Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 214 of 322
Found at i:70583238 original size:11 final size:10
Alignment explanation
Indices: 70583204--70583243 Score: 50
Period size: 11 Copynumber: 4.2 Consensus size: 10
70583194 CAAAGGAACG
70583204 ATCA-CAAAA
1 ATCATCAAAA
70583213 A-CAT-AAAA
1 ATCATCAAAA
70583221 ATCATCAAAA
1 ATCATCAAAA
70583231 ATCGATCAAAA
1 ATC-ATCAAAA
70583242 AT
1 AT
70583244 AGACTTAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
8 7 0.26
9 4 0.15
10 7 0.26
11 9 0.33
ACGTcount: A:0.62, C:0.17, G:0.03, T:0.17
Consensus pattern (10 bp):
ATCATCAAAA
Found at i:70586214 original size:47 final size:47
Alignment explanation
Indices: 70586151--70586501 Score: 603
Period size: 47 Copynumber: 7.4 Consensus size: 47
70586141 CCCTTCGGGA
* * * *
70586151 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70586198 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70586245 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70586292 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70586339 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70586386 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
70586433 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70586482 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
70586502 GTACATCAAT
Statistics
Matches: 293, Mismatches: 9, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 250 0.85
49 43 0.15
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:70593203 original size:16 final size:16
Alignment explanation
Indices: 70593182--70593213 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
70593172 CCTGTAACGC
*
70593182 CCCAAAAATCCTGAAA
1 CCCAAAAATCCCGAAA
70593198 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
70593214 TCCTGAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.34, G:0.06, T:0.09
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:70594696 original size:29 final size:27
Alignment explanation
Indices: 70594661--70594761 Score: 114
Period size: 28 Copynumber: 3.6 Consensus size: 27
70594651 TAAAGGTGGC
*
70594661 TGGGCCTAACGGGCCATATAAATGTGAT
1 TGGGCCTAATGGGCCATAT-AATGTGAT
*
70594689 TCGGGCCTAATGGGCCATAT-ATGGGGATT
1 T-GGGCCTAATGGGCCATATAAT-GTGA-T
*
70594718 TGGGCCTAATGGGCCATATGAATATGAT
1 TGGGCCTAATGGGCCATAT-AATGTGAT
*
70594746 TGGGCTTAATGGGCCA
1 TGGGCCTAATGGGCCA
70594762 GATACAGGTA
Statistics
Matches: 63, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
27 2 0.03
28 38 0.60
29 21 0.33
30 2 0.03
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.27
Consensus pattern (27 bp):
TGGGCCTAATGGGCCATATAATGTGAT
Found at i:70599156 original size:29 final size:29
Alignment explanation
Indices: 70599100--70599213 Score: 124
Period size: 29 Copynumber: 4.0 Consensus size: 29
70599090 TGAGCATGAT
* *
70599100 TATAAATGTGA-CTGGGCCTAACGGGCCA
1 TATAAATGTGATTTGGGCCTAATGGGCCA
* *
70599128 TATAAATGTGATTTTGGCCGAATGGGCCA
1 TATAAATGTGATTTGGGCCTAATGGGCCA
* *
70599157 TATACAGGTGATTTGGGCCTAATGGGCCA
1 TATAAATGTGATTTGGGCCTAATGGGCCA
* * * *
70599186 TATGAATATGA-TTGGTCTTAATGGGCCA
1 TATAAATGTGATTTGGGCCTAATGGGCCA
70599214 GATACAGGTA
Statistics
Matches: 71, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
28 26 0.37
29 45 0.63
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (29 bp):
TATAAATGTGATTTGGGCCTAATGGGCCA
Found at i:70606188 original size:18 final size:19
Alignment explanation
Indices: 70606155--70606190 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
70606145 ATTTGACCAT
70606155 ATGGGCCAGAATGGGCTAA
1 ATGGGCCAGAATGGGCTAA
70606174 ATGGGCCAG-ATGGGCTA
1 ATGGGCCAGAATGGGCTA
70606191 TTGGGCCCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.28, C:0.17, G:0.39, T:0.17
Consensus pattern (19 bp):
ATGGGCCAGAATGGGCTAA
Found at i:70606315 original size:29 final size:28
Alignment explanation
Indices: 70606273--70606337 Score: 76
Period size: 29 Copynumber: 2.3 Consensus size: 28
70606263 ATGTGACTAA
* * *
70606273 GCCTAACGGGCCATATAAATGTGATTTGG
1 GCCTAATGAGCCATATAAATATGA-TTGG
*
70606302 GCCTAATGAGCCATATGAATATGATTGG
1 GCCTAATGAGCCATATAAATATGATTGG
*
70606330 GCTTAATG
1 GCCTAATG
70606338 GACCAGATAC
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
28 11 0.35
29 20 0.65
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29
Consensus pattern (28 bp):
GCCTAATGAGCCATATAAATATGATTGG
Found at i:70616514 original size:43 final size:43
Alignment explanation
Indices: 70616453--70616605 Score: 150
Period size: 43 Copynumber: 3.6 Consensus size: 43
70616443 TAGAAAAGTA
* *
70616453 CCGCTATAGAACATGACCTTTAGCAGCACTTTCCCCACAAGCG
1 CCGCTAAAGAACATGACCTTTAGCAGCACTTTCCCCACAAACG
* **
70616496 CCGCTAAAGAACATGACCTTTAGCGGTGCTTTCCCCACAAACG
1 CCGCTAAAGAACATGACCTTTAGCAGCACTTTCCCCACAAACG
* * * ** *
70616539 TCGCT-ATGAAACATGAACTTTACTGGTGCA--TTCCCCACAAACA
1 CCGCTAAAG-AACATGACCTTTA--GCAGCACTTTCCCCACAAACG
*
70616582 TCGCTAAAGAACATGACCTTTAGC
1 CCGCTAAAGAACATGACCTTTAGC
70616606 GGCGTTTTTT
Statistics
Matches: 90, Mismatches: 16, Indels: 10
0.78 0.14 0.09
Matches are distributed among these distances:
41 1 0.01
42 2 0.02
43 83 0.92
44 2 0.02
45 2 0.02
ACGTcount: A:0.30, C:0.31, G:0.16, T:0.23
Consensus pattern (43 bp):
CCGCTAAAGAACATGACCTTTAGCAGCACTTTCCCCACAAACG
Found at i:70617225 original size:5 final size:5
Alignment explanation
Indices: 70617215--70617247 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
70617205 GAACTGTGAA
70617215 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
70617248 GAACACACAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:70621611 original size:5 final size:5
Alignment explanation
Indices: 70621601--70621630 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
70621591 ATATATAAAG
*
70621601 AATAA AATAA AATTA AATAA AATAA AATAA
1 AATAA AATAA AATAA AATAA AATAA AATAA
70621631 CAAAAAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
AATAA
Found at i:70628512 original size:28 final size:30
Alignment explanation
Indices: 70628464--70628519 Score: 80
Period size: 28 Copynumber: 1.9 Consensus size: 30
70628454 CATGGCCAGG
* *
70628464 CACACAGGCGTGTGAGTAGGCTATGTGAGC
1 CACACAGGCGTGTGAGCAGGCCATGTGAGC
70628494 CACA-AGGCGTGT-AGCAGGCCATGTGA
1 CACACAGGCGTGTGAGCAGGCCATGTGA
70628520 TCGGCCATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 12 0.50
29 8 0.33
30 4 0.17
ACGTcount: A:0.25, C:0.21, G:0.36, T:0.18
Consensus pattern (30 bp):
CACACAGGCGTGTGAGCAGGCCATGTGAGC
Found at i:70630160 original size:18 final size:19
Alignment explanation
Indices: 70630137--70630174 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
70630127 TCATATAAAT
*
70630137 AATAATTCATTC-TATAAC
1 AATAATTCATCCGTATAAC
70630155 AATAATTCATCCGTATAAC
1 AATAATTCATCCGTATAAC
70630174 A
1 A
70630175 CACATAGCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.45, C:0.18, G:0.03, T:0.34
Consensus pattern (19 bp):
AATAATTCATCCGTATAAC
