATG
1 GATGCCATAGTCCAACTATGGTCTTACACAAAGTCACATAAC
70008062 GATGCCAT-GTCCCAGAC-ATGGTCTTACACGAAA-TCACATAAC
1 GATGCCATAGT-CCA-ACTATGGTCTTACAC-AAAGTCACATAAC
70008104 GATGCCA
1 GATGCCA
70008111 AGGCCATTTC
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
41 2 0.05
42 35 0.83
43 5 0.12
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (42 bp):
GATGCCATAGTCCAACTATGGTCTTACACAAAGTCACATAAC
Found at i:70008186 original size:48 final size:48
Alignment explanation
Indices: 70008063--70008193 Score: 190
Period size: 48 Copynumber: 2.7 Consensus size: 48
70008053 TCTCGTATGG
* **
70008063 ATGCCATGTCCCAGACATGGTCTTACACGAAATCACATAACGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAACGATGCCA
* * * *
70008111 AGGCCATTTCCCAGATATGGTCTTACATGGGATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAACGATGCCA
*
70008159 ATGCCATGTCCTAGACATGGTCTTACATGGGATCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCA
70008194 TAATGCCATA
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 72 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAACGATGCCA
Found at i:70008219 original size:37 final size:37
Alignment explanation
Indices: 70008175--70008259 Score: 107
Period size: 37 Copynumber: 2.3 Consensus size: 37
70008165 TGTCCTAGAC
* *
70008175 ATGGTCTTACATGGGATCATAATGCCATAGCCCAGCT
1 ATGGTCTTACATGGCATCACAATGCCATAGCCCAGCT
* * * * *
70008212 ATTGTCTTTCATGTCATTACGATGCCATAGCCCAGCT
1 ATGGTCTTACATGGCATCACAATGCCATAGCCCAGCT
70008249 ATGGTCTTACA
1 ATGGTCTTACA
70008260 CGTACTCACA
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.32
Consensus pattern (37 bp):
ATGGTCTTACATGGCATCACAATGCCATAGCCCAGCT
Found at i:70011112 original size:18 final size:18
Alignment explanation
Indices: 70011072--70011106 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
70011062 CTACTCACAT
70011072 AAGCTGACAGTCAGGACA
1 AAGCTGACAGTCAGGACA
70011090 AAGCTGACAGTCAGGAC
1 AAGCTGACAGTCAGGAC
70011107 TTAGCTACAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.37, C:0.23, G:0.29, T:0.11
Consensus pattern (18 bp):
AAGCTGACAGTCAGGACA
Found at i:70013088 original size:20 final size:20
Alignment explanation
Indices: 70013060--70013101 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
70013050 AATATGCAAG
*
70013060 TATGTCAATTATAGCTTCTA
1 TATGCCAATTATAGCTTCTA
70013080 TATGCCAATTATAGCTTCTA
1 TATGCCAATTATAGCTTCTA
70013100 TA
1 TA
70013102 ATTGCAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.31, C:0.17, G:0.10, T:0.43
Consensus pattern (20 bp):
TATGCCAATTATAGCTTCTA
Found at i:70015597 original size:40 final size:40
Alignment explanation
Indices: 70015542--70015881 Score: 599
Period size: 40 Copynumber: 8.4 Consensus size: 40
70015532 ATACCTTATC
70015542 GGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCG
1 GGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCG
70015582 GGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCG
1 GGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCG
70015622 GGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCG
1 GGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCG
70015662 GGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCG
1 GGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCG
70015702 GGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCG
1 GGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCG
* *
70015742 GGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCG
1 GGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCG
* * * *
70015782 GGAGTTAGCCCGGGTATAGCAACTACTCGCAAAAATGCCTTCG
1 GGACTTAGCCCGGATATAGTAACT--T-GCACAAATGCCTTCG
70015825 GGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCG
1 GGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCG
70015865 GGACTTAGCCCGGATAT
1 GGACTTAGCCCGGATAT
70015882 CATCCGAATA
Statistics
Matches: 285, Mismatches: 12, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
40 249 0.87
41 1 0.00
43 35 0.12
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.24
Consensus pattern (40 bp):
GGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCG
Found at i:70023971 original size:40 final size:40
Alignment explanation
Indices: 70023893--70024116 Score: 274
Period size: 40 Copynumber: 5.5 Consensus size: 40
70023883 ACCCAAGTAT
* *
70023893 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * **
70023932 CTTCGGGTCTTAGCCCTGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
70023972 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
70024012 CTTCGGGAGTTAGCCCGGGTATAG-CAACTACTCGCAAAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* * *
70024055 CTTCGGGACTTAGCCTGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
70024095 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
70024117 CATCCGAATA
Statistics
Matches: 158, Mismatches: 20, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
39 12 0.08
40 112 0.71
41 1 0.01
43 33 0.21
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:70024079 original size:83 final size:79
Alignment explanation
Indices: 70023893--70024116 Score: 281
Period size: 83 Copynumber: 2.8 Consensus size: 79
70023883 ACCCAAGTAT
* * * *
70023893 CTTCGGGATTTAGCCGGATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGCCCTGATATAGT
1 CTTCGGGACTTAGCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
**
70023957 CACTAGCATGAATGC
65 CACTAGCAAAAATGC
* *
70023972 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGAGTTAGCCCGGGTATAG-
1 CTTCGGGACTTAG-CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
70024036 CAACTACTCGCAAAAATGC
65 C-ACTA---GCAAAAATGC
* *
70024055 CTTCGGGACTTAGCCTGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCC-GGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
70024117 CATCCGAATA
Statistics
Matches: 126, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
79 13 0.10
80 47 0.37
81 1 0.01
82 2 0.02
83 63 0.50
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC
ACTAGCAAAAATGC
Found at i:70032041 original size:114 final size:114
Alignment explanation
Indices: 70031841--70032051 Score: 422
Period size: 114 Copynumber: 1.9 Consensus size: 114
70031831 ATAATATAGA
70031841 CTAAATATCAAGAACAAAACATAGCTAGGCAATCCATTCAACTCAAATCTCAACAAAAATAGGGA
1 CTAAATATCAAGAACAAAACATAGCTAGGCAATCCATTCAACTCAAATCTCAACAAAAATAGGGA
70031906 TTAATTTAGGGGATTTCAACAATAATGTGTTAGTACATTCAAAAAGATT
66 TTAATTTAGGGGATTTCAACAATAATGTGTTAGTACATTCAAAAAGATT
70031955 CTAAATATCAAGAACAAAACATAGCTAGGCAATCCATTCAACTCAAATCTCAACAAAAATAGGGA
1 CTAAATATCAAGAACAAAACATAGCTAGGCAATCCATTCAACTCAAATCTCAACAAAAATAGGGA
70032020 TTAATTTAGGGGATTTCAACAATAATGTGTTA
66 TTAATTTAGGGGATTTCAACAATAATGTGTTA
70032052 AAGGTTAATA
Statistics
Matches: 97, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
114 97 1.00
ACGTcount: A:0.45, C:0.16, G:0.13, T:0.26
Consensus pattern (114 bp):
CTAAATATCAAGAACAAAACATAGCTAGGCAATCCATTCAACTCAAATCTCAACAAAAATAGGGA
TTAATTTAGGGGATTTCAACAATAATGTGTTAGTACATTCAAAAAGATT
Found at i:70058383 original size:20 final size:20
Alignment explanation
Indices: 70058345--70058383 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
70058335 GCTCAAAAGT
*
70058345 ACTATAAAACATAGAAAAAC
1 ACTATAAAACATAAAAAAAC
70058365 ACTATAAAACATAAAAAAA
1 ACTATAAAACATAAAAAAA
70058384 TAAATAAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.69, C:0.13, G:0.03, T:0.15
Consensus pattern (20 bp):
ACTATAAAACATAAAAAAAC
Found at i:70060247 original size:10 final size:10
Alignment explanation
Indices: 70060232--70060273 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
70060222 ATTGATATGT
70060232 TTGGTATTGG
1 TTGGTATTGG
*
70060242 TTGGTATTGAA
1 TTGGTATTG-G
*
70060253 ATGGTATTGG
1 TTGGTATTGG
70060263 TTGG-ATTGG
1 TTGGTATTGG
70060272 TT
1 TT
70060274 TAGGTTTGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
9 7 0.26
10 12 0.44
11 8 0.30
ACGTcount: A:0.17, C:0.00, G:0.36, T:0.48
Consensus pattern (10 bp):
TTGGTATTGG
Found at i:70062435 original size:46 final size:46
Alignment explanation
Indices: 70062368--70062536 Score: 198
Period size: 46 Copynumber: 3.6 Consensus size: 46
70062358 GTGCCAATGC
70062368 CATGTCCCAGACATGTCTTACACTGGCT-TACATATCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCT-CATATCGAGGCCGATG
* * * * * *
70062414 CATGTTCCAGACATGTCTTACACTAGCTCTTATCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATATCGAGGCCGATG
* * *
70062460 CCATGTCCCAGACATGGTCTTATACTGGCTCTCATAAT-GTGGCCAATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-ATCGAGGCCGATG
*
70062508 CATGTCCCAGACATATCTTACACTGGCTC
1 CATGTCCCAGACATGTCTTACACTGGCTC
70062537 ACGCAAGTGA
Statistics
Matches: 102, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
46 51 0.50
47 28 0.27
48 22 0.22
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCATATCGAGGCCGATG
Found at i:70062527 original size:94 final size:93
Alignment explanation
Indices: 70062359--70062536 Score: 252
Period size: 94 Copynumber: 1.9 Consensus size: 93
70062349 GTGGGTAAGG
* *
70062359 TGCCAATGCCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGCCGATGCATGTTCCAG
1 TGCCAATGCCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGCCAATGCATGTCCCAG
*
70062424 ACATGTCTTACACTAGCTCTTATCTCAA
66 ACATATCTTACACTAGCTCTTATCTCAA
* * *
70062452 TGCCGATGCCATGTCCCAGACATGGTCTTATACTGGCTCT-CATAAT-GTGGCCAATGCATGTCC
1 TGCCAATGCCATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-ATCGAGGCCAATGCATGTCC
*
70062515 CAGACATATCTTACACTGGCTC
63 CAGACATATCTTACACTAGCTC
70062537 ACGCAAGTGA
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
93 22 0.29
94 50 0.67
95 3 0.04
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (93 bp):
TGCCAATGCCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGCCAATGCATGTCCCAG
ACATATCTTACACTAGCTCTTATCTCAA
Found at i:70064804 original size:30 final size:30
Alignment explanation
Indices: 70064759--70064818 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
70064749 ATTTAATACG
70064759 AACTTTGGCAAAATTACA-TTGTTGCCCCTA
1 AACTTTGGCAAAATTACACTT-TTGCCCCTA
* *
70064789 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
70064819 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 25 0.93
31 2 0.07
ACGTcount: A:0.28, C:0.25, G:0.10, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:70069757 original size:24 final size:23
Alignment explanation
Indices: 70069721--70069766 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
70069711 CATGTTCCCC
70069721 TGCTTTAATTCAAGAAACTCTTTA
1 TGCTTTAATTCAAGAAA-TCTTTA
*
70069745 TGCTTCTAA-TCAATAAATCTTT
1 TGCTT-TAATTCAAGAAATCTTT
70069767 CACTGATGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 5 0.25
24 12 0.60
25 3 0.15
ACGTcount: A:0.33, C:0.17, G:0.07, T:0.43
Consensus pattern (23 bp):
TGCTTTAATTCAAGAAATCTTTA
Found at i:70080276 original size:46 final size:47
Alignment explanation
Indices: 70080036--70080248 Score: 288
Period size: 47 Copynumber: 4.6 Consensus size: 47
70080026 GTGCCAATGC
* * * * *
70080036 CATGTCCCAGACACGGTCTTACACTGGCTCAT-ATCTCA-AGTCAATG
1 CATGTCCTAGACATGGTCTTACACTGACT-ATCATCTCATAGCCGATG
* * * *
70080082 CCATGTTCTAGACATGGTCTTAAACTGACTGTCATCTCATAGCTGATG
1 -CATGTCCTAGACATGGTCTTACACTGACTATCATCTCATAGCCGATG
*
70080130 CATGTCCCAGACATGGTCTTACACTGACTATCATCTCATAGCCGATG
1 CATGTCCTAGACATGGTCTTACACTGACTATCATCTCATAGCCGATG
