Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 213 of 322
Found at i:70188344 original size:40 final size:40
Alignment explanation
Indices: 70188289--70189111 Score: 1594
Period size: 40 Copynumber: 20.6 Consensus size: 40
70188279 ATTTGAATAC
70188289 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
70188329 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
70188369 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
70188409 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
70188449 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
70188489 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
70188529 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
70188569 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
70188609 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
70188649 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
70188689 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
70188729 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
70188769 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
70188809 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
70188849 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
70188889 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
70188929 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
70188969 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
70189009 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
70189049 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
70189089 A-CTCGGGTTAAGACCCGAAGGCA
1 ATC-CGGGCTAAGACCCGAAGGCA
70189112 ATTGAGCTTG
Statistics
Matches: 778, Mismatches: 4, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
39 1 0.00
40 777 1.00
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
Found at i:70189897 original size:150 final size:150
Alignment explanation
Indices: 70189626--70189925 Score: 591
Period size: 150 Copynumber: 2.0 Consensus size: 150
70189616 TTTAAGTACT
70189626 TTTTGTGATGTATGTGTGTACAGCCATGCGAAAATGGCTCGTAGAAGTGGAGTATGGCATTAGAC
1 TTTTGTGATGTATGTGTGTACAGCCATGCGAAAATGGCTCGTAGAAGTGGAGTATGGCATTAGAC
70189691 CATTTGTGTTTATGTATGTATATATGGTTTCATGATGTGACTATGGATTGGAATGGAAGTGTTGG
66 CATTTGTGTTTATGTATGTATATATGGTTTCATGATGTGACTATGGATTGGAATGGAAGTGTTGG
*
70189756 GCAAATGATCAGCCATTGGA
131 GAAAATGATCAGCCATTGGA
70189776 TTTTGTGATGTATGTGTGTACAGCCATGCGAAAATGGCTCGTAGAAGTGGAGTATGGCATTAGAC
1 TTTTGTGATGTATGTGTGTACAGCCATGCGAAAATGGCTCGTAGAAGTGGAGTATGGCATTAGAC
70189841 CATTTGTGTTTATGTATGTATATATGGTTTCATGATGTGACTATGGATTGGAATGGAAGTGTTGG
66 CATTTGTGTTTATGTATGTATATATGGTTTCATGATGTGACTATGGATTGGAATGGAAGTGTTGG
70189906 GAAAATGATCAGCCATTGGA
131 GAAAATGATCAGCCATTGGA
70189926 ATGGCTAAAT
Statistics
Matches: 149, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 149 1.00
ACGTcount: A:0.26, C:0.10, G:0.29, T:0.35
Consensus pattern (150 bp):
TTTTGTGATGTATGTGTGTACAGCCATGCGAAAATGGCTCGTAGAAGTGGAGTATGGCATTAGAC
CATTTGTGTTTATGTATGTATATATGGTTTCATGATGTGACTATGGATTGGAATGGAAGTGTTGG
GAAAATGATCAGCCATTGGA
Found at i:70192811 original size:20 final size:20
Alignment explanation
Indices: 70192786--70192830 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
70192776 AAATGGAATG
70192786 TATCATCATATGAGTTGAGA
1 TATCATCATATGAGTTGAGA
70192806 TATCATCATATGAGTTGAGA
1 TATCATCATATGAGTTGAGA
70192826 TATCA
1 TATCA
70192831 AATGATTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.36
Consensus pattern (20 bp):
TATCATCATATGAGTTGAGA
Found at i:70192835 original size:17 final size:17
Alignment explanation
Indices: 70192790--70192835 Score: 56
Period size: 20 Copynumber: 2.5 Consensus size: 17
70192780 GGAATGTATC
*
70192790 ATCATATGAGTTGAGAT
1 ATCAAATGAGTTGAGAT
70192807 ATCATCATATGAGTTGAGAT
1 ATCA--A-ATGAGTTGAGAT
70192827 ATCAAATGA
1 ATCAAATGA
70192836 TTTGTGAAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
17 8 0.32
18 1 0.04
20 16 0.64
ACGTcount: A:0.39, C:0.09, G:0.20, T:0.33
Consensus pattern (17 bp):
ATCAAATGAGTTGAGAT
Found at i:70194145 original size:15 final size:15
Alignment explanation
Indices: 70194125--70194153 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
70194115 CTAATTTTTA
70194125 TTACTAATTCTTCTC
1 TTACTAATTCTTCTC
70194140 TTACTAATTCTTCT
1 TTACTAATTCTTCT
70194154 TTTTCGTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.24, G:0.00, T:0.55
Consensus pattern (15 bp):
TTACTAATTCTTCTC
Found at i:70207731 original size:32 final size:32
Alignment explanation
Indices: 70207695--70207764 Score: 131
Period size: 32 Copynumber: 2.2 Consensus size: 32
70207685 AACATTCTGA
*
70207695 GTTATGACATGTATAGGGACTTATTTATTTTG
1 GTTATGACATGTATAGGGACTTAGTTATTTTG
70207727 GTTATGACATGTATAGGGACTTAGTTATTTTG
1 GTTATGACATGTATAGGGACTTAGTTATTTTG
70207759 GTTATG
1 GTTATG
70207765 TGTCATAATT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.24, C:0.06, G:0.24, T:0.46
Consensus pattern (32 bp):
GTTATGACATGTATAGGGACTTAGTTATTTTG
Found at i:70210341 original size:20 final size:20
Alignment explanation
Indices: 70210316--70210360 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
70210306 AAATGGAATG
70210316 TATCATCATATGAGTTGAGA
1 TATCATCATATGAGTTGAGA
70210336 TATCATCATATGAGTTGAGA
1 TATCATCATATGAGTTGAGA
70210356 TATCA
1 TATCA
70210361 AATGATTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.36
Consensus pattern (20 bp):
TATCATCATATGAGTTGAGA
Found at i:70210365 original size:17 final size:17
Alignment explanation
Indices: 70210320--70210365 Score: 56
Period size: 20 Copynumber: 2.5 Consensus size: 17
70210310 GGAATGTATC
*
70210320 ATCATATGAGTTGAGAT
1 ATCAAATGAGTTGAGAT
70210337 ATCATCATATGAGTTGAGAT
1 ATCA--A-ATGAGTTGAGAT
70210357 ATCAAATGA
1 ATCAAATGA
70210366 TTTGTGAAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
17 8 0.32
18 1 0.04
20 16 0.64
ACGTcount: A:0.39, C:0.09, G:0.20, T:0.33
Consensus pattern (17 bp):
ATCAAATGAGTTGAGAT
Found at i:70217009 original size:46 final size:44
Alignment explanation
Indices: 70216933--70217094 Score: 144
Period size: 46 Copynumber: 3.5 Consensus size: 44
70216923 CTGATGGATA
* *
70216933 TCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCCAATGCATG
1 TCCCAGACATGTCTTACACTAGCCT-CGTCT-GAGGCCAATGCATG
* * * *
70216979 TCCCACACATGTCTTACACTAGCACTCGTCTTAAAGCCGATGCCATG
1 TCCCAGACATGTCTTACACTAGC-CTCGTC-TGAGGCCAATG-CATG
* * * * *
70217026 TCCCAGACATAGTCTTACACAAGCTCTCATAATGTGGCCATTGCATG
1 TCCCAGACAT-GTCTTACACTAGC-CTCGT-CTGAGGCCAATGCATG
*
70217073 TCCCAGGCATGTCTTACACTAG
1 TCCCAGACATGTCTTACACTAG
70217095 TTCACAATAA
Statistics
Matches: 93, Mismatches: 18, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
46 43 0.46
47 28 0.30
48 22 0.24
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.27
Consensus pattern (44 bp):
TCCCAGACATGTCTTACACTAGCCTCGTCTGAGGCCAATGCATG
Found at i:70222022 original size:29 final size:27
Alignment explanation
Indices: 70222004--70222073 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
70221994 ATATTAAGTC
70222004 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
70222031 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
70222059 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
70222074 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:70222067 original size:28 final size:28
Alignment explanation
Indices: 70222004--70222101 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
70221994 ATATTAAGTC
*
70222004 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
70222031 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
70222059 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
70222088 CGCACACTTAGTGC
1 CGCACACTTAGTGC
70222102 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:70230012 original size:59 final size:59
Alignment explanation
Indices: 70229889--70230014 Score: 162
Period size: 60 Copynumber: 2.1 Consensus size: 59
70229879 ATTTTTTTGA
* **
70229889 AATTTTTAGAATTAAAACTAAATCGACCAATTTGTAAATGTTAAGGGCTAAATTTATTG
1 AATTTTTAGAATTAAAACTAAATCGACAAATTTGTAAACATTAAGGGCTAAATTTATTG
* * * * *
70229948 AATTTTTAGAATTCAAACTAAATTGACAAACTTTGTAAACATTGAGGTCTGAATTTATTG
1 AATTTTTAGAATTAAAACTAAATCGACAAA-TTTGTAAACATTAAGGGCTAAATTTATTG
*
70230008 ATTTTTT
1 AATTTTT
70230015 TTATATATAT
Statistics
Matches: 57, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
59 27 0.47
60 30 0.53
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (59 bp):
AATTTTTAGAATTAAAACTAAATCGACAAATTTGTAAACATTAAGGGCTAAATTTATTG
Found at i:70230890 original size:24 final size:24
Alignment explanation
Indices: 70230859--70230904 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
70230849 GATAATGCTA
70230859 CAATTTTTATAAATTTAAAAATAT
1 CAATTTTTATAAATTTAAAAATAT
* * *
70230883 CAATTTTTTTAATTTTAGAAAT
1 CAATTTTTATAAATTTAAAAAT
70230905 TTTCCTATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.50
Consensus pattern (24 bp):
CAATTTTTATAAATTTAAAAATAT
Found at i:70234526 original size:19 final size:19
Alignment explanation
Indices: 70234502--70234540 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
70234492 TGAGTGGATT
70234502 ATAGATGATGAACAATTGA
1 ATAGATGATGAACAATTGA
70234521 ATAGATGATGAACAATTGA
1 ATAGATGATGAACAATTGA
70234540 A
1 A
70234541 GCTTGAAGCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.05, G:0.21, T:0.26
Consensus pattern (19 bp):
ATAGATGATGAACAATTGA
Found at i:70238064 original size:42 final size:42
Alignment explanation
Indices: 70238012--70238095 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 42
70238002 AACAATGTTC
* * *
70238012 AAATGATTTAATTGATGTATTTTCATAATTTAAATATTTAAT
1 AAATAATTTAATTGATATATTTTCACAATTTAAATATTTAAT
* *
70238054 AAATAATTTAATTGATATATTTTTACAATTTAAGTATTTAAT
1 AAATAATTTAATTGATATATTTTCACAATTTAAATATTTAAT
70238096 TAAGTAAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (42 bp):
AAATAATTTAATTGATATATTTTCACAATTTAAATATTTAAT
Found at i:70249594 original size:5 final size:5
Alignment explanation
Indices: 70249584--70249614 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
70249574 AATAATTAAG
70249584 TATAT TATAT TATAT TATAT TATTAT TATAT
1 TATAT TATAT TATAT TATAT TA-TAT TATAT
70249615 ATAAAAGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:70249684 original size:31 final size:30
Alignment explanation
Indices: 70249649--70249709 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
70249639 GAAACAGAAT
*
70249649 GAAAGCAAACGAAAC-AGAGAAGAACAGGGGA
1 GAAAG-AAACGAAACAAGA-AAGAAAAGGGGA
* *
70249680 GAAAGAAAGGAAAGAAGAAAGAAAAGGGGA
1 GAAAGAAACGAAACAAGAAAGAAAAGGGGA
70249710 AATAAGGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.59, C:0.07, G:0.34, T:0.00
Consensus pattern (30 bp):
GAAAGAAACGAAACAAGAAAGAAAAGGGGA