Found at i:70634204 original size:29 final size:28
Alignment explanation
Indices: 70634168--70634245 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
70634158 TCATGAGATT
70634168 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
70634198 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
70634225 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
70634246 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:70641783 original size:28 final size:28
Alignment explanation
Indices: 70641743--70641980 Score: 442
Period size: 28 Copynumber: 8.5 Consensus size: 28
70641733 NNNNNNNNNN
70641743 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
70641771 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
70641799 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
70641827 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
70641855 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
70641883 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
70641911 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
70641939 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
70641966 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70641981 GACTTAATAT
Statistics
Matches: 208, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
27 24 0.12
28 184 0.88
ACGTcount: A:0.26, C:0.11, G:0.29, T:0.34
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:70649257 original size:46 final size:46
Alignment explanation
Indices: 70649182--70649356 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
70649172 CGTAACCCGC
* * * *
70649182 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
* * *
70649228 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCAT
* * * * *
70649278 -C-TCA-CGAACTTGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
70649321 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
70649357 ATGCCCAAAC
Statistics
Matches: 105, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 2 0.02
46 59 0.56
47 27 0.26
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
Found at i:70651074 original size:12 final size:11
Alignment explanation
Indices: 70651039--70651127 Score: 63
Period size: 12 Copynumber: 7.5 Consensus size: 11
70651029 TATGTCTTTC
70651039 AAAATAAAATAAT
1 AAAAT-AAA-AAT
**
70651052 AAAATTGAAAT
1 AAAATAAAAAT
70651063 GAAAATAAAAAT
1 -AAAATAAAAAT
* *
70651075 CAAAAGAAAAAG
1 -AAAATAAAAAT
70651087 AAAA-ATAAAAT
1 AAAATA-AAAAT
70651098 AAAATAAAAAT
1 AAAATAAAAAT
*
70651109 AAGAATAAATAAA
1 AA-AATAAA-AAT
70651122 AAAATA
1 AAAATA
70651128 GGAGGATTCA
Statistics
Matches: 62, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
10 1 0.02
11 22 0.35
12 30 0.48
13 9 0.15
ACGTcount: A:0.76, C:0.01, G:0.06, T:0.17
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:70651083 original size:17 final size:16
Alignment explanation
Indices: 70651049--70651123 Score: 62
Period size: 16 Copynumber: 4.5 Consensus size: 16
70651039 AAAATAAAAT
* *
70651049 AATAAAATTGAAATGAA
1 AATAAAAAT-AAAAGAA
70651066 AATAAAAATCAAAAGAAA
1 AATAAAAAT-AAAAG-AA
* *
70651084 AAGAAAAATAAAATAA
1 AATAAAAATAAAAGAA
*
70651100 AATAAAAATAAGAA-TA
1 AATAAAAATAA-AAGAA
70651116 AATAAAAA
1 AATAAAAA
70651124 AATAGGAGGA
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
16 21 0.43
17 18 0.37
18 10 0.20
ACGTcount: A:0.76, C:0.01, G:0.07, T:0.16
Consensus pattern (16 bp):
AATAAAAATAAAAGAA
Found at i:70651109 original size:6 final size:6
Alignment explanation
Indices: 70651059--70651127 Score: 63
Period size: 6 Copynumber: 11.8 Consensus size: 6
70651049 AATAAAATTG
* * * *
70651059 AAATGA AAATAA AAATCA AAAGAA AAAGAA AAAT-A AAAT-A AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
*
70651105 AAATAA GAATAA ATAA-AA AAATA
1 AAATAA AAATAA A-AATAA AAATA
70651128 GGAGGATTCA
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
5 12 0.23
6 39 0.74
7 2 0.04
ACGTcount: A:0.78, C:0.01, G:0.06, T:0.14
Consensus pattern (6 bp):
AAATAA
Found at i:70651123 original size:22 final size:22
Alignment explanation
Indices: 70651071--70651123 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
70651061 ATGAAAATAA
*
70651071 AAATCAAAAGAAAAAGAAAAAT
1 AAATAAAAAGAAAAAGAAAAAT
* * *
70651093 AAA-ATAAAATAAAAATAAGAAT
1 AAATA-AAAAGAAAAAGAAAAAT
70651115 AAATAAAAA
1 AAATAAAAA
70651124 AATAGGAGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
22 24 0.96
23 1 0.04
ACGTcount: A:0.79, C:0.02, G:0.06, T:0.13
Consensus pattern (22 bp):
AAATAAAAAGAAAAAGAAAAAT
Found at i:70664580 original size:12 final size:12
Alignment explanation
Indices: 70664563--70664590 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
70664553 AATGTAGAAA
70664563 TTCCTCGTCACC
1 TTCCTCGTCACC
70664575 TTCCTCGTCACC
1 TTCCTCGTCACC
70664587 TTCC
1 TTCC
70664591 ACAGTTTTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.50, G:0.07, T:0.36
Consensus pattern (12 bp):
TTCCTCGTCACC
Found at i:70666328 original size:40 final size:40
Alignment explanation
Indices: 70666277--70666513 Score: 375
Period size: 40 Copynumber: 5.9 Consensus size: 40
70666267 ATAACCGCAA
* * * *
70666277 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
70666317 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
70666357 GCATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
70666397 GCACAAATGCCTTCGGGTTTTAGCCCGGATTTATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
70666437 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
70666477 GCACAAATGCCTTCGGGTTTTAGCCCGGATATATCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
70666514 ATGCTCATGC
Statistics
Matches: 180, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 180 1.00
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:70669158 original size:66 final size:66
Alignment explanation
Indices: 70669052--70669183 Score: 228
Period size: 66 Copynumber: 2.0 Consensus size: 66
70669042 CAATCAAAGA
*
70669052 TAAATACCGTTCCCATGAACCACTAAACTCAAGGATGCAACATCTCAACATATCCTCGAGTATCT
1 TAAATACCGTTCCCATGAACCACTAAACTCAAGGATGCAACATCTCAACATATCCTCAAGTATCT
70669117 G
66 G
* * *
70669118 TAAATACCGTTCCCATGAACTACTGAACTCGAGGATGCAACATCTCAACATATCCTCAAGTATCT
1 TAAATACCGTTCCCATGAACCACTAAACTCAAGGATGCAACATCTCAACATATCCTCAAGTATCT
70669183 G
66 G
70669184 AATTATCCGC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 62 1.00
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (66 bp):
TAAATACCGTTCCCATGAACCACTAAACTCAAGGATGCAACATCTCAACATATCCTCAAGTATCT
G
Found at i:70670534 original size:109 final size:109
Alignment explanation
Indices: 70670343--70670560 Score: 400
Period size: 109 Copynumber: 2.0 Consensus size: 109
70670333 CACCAAAATT
*
70670343 GGAGCTTCAGTCAAATGAGTTTTCAGTTGATCGAAGCCTTTCTGACATTTCTCCGTCCATTCGAA
1 GGAGCTTCAGTCAAATGAGTTTTCAGTTGATCGAAACCTTTCTGACATTTCTCCGTCCATTCGAA
70670408 CTTAACATCCTTTTGAAGTAGCTTCGTCATTGGTGTGGCTATCA
66 CTTAACATCCTTTTGAAGTAGCTTCGTCATTGGTGTGGCTATCA
* * *