*
70080177 CATGTCCTAGACATGGTCTTACACTTACTATCATCTCATAGCCGATG
1 CATGTCCTAGACATGGTCTTACACTGACTATCATCTCATAGCCGATG
70080224 CATGTCCTAGACAT-GTCTTACACTG
1 CATGTCCTAGACATGGTCTTACACTG
70080249 GCTTATGTCT
Statistics
Matches: 147, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
46 11 0.07
47 131 0.89
48 5 0.03
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (47 bp):
CATGTCCTAGACATGGTCTTACACTGACTATCATCTCATAGCCGATG
Found at i:70080305 original size:46 final size:46
Alignment explanation
Indices: 70080125--70080392 Score: 152
Period size: 47 Copynumber: 5.7 Consensus size: 46
70080115 ATCTCATAGC
* * * *
70080125 TGATGCATGTCCCAGACATGGTCTTACACT-GACTATCATCTC-ATAGC
1 TGATGCATGTCCCAGACAT-GTCTTACACTAG-CTCTCGTCTCGA-GGT
* * * * * *
70080172 CGATGCATGTCCTAGACATGGTCTTACACTTA-CTATCATCTC-ATAGC
1 TGATGCATGTCCCAGACAT-GTCTTACAC-TAGCTCTCGTCTCGA-GGT
* * * *
70080219 CGATGCATGTCCTAGACATGTCTTACACTGGCT-TATGTCTCGAGGT
1 TGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCGAGGT
* * * * *
70080265 TGATGCATGTCCCTGACATGTCTTACACTAGATCTCGTCTCAATGC
1 TGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCGAGGT
* * * * * * *
70080311 CGATGCCATGTACCAAACATGGTCTTATACTAGCTCTCATAAT-GTGGT
1 TGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGT-CTCGAGGT
* *
70080359 TGATGCATGTCCCACACATGTCTTACACTGGCTC
1 TGATGCATGTCCCAGACATGTCTTACACTAGCTC
70080393 GCGCAAGTGT
Statistics
Matches: 179, Mismatches: 33, Indels: 19
0.77 0.14 0.08
Matches are distributed among these distances:
45 2 0.01
46 68 0.38
47 86 0.48
48 22 0.12
49 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (46 bp):
TGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCGAGGT
Found at i:70086650 original size:46 final size:45
Alignment explanation
Indices: 70086598--70086772 Score: 160
Period size: 46 Copynumber: 3.8 Consensus size: 45
70086588 TGGTTGAGCA
70086598 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATG
* * * * *
70086644 TTCGAACTCTTTGAGTTGAGTCCGAGTT--CGTAAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAA-T--G
* * *
70086689 CATCCGAACTCGTTGAGTTGAGTCCAAGTTCATTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATG
* *
70086737 -CCTGAGCTTGTTGAGTTGAGTCCGAGTTCACTTAGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
70086773 GGCGGGTTAC
Statistics
Matches: 102, Mismatches: 17, Indels: 21
0.73 0.12 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 3 0.03
45 5 0.05
46 53 0.52
47 25 0.25
48 1 0.01
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAATG
Found at i:70086754 original size:93 final size:93
Alignment explanation
Indices: 70086595--70086765 Score: 256
Period size: 93 Copynumber: 1.8 Consensus size: 93
70086585 GGATGGTTGA
* * *
70086595 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCTTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTACGGATGCGAACGCTCGAACTCTTTGAGT
70086660 TGAGTCCGAGTTCGTAAGATGTAACTAG
66 TGAGTCCGAGTTCGTAAGATGTAACTAG
* * *
70086688 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCATTTATGGATGCGAACGC-CTGAGCT-TGTTGA
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTACGGATGCGAACGCTC-GAACTCT-TTGA
70086751 GTTGAGTCCGAGTTC
64 GTTGAGTCCGAGTTC
70086766 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTACGGATGCGAACGCTCGAACTCTTTGAGT
TGAGTCCGAGTTCGTAAGATGTAACTAG
Found at i:70089209 original size:25 final size:25
Alignment explanation
Indices: 70089172--70089224 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
70089162 TAAGTCCCAG
*
70089172 ACTACTTCAGCAGCCAGTGTAGGGA
1 ACTACTTCAGCAGCCAATGTAGGGA
*
70089197 ACTACTTCGGCAGCCAATGTAGGGA
1 ACTACTTCAGCAGCCAATGTAGGGA
70089222 ACT
1 ACT
70089225 CGAGATTTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.26, T:0.21
Consensus pattern (25 bp):
ACTACTTCAGCAGCCAATGTAGGGA
Found at i:70090160 original size:14 final size:14
Alignment explanation
Indices: 70090141--70090168 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
70090131 TCTCGATTGC
70090141 TCCATATAGAATGG
1 TCCATATAGAATGG
70090155 TCCATATAGAATGG
1 TCCATATAGAATGG
70090169 CACCAACAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (14 bp):
TCCATATAGAATGG
Found at i:70101485 original size:40 final size:39
Alignment explanation
Indices: 70101454--70101663 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
70101444 GGACTAAGAT
* *
70101454 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
70101494 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
70101534 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
70101574 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
70101614 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
70101653 CCGAAGGCATT
1 CCGAAGGCATT
70101664 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:70101617 original size:120 final size:120
Alignment explanation
Indices: 70101401--70101663 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
70101391 TTGAATGCTG
* *
70101401 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
70101465 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
70101521 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
70101584 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
70101640 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
70101664 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:70101683 original size:79 final size:80
Alignment explanation
Indices: 70101402--70101698 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
70101392 TGAATGCTGT
* ** * * * **
70101402 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
70101465 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