Found at i:70255781 original size:48 final size:48
Alignment explanation
Indices: 70255410--70255780 Score: 516
Period size: 48 Copynumber: 7.7 Consensus size: 48
70255400 TAAAGTACCA
* * ** *
70255410 ATGCCATGTCCTC-GACATGGTCTT--ACATGAATTCACATATCATCGTCA
1 ATGCCATGTCC-CAGACATGGTCTTACACAGGCA--CACATATCATCACCG
* * * *
70255458 ATGCCATGTCCCAAACACGGTCTTACACTGGCACACATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCACCG
*
70255506 ATGCCATGTCCCA-AGCATGGTCTTACACTGGCACACATATCATCACCG
1 ATGCCATGTCCCAGA-CATGGTCTTACACAGGCACACATATCATCACCG
*
70255554 ATGCCATGTCCCAGACATGGTCTTACATAGGCACACATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCACCG
*
70255602 ATGCCATGTCCCAGACATGGTCTTACATAGGCACACATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCACCG
* *
70255650 ATGCCATATCCCAGACATGGTCTTACACAGGCACACATCTCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCACCG
* * *
70255698 ATGCCATGACCCAGACATGGTCTTACACAGGCACATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCACCG
*
70255746 ATGCCCTGTCCCAGACATGGTCTTACACAGGCACA
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACA
70255781 TTCAGCATGG
Statistics
Matches: 297, Mismatches: 21, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
47 2 0.01
48 290 0.98
49 1 0.00
50 4 0.01
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCACCG
Found at i:70266055 original size:48 final size:44
Alignment explanation
Indices: 70265935--70266060 Score: 121
Period size: 43 Copynumber: 2.8 Consensus size: 44
70265925 GCACGTAGTA
*
70265935 AGATGCCAATGCCATATCCCAGATATGGTCTTACATGGAATCAT
1 AGATGCCAATGCCATATCCCAGATATGGTCTTACACGGAATCAT
* * ** * **
70265979 AGAT-CGAA-GCTGATAGACCAGCTATGGTCTTACACGATGTCTCAT
1 AGATGCCAATGC-CATATCCCAGATATGGTCTTACACG--GAATCAT
70266024 ATCGATGCCAATGCCATATCCCAGATATGGTCTTACA
1 A--GATGCCAATGCCATATCCCAGATATGGTCTTACA
70266061 TGGGATCACA
Statistics
Matches: 62, Mismatches: 13, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
42 2 0.03
43 23 0.37
44 4 0.06
45 6 0.10
47 3 0.05
48 22 0.35
49 2 0.03
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (44 bp):
AGATGCCAATGCCATATCCCAGATATGGTCTTACACGGAATCAT
Found at i:70266073 original size:48 final size:48
Alignment explanation
Indices: 70265936--70266080 Score: 149
Period size: 48 Copynumber: 3.1 Consensus size: 48
70265926 CACGTAGTAA
* * *
70265936 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGAATCATAGATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
* ** * * * *
70265984 GAAG-C--TG--ATAGACCAGCTATGGTCTTACACGATG-TCTCATATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATG-GGATCACATATC
70266027 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
70266075 GATGCC
1 GATGCC
70266081 CTTTTTCTTT
Statistics
Matches: 73, Mismatches: 17, Indels: 14
0.70 0.16 0.13
Matches are distributed among these distances:
43 29 0.40
44 1 0.01
45 2 0.03
46 2 0.03
47 2 0.03
48 37 0.51
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
Found at i:70272904 original size:20 final size:21
Alignment explanation
Indices: 70272879--70272918 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
70272869 CCCTTGAAAC
*
70272879 AGGGC-ACACGCTCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
70272899 AGGGCAACACGCCCGTGTGG
1 AGGGCAACACGCCCGTGTGG
70272919 TTCACTATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.20, C:0.28, G:0.40, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:70279005 original size:46 final size:47
Alignment explanation
Indices: 70278933--70279155 Score: 201
Period size: 46 Copynumber: 4.8 Consensus size: 47
70278923 TGTAACCCGC
*
70278933 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-GCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCGTTCGCAT
* *
70278979 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-G-C--GTTCGCAT
* * * * * *
70279029 -C-TCA-CGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-GCGTTCGCAT
* *** *
70279072 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGA-CATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGAGCGTTCGCAT
*
70279119 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
70279156 TGCTCAACCA
Statistics
Matches: 145, Mismatches: 20, Indels: 24
0.77 0.11 0.13
Matches are distributed among these distances:
43 2 0.01
44 1 0.01
45 3 0.02
46 65 0.45
47 63 0.43
48 3 0.02
49 2 0.01
50 3 0.02
51 3 0.02
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCGTTCGCAT
Found at i:70279041 original size:27 final size:27
Alignment explanation
Indices: 70279011--70279089 Score: 66
Period size: 27 Copynumber: 3.2 Consensus size: 27
70279001 CTCAACGAGT
70279011 TCGGATGCCTAGTTACATCTCACGAAC
1 TCGGATGCCTAGTTACATCTCACGAAC
* *
70279038 TCGGA---CTCA---AC-TC-AACGAGC
1 TCGGATGCCT-AGTTACATCTCACGAAC
*
70279058 TCGGATGCCTAGTTACATCTCTCGAAC
1 TCGGATGCCTAGTTACATCTCACGAAC
70279085 TCGGA
1 TCGGA
70279090 CTCAACTCAA
Statistics
Matches: 38, Mismatches: 5, Indels: 18
0.62 0.08 0.30
Matches are distributed among these distances:
20 10 0.26
21 2 0.05
22 3 0.08
23 2 0.05
24 2 0.05
25 3 0.08
26 2 0.05
27 14 0.37
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.24
Consensus pattern (27 bp):
TCGGATGCCTAGTTACATCTCACGAAC
Found at i:70279055 original size:47 final size:47
Alignment explanation
Indices: 70278987--70279109 Score: 228
Period size: 47 Copynumber: 2.6 Consensus size: 47
70278977 ATCCATGAGT
70278987 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* *
70279034 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
70279081 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
70279110 CATTCGCATC
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:70279131 original size:93 final size:96
Alignment explanation
Indices: 70278933--70279158 Score: 238
Period size: 93 Copynumber: 2.4 Consensus size: 96
70278923 TGTAACCCGC
* * * * *
70278933 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCGTTCGCATCCATGAGTGAACTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCGCTAGCATACATCACTGAACTCGGA
70278996 CTCAACTCAACGAGTTCGGATGCCTAGTTACAT
66 CTCAACTCAACGAGTTCGGA--CCTAGTTACAT
* * * *
70279029 -C-TCA-CGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAG-TTACATCTCTCGAACTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCGCTAGCATACATCACT-GAACTCGG
*
70279089 ACTCAACTCAACGAGTTCGGA-C-A-TTCGCAT
65 ACTCAACTCAACGAGTTCGGACCTAGTT-ACAT
* *
70279119 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC
70279159 TCAACCATCC
Statistics
Matches: 109, Mismatches: 14, Indels: 17
0.78 0.10 0.12
Matches are distributed among these distances:
89 2 0.02
90 4 0.04
91 2 0.02
92 2 0.02
93 63 0.58
94 33 0.30
95 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (96 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCGCTAGCATACATCACTGAACTCGGA
CTCAACTCAACGAGTTCGGACCTAGTTACAT
Found at i:70279174 original size:46 final size:44
Alignment explanation
Indices: 70278938--70279174 Score: 155
Period size: 47 Copynumber: 5.1 Consensus size: 44
70278928 CCCGCCCATA
* ** * *
70278938 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATG-CCAACATCC-T
70278983 GAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-CT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACATCCT
* *
70279031 CA-CGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACATC-CT
* * *
70279080 --CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCAACATCC-T
*
70279123 AAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAA-CATCCT
70279170 AGTGA
1 AGTGA
70279175 CATGTCACTT
Statistics
Matches: 159, Mismatches: 15, Indels: 34
0.76 0.07 0.16
Matches are distributed among these distances:
42 1 0.01
43 5 0.03
44 2 0.01
45 1 0.01
46 64 0.40
47 70 0.44
48 8 0.05
49 5 0.03
50 3 0.02
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACATCCT
Found at i:70280342 original size:3 final size:3
Alignment explanation
Indices: 70280334--70280360 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
70280324 GAGAGTTGGG
70280334 GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA
70280361 AAGGGAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:70286618 original size:20 final size:20
Alignment explanation
Indices: 70286593--70286632 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
70286583 AGTTAAAGAA
*
70286593 TTTAACTTCATGTAATCTAT
1 TTTAACTTCATATAATCTAT
*
70286613 TTTAACTTCCTATAATCTAT
1 TTTAACTTCATATAATCTAT
70286633 GTAGACTCTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.30, C:0.17, G:0.03, T:0.50
Consensus pattern (20 bp):
TTTAACTTCATATAATCTAT
Found at i:70287955 original size:40 final size:40
Alignment explanation
Indices: 70287861--70288045 Score: 223
Period size: 40 Copynumber: 4.6 Consensus size: 40
70287851 TATTCGAATG
*
70287861 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * *
70287902 ATAACCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* *
70287942 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
70287982 ATATCTGGGCTAAG-TCCCGAAGGCATCTGTGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
*
70288022 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
70288046 CTTGTGCAAG
Statistics
Matches: 123, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 1 0.01
40 91 0.74
41 30 0.24
42 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:70288027 original size:80 final size:81
Alignment explanation
Indices: 70287861--70288045 Score: 250
Period size: 80 Copynumber: 2.3 Consensus size: 81
70287851 TATTCGAATG
* * *
70287861 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* *
70287926 ATTTGTGCGAGTTGCT
66 ATCTGTGCGAGTTGCC
* * *
70287942 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACTATATCTGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
*
70288005 CATCTGTGCTAG-TGACC
65 CATCTGTGCGAGTTG-CC
70288022 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
70288046 CTTGTGCAAG
Statistics
Matches: 93, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
79 3 0.03
80 58 0.62
81 32 0.34
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATCTGTGCGAGTTGCC
Found at i:70300494 original size:22 final size:24
Alignment explanation
Indices: 70300449--70300494 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
70300439 TTTTTTAGAA
*
70300449 TTTTGAGTTATTTTATTATATATT
1 TTTTGAGTTATTTTATAATATATT
70300473 TTTTGAGTT-TTTTATAAT-TATT
1 TTTTGAGTTATTTTATAATATATT
70300495 AAATTATTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 4 0.19
23 8 0.38
24 9 0.43
ACGTcount: A:0.24, C:0.00, G:0.09, T:0.67
Consensus pattern (24 bp):
TTTTGAGTTATTTTATAATATATT
Found at i:70307187 original size:5 final size:5
Alignment explanation
Indices: 70307169--70307219 Score: 93
Period size: 5 Copynumber: 10.0 Consensus size: 5