70670452 GGAGCTTTAGTCAAATGAGTTTTTAGTTGATCGAAACTTTTCTGACATTTCTCCGTCCATTCGAA
1 GGAGCTTCAGTCAAATGAGTTTTCAGTTGATCGAAACCTTTCTGACATTTCTCCGTCCATTCGAA
70670517 CTTAACATCCTTTTGAAGTAGCTTCGTCATTGGTGTGGCTATCA
66 CTTAACATCCTTTTGAAGTAGCTTCGTCATTGGTGTGGCTATCA
70670561 ACGAGAAACC
Statistics
Matches: 105, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
109 105 1.00
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.37
Consensus pattern (109 bp):
GGAGCTTCAGTCAAATGAGTTTTCAGTTGATCGAAACCTTTCTGACATTTCTCCGTCCATTCGAA
CTTAACATCCTTTTGAAGTAGCTTCGTCATTGGTGTGGCTATCA
Found at i:70670905 original size:76 final size:76
Alignment explanation
Indices: 70670774--70670930 Score: 262
Period size: 76 Copynumber: 2.1 Consensus size: 76
70670764 TGCTTATCCC
* *
70670774 GCAAAATTTGCAACACTAATCTCAAGTGTTCAGCATGTTCGATCTCATCTCTTGAATAGACCAAG
1 GCAACATTTGCAACACTAATCTCAAGTGCTCAGCATGTTCGATCTCATCTCTTGAATAGACCAAG
70670839 ATGTCATCAAT
66 ATGTCATCAAT
* * *
70670850 GCAACATTTGCAACACTAGTCTCAGGTGCTCAGCATGTTCGGTCTCATCTCTTGAATAGACCAAG
1 GCAACATTTGCAACACTAATCTCAAGTGCTCAGCATGTTCGATCTCATCTCTTGAATAGACCAAG
70670915 ATGTCATCAAT
66 ATGTCATCAAT
70670926 G-AACA
1 GCAACA
70670931 CAACTACGAA
Statistics
Matches: 76, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
75 4 0.05
76 72 0.95
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.29
Consensus pattern (76 bp):
GCAACATTTGCAACACTAATCTCAAGTGCTCAGCATGTTCGATCTCATCTCTTGAATAGACCAAG
ATGTCATCAAT
Found at i:70671141 original size:95 final size:95
Alignment explanation
Indices: 70670978--70671167 Score: 344
Period size: 95 Copynumber: 2.0 Consensus size: 95
70670968 ATTAATCAAA
*
70670978 TCCATAAATACCGCAGGGGCATTAGTGAGCCCGAACGGCATCACCAAGAACTCGTAGTGACCGTA
1 TCCATAAATACCGCAGGGGCATTAGTGAGCCCAAACGGCATCACCAAGAACTCGTAGTGACCGTA
70671043 CCTCGTTCTGAAAGCAGTTTTGGGTACGTC
66 CCTCGTTCTGAAAGCAGTTTTGGGTACGTC
* * *
70671073 TCCATAAATACTGCAGGGGCATTAGTGAGCCCAAACGGCATCACTAAGAATTCGTAGTGACCGTA
1 TCCATAAATACCGCAGGGGCATTAGTGAGCCCAAACGGCATCACCAAGAACTCGTAGTGACCGTA
70671138 CCTCGTTCTGAAAGCAGTTTTGGGTACGTC
66 CCTCGTTCTGAAAGCAGTTTTGGGTACGTC
70671168 CGAATCTCGA
Statistics
Matches: 91, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
95 91 1.00
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.24
Consensus pattern (95 bp):
TCCATAAATACCGCAGGGGCATTAGTGAGCCCAAACGGCATCACCAAGAACTCGTAGTGACCGTA
CCTCGTTCTGAAAGCAGTTTTGGGTACGTC
Found at i:70691920 original size:17 final size:17
Alignment explanation
Indices: 70691898--70691932 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
70691888 ACCAAATTGA
70691898 CATGGCCGTGTGGTCTG
1 CATGGCCGTGTGGTCTG
70691915 CATGGCCGTGTGGTCTG
1 CATGGCCGTGTGGTCTG
70691932 C
1 C
70691933 CCGTGTGAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.06, C:0.26, G:0.40, T:0.29
Consensus pattern (17 bp):
CATGGCCGTGTGGTCTG
Found at i:70694482 original size:93 final size:93
Alignment explanation
Indices: 70694323--70694491 Score: 257
Period size: 93 Copynumber: 1.8 Consensus size: 93
70694313 GGATGGTTGA
* * * **
70694323 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGCATGCGAACGCCCGAACTCGTTGAGT
70694388 TGAGTCCGAGTCCGTGAGATGTAATTAG
66 TGAGTCCGAGTCCGTGAGATGTAATTAG
* * *
70694416 GCATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGCATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGCATGCGAACGCCCGAACTCGTTGAGT
*
70694481 TGAGTTCGAGT
66 TGAGTCCGAGT
70694492 TCACTTATGG
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 67 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGCATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTCCGTGAGATGTAATTAG
Found at i:70694484 original size:46 final size:45
Alignment explanation
Indices: 70694327--70694500 Score: 156
Period size: 46 Copynumber: 3.8 Consensus size: 45
70694317 GGTTGAGCAT
* * *
70694327 CCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCGAACGC
* * ** *
70694373 TCGAACTCGTTGAGTTGAGTCCGAG-TC-CGTGA-GATGTAATTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TTATGATGCGA--ACGC
* *
70694418 ATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGCATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-ATGCGAACGC
* *
70694466 CCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG
70694501 GGTGGGTTAC
Statistics
Matches: 103, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 5 0.05
46 57 0.55
47 22 0.21
48 7 0.07
49 2 0.02
50 4 0.04
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.31
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCGAACGC
Found at i:70705688 original size:28 final size:27
Alignment explanation
Indices: 70705657--70705752 Score: 97
Period size: 28 Copynumber: 3.4 Consensus size: 27
70705647 TAGTAACAAA
*
70705657 GCACTATGTGTGCGAGATCGGGTGTAAG
1 GCACTATGTGTGCGAGATC-GATGTAAG
* *
70705685 GCACTATGTGTGCGAAAT-TAT-TAATCG
1 GCACTATGTGTGCGAGATCGATGTAA--G
70705712 AGCACTATGTGTGCGAGATCTGATGTAAG
1 -GCACTATGTGTGCGAGATC-GATGTAAG
*
70705741 GCACTGTGTGTG
1 GCACTATGTGTG
70705753 TGCAAAATTA
Statistics
Matches: 56, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
25 3 0.05
26 1 0.02
27 1 0.02
28 45 0.80
29 1 0.02
30 2 0.04
31 3 0.05
ACGTcount: A:0.24, C:0.15, G:0.32, T:0.29
Consensus pattern (27 bp):
GCACTATGTGTGCGAGATCGATGTAAG
Found at i:70705717 original size:56 final size:56
Alignment explanation
Indices: 70705631--70705752 Score: 167
Period size: 56 Copynumber: 2.2 Consensus size: 56
70705621 GAATATATGT
*
70705631 ACTATGTGTGCAAGATTAGTAACAAAGCACTATGTGTGCGAGATCGGGTGTAAGGC
1 ACTATGTGTGCAAGATTAGTAACAAAGCACTATGTGTGCGAGATCGGATGTAAGGC
* * *
70705687 ACTATGTGTGCGAA-ATTATTAATC-GAGCACTATGTGTGCGAGATCTGATGTAAGGC
1 ACTATGTGTGC-AAGATTAGTAA-CAAAGCACTATGTGTGCGAGATCGGATGTAAGGC
*
70705743 ACTGTGTGTG
1 ACTATGTGTG
70705753 TGCAAAATTA
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
56 56 0.95
57 3 0.05
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.29
Consensus pattern (56 bp):
ACTATGTGTGCAAGATTAGTAACAAAGCACTATGTGTGCGAGATCGGATGTAAGGC
Found at i:70712608 original size:28 final size:28
Alignment explanation
Indices: 70712568--70712649 Score: 94
Period size: 29 Copynumber: 2.9 Consensus size: 28
70712558 TGTATTTGAA
* *
70712568 CCATTAAGCCCAATCATATTCATATGGC
1 CCATTAGGCCCAATCACATTCATATGGC
70712596 CCATTAGGCCCAAATCACAGTT-ATATGGC
1 CCATTAGGCCC-AATCACA-TTCATATGGC
* * *
70712625 CCGTTAGACCCAGTCACATTCATAT
1 CCATTAGGCCCAATCACATTCATAT
70712650 TCATGCTCAC
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
27 2 0.04
28 20 0.43
29 22 0.48
30 2 0.04
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CCATTAGGCCCAATCACATTCATATGGC
Found at i:70712893 original size:16 final size:16
Alignment explanation
Indices: 70712860--70712895 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
70712850 GTAGCCAAAC
*
70712860 TTTCAGCTTTTTGACA
1 TTTCAGCTTTTCGACA
*
70712876 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCGACA
70712892 TTTC
1 TTTC