70101482 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
70101546 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
70101562 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
70101626 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
70101641 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
70101699 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:70106922 original size:46 final size:45
Alignment explanation
Indices: 70106870--70107044 Score: 158
Period size: 46 Copynumber: 3.8 Consensus size: 45
70106860 TGGTTCAGCA
*
70106870 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATG
* * * * *
70106916 TTCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA-GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAA-T--G
* *
70106961 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATG
* * * *
70107009 CCCGAGCTTGTTGAGTTGAGTTCGAGTTCACTTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
70107045 GGCGGGTTAC
Statistics
Matches: 103, Mismatches: 17, Indels: 19
0.74 0.12 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 55 0.53
47 27 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAATG
Found at i:70107026 original size:93 final size:93
Alignment explanation
Indices: 70106867--70107037 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
70106857 GGATGGTTCA
* * **
70106867 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
70106932 TGAG-TCTGAGTTCGTGAGATGTAACTAG
66 TGAGTTC-GAGTTCGTGAGATGTAACTAG
* * * *
70106960 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
70107025 TGAGTTCGAGTTC
66 TGAGTTCGAGTTC
70107038 ACTTAGGGGC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
93 67 0.97
94 2 0.03
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTTCGAGTTCGTGAGATGTAACTAG
Found at i:70110897 original size:25 final size:25
Alignment explanation
Indices: 70110863--70110927 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 25
70110853 GACCCACAAG
70110863 TCGTGTGAGCATACCAATTTACAGC
1 TCGTGTGAGCATACCAATTTACAGC
* * *
70110888 TCGTTTGAGCGTATCAATTTACAGC
1 TCGTGTGAGCATACCAATTTACAGC
*
70110913 TCGTGTAAGCATACC
1 TCGTGTGAGCATACC
70110928 TATTATATAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (25 bp):
TCGTGTGAGCATACCAATTTACAGC
Found at i:70115159 original size:22 final size:21
Alignment explanation
Indices: 70115133--70115177 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 21
70115123 GTATGTACAG
70115133 ATTATTATGTT-TATGTTGTTTA
1 ATTA-TATGTTATATG-TGTTTA
70115155 ATTATATGTTAATATGTGTTTA
1 ATTATATGTT-ATATGTGTTTA
70115177 A
1 A
70115178 AATGCTATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 6 0.29
22 11 0.52
23 4 0.19
ACGTcount: A:0.29, C:0.00, G:0.13, T:0.58
Consensus pattern (21 bp):
ATTATATGTTATATGTGTTTA
Found at i:70117408 original size:39 final size:40
Alignment explanation
Indices: 70117330--70117508 Score: 247
Period size: 40 Copynumber: 4.5 Consensus size: 40
70117320 TTTGGATGAC
*
70117330 ATCCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
**
70117370 ATCCGGAATAAGTCCCGAAGGCA-TTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
* *
70117409 ATCCGGGCTAAGCCCCGAAGGCATTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
* *
70117449 ATCCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAT
* *
70117489 ATCC-GGCTAAATCTCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
70117509 TGCTTGGGTT
Statistics
Matches: 124, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
39 50 0.40
40 72 0.58
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
Found at i:70117461 original size:79 final size:80
Alignment explanation
Indices: 70117330--70117498 Score: 245
Period size: 79 Copynumber: 2.1 Consensus size: 80
70117320 TTTGGATGAC
*
70117330 ATCCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTATATCCGGAATAAGTCCCGAAGGCA-T
1 ATCCGGGCTAAGCCCCAAAGGCATTTGTGCTAGTGACTATATCCGGAATAAGTCCCGAAGGCATT
* *
70117394 TGTGCTAG-TGACTAT
66 TATGCGAGTTG-CTAT
* * **
70117409 ATCCGGGCTAAGCCCCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGTCCCGAAGGCATT
1 ATCCGGGCTAAGCCCCAAAGGCATTTGTGCTAGTGACTATATCCGGAATAAGTCCCGAAGGCATT
70117474 TATGCGAGTTGCTAT
66 TATGCGAGTTGCTAT
70117489 ATCC-GGCTAA
1 ATCCGGGCTAA
70117499 ATCTCGAAGG
Statistics
Matches: 81, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 64 0.79
80 15 0.19
81 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (80 bp):
ATCCGGGCTAAGCCCCAAAGGCATTTGTGCTAGTGACTATATCCGGAATAAGTCCCGAAGGCATT
TATGCGAGTTGCTAT
Found at i:70124661 original size:40 final size:41
Alignment explanation
Indices: 70124606--70124712 Score: 166
Period size: 40 Copynumber: 2.7 Consensus size: 41
70124596 CTAAGTCTAG
* *
70124606 TGACTATATCCGGGCTAAGCCCCGAAGGCATTTGTGCTA-T
1 TGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
70124646 TGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
1 TGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
*
70124687 TG-CTATATCC-GGCTAAATCCCGAAGG
1 TGACTATATCCGGGCTAAGTCCCGAAGG
70124713 TACTTGGGTT
Statistics
Matches: 63, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
39 15 0.24
40 45 0.71
41 3 0.05
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.26
Consensus pattern (41 bp):
TGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
Found at i:70128554 original size:8 final size:9
Alignment explanation
Indices: 70128537--70128593 Score: 57
Period size: 8 Copynumber: 6.3 Consensus size: 9
70128527 TAAAGTTAAA
70128537 ATATATATT
1 ATATATATT
70128546 ATA-ATATT
1 ATATATATT
70128554 ATA-ATATT
1 ATATATATT
*
70128562 ATACT-TAAGT
1 ATA-TAT-ATT
70128572 ATATATATT
1 ATATATATT