70307159 TTTCTTTTAT
70307169 ATATA ATAATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA AT-ATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
70307220 CTTAATTATT
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
5 40 0.89
6 5 0.11
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:70310689 original size:60 final size:59
Alignment explanation
Indices: 70310564--70310698 Score: 148
Period size: 60 Copynumber: 2.2 Consensus size: 59
70310554 GTGTTAACTG
* * *
70310564 GGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTAACAGAGTATACTG
1 GGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGT-ACAGAGTATACTA
* * *
70310625 GGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAAGT-C-GAGATATATTA
1 GGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTAC-AGTACAGAG-TATACTA
*
70310685 GGCCTTGCCCATAT
1 GGCCTAGCCCATAT
70310699 TAACACAATT
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
59 3 0.05
60 50 0.78
61 8 0.12
62 3 0.05
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (59 bp):
GGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGTACAGAGTATACTA
Found at i:70322329 original size:63 final size:64
Alignment explanation
Indices: 70322262--70322393 Score: 248
Period size: 63 Copynumber: 2.1 Consensus size: 64
70322252 ACTACGTACA
70322262 AAATAGAAAAACAGAGAGTAGAAATTTTATGAGAAAACTCAACGTAATAAAT-GAGAATTAAGG
1 AAATAGAAAAACAGAGAGTAGAAATTTTATGAGAAAACTCAACGTAATAAATAGAGAATTAAGG
70322325 AAATAGAAAAACAGAGAGTAGAAATTTTATGAGAAAACTCAACGTAATAAATGAGAGAATTAAGG
1 AAATAGAAAAACAGAGAGTAGAAATTTTATGAGAAAACTCAACGTAATAAAT-AGAGAATTAAGG
70322390 AAAT
1 AAAT
70322394 TCGAAAAGAT
Statistics
Matches: 67, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
63 52 0.78
65 15 0.22
ACGTcount: A:0.55, C:0.06, G:0.19, T:0.20
Consensus pattern (64 bp):
AAATAGAAAAACAGAGAGTAGAAATTTTATGAGAAAACTCAACGTAATAAATAGAGAATTAAGG
Found at i:70326690 original size:84 final size:84
Alignment explanation
Indices: 70326549--70326724 Score: 298
Period size: 84 Copynumber: 2.1 Consensus size: 84
70326539 AATGATGAAA
* *
70326549 TATAACATCAAATGAAATTGAAAATAAATTTGCATCGTTTATAGCCAAAAAAATCCAAAAAATCT
1 TATAACATCAAATGAAATTAAAAATAAATTTGCACCGTTTATAGCCAAAAAAATCCAAAAAATCT
70326614 GCAAACATTCCTAAATAGT
66 GCAAACATTCCTAAATAGT
* *
70326633 TATAACATCAAATGAAATTAAAAATAAATTTGCACCGTTTATAGCCAAAAAAATCCAAAATATTT
1 TATAACATCAAATGAAATTAAAAATAAATTTGCACCGTTTATAGCCAAAAAAATCCAAAAAATCT
*
70326698 GCAAACATTCTTAAATAGT
66 GCAAACATTCCTAAATAGT
*
70326717 TCTAACAT
1 TATAACAT
70326725 TCATAATAGT
Statistics
Matches: 86, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
84 86 1.00
ACGTcount: A:0.48, C:0.15, G:0.07, T:0.29
Consensus pattern (84 bp):
TATAACATCAAATGAAATTAAAAATAAATTTGCACCGTTTATAGCCAAAAAAATCCAAAAAATCT
GCAAACATTCCTAAATAGT
Found at i:70330175 original size:55 final size:54
Alignment explanation
Indices: 70330050--70330338 Score: 253
Period size: 55 Copynumber: 5.5 Consensus size: 54
70330040 AACTTACCAT
* *
70330050 TGCCATGTCTTGACATGGTCTTACGTGGTATCC-TTGCCTTAT-GAACTCACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTA-CCTTTGCCTTATAGAACTCATCAA
* * *
70330103 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTACCTTTGCCTTATAG-AACTCATCAA
* * *
70330158 TGCCATGTCTTGACATGGTCTTACATGATTTCC-TTGCCTTATAGAACTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATG-GTACCTTTGCCTTATAGAACTCATCAA
* * * * ***
70330212 TGGCATGCCTTGGCATGGTCTTACAT-G-A--TAT-CCTTATCTTAC-CA--AA
1 TGCCATGTCTTGACATGGTCTTACATGGTACCTTTGCCTTATAGAACTCATCAA
*** *
70330258 TGCCATGTTCCAAACATGGTCTTACATGGTATCCTTAT-CC-TATAGAACTTATCAA
1 TGCCATG-TCTTGACATGGTCTTACATGGTA-CCTT-TGCCTTATAGAACTCATCAA
*
70330313 TGCCATGTCTTGGCATGGTCTTACAT
1 TGCCATGTCTTGACATGGTCTTACAT
70330339 AATATCCTTA
Statistics
Matches: 185, Mismatches: 36, Indels: 29
0.74 0.14 0.12
Matches are distributed among these distances:
46 8 0.04
47 14 0.08
48 2 0.01
49 9 0.05
50 1 0.01
52 8 0.04
53 39 0.21
54 48 0.26
55 54 0.29
56 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.35
Consensus pattern (54 bp):
TGCCATGTCTTGACATGGTCTTACATGGTACCTTTGCCTTATAGAACTCATCAA
Found at i:70330278 original size:47 final size:47
Alignment explanation
Indices: 70330225--70330400 Score: 192
Period size: 47 Copynumber: 3.6 Consensus size: 47
70330215 CATGCCTTGG
70330225 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
* * ****
70330272 CATGGTCTTACATGGTATCCTTATCCTATAGAACTTATCAATGCCATG-TCTTGG
1 CATGGTCTTACATGATATCCTTAT-CT-T---AC-CA--AATGCCATGTTCCAAA
*
70330326 CATGGTCTTACATAATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
* *
70330373 CATAGTCTTACATGGTATCCTTATCTTA
1 CATGGTCTTACATGATATCCTTATCTTA
70330401 GTGCCAATGC
Statistics
Matches: 104, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
46 9 0.09
47 50 0.48
48 3 0.03
49 3 0.03
52 3 0.03
53 3 0.03
54 24 0.23
55 9 0.09
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:70330293 original size:101 final size:101
Alignment explanation
Indices: 70330062--70330394 Score: 411
Period size: 101 Copynumber: 3.2 Consensus size: 101
70330052 CCATGTCTTG
* * *
70330062 ACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
* * * ***
70330126 CATGGGACCTTTGCCTTATAGTAACTCATCAATGCCATG-TCTTG
66 CAT--GA--TAT-CCTTAT-CTTAC-CA--AATGCCATGTTCCAA
* * *
70330170 ACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGGCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
70330235 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
66 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
* *
70330271 ACATGGTCTTACATGGTATCCTTATCC-TATAGAACTTATCAATGCCATGTCTTGGCATGGTCTT
1 ACATGGTCTTACATGGTATCCTT-GCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTT
*
70330335 ACATAATATCCTTATCTTACCAAATGCCATGTTCCAA
65 ACATGATATCCTTATCTTACCAAATGCCATGTTCCAA
*
70330372 ACATAGTCTTACATGGTATCCTT
1 ACATGGTCTTACATGGTATCCTT
70330395 ATCTTAGTGC
Statistics
Matches: 203, Mismatches: 19, Indels: 13
0.86 0.08 0.06
Matches are distributed among these distances:
100 9 0.04
101 116 0.57
102 4 0.02
103 3 0.01
104 6 0.03
105 2 0.01
107 2 0.01
108 27 0.13
109 34 0.17
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (101 bp):
ACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
Found at i:70341482 original size:27 final size:28
Alignment explanation
Indices: 70341398--70341495 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
70341388 CATGAGATTG
* * * *
70341398 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
70341427 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
70341455 GTACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
70341482 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
70341496 GACTTAATAT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 23 0.37
28 21 0.34
29 18 0.29
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:70341506 original size:27 final size:27
Alignment explanation
Indices: 70341426--70341508 Score: 87
Period size: 27 Copynumber: 3.0 Consensus size: 27
70341416 TAAATTGTAC
* *
70341426 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* * *
70341454 AGTACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
70341481 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
70341508 A
1 A
70341509 TATTTTTGAA
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
27 29 0.60
28 19 0.40
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:70341509 original size:29 final size:27
Alignment explanation
Indices: 70341398--70341510 Score: 91
Period size: 28 Copynumber: 4.0 Consensus size: 27
70341388 CATGAGATTG
** * *
70341398 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
70341427 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* * *
70341455 GTACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
70341482 GCACTGAGTGTGCGGACTTAATATATATA
1 GCACTAAGTGTGC-GACTTAAT-TATATA
70341511 TTTTTGAATC
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
27 22 0.31
28 27 0.38
29 22 0.31
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.34
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:70350605 original size:79 final size:81
Alignment explanation
Indices: 70350469--70350653 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
70350459 TTGAATGATG
* *
70350469 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
70350533 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
70350548 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
70350610 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
70350628 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70350654 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:70350667 original size:40 final size:40
Alignment explanation
Indices: 70350470--70350653 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
70350460 TGAATGATGT
* * * *
70350470 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
70350510 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
70350550 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
70350588 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
70350629 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
70350654 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:70350675 original size:79 final size:79
Alignment explanation
Indices: 70350470--70350686 Score: 192
Period size: 79 Copynumber: 2.7 Consensus size: 79
70350460 TGAATGATGT
** * * * ** *
70350470 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCAAT
*
70350533 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
70350550 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCAATTGT
*
70350615 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
70350629 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
70350687 TACGTGATTT
Statistics
Matches: 115, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
78 3 0.03
79 70 0.61
80 42 0.37
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCAATTGT
GCGAGATACTAATA
Found at i:70352116 original size:13 final size:13
Alignment explanation
Indices: 70352090--70352130 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
70352080 GCTCGACAGG
*
70352090 GACACGCTCGTGT
1 GACACGCCCGTGT
* *
70352103 GCCATGCCCGTGT
1 GACACGCCCGTGT
70352116 GACACGCCCGTGT
1 GACACGCCCGTGT
70352129 GA
1 GA
70352131 GGTGGCTTAG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.15, C:0.34, G:0.32, T:0.20
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:70353642 original size:55 final size:54
Alignment explanation
Indices: 70353517--70353702 Score: 164
Period size: 55 Copynumber: 3.4 Consensus size: 54
70353507 AACTTACTAT
* * * *
70353517 TGCCATGTCTTGACATGGTCTTACGTGGTATCC-TTGCCTTAT-GAACTAACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGGA-CCTTTGCCTTATAGAACTAATCAA