70712896 GACATTTTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.14, C:0.22, G:0.14, T:0.50
Consensus pattern (16 bp):
TTTCAGCTTTTCGACA
Found at i:70716372 original size:48 final size:47
Alignment explanation
Indices: 70716292--70716436 Score: 173
Period size: 48 Copynumber: 3.0 Consensus size: 47
70716282 GTTATGTGTT
* * *
70716292 ATCCAATGTAAGACCATGACTAGGACATGGCATTGGCATCGATATGAG
1 ATCCCATGGAAGACCATGTCT-GGACATGGCATTGGCATCGATATGAG
* **
70716340 ATTCCATGGAAGACCATGTCTGGAACATGGCATTGGCATCGATATTTG
1 ATCCCATGGAAGACCATGTCTGG-ACATGGCATTGGCATCGATATGAG
* * * *
70716388 ATCCCATGTAAGACCATATCTGGGATATTGCATTGGCATCGATATGAG
1 ATCCCATGGAAGACCATGTCT-GGACATGGCATTGGCATCGATATGAG
70716436 A
1 A
70716437 CATTGTGTAA
Statistics
Matches: 82, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
47 2 0.02
48 78 0.95
49 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (47 bp):
ATCCCATGGAAGACCATGTCTGGACATGGCATTGGCATCGATATGAG
Found at i:70716446 original size:48 final size:48
Alignment explanation
Indices: 70716298--70716452 Score: 156
Period size: 48 Copynumber: 3.2 Consensus size: 48
70716288 TGTTATCCAA
*
70716298 TGTAAGACCATGA-CTAGGACATGGCATTGGCATCGATATGAGATTCCATG
1 TGTAAGACCAT-ATCTGGGACATGGCATTGGCATCGATATGAGA-T-CATG
* * ** ***
70716348 -G-AAGACCATGTCTGGAACATGGCATTGGCATCGATATTTGATCCCA
1 TGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGAGATCATG
* *
70716394 TGTAAGACCATATCTGGGATATTGCATTGGCATCGATATGAGA-CATTG
1 TGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGAGATCA-TG
70716442 TGTAAGACCAT
1 TGTAAGACCAT
70716453 CGTTGGGCAA
Statistics
Matches: 84, Mismatches: 17, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
46 1 0.01
47 3 0.04
48 79 0.94
49 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (48 bp):
TGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGAGATCATG
Found at i:70736676 original size:38 final size:38
Alignment explanation
Indices: 70736565--70736728 Score: 211
Period size: 38 Copynumber: 4.3 Consensus size: 38
70736555 ATATTCGATG
*
70736565 TATATCCGGGTTAAATCCCGCAGACTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * * *
70736603 TATATCTGGGCTTAAAGACCCGCAGGCTTCATGCTGGTAA
1 TATATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAT
*
70736643 AATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * * *
70736681 TATATCAGGGATAAATCCCGCAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
70736719 TATATTCGGG
1 TATATCCGGG
70736729 CCTTCGTGCT
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
38 70 0.65
39 10 0.09
40 27 0.25
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
Found at i:70736798 original size:43 final size:43
Alignment explanation
Indices: 70736721--70736802 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 43
70736711 GCTGGTATTA
* * * **
70736721 TATTCGGGCCTTCGTGCTTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCAGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGATGTG
70736764 TATTCAGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGA
1 TATTCAGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGA
70736803 AATGATATGT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.13, C:0.24, G:0.33, T:0.29
Consensus pattern (43 bp):
TATTCAGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGATGTG
Found at i:70737193 original size:45 final size:44
Alignment explanation
Indices: 70737119--70737245 Score: 118
Period size: 45 Copynumber: 2.9 Consensus size: 44
70737109 TTGACTTGAT
* * * ** *
70737119 TATTCGGGCCTTTGAGCTTAGCAAACTATAATACCGGTGAGATAC
1 TATTTGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA-AC
*
70737164 TATTTGGGCCTTCGAGCCTAGCAGGCTATAATGCCAGT--GAAC
1 TATTTGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAAC
* *
70737206 TGATATTGGGCC-TCGAGCCTAACAGGCGA-AATGCCGGTGA
1 T-AT-TTGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
70737246 TTTGAGAAAA
Statistics
Matches: 68, Mismatches: 10, Indels: 9
0.78 0.11 0.10
Matches are distributed among these distances:
42 11 0.16
43 19 0.28
44 7 0.10
45 31 0.46
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (44 bp):
TATTTGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAAC
Found at i:70738787 original size:25 final size:24
Alignment explanation
Indices: 70738755--70738806 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
70738745 TGGAGGACCT
* *
70738755 TACCATTTATAGCTCATAAGAGCA
1 TACCATTTAGAGATCATAAGAGCA
* *
70738779 TACCGATTTAGAGATCGTATGAGCA
1 TACC-ATTTAGAGATCATAAGAGCA
70738804 TAC
1 TAC
70738807 ACGTACAGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 4 0.17
25 19 0.83
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (24 bp):
TACCATTTAGAGATCATAAGAGCA
Found at i:70741750 original size:46 final size:45
Alignment explanation
Indices: 70741552--70741750 Score: 148
Period size: 46 Copynumber: 4.3 Consensus size: 45
70741542 GTAATTTGTG
* *
70741552 TGAGCTAGTGTAAGACCATGTCTGGGACATGGCTTTGGCATTGAGACA
1 TGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCTTCGAC-TTGAGACA
* * * * * * *
70741600 AGTGCTAGTGTAAGACATGTCTAGGACATGCATCAACCTCAGGACA
1 TGAGCTAGTGTAAGACATGTCTGGGACATGCTTCGACTTGA-GACA
* * * * * * *
70741646 TAAGCCAGTGTAAGACATGTCTTGGACATGCGTCGGCTACGAGATGA
1 TGAGCTAGTGTAAGACATGTCTGGGACATGCTTCGACT-TGAGA-CA
* * *
70741693 TG-GTTAGTGTAAGCCATGTCTGGGACATGGCTTCGACTTGAGATA
1 TGAGCTAGTGTAAGACATGTCTGGGACAT-GCTTCGACTTGAGACA
*
70741738 TGAGCTAATGTAA
1 TGAGCTAGTGTAA
70741751 ATTTGTGTCT
Statistics
Matches: 114, Mismatches: 32, Indels: 12
0.72 0.20 0.08
Matches are distributed among these distances:
45 5 0.04
46 73 0.64
47 23 0.20
48 13 0.11
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.26
Consensus pattern (45 bp):
TGAGCTAGTGTAAGACATGTCTGGGACATGCTTCGACTTGAGACA
Found at i:70742794 original size:42 final size:40
Alignment explanation
Indices: 70742716--70742795 Score: 108
Period size: 41 Copynumber: 1.9 Consensus size: 40
70742706 AGGTTTTTGC
*
70742716 ACACGGGCTAGGACACGGGCGTGTCATGGCCGTGTGAATG
1 ACACGGGCTAAGACACGGGCGTGTCATGGCCGTGTGAATG
*
70742756 ACACGGGCTATAGACACGGGTGTGTGCCA-GGCCGTGTGAA
1 ACACGGGCTA-AGACACGGGCGTGT--CATGGCCGTGTGAA
70742796 AACCCTTATA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
40 10 0.29
41 12 0.34
42 11 0.31
43 2 0.06
ACGTcount: A:0.21, C:0.23, G:0.39, T:0.17
Consensus pattern (40 bp):
ACACGGGCTAAGACACGGGCGTGTCATGGCCGTGTGAATG
Found at i:70753966 original size:40 final size:40
Alignment explanation
Indices: 70753882--70754102 Score: 200
Period size: 40 Copynumber: 5.5 Consensus size: 40
70753872 TTGAATGTTG
* * * *
70753882 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
70753921 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
70753962 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
70754002 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
* ** * *
70754042 TCCAGGTTAAGTCCCGAAGGCA-TTGTATGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