70128581 ATATTATATT
1 ATA-TATATT
70128591 ATA
1 ATA
70128594 ATAAAACAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
8 16 0.39
9 10 0.24
10 15 0.37
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (9 bp):
ATATATATT
Found at i:70129855 original size:17 final size:17
Alignment explanation
Indices: 70129833--70129866 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
70129823 CTAGATCTAT
70129833 TCTATCGAGTTATTTGA
1 TCTATCGAGTTATTTGA
*
70129850 TCTATCGGGTTATTTGA
1 TCTATCGAGTTATTTGA
70129867 AGATGCACGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.12, G:0.21, T:0.47
Consensus pattern (17 bp):
TCTATCGAGTTATTTGA
Found at i:70130181 original size:41 final size:40
Alignment explanation
Indices: 70130135--70130321 Score: 130
Period size: 46 Copynumber: 4.6 Consensus size: 40
70130125 CGACTTCAAG
* *
70130135 TCGATGAGACACTGAGTGTCAATTTACTACTTCGAATTAAT
1 TCGATGAGACACTGGGTGTCAAATTACTACTT-GAATTAAT
* * * ** *
70130176 TCGATGAAATACTGGGTGCCAAATTACT--TTGGTTTAGT
1 TCGATGAGACACTGGGTGTCAAATTACTACTTGAATTAAT
*
70130214 T-GATGAGACACTGGGTGTCAAATTATTACTTAGAATTATCCGAT
1 TCGATGAGACACTGGGTGTCAAATTACTACTT-GAATTA----AT
** * *
70130258 GAAGATGAGACACTGGGTATCAAATTATTACTTAGAATT-AT
1 -TCGATGAGACACTGGGTGTCAAATTACTACTT-GAATTAAT
* * *
70130299 CCGATGAGGCACTGGGTGCCAAA
1 TCGATGAGACACTGGGTGTCAAA
70130322 CTGGTGTGTT
Statistics
Matches: 115, Mismatches: 22, Indels: 19
0.74 0.14 0.12
Matches are distributed among these distances:
37 22 0.19
38 6 0.05
39 4 0.03
40 22 0.19
41 25 0.22
44 1 0.01
46 35 0.30
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.32
Consensus pattern (40 bp):
TCGATGAGACACTGGGTGTCAAATTACTACTTGAATTAAT
Found at i:70130268 original size:46 final size:46
Alignment explanation
Indices: 70130215--70130305 Score: 173
Period size: 46 Copynumber: 2.0 Consensus size: 46
70130205 TGGTTTAGTT
*
70130215 GATGAGACACTGGGTGTCAAATTATTACTTAGAATTATCCGATGAA
1 GATGAGACACTGGGTATCAAATTATTACTTAGAATTATCCGATGAA
70130261 GATGAGACACTGGGTATCAAATTATTACTTAGAATTATCCGATGA
1 GATGAGACACTGGGTATCAAATTATTACTTAGAATTATCCGATGA
70130306 GGCACTGGGT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.31
Consensus pattern (46 bp):
GATGAGACACTGGGTATCAAATTATTACTTAGAATTATCCGATGAA
Found at i:70132852 original size:25 final size:26
Alignment explanation
Indices: 70132822--70132880 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
70132812 ATTATTAAAC
* *
70132822 TTATAAAAAAATTT-ATATGGAAAAA
1 TTATAAAAAAATTTAAAATAGAAAAA
*
70132847 TTATAAAAATATTTAAAATAGAAAAA
1 TTATAAAAAAATTTAAAATAGAAAAA
*
70132873 TTTTAAAA
1 TTATAAAA
70132881 TTTTAAAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 13 0.45
26 16 0.55
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATAAAAAAATTTAAAATAGAAAAA
Found at i:70132903 original size:9 final size:9
Alignment explanation
Indices: 70132850--70132905 Score: 53
Period size: 9 Copynumber: 6.3 Consensus size: 9
70132840 GGAAAAATTA
70132850 TAAAAATAT
1 TAAAAATAT
*
70132859 TTAAAATA-
1 TAAAAATAT
*
70132867 GAAAAAT-T
1 TAAAAATAT
* *
70132875 TTAAAATTT
1 TAAAAATAT
70132884 TAAAAATTAT
1 TAAAAA-TAT
70132894 TAAAAATAT
1 TAAAAATAT
70132903 TAA
1 TAA
70132906 CATTTAAAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
8 10 0.27
9 19 0.51
10 8 0.22
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (9 bp):
TAAAAATAT
Found at i:70135475 original size:36 final size:36
Alignment explanation
Indices: 70135435--70136226 Score: 1584
Period size: 36 Copynumber: 22.0 Consensus size: 36
70135425 TATCCAAAAA
70135435 AAATTTCACATTTTGTAATATTTATATTATTAAATT
1 AAATTTCACATTTTGTAATATTTATATTATTAAATT
70135471 AAATTTCACATTTTGTAATATTTATATTATTAAATT
1 AAATTTCACATTTTGTAATATTTATATTATTAAATT
70135507 AAATTTCACATTTTGTAATATTTATATTATTAAATT
1 AAATTTCACATTTTGTAATATTTATATTATTAAATT
70135543 AAATTTCACATTTTGTAATATTTATATTATTAAATT
1 AAATTTCACATTTTGTAATATTTATATTATTAAATT
70135579 AAATTTCACATTTTGTAATATTTATATTATTAAATT
1 AAATTTCACATTTTGTAATATTTATATTATTAAATT
70135615 AAATTTCACATTTTGTAATATTTATATTATTAAATT
1 AAATTTCACATTTTGTAATATTTATATTATTAAATT
70135651 AAATTTCACATTTTGTAATATTTATATTATTAAATT
1 AAATTTCACATTTTGTAATATTTATATTATTAAATT
70135687 AAATTTCACATTTTGTAATATTTATATTATTAAATT
1 AAATTTCACATTTTGTAATATTTATATTATTAAATT
70135723 AAATTTCACATTTTGTAATATTTATATTATTAAATT
1 AAATTTCACATTTTGTAATATTTATATTATTAAATT
70135759 AAATTTCACATTTTGTAATATTTATATTATTAAATT
1 AAATTTCACATTTTGTAATATTTATATTATTAAATT
70135795 AAATTTCACATTTTGTAATATTTATATTATTAAATT
1 AAATTTCACATTTTGTAATATTTATATTATTAAATT
70135831 AAATTTCACATTTTGTAATATTTATATTATTAAATT
1 AAATTTCACATTTTGTAATATTTATATTATTAAATT
70135867 AAATTTCACATTTTGTAATATTTATATTATTAAATT
1 AAATTTCACATTTTGTAATATTTATATTATTAAATT
70135903 AAATTTCACATTTTGTAATATTTATATTATTAAATT
1 AAATTTCACATTTTGTAATATTTATATTATTAAATT
70135939 AAATTTCACATTTTGTAATATTTATATTATTAAATT
1 AAATTTCACATTTTGTAATATTTATATTATTAAATT
70135975 AAATTTCACATTTTGTAATATTTATATTATTAAATT
1 AAATTTCACATTTTGTAATATTTATATTATTAAATT
70136011 AAATTTCACATTTTGTAATATTTATATTATTAAATT
1 AAATTTCACATTTTGTAATATTTATATTATTAAATT
70136047 AAATTTCACATTTTGTAATATTTATATTATTAAATT
1 AAATTTCACATTTTGTAATATTTATATTATTAAATT
70136083 AAATTTCACATTTTGTAATATTTATATTATTAAATT
1 AAATTTCACATTTTGTAATATTTATATTATTAAATT
70136119 AAATTTCACATTTTGTAATATTTATATTATTAAATT
1 AAATTTCACATTTTGTAATATTTATATTATTAAATT
70136155 AAATTTCACATTTTGTAATATTTATATTATTAAATT
1 AAATTTCACATTTTGTAATATTTATATTATTAAATT
70136191 AAATTTCACATTTTGTAATATTTATATTATTAAATT
1 AAATTTCACATTTTGTAATATTTATATTATTAAATT
70136227 GTTTAATCAT
Statistics
Matches: 756, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 756 1.00
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.53
Consensus pattern (36 bp):