* * * *
70353570 TGTCATGCCTTGGCATGGTTTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGGACCTTTGCCTTATAG-AACTAATCAA
* ** * *
70353625 TGCCATGTCTTGACATGGTCTTACAT--GATTTAATTACCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGGACCT--TTGCCTTATAGAACTAATCAA
* * *
70353679 TGCCATGCCTCGGCATGGTTTTAC
1 TGCCATGCCTTGACATGGTCTTAC
70353703 GTGATATCCT
Statistics
Matches: 108, Mismatches: 20, Indels: 9
0.79 0.15 0.07
Matches are distributed among these distances:
52 2 0.02
53 36 0.33
54 30 0.28
55 40 0.37
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGGGACCTTTGCCTTATAGAACTAATCAA
Found at i:70353767 original size:101 final size:101
Alignment explanation
Indices: 70353637--70354271 Score: 1117
Period size: 101 Copynumber: 6.3 Consensus size: 101
70353627 CCATGTCTTG
* * * ** * *
70353637 ACATGGTCTTACATGATTTAATTACCTTATAGAACTTATCAATGCCATGCCTCGGCATGGTTTTA
1 ACATGGTCTTACATGGTATCATTTTCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
* *
70353702 CGTGATATCCTTATCTTACCAAATGCCATGTTCCAA
66 CATAATATCCTTATCTTACCAAATGCCATGTTCCAA
* *
70353738 ACATGGTCTTACATGGTATCATTTTCTTATAGAACTTATCAATGCCATGCCTCGGCATGGTTTTA
1 ACATGGTCTTACATGGTATCATTTTCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
* *
70353803 CGTGATATCCTTATCTTACCAAATGCCATGTTCCAA
66 CATAATATCCTTATCTTACCAAATGCCATGTTCCAA
70353839 ACATGGTCTTACATGGTATCATTTTCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGGTATCATTTTCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
70353904 CATAATATCCTTATCTTACCAAATGCCATGTTCCAA
66 CATAATATCCTTATCTTACCAAATGCCATGTTCCAA
70353940 ACATGGTCTTACATGGTATCATTTTCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGGTATCATTTTCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
70354005 CATAATATCCTTATCTTACCAAATGCCATGTTCCAA
66 CATAATATCCTTATCTTACCAAATGCCATGTTCCAA
70354041 ACATGGTCTTACATGGTATCATTTTCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGGTATCATTTTCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
70354106 CATAATATCCTTATCTTACCAAATGCCATGTTCCAA
66 CATAATATCCTTATCTTACCAAATGCCATGTTCCAA
70354142 ACATGGTCTTACATGGTATCATTTTCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGGTATCATTTTCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
*
70354207 CATAATATCCTTATCTTACCAAATGTCATGTTCCAA
66 CATAATATCCTTATCTTACCAAATGCCATGTTCCAA
* * *
70354243 ACATGGTCTTACATTGTATCCTTGTCTTA
1 ACATGGTCTTACATGGTATCATTTTCTTA
70354272 GTGCCAATGC
Statistics
Matches: 521, Mismatches: 13, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
101 521 1.00
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (101 bp):
ACATGGTCTTACATGGTATCATTTTCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
CATAATATCCTTATCTTACCAAATGCCATGTTCCAA
Found at i:70355091 original size:30 final size:31
Alignment explanation
Indices: 70355031--70355091 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
70355021 TCCCTAACTC
* *
70355031 AAACTTTTGCAAAATTACAATTTTGCCCCTA
1 AAACTTTTACAAAATTACAATTTTGACCCTA
* *
70355062 AAAC-TTTACAAAATTACGATTTTTACCCTA
1 AAACTTTTACAAAATTACAATTTTGACCCTA
70355092 GGCTCAGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.36
Consensus pattern (31 bp):
AAACTTTTACAAAATTACAATTTTGACCCTA
Found at i:70356252 original size:32 final size:32
Alignment explanation
Indices: 70356213--70356278 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
70356203 TGGGTGTGAC
70356213 ACATGTAAGAAATATTTATCTCATGAGAATTG
1 ACATGTAAGAAATATTTATCTCATGAGAATTG
70356245 ACATGTAAGAAATATTTATCTCATGAGAATTG
1 ACATGTAAGAAATATTTATCTCATGAGAATTG
70356277 AC
1 AC
70356279 TTTCATTTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (32 bp):
ACATGTAAGAAATATTTATCTCATGAGAATTG
Found at i:70364338 original size:57 final size:58
Alignment explanation
Indices: 70364240--70364389 Score: 178
Period size: 57 Copynumber: 2.6 Consensus size: 58
70364230 CGAGCCACTT
* * *
70364240 ATCATATAACAGGATTACTAGTCCAGGCTAAATCTTTTTTGTAATATATGCTC-AGAAGAG
1 ATCATAT--CAGGATTACCAGTCCAGGCTAAATCCTTTTTGTAACATATGCTCGAG-AGAG
* * * *
70364300 CTCA-ATTAGGATTACCAATCCAGGCTAAATCCTTTTTGTAACATATGCTCGAGAGGG
1 ATCATATCAGGATTACCAGTCCAGGCTAAATCCTTTTTGTAACATATGCTCGAGAGAG
* *
70364357 ATTATATCAAGATTACCAGTCCAGGCTAAATCC
1 ATCATATCAGGATTACCAGTCCAGGCTAAATCC
70364390 CATTAGCAAC
Statistics
Matches: 76, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
57 44 0.58
58 27 0.36
59 2 0.03
60 3 0.04
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (58 bp):
ATCATATCAGGATTACCAGTCCAGGCTAAATCCTTTTTGTAACATATGCTCGAGAGAG
Found at i:70366372 original size:15 final size:15
Alignment explanation
Indices: 70366352--70366380 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
70366342 ACTTTTCCCC
70366352 ATTACCTTCAAATTA
1 ATTACCTTCAAATTA
70366367 ATTACCTTCAAATT
1 ATTACCTTCAAATT
70366381 CAAGTACACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (15 bp):
ATTACCTTCAAATTA
Found at i:70370354 original size:32 final size:32
Alignment explanation
Indices: 70370313--70370376 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
70370303 CAATATGAGG
70370313 CAATGGATACTTGTTCTTTATTGTAACTTTGT
1 CAATGGATACTTGTTCTTTATTGTAACTTTGT
*
70370345 CAATGGATACTTGTTCTTTTTTGTAACTTTGT
1 CAATGGATACTTGTTCTTTATTGTAACTTTGT
70370377 TGAGTTGTCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.20, C:0.12, G:0.16, T:0.52
Consensus pattern (32 bp):
CAATGGATACTTGTTCTTTATTGTAACTTTGT
Found at i:70371905 original size:43 final size:43
Alignment explanation
Indices: 70371815--70371935 Score: 129
Period size: 43 Copynumber: 2.8 Consensus size: 43
70371805 AGATGTGATT
* ** * ***
70371815 ACATGTAGGACCATGTCTAAGACATTGGCATTGTATTGTGTTT
1 ACATGTAAGACCATGTCTGGGACATTGGCATCGTATTGTGAAA
70371858 ACATGTAAGACCATGTCTGGGACATTGGCATCG-ATATGTGAAA
1 ACATGTAAGACCATGTCTGGGACATTGGCATCGTAT-TGTGAAA
* * *
70371901 ACATGTAAGACCATATCTGGGATA-TGGCATTGTAT
1 ACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
70371936 GAGCTATATG
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
42 9 0.14
43 57 0.86
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (43 bp):
ACATGTAAGACCATGTCTGGGACATTGGCATCGTATTGTGAAA
Found at i:70379382 original size:48 final size:48
Alignment explanation
Indices: 70379330--70379472 Score: 178
Period size: 48 Copynumber: 3.0 Consensus size: 48
70379320 ACGATGTCTC
** * * * *
70379330 ATATCGATGCCAATGCCACATCCCAAATATAGTCTTACATTGGATCAA
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAA
* * * *
70379378 ATATCAACGCCAATGCGATGTCCCAGACATGGTCTTACATGGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAA
* *
70379426 ATACCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
70379473 CACATAACCC
Statistics
Matches: 80, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 80 1.00
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (48 bp):
ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAA
Found at i:70386750 original size:32 final size:32
Alignment explanation
Indices: 70386709--70386772 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
70386699 CAATACGAGG
*
70386709 CAATGGATACTTGTTTTTTATTGTAACTTTGT
1 CAATGGATACTTGTTCTTTATTGTAACTTTGT
70386741 CAATGGATACTTGTTCTTTATTGTAACTTTGT
1 CAATGGATACTTGTTCTTTATTGTAACTTTGT
70386773 TGAGTTGTCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.22, C:0.11, G:0.16, T:0.52
Consensus pattern (32 bp):
CAATGGATACTTGTTCTTTATTGTAACTTTGT
Found at i:70389123 original size:21 final size:22
Alignment explanation
Indices: 70389077--70389124 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
70389067 TGCAGAGCTT
**
70389077 ACACGCCCGTGTGGTCCAAGGG
1 ACACGCCCGTGTGACCCAAGGG
*
70389099 ACACGCCCGTGTGACCCTA-GG
1 ACACGCCCGTGTGACCCAAGGG
70389120 ACACG
1 ACACG
70389125 GTCGTGTTCG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 7 0.30
22 16 0.70
ACGTcount: A:0.21, C:0.35, G:0.31, T:0.12
Consensus pattern (22 bp):
ACACGCCCGTGTGACCCAAGGG
Found at i:70389591 original size:31 final size:31
Alignment explanation
Indices: 70389556--70389619 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
70389546 AAATTTTAAC
*
70389556 ATCTAAATATGGTACAACAAAACATACACAT
1 ATCTAAATATGATACAACAAAACATACACAT
*
70389587 ATCTAAATATGATATAACAAAACATACACAT
1 ATCTAAATATGATACAACAAAACATACACAT
70389618 AT
1 AT
70389620 GTTTATAATC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.53, C:0.17, G:0.05, T:0.25
Consensus pattern (31 bp):
ATCTAAATATGATACAACAAAACATACACAT
Found at i:70390467 original size:59 final size:58
Alignment explanation
Indices: 70390333--70390471 Score: 147
Period size: 58 Copynumber: 2.4 Consensus size: 58
70390323 CATATAACAG
* * * * * * *
70390333 GATTACCAATTCACGCTAAAT-CTTTTTTGTAATATATGCTCAGAAGAGCTCAATTAG
1 GATTACCAGTCCAGGCTAAATCCTTTTTTGTAACATATGCTCAGAAGAGATCAATCAA
* * * *
70390390 GATTACTAGTGCAGGCTAAATCCTTTTTTGTAACATATGCTC-GAGAGGGATTATATCAA
1 GATTACCAGTCCAGGCTAAATCCTTTTTTGTAACATATGCTCAGA-AGAGATCA-ATCAA
70390449 GATTACCAGTCCAGGCTAAATCC
1 GATTACCAGTCCAGGCTAAATCC
70390472 CGTCAGCAAC
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
57 19 0.28
58 24 0.36
59 24 0.36
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (58 bp):
GATTACCAGTCCAGGCTAAATCCTTTTTTGTAACATATGCTCAGAAGAGATCAATCAA
Found at i:70417064 original size:22 final size:22
Alignment explanation
Indices: 70417031--70417085 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
70417021 TATGAAAATA
*
70417031 ATACTATGTATAA-AAGTATATAT
1 ATACTA-GTATAATAA-AATATAT
*
70417054 ATACTCGTATAATAAAATATAT
1 ATACTAGTATAATAAAATATAT
70417076 ATACTAGTAT
1 ATACTAGTAT
70417086 TAACAATATA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
22 21 0.75
23 7 0.25
ACGTcount: A:0.47, C:0.07, G:0.07, T:0.38
Consensus pattern (22 bp):
ATACTAGTATAATAAAATATAT
Found at i:70417428 original size:3 final size:3
Alignment explanation
Indices: 70417422--70417977 Score: 224
Period size: 3 Copynumber: 183.7 Consensus size: 3
70417412 ATAGCGAATG
* * *
70417422 TAA TAA TAA TAA TAA TAA TAT TAA GT-A TAG T-A TAAA TAA TATG TACA
1 TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA T-AA TAA TA-A TA-A
* * *
70417469 TAA CAG TAA TAA TAA TAA GTAA CAA TAA TAA TAA TAA T-A TAGA -AA
1 TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TA-A TAA
* *
70417514 TTCAA -AA -AA GTAA -ACA TAA T-A TAA TGA TAT TAA -AA TAA -AA T-A
1 -T-AA TAA TAA -TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
70417556 TACA CTAA TAT TTA TAAA TAA TAA TAA TAA -ATA TAA TAA TAA TAA TAA
1 TA-A -TAA TAA TAA T-AA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA
* * * * *
70417604 TGA TAA TAA TAA TAT TAA GT-A TAG T-A TAAA TAA TATG TACA TAA CAA
1 TAA TAA TAA TAA TAA TAA -TAA TAA TAA T-AA TAA TA-A TA-A TAA TAA
* * * *