70754081 ACCGGGCTATGTCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCA
70754103 CTTGAACGAG
Statistics
Matches: 152, Mismatches: 23, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
39 31 0.20
40 111 0.73
41 10 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:70754019 original size:80 final size:79
Alignment explanation
Indices: 70753882--70754102 Score: 234
Period size: 80 Copynumber: 2.8 Consensus size: 79
70753872 TTGAATGTTG
* * *
70753882 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGACT-ATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGA-T-ACTAAT-TCCGGGCTAAG-TCCCGAAGGCA
* *
70753944 TTTGTGCGAGTTATT-AAT
62 TTCGTGCGAGTT-TTAAAA
*
70753962 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATTCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGG-CTTTGTGCGAGATACTAATTCCGGGCTAAGTCCCGAAGGCATTC
70754027 GTGCGAGTTTTAAAA
65 GTGCGAGTTTTAAAA
* * ** * ** *
70754042 TCCAGGTTAAGTCCCGAAGGCATTGTATGAGTTACTAAAACCGGGCTATGTCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGATACTAATTCCGGGCTAAGTCCCGAAGGCA
70754103 CTTGAACGAG
Statistics
Matches: 121, Mismatches: 15, Indels: 11
0.82 0.10 0.07
Matches are distributed among these distances:
79 36 0.30
80 72 0.60
81 12 0.10
82 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGATACTAATTCCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGTTTTAAAA
Found at i:70761333 original size:14 final size:15
Alignment explanation
Indices: 70761296--70761341 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
70761286 ATATATATGA
*
70761296 ATTAGTAATAAATTAT
1 ATTA-TAATTAATTAT
70761312 ATTA-AATTAATT-T
1 ATTATAATTAATTAT
70761325 ATTATAATTATATTAT
1 ATTATAATTA-ATTAT
70761341 A
1 A
70761342 AGATATTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
13 5 0.19
14 12 0.46
15 3 0.12
16 6 0.23
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (15 bp):
ATTATAATTAATTAT
Found at i:70761528 original size:21 final size:22
Alignment explanation
Indices: 70761504--70761544 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
70761494 AAATAAAAAA
*
70761504 AAAG-AAATGAAAAAGAGAAAC
1 AAAGCAAACGAAAAAGAGAAAC
*
70761525 AAAGCAAACGAAACAGAGAA
1 AAAGCAAACGAAAAAGAGAA
70761545 GAACAGGGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.68, C:0.10, G:0.20, T:0.02
Consensus pattern (22 bp):
AAAGCAAACGAAAAAGAGAAAC
Found at i:70762804 original size:17 final size:18
Alignment explanation
Indices: 70762764--70762810 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 18
70762754 TGAATATTTT
*
70762764 ACTGTTATTGAATTACTG
1 ACTGTTATTGAATGACTG
*
70762782 ATTGTTATTG-ATGACTG
1 ACTGTTATTGAATGACTG
*
70762799 ACTGTTACTGAA
1 ACTGTTATTGAA
70762811 ATGGATAAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
17 14 0.58
18 10 0.42
ACGTcount: A:0.28, C:0.11, G:0.19, T:0.43
Consensus pattern (18 bp):
ACTGTTATTGAATGACTG
Found at i:70765870 original size:8 final size:8
Alignment explanation
Indices: 70765859--70765893 Score: 70
Period size: 8 Copynumber: 4.4 Consensus size: 8
70765849 CCTTCCTTCC
70765859 TTTCTTTA
1 TTTCTTTA
70765867 TTTCTTTA
1 TTTCTTTA
70765875 TTTCTTTA
1 TTTCTTTA
70765883 TTTCTTTA
1 TTTCTTTA
70765891 TTT
1 TTT
70765894 TTCTCTTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTCTTTA
Found at i:70767239 original size:54 final size:53
Alignment explanation
Indices: 70767181--70767299 Score: 157
Period size: 54 Copynumber: 2.2 Consensus size: 53
70767171 TGTCCTTAAC
* * *
70767181 CGTGTAACTCACTGAGATGTCACACATGCCTATGTGCCAGGTCATGTGCTAGG
1 CGTGTAACTCACTGAGATGCCACACATGCCCATGTGCCAGGCCATGTGCTAGG
* * * *
70767234 TCGTGTAACTCTCTGAGTTGCCACACATGCCCATGTGGCATGCCATGTGCTAGG
1 -CGTGTAACTCACTGAGATGCCACACATGCCCATGTGCCAGGCCATGTGCTAGG
70767288 CTGTGTAACTCA
1 C-GTGTAACTCA
70767300 TGAACTTGGA
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
53 1 0.02
54 55 0.98
ACGTcount: A:0.21, C:0.26, G:0.25, T:0.28
Consensus pattern (53 bp):
CGTGTAACTCACTGAGATGCCACACATGCCCATGTGCCAGGCCATGTGCTAGG
Found at i:70768041 original size:22 final size:22
Alignment explanation
Indices: 70768013--70768061 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
70768003 AAACCTGAAG
*
70768013 AACACTGGCACTAGGCCTAAAT
1 AACACTGGCACTAAGCCTAAAT
70768035 AACACTGGCACTAAGCCTAAAT
1 AACACTGGCACTAAGCCTAAAT
70768057 AACAC
1 AACAC
70768062 CGATACTAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.41, C:0.29, G:0.14, T:0.16
Consensus pattern (22 bp):
AACACTGGCACTAAGCCTAAAT
Found at i:70768069 original size:22 final size:22
Alignment explanation
Indices: 70768021--70768071 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
70768011 AGAACACTGG
* * *
70768021 CACTAGGCCTAAATAACACTGG
1 CACTAAGCCTAAATAACACCGA
70768043 CACTAAGCCTAAATAACACCGA
1 CACTAAGCCTAAATAACACCGA
*
70768065 TACTAAG
1 CACTAAG
70768072 TCTGCTAGGC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.41, C:0.27, G:0.14, T:0.18
Consensus pattern (22 bp):
CACTAAGCCTAAATAACACCGA
Found at i:70768092 original size:38 final size:38
Alignment explanation
Indices: 70768041--70768138 Score: 124
Period size: 38 Copynumber: 2.6 Consensus size: 38
70768031 AAATAACACT
* *
70768041 GGCACTAAGCCTAAATAACACCGATACTAAGTCTGCTA
1 GGCACTAAGCCTAAATAACACCGACACTAAGCCTGCTA
** * * *
70768079 GGCACTCGGCCTAAATATCACTGGCACTAAGCCTGCTA
1 GGCACTAAGCCTAAATAACACCGACACTAAGCCTGCTA
*
70768117 GGCACTAAGCCTGAATAACACC
1 GGCACTAAGCCTAAATAACACC
70768139 TCATTTGAAT
Statistics
Matches: 48, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.33, C:0.30, G:0.18, T:0.19
Consensus pattern (38 bp):
GGCACTAAGCCTAAATAACACCGACACTAAGCCTGCTA
Found at i:70771911 original size:55 final size:55
Alignment explanation
Indices: 70771807--70771912 Score: 149
Period size: 55 Copynumber: 1.9 Consensus size: 55
70771797 CTTAAACTTT
** **
70771807 TAAGTCAGTATTGTCCATGGGTAGGCCACATGGGCATGTGCCATAGCCGTGTCTA
1 TAAGTCAGTATTGTCCACAGGTAGGCCACACAGGCATGTGCCATAGCCGTGTCTA
* * *
70771862 TAAGTCAGTATTGTCCACAGGTAGGCCACACAGGCGTGTGTCATGGCCGTG
1 TAAGTCAGTATTGTCCACAGGTAGGCCACACAGGCATGTGCCATAGCCGTG
70771913 CCTTAAAGTT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
55 44 1.00
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.25
Consensus pattern (55 bp):
TAAGTCAGTATTGTCCACAGGTAGGCCACACAGGCATGTGCCATAGCCGTGTCTA
Found at i:70783221 original size:80 final size:80
Alignment explanation
Indices: 70783084--70783266 Score: 210
Period size: 80 Copynumber: 2.3 Consensus size: 80
70783074 TTGAATGCTG
* * *
70783084 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGG-CAT
70783148 TGTGCGAGATACTAAA
65 TGTGCGAGATACTAAA
* * * * * *
70783164 TCCGGGTTAAGTCCCGAAGGCATTCGTG-TGAGTTATTAAATCCGGGTTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGAT-CCGAAGGCAT
* *
70783227 TGTGTGAGTTACTAAA
65 TGTGCGAGATACTAAA
* *
70783243 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
70783267 TGAACGAGGA
Statistics
Matches: 87, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
79 38 0.44