AAATTTCACATTTTGTAATATTTATATTATTAAATT
Found at i:70137572 original size:46 final size:45
Alignment explanation
Indices: 70137411--70137573 Score: 154
Period size: 46 Copynumber: 3.6 Consensus size: 45
70137401 TGGGCATCCG
* * *
70137411 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
1 AACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCC
* * * *
70137456 AACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGGCATCC
1 AACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAAC---GC--CC
70137502 GAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCC
1 -AACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCC
* *
70137548 TAGCTCGTTGAGTTGAGTCTGAGTTC
1 -AACTCGTTGAGTTGAGTCCGAGTTC
70137574 GCTTATGGGC
Statistics
Matches: 95, Mismatches: 13, Indels: 19
0.75 0.10 0.15
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
44 3 0.03
45 24 0.25
46 27 0.28
47 24 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCC
Found at i:70142081 original size:40 final size:40
Alignment explanation
Indices: 70142030--70143012 Score: 1639
Period size: 40 Copynumber: 24.6 Consensus size: 40
70142020 TTGAATGCTG
* * * * *
70142030 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAA
* *
70142070 TCCGGATTAAGTTCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
70142110 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
*
70142150 TCCGGGTTAAGTCCCGAAGGCACTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
*
70142190 TCCGGGTTAAGTCCCGAAGGCACTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
*
70142230 TCCGGGTTAAGTCCCGAAGGCACTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
*
70142270 TCCGGGTTAAGTCCCGAAGGCACTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
*
70142310 TCCGGGTTAAGTCCCGAAGGCACTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
*
70142350 TCCGGGTTAAGTCCCGAAGGCACTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
*
70142390 TCCGGGTTAAGTCCCGAAGGCACTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
*
70142430 TCCGGGTTAAGTCCCGAAGGCACTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
*
70142470 TCCGGGTTAAGTCCCGAAGGCACTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
*
70142510 TCCGGGTTAAGTCCCGAAGGCACTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
*
70142550 TCCGGGTTAAGTCCCGAAGGCACTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
*
70142590 TCCGGGTTAAGTCCCGAAGGCACTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
*
70142630 TCCGGGTTAAGTCCCGAAGGCACTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
*
70142670 TCCGGGTTAAGTCCCGAAGGCACTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
*
70142710 TCCGGGTTAAGTCCCGAAGGCACTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
*
70142750 TCCGGGTTAAGTCCCGAAGGCACTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
*
70142790 TCCGGGTTAAGTCCCGAAGGCACTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
*
70142830 TCCGGGTTAAGTCCCGAAGGCACTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
*
70142870 TCCGGGTTAAGTCCCGAAGGCACTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
70142910 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
* * **
70142950 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
* *
70142989 TCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
70143013 TGAACGAGGA
Statistics
Matches: 925, Mismatches: 16, Indels: 5
0.98 0.02 0.01
Matches are distributed among these distances:
39 35 0.04
40 882 0.95
41 8 0.01
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
Found at i:70146030 original size:40 final size:40
Alignment explanation
Indices: 70145926--70146089 Score: 183
Period size: 40 Copynumber: 4.2 Consensus size: 40
70145916 AAACCAAGTA
* * * *
70145926 CCTTCGGGATTTA-ACCAGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
70145965 TCTTCGGGAC-TAGCCCAGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
70146004 CCTTCAGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
70146044 CCTTTGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
70146084 CCTTCG
1 CCTTCG
70146090 TTATCATCCA
Statistics
Matches: 107, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 3 0.03
39 38 0.36
40 66 0.62
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:70152220 original size:42 final size:43
Alignment explanation
Indices: 70152114--70152275 Score: 168
Period size: 43 Copynumber: 3.8 Consensus size: 43
70152104 TAAGCTCATA
* *
70152114 CAATGCC-ATCGTCCCAAACGTGGTCTTACATGAAATCAAATAT
1 CAATGCCAAT-GTCCCAAACATGGTCTTACACGAAATCAAATAT
** * * *
70152157 TGATGCCACTGTCCCAGACATGGTCTTACACGAAATCATATA-
1 CAATGCCAATGTCCCAAACATGGTCTTACACGAAATCAAATAT
*
70152199 CGATGCCAATGTCCCAAACATGGTCTTACACGTAAATCACAA-AT
1 CAATGCCAATGTCCCAAACATGGTCTTACACG-AAATCA-AATAT
* * **
70152243 CAATGCCAACGTCCCAGATGTGGTCTTACACGA
1 CAATGCCAATGTCCCAAACATGGTCTTACACGA
70152276 TAACACATCT
Statistics
Matches: 99, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
42 29 0.29
43 41 0.41
44 29 0.29
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (43 bp):
CAATGCCAATGTCCCAAACATGGTCTTACACGAAATCAAATAT
Found at i:70152267 original size:86 final size:85
Alignment explanation
Indices: 70152111--70152275 Score: 210
Period size: 86 Copynumber: 1.9 Consensus size: 85
70152101 TCATAAGCTC
* * **
70152111 ATACAATGCCATCGTCCCAAACGTGGTCTTACATGAAATCAAATATTGATGCCACTGTCCCAGAC
1 ATACAATGCCATCGTCCCAAACATGGTCTTACACGAAATCAAATATCAATGCCACTGTCCCAGAC
70152176 ATGGTCTTACACGAAATCAT
66 ATGGTCTTACACGAAATCAT
*
70152196 ATACGATGCCAAT-GTCCCAAACATGGTCTTACACGTAAATCACAA-ATCAATGCCAAC-GTCCC
1 ATACAATGCC-ATCGTCCCAAACATGGTCTTACACG-AAATCA-AATATCAATGCC-ACTGTCCC