70417651 TAA TAA TAA TAA GTAA CAA CAG TAA CAA TAA TAA TAA T-A TAGA -AA
1 TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA
* * *
70417696 TTCAA AAA AAA CTAA -ACA TAA T-A TAA TAA TAT TAA -AA TAA -AA TAA
1 -T-AA TAA TAA -TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
70417741 T-T TAA -AA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-A TAGA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA
* * *
70417783 TTCAA -AA AAA GTAA -ACA TAA T-A TAA TGA TAT TAA -AA TAA -AA T-A
1 -T-AA TAA TAA -TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
70417826 TACA CTAA TAT TTA TAAA TAA TAA TAG TAA -ATA TAA TAA TAA TAA TAA
1 TA-A -TAA TAA TAA T-AA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA
* *
70417874 TAA TAA TAA TAA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAT TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
70417922 GT-A TAG T-A TAAA TAA TATG TACA TAA CAA TAA TAA TAA GTAA CAA
1 -TAA TAA TAA T-AA TAA TA-A TA-A TAA TAA TAA TAA TAA -TAA TAA
70417967 TAA TAA TAA TA
1 TAA TAA TAA TA
70417978 TAGAAATTTC
Statistics
Matches: 418, Mismatches: 68, Indels: 134
0.67 0.11 0.22
Matches are distributed among these distances:
2 51 0.12
3 305 0.73
4 52 0.12
5 10 0.02
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:70417497 original size:19 final size:19
Alignment explanation
Indices: 70417469--70417505 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
70417459 AATATGTACA
*
70417469 TAACAGTAATAATAATAAG
1 TAACAATAATAATAATAAG
70417488 TAACAATAATAATAATAA
1 TAACAATAATAATAATAA
70417506 TATAGAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.27
Consensus pattern (19 bp):
TAACAATAATAATAATAAG
Found at i:70417740 original size:87 final size:85
Alignment explanation
Indices: 70417644--70417825 Score: 258
Period size: 86 Copynumber: 2.1 Consensus size: 85
70417634 TAATATGTAC
*
70417644 ATAACAATAA-TAATAATAAGTAACAACAGTAACAATAATAATAATATAGAAATTCAAAAAAAAC
1 ATAA-AATAATTAA-AATAA-TAACAACAATAACAATAATAATAATATAGAAATTC-AAAAAAAC
70417708 TAAACATAATATAATAATATTAAA
62 TAAACATAATATAATAATATTAAA
* * * *
70417732 ATAAAATAATTTAAAATAATAATAATAATAATAATAATAATAATATAGAAATTCAAAAAAAGTAA
1 ATAAAATAA-TTAAAATAATAACAACAATAACAATAATAATAATATAGAAATTCAAAAAAACTAA
*
70417797 ACATAATATAATGATATTAAA
65 ACATAATATAATAATATTAAA
70417818 ATAAAATA
1 ATAAAATA
70417826 TACACTAATA
Statistics
Matches: 86, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
86 38 0.44
87 36 0.42
88 9 0.10
89 3 0.03
ACGTcount: A:0.64, C:0.05, G:0.03, T:0.27
Consensus pattern (85 bp):
ATAAAATAATTAAAATAATAACAACAATAACAATAATAATAATATAGAAATTCAAAAAAACTAAA
CATAATATAATAATATTAAA
Found at i:70417863 original size:87 final size:87
Alignment explanation
Indices: 70417476--70417829 Score: 314
Period size: 87 Copynumber: 4.0 Consensus size: 87
70417466 ACATAACAGT
* *
70417476 AATAATAATAAGTAACAATAATAATAATAATATAGAAATTC--AAAAAAGTAAACATAATATAAT
1 AATAATAATAA-TAATAATAATAATAATAATATAGAAATTCAAAAAAAACTAAACATAATATAAT
*
70417539 GATATTAAAATAAAAT-ATACACTA
65 AATATTAAAATAAAATAATACA--A
* * * **
70417563 ATATTTATAAATAATAATAATAA-ATATAATAATAATA-ATAATGAT-AATAATAATATTAAGTA
1 A-A-TAAT-AATAATAATAATAATA-ATAATAAT-ATAGA-AAT--TCAA-AA-AAAACTAAACA
* * *
70417625 TAGTATAAATAATATGT-ACATAACAATAATA-AT
56 TAATAT-AATAATAT-TAAAATAA-AATAATACAA
* * * *
70417658 AATAAGTAACAACAGTAACAATAATAATAATATAGAAATTCAAAAAAAACTAAACATAATATAAT
1 AATAA-TAATAATAATAATAATAATAATAATATAGAAATTCAAAAAAAACTAAACATAATATAAT
**
70417723 AATATTAAAATAAAATAATTTAA
65 AATATTAAAATAAAATAATACAA
* *
70417746 AATAATAATAATAATAATAATAATAATAATATAGAAATTC-AAAAAAAGTAAACATAATATAATG
1 AATAATAATAATAATAATAATAATAATAATATAGAAATTCAAAAAAAACTAAACATAATATAATA
70417810 ATATTAAAATAAAAT-ATACA
66 ATATTAAAATAAAATAATACA
70417830 CTAATATTTA
Statistics
Matches: 214, Mismatches: 31, Indels: 46
0.74 0.11 0.16
Matches are distributed among these distances:
85 3 0.01
86 37 0.17
87 39 0.18
88 21 0.10
89 32 0.15
90 14 0.07
91 2 0.01
92 7 0.03
93 21 0.10
94 5 0.02
95 13 0.06
96 12 0.06
97 5 0.02
98 3 0.01
ACGTcount: A:0.62, C:0.05, G:0.04, T:0.30
Consensus pattern (87 bp):
AATAATAATAATAATAATAATAATAATAATATAGAAATTCAAAAAAAACTAAACATAATATAATA
ATATTAAAATAAAATAATACAA
Found at i:70418036 original size:16 final size:16
Alignment explanation
Indices: 70418003--70418035 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
70417993 AACTAAACAT
*
70418003 AATATAATAATATTAA
1 AATAAAATAATATTAA
70418019 AATAAAATAAT-TTAA
1 AATAAAATAATATTAA
70418034 AA
1 AA
70418036 AATACTATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AATAAAATAATATTAA
Found at i:70421457 original size:25 final size:25
Alignment explanation
Indices: 70421423--70421504 Score: 110
Period size: 25 Copynumber: 3.3 Consensus size: 25
70421413 CGGACACACC
70421423 ACAGCTCTTATGAACTTCCTGTTAT
1 ACAGCTCTTATGAACTTCCTGTTAT
*
70421448 ACAGCTCTTATGAACTTCCTGTTAG
1 ACAGCTCTTATGAACTTCCTGTTAT
** * * *
70421473 ACAGCTCACATGAGCTTTCTATTAT
1 ACAGCTCTTATGAACTTCCTGTTAT
70421498 ACAGCTC
1 ACAGCTC
70421505 ACATGAGCTT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 50 1.00
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.35
Consensus pattern (25 bp):
ACAGCTCTTATGAACTTCCTGTTAT
Found at i:70421505 original size:25 final size:25
Alignment explanation
Indices: 70421444--70421539 Score: 102
Period size: 25 Copynumber: 3.8 Consensus size: 25
70421434 GAACTTCCTG
** * * *
70421444 TTATACAGCTCTTATGAACTTCCTG
1 TTATACAGCTCACATGAGCTTTCTA
*
70421469 TTAGACAGCTCACATGAGCTTTCTA
1 TTATACAGCTCACATGAGCTTTCTA
*
70421494 TTATACAGCTCACATGAGCTTTCCA
1 TTATACAGCTCACATGAGCTTTCTA
** *
70421519 TTATTTAGCTCGCATGAGCTT
1 TTATACAGCTCACATGAGCTT
70421540 CCCGTTATTC
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 60 1.00
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (25 bp):
TTATACAGCTCACATGAGCTTTCTA
Found at i:70421547 original size:25 final size:25
Alignment explanation
Indices: 70421475--70421548 Score: 85
Period size: 25 Copynumber: 3.0 Consensus size: 25
70421465 CCTGTTAGAC
* * **
70421475 AGCTCACATGAGCTTTCTATTATAC
1 AGCTCACATGAGCTTCCCATTATTT
*
70421500 AGCTCACATGAGCTTTCCATTATTT
1 AGCTCACATGAGCTTCCCATTATTT
* *
70421525 AGCTCGCATGAGCTTCCCGTTATT
1 AGCTCACATGAGCTTCCCATTATT
70421549 CATCTTGGAG
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.36
Consensus pattern (25 bp):
AGCTCACATGAGCTTCCCATTATTT
Found at i:70432577 original size:25 final size:25
Alignment explanation
Indices: 70432549--70432621 Score: 96
Period size: 25 Copynumber: 3.0 Consensus size: 25
70432539 CACAGCTCTT
70432549 ATGAGCTTCCCGTTATATAGCTCGC
1 ATGAGCTTCCCGTTATATAGCTCGC
*
70432574 ATGAGCTTCCCGTTAT-TCAGCTCGG
1 ATGAGCTTCCCGTTATAT-AGCTCGC
* *
70432599 AGGAGCTTCCTGTT-TATAGCTCG
1 ATGAGCTTCCCGTTATATAGCTCG
70432622 TATAAGCATA
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
24 8 0.19
25 35 0.81
ACGTcount: A:0.18, C:0.26, G:0.23, T:0.33
Consensus pattern (25 bp):
ATGAGCTTCCCGTTATATAGCTCGC
Found at i:70439459 original size:34 final size:34
Alignment explanation
Indices: 70439421--70439490 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 34
70439411 AGTCAAACAG
*
70439421 TGAAACAGGGGAAACTTTAAGAAAAATATGGTAT
1 TGAAACAGAGGAAACTTTAAGAAAAATATGGTAT
*
70439455 TGAAACAGAGGAAACTTTAAGAAAAATCTGGTAT
1 TGAAACAGAGGAAACTTTAAGAAAAATATGGTAT
70439489 TG
1 TG
70439491 TTTGGCAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.46, C:0.07, G:0.23, T:0.24
Consensus pattern (34 bp):
TGAAACAGAGGAAACTTTAAGAAAAATATGGTAT
Found at i:70440255 original size:39 final size:39
Alignment explanation
Indices: 70440201--70440326 Score: 207
Period size: 39 Copynumber: 3.2 Consensus size: 39
70440191 TTCAGTGATG
70440201 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
70440240 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * * *
70440279 TATATCCGGACTTAAGGTCCGTAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
70440318 TATGTCCGG
1 TATATCCGG
70440327 GCTAAAGTCC
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 82 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:70440344 original size:39 final size:39
Alignment explanation
Indices: 70440201--70440370 Score: 200
Period size: 39 Copynumber: 4.4 Consensus size: 39
70440191 TTCAGTGATG
* *
70440201 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
* *
70440240 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
* *
70440279 TATATCCGGACTTAAGGTCCGTAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
* * * * * *
70440318 TATGTCCGGGC-TAAAGTCCCGCAGGCTTCGAGCTGGTAT
1 TATATCCGGACTTAAGGT-CCGCAGGCTACGTGCTGGAAT
*
70440357 TATA-CCGGATTTAA
1 TATATCCGGACTTAA
70440371 ATTCCCGCAG
Statistics
Matches: 114, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
38 9 0.08
39 105 0.92
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
Found at i:70444329 original size:24 final size:24
Alignment explanation
Indices: 70444302--70444369 Score: 67
Period size: 24 Copynumber: 3.1 Consensus size: 24
70444292 TATTAAGCAG
70444302 ATGTCCATTATTATAAGAAGTTTA
1 ATGTCCATTATTATAAGAAGTTTA
* *
70444326 ATGT--ACT-TTAT---AATTTTA
1 ATGTCCATTATTATAAGAAGTTTA
*
70444344 ATATCCATTATTATAAGAAGTTTA
1 ATGTCCATTATTATAAGAAGTTTA
70444368 AT
1 AT
70444370 ATACTTTATG
Statistics
Matches: 33, Mismatches: 5, Indels: 12
0.66 0.10 0.24
Matches are distributed among these distances:
18 9 0.27
20 2 0.06
21 8 0.24
22 2 0.06
24 12 0.36
ACGTcount: A:0.38, C:0.07, G:0.09, T:0.46
Consensus pattern (24 bp):
ATGTCCATTATTATAAGAAGTTTA
Found at i:70444352 original size:42 final size:42
Alignment explanation
Indices: 70444305--70444391 Score: 156
Period size: 42 Copynumber: 2.1 Consensus size: 42
70444295 TAAGCAGATG
*
70444305 TCCATTATTATAAGAAGTTTAATGTACTTTATAATTTTAATA
1 TCCATTATTATAAGAAGTTTAATATACTTTATAATTTTAATA
*
70444347 TCCATTATTATAAGAAGTTTAATATACTTTATGATTTTAATA
1 TCCATTATTATAAGAAGTTTAATATACTTTATAATTTTAATA
70444389 TCC
1 TCC
70444392 TCTAGAAATA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.37, C:0.09, G:0.07, T:0.47
Consensus pattern (42 bp):
TCCATTATTATAAGAAGTTTAATATACTTTATAATTTTAATA
Found at i:70444378 original size:21 final size:21
Alignment explanation
Indices: 70444312--70444378 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
70444302 ATGTCCATTA
*
70444312 TTATAAGAAGTTTAATGTACT
1 TTATAAGAAGTTTAATATACT
* *
70444333 TTAT---AATTTTAATATCCATT
1 TTATAAGAAGTTTAATAT--ACT
70444353 ATTATAAGAAGTTTAATATACT
1 -TTATAAGAAGTTTAATATACT
70444375 TTAT
1 TTAT
70444379 GATTTTAATA
Statistics
Matches: 35, Mismatches: 5, Indels: 12
0.67 0.10 0.23
Matches are distributed among these distances:
18 9 0.26
20 2 0.06
21 12 0.34
22 2 0.06
24 10 0.29
ACGTcount: A:0.39, C:0.06, G:0.07, T:0.48
Consensus pattern (21 bp):
TTATAAGAAGTTTAATATACT