80 44 0.51
81 5 0.06
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
GTGCGAGATACTAAA
Found at i:70783248 original size:39 final size:39
Alignment explanation
Indices: 70783084--70783266 Score: 179
Period size: 40 Copynumber: 4.6 Consensus size: 39
70783074 TTGAATGCTG
* * * * * * *
70783084 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTATGTCCCGAAGGCATTGTG-TGAGTTACTAAA
* * * * *
70783124 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTATG-TCCCGAAGG-CATTGTGTGAGTTACTAAA
* *
70783164 TCCGGGTTAAGTCCCGAAGGCATTCGTGTGAGTTATTAAA
1 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
70783204 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
* *
70783243 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTATGTCCCGAAGGCATT
70783267 TGAACGAGGA
Statistics
Matches: 122, Mismatches: 17, Indels: 9
0.82 0.11 0.06
Matches are distributed among these distances:
39 40 0.33
40 74 0.61
41 8 0.07
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (39 bp):
TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
Found at i:70786170 original size:21 final size:21
Alignment explanation
Indices: 70786144--70786192 Score: 98
Period size: 21 Copynumber: 2.3 Consensus size: 21
70786134 GACTAAATCG
70786144 TAAAAGTTATAAAATTTGTCA
1 TAAAAGTTATAAAATTTGTCA
70786165 TAAAAGTTATAAAATTTGTCA
1 TAAAAGTTATAAAATTTGTCA
70786186 TAAAAGT
1 TAAAAGT
70786193 GTGTTTTAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.49, C:0.04, G:0.10, T:0.37
Consensus pattern (21 bp):
TAAAAGTTATAAAATTTGTCA
Found at i:70789403 original size:17 final size:17
Alignment explanation
Indices: 70789381--70789414 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
70789371 CACTAACTTG
* *
70789381 AAAATGTAATGACAATA
1 AAAATGAAATGAAAATA
70789398 AAAATGAAATGAAAATA
1 AAAATGAAATGAAAATA
70789415 TATATTTATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.65, C:0.03, G:0.12, T:0.21
Consensus pattern (17 bp):
AAAATGAAATGAAAATA
Found at i:70814946 original size:37 final size:37
Alignment explanation
Indices: 70814896--70814974 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
70814886 TTATTACGAA
* * *
70814896 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
70814933 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
70814970 GTCTT
1 GTCTT
70814975 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:70815171 original size:47 final size:47
Alignment explanation
Indices: 70815093--70819137 Score: 7973
Period size: 47 Copynumber: 86.0 Consensus size: 47
70815083 CCCTTCGGGA
* * * * * *
70815093 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70815140 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70815187 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70815234 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70815281 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70815328 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70815375 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70815422 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70815469 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70815516 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70815563 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70815610 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70815657 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70815704 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70815751 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70815798 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70815845 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70815892 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70815939 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70815986 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70816033 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70816080 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70816127 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70816174 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70816221 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70816268 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70816315 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70816362 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70816409 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70816456 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70816503 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70816550 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70816597 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70816644 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70816691 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70816738 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70816785 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70816832 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70816879 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70816926 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70816973 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70817020 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70817069 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70817116 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70817163 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70817210 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70817257 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70817304 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70817351 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70817398 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70817445 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70817492 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70817539 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70817586 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70817633 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70817680 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70817727 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70817774 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70817821 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70817868 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70817915 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70817962 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70818009 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70818056 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70818103 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70818150 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70818197 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70818244 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70818291 