**
70152258 AGATGTGGTCTTACACGA
62 AGACATGGTCTTACACGA
70152276 TAACACATCT
Statistics
Matches: 69, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
85 29 0.42
86 36 0.52
87 4 0.06
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (85 bp):
ATACAATGCCATCGTCCCAAACATGGTCTTACACGAAATCAAATATCAATGCCACTGTCCCAGAC
ATGGTCTTACACGAAATCAT
Found at i:70154401 original size:19 final size:19
Alignment explanation
Indices: 70154377--70154421 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
70154367 AGTTATTCGA
*
70154377 GCTTACTAAGCATGAAAAT
1 GCTTACCAAGCATGAAAAT
*
70154396 GCTTACCCAGCATGAAAAT
1 GCTTACCAAGCATGAAAAT
70154415 GCTTACC
1 GCTTACC
70154422 CCTCCCTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (19 bp):
GCTTACCAAGCATGAAAAT
Found at i:70154422 original size:19 final size:19
Alignment explanation
Indices: 70154385--70154422 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
70154375 GAGCTTACTA
70154385 AGCATGAAAATGCTTACCC
1 AGCATGAAAATGCTTACCC
70154404 AGCATGAAAATGCTTACCC
1 AGCATGAAAATGCTTACCC
70154423 CTCCCTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.26, G:0.16, T:0.21
Consensus pattern (19 bp):
AGCATGAAAATGCTTACCC
Found at i:70160466 original size:26 final size:26
Alignment explanation
Indices: 70160437--70160489 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
70160427 CATGCAACAT
70160437 ATGAATGGGTAGATCCAACATCTATC
1 ATGAATGGGTAGATCCAACATCTATC
70160463 ATGAATGGGTAGATCCAACATCTATC
1 ATGAATGGGTAGATCCAACATCTATC
70160489 A
1 A
70160490 ACGCAGTGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (26 bp):
ATGAATGGGTAGATCCAACATCTATC
Found at i:70163040 original size:71 final size:67
Alignment explanation
Indices: 70162963--70163104 Score: 176
Period size: 71 Copynumber: 2.1 Consensus size: 67
70162953 TCACCAGATA
* * * * *
70162963 CAGATATTGTGGCTAGGCCACCAGAACAGATATATGTATGTTGCGAAGCCACCAGACTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAAAACAGATATATG--TG--GCGAAGCCACCAGACTACAGCGA
70163028 GGCTGC
62 GGCTGC
* * *
70163034 CAGATATTGTGACGAAGTCACCAAAACAGATATATGTGGCGAGGCCACCAGATTACAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAAAACAGATATATGTGGCGAAGCCACCAGACTACAGCGAGGCT
70163099 GC
66 GC
70163101 CAGA
1 CAGA
70163105 ACACTTCCTC
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
67 30 0.48
69 2 0.03
71 31 0.49
ACGTcount: A:0.31, C:0.23, G:0.27, T:0.18
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAAAACAGATATATGTGGCGAAGCCACCAGACTACAGCGAGGCT
GC
Found at i:70164351 original size:134 final size:134
Alignment explanation
Indices: 70164111--70164377 Score: 525
Period size: 134 Copynumber: 2.0 Consensus size: 134
70164101 GGAGTTGAAT
*
70164111 TAGAAGCTGAGTGAATTATGCCATTAAAGCTTGAAGAGTCTATTTTCTTACAAAAGAAACTATAG
1 TAGAAGCTGAGTGAATTATGCCATTAAAGCTTGAAGAGTCTATTTTCTTACAAAAGAAACTATAA
70164176 AAACAAAAGAGTTACCGATCTTGAGATATTTGAAGTATTGTGGGGCTGAGTCAAAATGACTACTA
66 AAACAAAAGAGTTACCGATCTTGAGATATTTGAAGTATTGTGGGGCTGAGTCAAAATGACTACTA
70164241 GATA
131 GATA
70164245 TAGAAGCTGAGTGAATTATGCCATTAAAGCTTGAAGAGTCTATTTTCTTACAAAAGAAACTATAA
1 TAGAAGCTGAGTGAATTATGCCATTAAAGCTTGAAGAGTCTATTTTCTTACAAAAGAAACTATAA
70164310 AAACAAAAGAGTTACCGATCTTGAGATATTTGAAGTATTGTGGGGCTGAGTCAAAATGACTACTA
66 AAACAAAAGAGTTACCGATCTTGAGATATTTGAAGTATTGTGGGGCTGAGTCAAAATGACTACTA
70164375 GAT
131 GAT
70164378 TCCCTGTTCT
Statistics
Matches: 132, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
134 132 1.00
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.29
Consensus pattern (134 bp):
TAGAAGCTGAGTGAATTATGCCATTAAAGCTTGAAGAGTCTATTTTCTTACAAAAGAAACTATAA
AAACAAAAGAGTTACCGATCTTGAGATATTTGAAGTATTGTGGGGCTGAGTCAAAATGACTACTA
GATA
Found at i:70165270 original size:27 final size:27
Alignment explanation
Indices: 70165239--70165416 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
70165229 TAAATTGTAC
70165239 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
70165266 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70165292 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
70165320 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
70165348 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70165375 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
70165402 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70165417 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:70165353 original size:82 final size:81
Alignment explanation
Indices: 70165240--70165395 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
70165230 AAATTGTACA
* *
70165240 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
70165304 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
70165321 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
70165386 TGCGAGTTGA
65 TGCGAATTGA
70165396 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:70165407 original size:82 final size:81
Alignment explanation
Indices: 70165236--70165416 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
70165226 GATTAAATTG
* *
70165236 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
70165301 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
70165317 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
70165381 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
70165399 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
70165417 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:70165640 original size:62 final size:62
Alignment explanation
Indices: 70165543--70165667 Score: 250
Period size: 62 Copynumber: 2.0 Consensus size: 62
70165533 ATACTTGGTG
70165543 TTGAGCTCGGTAAGTTTGAACCTATGTGACAACTATACTTGAAGTCACGTACATAAAATTTA