Found at i:70444865 original size:16 final size:16
Alignment explanation
Indices: 70444844--70444874 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
70444834 GATTTATAGG
70444844 TGTAAGCTTAGGTAAT
1 TGTAAGCTTAGGTAAT
70444860 TGTAAGCTTAGGTAA
1 TGTAAGCTTAGGTAA
70444875 GGACGTTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.35
Consensus pattern (16 bp):
TGTAAGCTTAGGTAAT
Found at i:70446183 original size:23 final size:24
Alignment explanation
Indices: 70446144--70446188 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
70446134 CTAATCTGTT
*
70446144 ATTCGAATTGTAAAATTCAAATCA
1 ATTCGAACTGTAAAATTCAAATCA
70446168 ATTCGAACT-TAAAATTCAAAT
1 ATTCGAACTGTAAAATTCAAAT
70446189 TAATAATTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.47, C:0.13, G:0.07, T:0.33
Consensus pattern (24 bp):
ATTCGAACTGTAAAATTCAAATCA
Found at i:70448833 original size:102 final size:102
Alignment explanation
Indices: 70448639--70448834 Score: 293
Period size: 102 Copynumber: 1.9 Consensus size: 102
70448629 CTAGTTACTA
* * *
70448639 AAGTGAATGGCAGATACTGTGTATGGTATGCCATGTGCATGATGTTGTGTATGTCATATTTATTG
1 AAGTGAATGGCAGATACTGTGCATGGTATGCCATGTGCATGATGCTGTATATGTCATATTTATTG
* * ** *
70448704 TTTGTTGTATATGCTGCTATGTTTGTCATTTGTTATT
66 TTTATTGCATAAACTGCTATGTATGTCATTTGTTATT
*
70448741 AAGTGAATGGCAGATACTGTGCATGGTATGCCATGTGCATGATGCTGTATATGTCATGTTTATTG
1 AAGTGAATGGCAGATACTGTGCATGGTATGCCATGTGCATGATGCTGTATATGTCATATTTATTG
* *
70448806 TTTATTGCATAAACTGTTGTGTATGTCAT
66 TTTATTGCATAAACTGCTATGTATGTCAT
70448835 GTTTATTGTT
Statistics
Matches: 83, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
102 83 1.00
ACGTcount: A:0.22, C:0.10, G:0.24, T:0.43
Consensus pattern (102 bp):
AAGTGAATGGCAGATACTGTGCATGGTATGCCATGTGCATGATGCTGTATATGTCATATTTATTG
TTTATTGCATAAACTGCTATGTATGTCATTTGTTATT
Found at i:70452124 original size:5 final size:5
Alignment explanation
Indices: 70452114--70452158 Score: 81
Period size: 5 Copynumber: 9.0 Consensus size: 5
70452104 GATACCAACC
*
70452114 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATGAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA
70452159 TTTTTATTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 38 1.00
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:70452430 original size:9 final size:9
Alignment explanation
Indices: 70452416--70452502 Score: 95
Period size: 9 Copynumber: 9.7 Consensus size: 9
70452406 ATAAGTATAA
*
70452416 AATTAACTG
1 AATTAACCG
70452425 AATTAACCG
1 AATTAACCG
* *
70452434 AATCAATCG
1 AATTAACCG
70452443 AATTAACCG
1 AATTAACCG
*
70452452 AATTACCCG
1 AATTAACCG
70452461 AATT-ACCTG
1 AATTAACC-G
* *
70452470 AATTACCCA
1 AATTAACCG
70452479 AATTAACCG
1 AATTAACCG
*
70452488 AATTAACCA
1 AATTAACCG
70452497 AATTAA
1 AATTAA
70452503 TCAAATTATT
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
8 2 0.03
9 60 0.94
10 2 0.03
ACGTcount: A:0.45, C:0.22, G:0.08, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:70452544 original size:5 final size:6
Alignment explanation
Indices: 70452527--70452575 Score: 71
Period size: 6 Copynumber: 7.8 Consensus size: 6
70452517 TAAAATTATA
*
70452527 TATTTT TATTTT TATTTT TATTTT TAGTTTT AGATTTT TATTTT TATTT
1 TATTTT TATTTT TATTTT TATTTT TA-TTTT -TATTTT TATTTT TATTT
70452576 ATTAAATTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
6 30 0.77
7 8 0.21
8 1 0.03
ACGTcount: A:0.18, C:0.00, G:0.04, T:0.78
Consensus pattern (6 bp):
TATTTT
Found at i:70454066 original size:102 final size:102
Alignment explanation
Indices: 70453909--70454111 Score: 397
Period size: 102 Copynumber: 2.0 Consensus size: 102
70453899 ACTGGAATAA
70453909 AGTGTACAGACTTCGTTAAATGATCGACAATTTACCAGACGACATCTTTCTTTTTCGGTGATAAA
1 AGTGTACAGACTTCGTTAAATGATCGACAATTTACCAGACGACATCTTTCTTTTTCGGTGATAAA
70453974 GGTAATCCCATTACAAAGTCCATGGTAACTCTTTCCT
66 GGTAATCCCATTACAAAGTCCATGGTAACTCTTTCCT
70454011 AGTGTACAGACTTCGTTAAATGATCGACAATTTACCAGACGACATCTTTCTTTTTCGGTGATAAA
1 AGTGTACAGACTTCGTTAAATGATCGACAATTTACCAGACGACATCTTTCTTTTTCGGTGATAAA
*
70454076 GGTAATCCCATTACAAAGTCCATGGTATCTCTTTCC
66 GGTAATCCCATTACAAAGTCCATGGTAACTCTTTCC
70454112 CATTTCCATT
Statistics
Matches: 100, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
102 100 1.00
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (102 bp):
AGTGTACAGACTTCGTTAAATGATCGACAATTTACCAGACGACATCTTTCTTTTTCGGTGATAAA
GGTAATCCCATTACAAAGTCCATGGTAACTCTTTCCT
Found at i:70458097 original size:30 final size:30
Alignment explanation
Indices: 70458053--70458125 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 30
70458043 GTGCAGGGCT
* * *
70458053 CACACGCCTGTGTGGTTGGGCCGTGCACTA
1 CACACGCCCGTGTGGTCGGCCCGTGCACTA
* *
70458083 CACGCGCCCGTGTGGTCGGCCCGTGTACTA
1 CACACGCCCGTGTGGTCGGCCCGTGCACTA
*
70458113 CACACGTCCGTGT
1 CACACGCCCGTGT
70458126 CCCTAACCCG
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.12, C:0.34, G:0.32, T:0.22
Consensus pattern (30 bp):
CACACGCCCGTGTGGTCGGCCCGTGCACTA
Found at i:70458439 original size:42 final size:42
Alignment explanation
Indices: 70458361--70458441 Score: 101
Period size: 42 Copynumber: 1.9 Consensus size: 42
70458351 ATGTAGGGGG
*
70458361 CACACGGCCGGACCACATGCCCATGGGACAAGCCGTGTGTTA
1 CACACGGCCGGACCACATGCCCATGGGACAACCCGTGTGTTA
* * * *
70458403 CACACGGCCATGA-CACATGCCCATGTGTCTACCCGTGTG
1 CACACGGCC-GGACCACATGCCCATGGGACAACCCGTGTG
70458442 GACAAAATAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
42 31 0.94
43 2 0.06
ACGTcount: A:0.22, C:0.35, G:0.26, T:0.17
Consensus pattern (42 bp):
CACACGGCCGGACCACATGCCCATGGGACAACCCGTGTGTTA
Found at i:70463284 original size:33 final size:31
Alignment explanation
Indices: 70463242--70463322 Score: 110
Period size: 30 Copynumber: 2.5 Consensus size: 31
70463232 TAAATTGTTT
70463242 TTGTATTGGTTATTGTCTGTCATGTTGTATTAAA
1 TTGT-TTGGTTATTGTCT-T-ATGTTGTATTAAA
*
70463276 TTGTTTGGTCATTG-CTTATGTTGTATTAAA
1 TTGTTTGGTTATTGTCTTATGTTGTATTAAA
*
70463306 TTGTTTGGTTGTTGTCT
1 TTGTTTGGTTATTGTCT
70463323 ACCTTTATTG
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
30 25 0.58
31 3 0.07
32 2 0.05
33 9 0.21
34 4 0.09
ACGTcount: A:0.16, C:0.06, G:0.22, T:0.56
Consensus pattern (31 bp):
TTGTTTGGTTATTGTCTTATGTTGTATTAAA
Found at i:70463452 original size:15 final size:15
Alignment explanation
Indices: 70463392--70463461 Score: 52
Period size: 15 Copynumber: 4.7 Consensus size: 15
70463382 GAAGAAGAAA
**
70463392 TGTCTGATTTTGATG
1 TGTCTGATAGTGATG
* *
70463407 TGTCTGATAGTTATC
1 TGTCTGATAGTGATG
** *
70463422 TCCCT-ATTAATGATG
1 TGTCTGA-TAGTGATG
70463437 TGTCTGATAGTGATG
1 TGTCTGATAGTGATG
*
70463452 TGTCTAATAG
1 TGTCTGATAG
70463462 GATATGTGTT
Statistics
Matches: 40, Mismatches: 13, Indels: 4
0.70 0.23 0.07
Matches are distributed among these distances:
14 1 0.03
15 38 0.95
16 1 0.03
ACGTcount: A:0.21, C:0.11, G:0.23, T:0.44
Consensus pattern (15 bp):
TGTCTGATAGTGATG
Found at i:70466395 original size:14 final size:16
Alignment explanation
Indices: 70466361--70466397 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
70466351 TGGCCTGGCT
70466361 GTGTGTGTCACAGGCC
1 GTGTGTGTCACAGGCC
*
70466377 GTGTGTGTCACAGGCT
1 GTGTGTGTCACAGGCC
70466393 GTGTG
1 GTGTG
70466398 GACATTCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.11, C:0.19, G:0.41, T:0.30
Consensus pattern (16 bp):
GTGTGTGTCACAGGCC
Found at i:70479931 original size:42 final size:42
Alignment explanation
Indices: 70479828--70479937 Score: 125
Period size: 43 Copynumber: 2.6 Consensus size: 42
70479818 CTTACCAATG
** *
70479828 CCATATCCCAGATATGGTCTTACATGTAATCTCGTATCGATA
1 CCATATCCCAGATATGGTCTTACATCAAATCTCATATCGATA
* * *
70479870 CCAATAACCCAGCTATGGTCTTACA-CAAAGTCTCATATTGATGA
1 CC-ATATCCCAGATATGGTCTTACATCAAA-TCTCATATCGAT-A
70479914 -CATATCCCAGATATGGTCTTACAT
1 CCATATCCCAGATATGGTCTTACAT
70479938 GTAGCCTCAG
Statistics
Matches: 56, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
42 24 0.43
43 31 0.55
44 1 0.02
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.31
Consensus pattern (42 bp):
CCATATCCCAGATATGGTCTTACATCAAATCTCATATCGATA
Found at i:70486261 original size:24 final size:25
Alignment explanation
Indices: 70486216--70486262 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
70486206 ATTTTTGATT
*
70486216 TTGATGAATATTTTGAGTTATGTCA
1 TTGATGAATATTTTGAGCTATGTCA
70486241 TTGATGAATA-TTTGAGCTATGT
1 TTGATGAATATTTTGAGCTATGT
70486263 GATGTTAGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.28, C:0.04, G:0.21, T:0.47
Consensus pattern (25 bp):
TTGATGAATATTTTGAGCTATGTCA
Found at i:70493345 original size:26 final size:26
Alignment explanation
Indices: 70493316--70493423 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
70493306 TGGTACAAAT
70493316 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
** *
70493342 TGATAATGAATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
70493368 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
70493394 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
70493420 TGAT
1 TGAT
70493424 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.33, C:0.06, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:70500187 original size:32 final size:32
Alignment explanation
Indices: 70500151--70500215 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
70500141 TGTATGCATT
70500151 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
70500183 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
70500215 T
1 T
70500216 GGTAAGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:70504113 original size:24 final size:25
Alignment explanation
Indices: 70504068--70504114 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
70504058 ATTTTTGATT
*
70504068 TTGATGAATATTTTGAGTTATGTCA
1 TTGATGAATATTTTGAGCTATGTCA
70504093 TTGATGAATA-TTTGAGCTATGT
1 TTGATGAATATTTTGAGCTATGT
70504115 GTTGTTTGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.28, C:0.04, G:0.21, T:0.47
Consensus pattern (25 bp):
TTGATGAATATTTTGAGCTATGTCA
Found at i:70504778 original size:45 final size:45
Alignment explanation
Indices: 70504717--70504837 Score: 127
Period size: 45 Copynumber: 2.7 Consensus size: 45
70504707 TAGGATTCCA
* *
70504717 ATATGTGTTTTTGTGTAAGACCATCTCTGGGACGTTGGCATCAAT
1 ATATGTGTTTTCGTGTAAGACCATCTCTGGGACATTGGCATCAAT
* * *
70504762 ATATGTGTTTTCGTGTAAGACCA-CATTTGAGACATTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCATC-TCTGGGACATTGGCATCAAT
* * * * * *
70504807 ATATTTGGTTACATATAAGACCATGTCTGGG
1 ATATGTGTTTTCGTGTAAGACCATCTCTGGG
70504838 TCATCAGCAT
Statistics
Matches: 61, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
44 1 0.02
45 60 0.98
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (45 bp):
ATATGTGTTTTCGTGTAAGACCATCTCTGGGACATTGGCATCAAT