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70818338 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70818385 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70818432 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70818479 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70818526 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70818573 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70818620 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70818667 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70818714 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70818761 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70818808 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70818855 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70818902 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70818949 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70818996 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70819043 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70819090 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70819137 C
1 C
70819138 ATACTATCAT
Statistics
Matches: 3980, Mismatches: 16, Indels: 4
1.00 0.00 0.00
Matches are distributed among these distances:
47 3935 0.99
49 45 0.01
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:70821422 original size:17 final size:17
Alignment explanation
Indices: 70821400--70821433 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
70821390 TGCAATTCCC
70821400 ATTTGTTGGCAGATACT
1 ATTTGTTGGCAGATACT
70821417 ATTTGTTGGCAGATACT
1 ATTTGTTGGCAGATACT
70821434 TACTATCTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.41
Consensus pattern (17 bp):
ATTTGTTGGCAGATACT
Found at i:70824879 original size:30 final size:30
Alignment explanation
Indices: 70824839--70824898 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
70824829 TGAAAAATAC
*
70824839 TACAAGAACTAATTATTGAAATACATCTTG
1 TACAAGAACTAACTATTGAAATACATCTTG
* *
70824869 TACAATAACTAACTATTGAGATACATCTTG
1 TACAAGAACTAACTATTGAAATACATCTTG
70824899 GGCAGATACT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33
Consensus pattern (30 bp):
TACAAGAACTAACTATTGAAATACATCTTG
Found at i:70826381 original size:2 final size:2
Alignment explanation
Indices: 70826374--70826466 Score: 89
Period size: 2 Copynumber: 47.0 Consensus size: 2
70826364 TCATTATAGT
* * * * *
70826374 AG AG AG AG AG AG AG AG AG AG AG AG GG AG GG AG GG AG GG AG GG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * * * *
70826416 AG AG GG AG AG AG GG AG AG AG AG AG -G GG AG AG AG AA AG AA AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
70826457 AG AG AG AG AG
1 AG AG AG AG AG
70826467 TGTGTGAGTG
Statistics
Matches: 71, Mismatches: 19, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
1 1 0.01
2 70 0.99
ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00
Consensus pattern (2 bp):
AG
Found at i:70826421 original size:22 final size:22
Alignment explanation
Indices: 70826377--70826462 Score: 102
Period size: 22 Copynumber: 4.0 Consensus size: 22
70826367 TTATAGTAGA
*
70826377 GAGAGAGAGAGAGAGAGAGAGG
1 GAGAGAGGGAGAGAGAGAGAGG
* * *
70826399 GAGGGAGGGAGGGAGGGAGAGG
1 GAGAGAGGGAGAGAGAGAGAGG
70826421 GAGAGAGGGAGAGAGAGAG-GG
1 GAGAGAGGGAGAGAGAGAGAGG
** *
70826442 GAGAGAGAAAGAAAGAGAGAG
1 GAGAGAGGGAGAGAGAGAGAG
70826463 AGAGTGTGTG
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
21 18 0.34
22 35 0.66
ACGTcount: A:0.42, C:0.00, G:0.58, T:0.00
Consensus pattern (22 bp):
GAGAGAGGGAGAGAGAGAGAGG
Found at i:70827208 original size:19 final size:19
Alignment explanation
Indices: 70827172--70827209 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
70827162 TAAAAATATT
*
70827172 TTTATATTATTTTCATTAA
1 TTTATATTATTATCATTAA
70827191 TTTATATATATTAT-ATTAA
1 TTTATAT-TATTATCATTAA
70827210 AATGTTATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTATATTATTATCATTAA
Found at i:70827440 original size:27 final size:27
Alignment explanation
Indices: 70827396--70827462 Score: 116
Period size: 27 Copynumber: 2.4 Consensus size: 27
70827386 CTGATTTTCG
70827396 ATAGTTTGGTTTTTCGCTTACCCTGCCGT
1 ATAG-TTGG-TTTTCGCTTACCCTGCCGT
70827425 ATAGTTGGTTTTCGCTTACCCTGCCGT
1 ATAGTTGGTTTTCGCTTACCCTGCCGT
70827452 ATAGTTGGTTT
1 ATAGTTGGTTT
70827463 GTATGGATTA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
27 30 0.79
28 4 0.11
29 4 0.11
ACGTcount: A:0.12, C:0.21, G:0.22, T:0.45
Consensus pattern (27 bp):
ATAGTTGGTTTTCGCTTACCCTGCCGT
Found at i:70831763 original size:24 final size:24
Alignment explanation
Indices: 70831736--70831787 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
70831726 TTAGTAAGTC
*
70831736 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
70831760 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
70831784 AAAT
1 AAAT
70831788 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:70835583 original size:9 final size:9
Alignment explanation
Indices: 70835569--70835613 Score: 56
Period size: 9 Copynumber: 5.1 Consensus size: 9
70835559 TCTCTCCTGG
70835569 TTCTTTTTT
1 TTCTTTTTT
70835578 TTC-TTTTT
1 TTCTTTTTT
*
70835586 TTCTTTTCT
1 TTCTTTTTT
*
70835595 TTCTTTTTC
1 TTCTTTTTT
*
70835604 TACTTTTTT
1 TTCTTTTTT
70835613 T
1 T
70835614 CATACTTCTT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
8 8 0.27
9 22 0.73
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (9 bp):
TTCTTTTTT
Found at i:70835591 original size:17 final size:18
Alignment explanation
Indices: 70835569--70835613 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 18
70835559 TCTCTCCTGG
70835569 TTCTTTTTTTTCTTTTT-
1 TTCTTTTTTTTCTTTTTC
*
70835586 TTCTTTTCTTTCTTTTTC
1 TTCTTTTTTTTCTTTTTC
*
70835604 TACTTTTTTT
1 TTCTTTTTTT
70835614 CATACTTCTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 16 0.67
18 8 0.33
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (18 bp):
TTCTTTTTTTTCTTTTTC
Found at i:70835619 original size:12 final size:12
Alignment explanation
Indices: 70835595--70835628 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
70835585 TTTCTTTTCT
70835595 TTCTTTTTCTAC
1 TTCTTTTTCTAC
70835607 TT-TTTTTCATAC
1 TTCTTTTTC-TAC
70835619 TTCTTTTTCT
1 TTCTTTTTCT
70835629 TTCTCTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 6 0.30
12 8 0.40
13 6 0.30
ACGTcount: A:0.09, C:0.21, G:0.00, T:0.71
Consensus pattern (12 bp):
TTCTTTTTCTAC
Found at i:70840064 original size:26 final size:26
Alignment explanation
Indices: 70840028--70840080 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
70840018 CTAAAAAAGT
*
70840028 TACTACGTAAGAACACACCGTTTGTG
1 TACTACGTAAGAACACACCATTTGTG
*
70840054 TACTGCGTAAGAACACACCATTTGTG
1 TACTACGTAAGAACACACCATTTGTG
70840080 T
1 T
70840081 CGTCTGAAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
TACTACGTAAGAACACACCATTTGTG
Found at i:70842447 original size:29 final size:30