1 TTGAGCTCGGTAAGTTTGAACCTATGTGACAACTATACTTGAAGTCACGTACATAAAATTTA
70165605 TTGAGCTCGGTAAGTTTGAACCTATGTGACAACTATACTTGAAGTCACGTACATAAAATTTA
1 TTGAGCTCGGTAAGTTTGAACCTATGTGACAACTATACTTGAAGTCACGTACATAAAATTTA
70165667 T
1 T
70165668 CGTAGGATGG
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.33
Consensus pattern (62 bp):
TTGAGCTCGGTAAGTTTGAACCTATGTGACAACTATACTTGAAGTCACGTACATAAAATTTA
Found at i:70166359 original size:305 final size:305
Alignment explanation
Indices: 70165808--70166417 Score: 1220
Period size: 305 Copynumber: 2.0 Consensus size: 305
70165798 TAGGTTGGAG
70165808 GAACTATGGTATGGTTCGGAATGGATGGAGTAATTAGCCTCGTTCCATTTTGTTTTCTCTTGTGA
1 GAACTATGGTATGGTTCGGAATGGATGGAGTAATTAGCCTCGTTCCATTTTGTTTTCTCTTGTGA
70165873 TAATGTTATTGATGGATGGTAGTGCATAGCTTATGACTTACTGAGTTATAAACTCACTCGGTGTT
66 TAATGTTATTGATGGATGGTAGTGCATAGCTTATGACTTACTGAGTTATAAACTCACTCGGTGTT
70165938 TCCTTGTCACCTATTCTAGGTTTCTTGGACACATCTCTTTTTGCGTGATCGGGCCGTCATCGAAG
131 TCCTTGTCACCTATTCTAGGTTTCTTGGACACATCTCTTTTTGCGTGATCGGGCCGTCATCGAAG
70166003 TCATCACACCGGATAGCAAGTTTTGGTACTTTCTTCTTAGTTGGCTTAGAAGAACATTTTGGCAT
196 TCATCACACCGGATAGCAAGTTTTGGTACTTTCTTCTTAGTTGGCTTAGAAGAACATTTTGGCAT
70166068 GTATAAGCTATTACGTTGTGTTTGAACTTTGGCATGTAAACTTTA
261 GTATAAGCTATTACGTTGTGTTTGAACTTTGGCATGTAAACTTTA
70166113 GAACTATGGTATGGTTCGGAATGGATGGAGTAATTAGCCTCGTTCCATTTTGTTTTCTCTTGTGA
1 GAACTATGGTATGGTTCGGAATGGATGGAGTAATTAGCCTCGTTCCATTTTGTTTTCTCTTGTGA
70166178 TAATGTTATTGATGGATGGTAGTGCATAGCTTATGACTTACTGAGTTATAAACTCACTCGGTGTT
66 TAATGTTATTGATGGATGGTAGTGCATAGCTTATGACTTACTGAGTTATAAACTCACTCGGTGTT
70166243 TCCTTGTCACCTATTCTAGGTTTCTTGGACACATCTCTTTTTGCGTGATCGGGCCGTCATCGAAG
131 TCCTTGTCACCTATTCTAGGTTTCTTGGACACATCTCTTTTTGCGTGATCGGGCCGTCATCGAAG
70166308 TCATCACACCGGATAGCAAGTTTTGGTACTTTCTTCTTAGTTGGCTTAGAAGAACATTTTGGCAT
196 TCATCACACCGGATAGCAAGTTTTGGTACTTTCTTCTTAGTTGGCTTAGAAGAACATTTTGGCAT
70166373 GTATAAGCTATTACGTTGTGTTTGAACTTTGGCATGTAAACTTTA
261 GTATAAGCTATTACGTTGTGTTTGAACTTTGGCATGTAAACTTTA
70166418 AGCCATGCGA
Statistics
Matches: 305, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
305 305 1.00
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.39
Consensus pattern (305 bp):
GAACTATGGTATGGTTCGGAATGGATGGAGTAATTAGCCTCGTTCCATTTTGTTTTCTCTTGTGA
TAATGTTATTGATGGATGGTAGTGCATAGCTTATGACTTACTGAGTTATAAACTCACTCGGTGTT
TCCTTGTCACCTATTCTAGGTTTCTTGGACACATCTCTTTTTGCGTGATCGGGCCGTCATCGAAG
TCATCACACCGGATAGCAAGTTTTGGTACTTTCTTCTTAGTTGGCTTAGAAGAACATTTTGGCAT
GTATAAGCTATTACGTTGTGTTTGAACTTTGGCATGTAAACTTTA
Found at i:70170986 original size:15 final size:17
Alignment explanation
Indices: 70170948--70170987 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
70170938 TTATGTAAAT
70170948 TTAATGTTGTATTGTATG
1 TTAATG-TGTATTGTATG
70170966 -TAATGTG-ATT-TATG
1 TTAATGTGTATTGTATG
70170980 TTAATGTG
1 TTAATGTG
70170988 CCTTACTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 4 0.19
15 10 0.48
16 2 0.10
17 5 0.24
ACGTcount: A:0.25, C:0.00, G:0.23, T:0.53
Consensus pattern (17 bp):
TTAATGTGTATTGTATG
Found at i:70174698 original size:6 final size:6
Alignment explanation
Indices: 70174687--70174712 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
70174677 AGTTATGGTG
70174687 GAATAT GAATAT GAATAT GAATAT GA
1 GAATAT GAATAT GAATAT GAATAT GA
70174713 TTGATACGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.19, T:0.31
Consensus pattern (6 bp):
GAATAT
Found at i:70179969 original size:40 final size:41
Alignment explanation
Indices: 70179906--70180057 Score: 184
Period size: 40 Copynumber: 3.8 Consensus size: 41
70179896 CATTTGAATG
* * *
70179906 ATATCCGGGCTAAGTCCCAAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGATT
* *
70179946 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGATT
* * *
70179986 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGATT
* * *
70180026 ATACCCGGGTTAAGACCCGAAGGCAATTATGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGC
70180058 TTGTGGTTAT
Statistics
Matches: 98, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
40 95 0.97
41 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGATT
Found at i:70180069 original size:80 final size:80
Alignment explanation
Indices: 70179906--70180077 Score: 186
Period size: 80 Copynumber: 2.2 Consensus size: 80
70179896 CATTTGAATG
* * * * *
70179906 ATATCCGGGCTAAGTCCCAAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCAAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
* * *
70179971 TTTGTGCGAGTTGAT
66 ATTATGCGAGTGGAT
** * *
70179986 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCAAAGGCATTTATGCGAG-TGACTATACCCGGGCTAAGACCCGAAGGC
** *
70180050 AATTATGCTTGTGGTT
65 AATTATGCGAGTGGAT
70180066 ATATCC-GGCTAA
1 ATATCCGGGCTAA
70180078 ATTTCGAAGA
Statistics
Matches: 76, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
79 6 0.08
80 68 0.89
81 2 0.03
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCAAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
ATTATGCGAGTGGAT
Found at i:70188240 original size:55 final size:55
Alignment explanation
Indices: 70188175--70188281 Score: 205
Period size: 55 Copynumber: 1.9 Consensus size: 55
70188165 CTTAGTATCA
70188175 AAAATAAGATATGCGTGTGTTATGATTATTGATATATGTGTGCTTGAGCATTACG
1 AAAATAAGATATGCGTGTGTTATGATTATTGATATATGTGTGCTTGAGCATTACG
*
70188230 AAAATAAGATATGGGTGTGTTATGATTATTGATATATGTGTGCTTGAGCATT
1 AAAATAAGATATGCGTGTGTTATGATTATTGATATATGTGTGCTTGAGCATT
70188282 TGAATACATC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.31, C:0.06, G:0.24, T:0.39
Consensus pattern (55 bp):
AAAATAAGATATGCGTGTGTTATGATTATTGATATATGTGTGCTTGAGCATTACG
Done.