Found at i:70505667 original size:16 final size:16
Alignment explanation
Indices: 70505643--70505692 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
70505633 GCTTAACTTC
*
70505643 TATGCTTGAATTTGGT
1 TATGTTTGAATTTGGT
*
70505659 TATGTTTGAATATGGTT
1 TATGTTTGAATTTGG-T
*
70505676 TAAGTTT--ATTTGGT
1 TATGTTTGAATTTGGT
70505690 TAT
1 TAT
70505693 AATGCTACGT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
14 3 0.11
15 5 0.18
16 13 0.46
17 7 0.25
ACGTcount: A:0.22, C:0.02, G:0.22, T:0.54
Consensus pattern (16 bp):
TATGTTTGAATTTGGT
Found at i:70509395 original size:54 final size:52
Alignment explanation
Indices: 70509329--70509640 Score: 293
Period size: 54 Copynumber: 5.8 Consensus size: 52
70509319 AGTGGTTTTA
* * * * * *
70509329 CGGTCATTTTACACTATAGGGGTATTATGATCATTTTACAAATCGGGGGTATTT
1 CGGTAATTTTACA-AATAGGGGTATT-TGGTAATCTTACAAACCGGGGGTATTT
* * ** *
70509383 CGGTAGTCTTACAAACCGGGGGTATTTCGGTAGTCTTACAAACCGGGGGTATTT
1 CGGTAATTTTACAAA-TAGGGGTATTT-GGTAATCTTACAAACCGGGGGTATTT
* ** *
70509437 CGATAATTTTACAAACTAGGGGTATTTCGGTAATCTTACAAACTAGAGGTATTT
1 CGGTAATTTTACAAA-TAGGGGTATTT-GGTAATCTTACAAACCGGGGGTATTT
* * * *
70509491 CGGTAATTTTACAAATTGGGGTATTTCAGTAATTTTACAAATCGGGGGTATTT
1 CGGTAATTTTACAAATAGGGGTATTT-GGTAATCTTACAAACCGGGGGTATTT
* *
70509544 CGGTAAGTTTACAAATCGAGGGTATTTTGGTAATCTTACAAACCGGGGGTATTT
1 CGGTAATTTTACAAATAG-GGGTA-TTTGGTAATCTTACAAACCGGGGGTATTT
* * *
70509598 CGATAATTTTATAAACT-GAGGGTATTTCGGTAATTTTACAAAC
1 CGGTAATTTTACAAA-TAG-GGGTATTT-GGTAATCTTACAAAC
70509641 AAAGGTCTTA
Statistics
Matches: 215, Mismatches: 37, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
53 52 0.24
54 159 0.74
55 4 0.02
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.36
Consensus pattern (52 bp):
CGGTAATTTTACAAATAGGGGTATTTGGTAATCTTACAAACCGGGGGTATTT
Found at i:70509640 original size:27 final size:27
Alignment explanation
Indices: 70509361--70509640 Score: 316
Period size: 27 Copynumber: 10.4 Consensus size: 27
70509351 TATTATGATC
70509361 ATTTTACAAA-TCGGGGGTATTTCGGTA
1 ATTTTACAAACT-GGGGGTATTTCGGTA
* * *
70509388 GTCTTACAAACCGGGGGTATTTCGGTA
1 ATTTTACAAACTGGGGGTATTTCGGTA
* * * *
70509415 GTCTTACAAACCGGGGGTATTTCGATA
1 ATTTTACAAACTGGGGGTATTTCGGTA
*
70509442 ATTTTACAAACTAGGGGTATTTCGGTA
1 ATTTTACAAACTGGGGGTATTTCGGTA
* * *
70509469 ATCTTACAAACTAGAGGTATTTCGGTA
1 ATTTTACAAACTGGGGGTATTTCGGTA
* *
70509496 ATTTTACAAA-TTGGGGTATTTCAGTA
1 ATTTTACAAACTGGGGGTATTTCGGTA
70509522 ATTTTACAAA-TCGGGGGTATTTCGGTA
1 ATTTTACAAACT-GGGGGTATTTCGGTA
* * *
70509549 AGTTTACAAA-TCGAGGGTATTTTGGTA
1 ATTTTACAAACT-GGGGGTATTTCGGTA
* * *
70509576 ATCTTACAAACCGGGGGTATTTCGATA
1 ATTTTACAAACTGGGGGTATTTCGGTA
* *
70509603 ATTTTATAAACTGAGGGTATTTCGGTA
1 ATTTTACAAACTGGGGGTATTTCGGTA
70509630 ATTTTACAAAC
1 ATTTTACAAAC
70509641 AAAGGTCTTA
Statistics
Matches: 218, Mismatches: 32, Indels: 6
0.85 0.12 0.02
Matches are distributed among these distances:
26 24 0.11
27 194 0.89
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (27 bp):
ATTTTACAAACTGGGGGTATTTCGGTA
Found at i:70519023 original size:79 final size:81
Alignment explanation
Indices: 70518914--70519096 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
70518904 TACTCGTTCA
* *
70518914 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
70518977 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
70518994 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
70519057 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
70519073 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
70519097 CATCATTCAA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:70519096 original size:40 final size:40
Alignment explanation
Indices: 70518893--70519096 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
70518883 CGGAATTTAA
** *
70518893 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
70518933 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
70518973 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
70519012 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
70519052 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
70519092 CCGGA
1 CCGGA
70519097 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:70519441 original size:29 final size:29
Alignment explanation
Indices: 70519402--70519480 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
70519392 CTTAATAATC
*
70519402 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
70519432 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
70519461 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
70519481 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:70519523 original size:43 final size:43
Alignment explanation
Indices: 70519462--70519564 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
70519452 TGCATTTCAA
70519462 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
70519505 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
70519548 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
70519565 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:70521480 original size:37 final size:37
Alignment explanation
Indices: 70521430--70521508 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
70521420 TTATTACGAA
* * *
70521430 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
70521467 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
70521504 GTCTT
1 GTCTT
70521509 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:70521698 original size:47 final size:47
Alignment explanation
Indices: 70521627--70522601 Score: 1828
Period size: 47 Copynumber: 20.7 Consensus size: 47
70521617 CCCTTCGGGA
* * * * * *
70521627 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70521674 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70521721 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70521768 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70521815 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70521862 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70521909 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70521956 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70522003 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70522050 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70522097 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70522144 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70522191 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70522238 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70522285 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70522332 CTTCA-CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTT-ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70522379 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70522426 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70522473 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70522520 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
70522567 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
70522602 AGAATCCTAA
Statistics
Matches: 914, Mismatches: 11, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
46 2 0.00
47 911 1.00
48 1 0.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:70526245 original size:40 final size:40
Alignment explanation
Indices: 70526200--70526435 Score: 221
Period size: 40 Copynumber: 5.9 Consensus size: 40
70526190 CGAATACACG
* * *
70526200 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* ** *
70526240 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
70526280 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
70526320 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * *
70526360 GTAACTC-GCACAAATGC-CTTC-GGATCTTAGTCCGGATATGG
1 -TCAC-CAGCACGAATGCTCTTCGGGA-CTTAGCCCGGATAT-A
* *
70526401 TCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
1 TCAC-CAGCACGAATGCTCTTCGGGACTTAGCCCGGA
70526436 CATCATTCGA
Statistics
Matches: 161, Mismatches: 29, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
39 3 0.02
40 140 0.87
41 18 0.11
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:70526421 original size:120 final size:120
Alignment explanation
Indices: 70526200--70526435 Score: 279
Period size: 120 Copynumber: 2.0 Consensus size: 120
70526190 CGAATACACG
* * *
70526200 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGG
1 TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAATGCTCTTCGGGA
*
70526265 TTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
66 TTTAGCACGGATATATCACTAGCACGAAAGCTCTTCGGAACTTAGCCCGGATACA
* * *
70526320 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTAGTAAC-TC-GCACAAATGC-CTTC-
1 TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGA--TA-TAACACCAGCACAAATGCTCTTCG
* *
70526381 GGATCTTAGTC-CGGATATGGTCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
63 GGAT-TTAG-CACGGATAT-ATCAC-TAGCACGAAAGCTCTTCGGAACTTAGCCCGGA
70526436 CATCATTCGA
Statistics
Matches: 100, Mismatches: 9, Indels: 14
0.81 0.07 0.11
Matches are distributed among these distances:
119 3 0.03
120 66 0.66
121 18 0.18
122 9 0.09
123 4 0.04
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (120 bp):
TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAATGCTCTTCGGGA
TTTAGCACGGATATATCACTAGCACGAAAGCTCTTCGGAACTTAGCCCGGATACA
Found at i:70526782 original size:29 final size:29
Alignment explanation
Indices: 70526743--70526821 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
70526733 CTTAATAATC
*
70526743 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
70526773 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
70526802 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
70526822 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:70526864 original size:43 final size:43
Alignment explanation
Indices: 70526803--70526905 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
70526793 TGCATTTCAA
70526803 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
70526846 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
70526889 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
70526906 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:70531865 original size:3 final size:3
Alignment explanation
Indices: 70531857--70532027 Score: 245
Period size: 3 Copynumber: 56.7 Consensus size: 3
70531847 TTCCTCATTG
* * * *
70531857 TCT TCT TCT TCT GCT TCT TCT GCT TCT TCT TCT TTT TCT TTT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
* *
70531905 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TGT TCT T-T TCT TGT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
* *
70531952 TCT TGT TCT TGT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
70532000 TCT TCT TCT TCT TCT TCT CTCAT TCT TC
1 TCT TCT TCT TCT TCT TCT -TC-T TCT TC
70532028 AACTGCCTAA
Statistics
Matches: 149, Mismatches: 16, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
2 2 0.01
3 142 0.95
4 4 0.03
5 1 0.01
ACGTcount: A:0.01, C:0.30, G:0.04, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:70532073 original size:24 final size:24
Alignment explanation
Indices: 70532041--70532101 Score: 113
Period size: 24 Copynumber: 2.5 Consensus size: 24
70532031 TGCCTAAACC
70532041 TTAAATTGGTGCTAAAGGGGCTAT
1 TTAAATTGGTGCTAAAGGGGCTAT
70532065 TTAAATTGGTGCTAAAGGGGCTAT
1 TTAAATTGGTGCTAAAGGGGCTAT
*
70532089 TTGAATTGGTGCT
1 TTAAATTGGTGCT
70532102 CACCCTTCAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.26, C:0.08, G:0.30, T:0.36
Consensus pattern (24 bp):
TTAAATTGGTGCTAAAGGGGCTAT
Found at i:70533894 original size:43 final size:44
Alignment explanation
Indices: 70533839--70533992 Score: 172
Period size: 43 Copynumber: 3.6 Consensus size: 44
70533829 AGAAAAGCGC
* * * *
70533839 CGCTATAGAACATGACCTTTAGCAGCACTTTCCCCACAAGCGCT
1 CGCTAAAGAACATGACCTTTAGCGGTACTTTCCCCACAAACGCT
* *
70533883 -GCTAAAGAACATGACATTTAGCGGTGCTTTCCCCACAAACG-T
1 CGCTAAAGAACATGACCTTTAGCGGTACTTTCCCCACAAACGCT
* * * *
70533925 CGCT-ATGAAACATGAACTTTAGCGGTTCTTTCCCCACAAAC-AT
1 CGCTAAAG-AACATGACCTTTAGCGGTACTTTCCCCACAAACGCT
*
70533968 CGCTATAGAACATGACCTTTAGCGG
1 CGCTAAAGAACATGACCTTTAGCGG
70533993 CGTTTTTTCT
Statistics
Matches: 93, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
42 3 0.03
43 89 0.96
44 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.25
Consensus pattern (44 bp):
CGCTAAAGAACATGACCTTTAGCGGTACTTTCCCCACAAACGCT
Found at i:70534611 original size:5 final size:5
Alignment explanation
Indices: 70534601--70534628 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
70534591 GAACTGTGAA
70534601 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
70534629 GAGCACACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:70540509 original size:30 final size:30
Alignment explanation
Indices: 70540425--70540512 Score: 81
Period size: 30 Copynumber: 2.9 Consensus size: 30
70540415 AAAATTAAAT
* * *
70540425 ATAAATTTTAATTTAATGTGTATTTTCATAC
1 ATAAAATTTAATTTAATAT-AATTTTCATAC
* **
70540456 ATGAAATTTAATTTTGTATAATTTT-ATAC
1 ATAAAATTTAATTTAATATAATTTTCATAC
70540485 ATAAAATTTAAATTTAAT-TCAATTTTCA
1 ATAAAATTT-AATTTAATAT-AATTTTCA
70540513 CAAATCACTA
Statistics
Matches: 45, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
29 13 0.29
30 17 0.38
31 15 0.33
ACGTcount: A:0.40, C:0.06, G:0.05, T:0.50
Consensus pattern (30 bp):
ATAAAATTTAATTTAATATAATTTTCATAC
Found at i:70546412 original size:42 final size:42
Alignment explanation
Indices: 70546260--70546412 Score: 155
Period size: 42 Copynumber: 3.6 Consensus size: 42
70546250 TGTCATATAT
* * * * * * *
70546260 CAGATATGGCCTTACATGTAATCTCGTATCAATACGAATATGC
1 CAGATATGGTCTTACACGTAATCTCATATCGATGC-CATATCC
* * * * * * *
70546303 CGGCTATGGTCTTACATGAAAGCTCTTATCGATGCCATATCG
1 CAGATATGGTCTTACACGTAATCTCATATCGATGCCATATCC
70546345 CAGATATGGTCTTACACG-AATTCTCATATCGATGCCATATCC
1 CAGATATGGTCTTACACGTAA-TCTCATATCGATGCCATATCC
70546387 CAGATATGGTCTTACACGTAATCTCA
1 CAGATATGGTCTTACACGTAATCTCA
70546413 GTAACCCAAA
Statistics
Matches: 91, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
41 2 0.02
42 60 0.66
43 29 0.32
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.31
Consensus pattern (42 bp):
CAGATATGGTCTTACACGTAATCTCATATCGATGCCATATCC
Found at i:70552722 original size:43 final size:43
Alignment explanation
Indices: 70552674--70552811 Score: 167
Period size: 40 Copynumber: 3.3 Consensus size: 43
70552664 ATATCCCAGA
70552674 TATGGTCTTACACGTAATCTCGTATAGATGCTAATAACTCAGT
1 TATGGTCTTACACGTAATCTCGTATAGATGCTAATAACTCAGT
*
70552717 TATGG---TACACGTAATCTCGTATAGATGCCAATAACTCAGT
1 TATGGTCTTACACGTAATCTCGTATAGATGCTAATAACTCAGT
* * * * * * * *
70552757 TATGGTCTTACATGAAATCTCTTATTGATGCT-ATATCCCGGA
1 TATGGTCTTACACGTAATCTCGTATAGATGCTAATAACTCAGT
70552799 TATGGTCTTACAC
1 TATGGTCTTACAC
70552812 AAAATCTCAT
Statistics
Matches: 81, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
40 39 0.48
42 18 0.22
43 24 0.30
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.35
Consensus pattern (43 bp):
TATGGTCTTACACGTAATCTCGTATAGATGCTAATAACTCAGT
Found at i:70552809 original size:42 final size:42
Alignment explanation
Indices: 70552757--70552853 Score: 122
Period size: 42 Copynumber: 2.3 Consensus size: 42
70552747 ATAACTCAGT
** * * * * *
70552757 TATGGTCTTACATGAAATCTCTTATTGATGCTATATCCCGGA
1 TATGGTCTTACACAAAATCTCATATCGATCCCATATCCCAGA
*
70552799 TATGGTCTTACACAAAATCTCATATCGATCCCATGTCCCAGA
1 TATGGTCTTACACAAAATCTCATATCGATCCCATATCCCAGA
70552841 TATGGTCTTACAC
1 TATGGTCTTACAC
70552854 GTACACTCAG
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (42 bp):
TATGGTCTTACACAAAATCTCATATCGATCCCATATCCCAGA
Found at i:70553972 original size:13 final size:15
Alignment explanation
Indices: 70553954--70553985 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
70553944 AAATTTTAAC
70553954 AAAATCAT-T-CCAT
1 AAAATCATATACCAT
70553967 AAAATCATATACCAT
1 AAAATCATATACCAT
70553982 AAAA
1 AAAA
70553986 ATATAACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 1 0.06
15 8 0.47
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.25
Consensus pattern (15 bp):
AAAATCATATACCAT
Found at i:70558614 original size:21 final size:21
Alignment explanation
Indices: 70558588--70558627 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
70558578 GAAGAGAAAA
*
70558588 TGAAAGTAA-TTTACGATTGTT
1 TGAAAGCAACTTTA-GATTGTT
70558609 TGAAAGCAACTTTAGATTG
1 TGAAAGCAACTTTAGATTG
70558628 ATAGAAATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.35, C:0.07, G:0.20, T:0.38
Consensus pattern (21 bp):
TGAAAGCAACTTTAGATTGTT
Found at i:70567432 original size:215 final size:214
Alignment explanation
Indices: 70567058--70567489 Score: 634
Period size: 215 Copynumber: 2.0 Consensus size: 214
70567048 ACATCAACAG
* ** *
70567058 GTGAAATCGTATGAAGGATCTGATCAATACCATTGTAAAATTGATATTGGAAGACATTATGAATC
1 GTGAAATCGTATGAAGGATCGGATCAATACCATTGTAAAATCAATAATGGAAGACATTATGAATC
* * *
70567123 TTTTCTAACTCTAACAACAAAGTTAATCGATAAGATATTTGCCTAATCCTCTCAATGGTCTCTTA
66 TTTTCTAACTCTAACAACAAAGTTAATAGATAAGATATTGGCCTAATCCTCTCAATGGTCTCGTA
* * *
70567188 CTGCCTTATAAACTGCTGATTAGGCTTTCTTTTCCAACCAAATC-AAGGAACTTTCTTCCAAGGC
131 CTGCCTGATAAACTGCTGACTAAGCTTTCTTTTCCAACCAAATCGAA-GAACTTTCTTCCAAGGC
70567252 GATACTTTCAAAAATACTCT
195 GATACTTTCAAAAATACTCT
* * *
70567272 GTGAAATTGTGTGATGGATCGGATCAATACCATTGTAAAATCAATACATGGAAGACATTATGAAT
1 GTGAAATCGTATGAAGGATCGGATCAATACCATTGTAAAATCAATA-ATGGAAGACATTATGAAT
* * * *
70567337 CTTTTCTAACTCTAACAGCAAAGTTAATTAG-TAGGCTATTGGTCTAATCCTCTCAATGGTCTCG
65 CTTTTCTAACTCTAACAACAAAGTTAA-TAGATAAGATATTGGCCTAATCCTCTCAATGGTCTCG
* * * *
70567401 TACTGCCTGATAAATTGTTGACTAAGCTTTCTTTTTCGACCAAATCGAAGAACTTTCTTCCAAGG
129 TACTGCCTGATAAACTGCTGACTAAGCTTTCTTTTCCAACCAAATCGAAGAACTTTCTTCCAAGG
70567466 CGATACTTTCAAAAATACTCT
194 CGATACTTTCAAAAATACTCT
70567487 GTG
1 GTG
70567490 GCTGACTTGA
Statistics
Matches: 194, Mismatches: 21, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
214 40 0.21
215 150 0.77
216 4 0.02
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (214 bp):
GTGAAATCGTATGAAGGATCGGATCAATACCATTGTAAAATCAATAATGGAAGACATTATGAATC
TTTTCTAACTCTAACAACAAAGTTAATAGATAAGATATTGGCCTAATCCTCTCAATGGTCTCGTA
CTGCCTGATAAACTGCTGACTAAGCTTTCTTTTCCAACCAAATCGAAGAACTTTCTTCCAAGGCG
ATACTTTCAAAAATACTCT
Found at i:70569728 original size:40 final size:40
Alignment explanation
Indices: 70569630--70569892 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
70569620 TCCTCGTTCA
* * * * *
70569630 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
70569669 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
70569709 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
70569749 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
70569789 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
70569829 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
70569869 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
70569893 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:70577676 original size:40 final size:40
Alignment explanation
Indices: 70577576--70577840 Score: 286
Period size: 40 Copynumber: 6.7 Consensus size: 40
70577566 GCTCCTCGTT
* * * *
70577576 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
70577616 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
70577655 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
70577695 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
70577735 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
70577775 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
70577816 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
70577841 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 39 0.20
40 143 0.73
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:70577800 original size:80 final size:80
Alignment explanation
Indices: 70577543--70577840 Score: 263
Period size: 80 Copynumber: 3.7 Consensus size: 80
70577533 AAATCACGTA
* ** * * *
70577543 CCTTCGGGATTTAA-CCGGATATAGCTC-CTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTTT
1 CCTTCGGGACTTAACCCGGATATAG-TCACTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
70577605 AGTAACTCACAC-AATG
64 AATAACTCGCACAAATG
* * * *
70577621 CCTTCGGGACATAACCCGGATTTA-ACAACTCGCACGAATGCCTTCGGGACTTAACCCGG-ATTT
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTCGCAC-AAAGCCTTCGGGACTTAACCCGGAATTT
*
70577684 AATAACTCGCACGAATG
64 AATAACTCGCACAAATG
* *
70577701 CCTTCGGGACTTAACCCGGATTTAGT-ATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
1 CCTTCGGGACTTAACCCGGATATAGTCA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
70577765 -GTATCTCGCACAAATG
64 AATAACTCGCACAAATG
** * * *
70577781 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTCAC-TCGCACAAAGCCTTCGGGACTTAACCCGGA
70577841 CAGCATTCAA
Statistics
Matches: 182, Mismatches: 26, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
77 1 0.01
78 12 0.07
79 50 0.27
80 106 0.58
81 13 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTCGCACAAAGCCTTCGGGACTTAACCCGGAATTTAA
TAACTCGCACAAATG
Found at i:70577849 original size:41 final size:41
Alignment explanation
Indices: 70577772--70577849 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
70577762 TTTGTATCTC
* * *
70577772 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
70577813 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
70577850 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Done.