Alignment explanation
Indices: 70842392--70842448 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
70842382 CTCTCTTGGT
* ** *
70842392 TTTTTTTCCTTTCTTTTTCTATTTTCTTCC
1 TTTTTTTACTTTCTTTTAATATCTTCTTCC
70842422 TTTTTTTACTTTCTTTTAATA-CTTCTT
1 TTTTTTTACTTTCTTTTAATATCTTCTT
70842449 TATCATTCTC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
29 5 0.22
30 18 0.78
ACGTcount: A:0.09, C:0.19, G:0.00, T:0.72
Consensus pattern (30 bp):
TTTTTTTACTTTCTTTTAATATCTTCTTCC
Found at i:70846505 original size:27 final size:27
Alignment explanation
Indices: 70846488--70846725 Score: 280
Period size: 27 Copynumber: 8.8 Consensus size: 27
70846478 CGATTTGTAG
* *
70846488 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAA
* * *
70846515 AATTACCGTTTCACCCTCGATGTACAA
1 AATTACCATTTTACCCTCGATTTACAA
* *
70846542 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAA
* * *
70846569 AATTACCGTTTCACCCTCGATGTACAA
1 AATTACCATTTTACCCTCGATTTACAA
* *
70846596 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAA
*
70846623 AATTACCATTTTACACTCGATTTACAA
1 AATTACCATTTTACCCTCGATTTACAA
* ** *
70846650 AATCACTGTTTTACCCTAGATTTACAA
1 AATTACCATTTTACCCTCGATTTACAA
*
70846677 AATTACCATTTTACCCTC-AGTTTAAAA
1 AATTACCATTTTACCCTCGA-TTTACAA
* *
70846704 AATTACCGTTTTACTCTCGATT
1 AATTACCATTTTACCCTCGATT
70846726 GTGAAATTAC
Statistics
Matches: 174, Mismatches: 35, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
26 1 0.01
27 172 0.99
28 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.08, T:0.37
Consensus pattern (27 bp):
AATTACCATTTTACCCTCGATTTACAA
Found at i:70846546 original size:54 final size:54
Alignment explanation
Indices: 70846488--70846725 Score: 316
Period size: 54 Copynumber: 4.4 Consensus size: 54
70846478 CGATTTGTAG
*
70846488 AATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATGTACAA
1 AATTACCATTTTACCCTCGATTTATAGAATTACCATTTCACCCTCGATGTACAA
*
70846542 AATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATGTACAA
1 AATTACCATTTTACCCTCGATTTATAGAATTACCATTTCACCCTCGATGTACAA
* * *
70846596 AATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACACTCGATTTACAA
1 AATTACCATTTTACCCTCGATTTATAGAATTACCATTTCACCCTCGATGTACAA
* ** * * * * * *
70846650 AATCACTGTTTTACCCTAGATTTACAAAATTACCATTTTACCCTC-AGTTTAAAA
1 AATTACCATTTTACCCTCGATTTATAGAATTACCATTTCACCCTCGA-TGTACAA
* *
70846704 AATTACCGTTTTACTCTCGATT
1 AATTACCATTTTACCCTCGATT
70846726 GTGAAATTAC
Statistics
Matches: 167, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
53 1 0.01
54 166 0.99
ACGTcount: A:0.31, C:0.24, G:0.08, T:0.37
Consensus pattern (54 bp):
AATTACCATTTTACCCTCGATTTATAGAATTACCATTTCACCCTCGATGTACAA
Found at i:70846768 original size:27 final size:27
Alignment explanation
Indices: 70846729--70846875 Score: 82
Period size: 27 Copynumber: 5.4 Consensus size: 27
70846719 CTCGATTGTG
**
70846729 AAATTACTGAAATACCCCT-GTAGGATA
1 AAATTACCAAAATACCCCTAGTAGG-TA
* * **
70846756 TAATTACCAAAATACTCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTAGGTA
* * **
70846783 AAATTACCAAAATACCCTTAATTTGTA
1 AAATTACCAAAATACCCCTAGTAGGTA
* * * ** *
70846810 AAAGTACCGAAATACCACTAGTTTGTG
1 AAATTACCAAAATACCCCTAGTAGGTA
* * **
70846837 AAATTACCGAAATA-CCCTCAATTTGTA
1 AAATTACCAAAATACCCCT-AGTAGGTA
70846864 AAATTACCAAAA
1 AAATTACCAAAA
70846876 CACCTCTGAT
Statistics
Matches: 97, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
26 3 0.03
27 91 0.94
28 3 0.03
ACGTcount: A:0.42, C:0.19, G:0.10, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTAGGTA
Found at i:70846823 original size:54 final size:54
Alignment explanation
Indices: 70846760--70846875 Score: 171
Period size: 54 Copynumber: 2.1 Consensus size: 54
70846750 AGGATATAAT
*
70846760 TACCAAAATACTC-CTAGTTTGTAAAATTACCAAAATACCCTTAATTTGTAAAAG
1 TACCAAAATAC-CACTAGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAAG
* * * *
70846814 TACCGAAATACCACTAGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAAT
1 TACCAAAATACCACTAGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAAG
70846868 TACCAAAA
1 TACCAAAA
70846876 CACCTCTGAT
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
53 1 0.02
54 54 0.98
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (54 bp):
TACCAAAATACCACTAGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAAG
Found at i:70846887 original size:27 final size:27
Alignment explanation
Indices: 70846757--70846897 Score: 110
Period size: 27 Copynumber: 5.2 Consensus size: 27
70846747 TGTAGGATAT
* *
70846757 AATTACCAAAATA-CTCCTAGTTTGTAA
1 AATTACCAAAACACCT-CTAATTTGTAA
*
70846784 AATTACCAAAATACC-CTTAATTTGTAA
1 AATTACCAAAACACCTC-TAATTTGTAA
* * * * * *
70846811 AAGTACCGAAATACCACTAGTTTGTGA
1 AATTACCAAAACACCTCTAATTTGTAA
70846838 AATTACCGAAATAC-CCTC-AATTTGTAA
1 AATTACC-AAA-ACACCTCTAATTTGTAA
* **
70846865 AATTACCAAAACACCTCTGATTTAAAA
1 AATTACCAAAACACCTCTAATTTGTAA
70846892 AATTAC
1 AATTAC
70846898 AGAAATACCC
Statistics
Matches: 93, Mismatches: 14, Indels: 14
0.77 0.12 0.12
Matches are distributed among these distances:
25 2 0.02
26 8 0.09
27 75 0.81
28 7 0.08
29 1 0.01
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.30
Consensus pattern (27 bp):
AATTACCAAAACACCTCTAATTTGTAA
Found at i:70846895 original size:54 final size:54
Alignment explanation
Indices: 70846760--70846908 Score: 149
Period size: 54 Copynumber: 2.8 Consensus size: 54
70846750 AGGATATAAT
* ** * *
70846760 TACCAAAATACTC-CTAGTTTGTAAAATTACCAAAATACCCTTAATTTGTAAAAG
1 TACCAAAACAC-CACTAGTTTAAAAAATTACCGAAATACCCTCAATTTGTAAAAG
* * *** *
70846814 TACCGAAATACCACTAGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAAT
1 TACCAAAACACCACTAGTTTAAAAAATTACCGAAATACCCTCAATTTGTAAAAG
* *
70846868 TACCAAAACACCTCT-GATTTAAAAAATTACAGAAATACCCT
1 TACCAAAACACCACTAG-TTTAAAAAATTACCGAAATACCCT
70846909 TGACTTTCTA
Statistics
Matches: 81, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
53 2 0.02
54 79 0.98
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (54 bp):
TACCAAAACACCACTAGTTTAAAAAATTACCGAAATACCCTCAATTTGTAAAAG
Found at i:70846903 original size:81 final size:81
Alignment explanation
Indices: 70846757--70846906 Score: 196
Period size: 81 Copynumber: 1.9 Consensus size: 81
70846747 TGTAGGATAT
* * ** *
70846757 AATTACCAAAATACTCCTAGTTTGTAAAATTACCAAAATACCCTTAATTTGTAAAAGTACCGAAA
1 AATTACCAAAATACTCCTAATTTGTAAAATTACCAAAACACCCTTAATTTAAAAAAGTACAGAAA
70846822 TACCACTAGTTTGTGA
66 TACCACTAGTTTGTGA
* * *
70846838 AATTACCGAAATAC-CCTCAATTTGTAAAATTACCAAAACA-CCTCTGATTTAAAAAATTACAGA
1 AATTACCAAAATACTCCT-AATTTGTAAAATTACCAAAACACCCT-TAATTTAAAAAAGTACAGA
70846901 AATACC
64 AATACC
70846907 CTTGACTTTC
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
80 6 0.10
81 53 0.90
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.29
Consensus pattern (81 bp):
AATTACCAAAATACTCCTAATTTGTAAAATTACCAAAACACCCTTAATTTAAAAAAGTACAGAAA
TACCACTAGTTTGTGA
Found at i:70846958 original size:27 final size:27
Alignment explanation
Indices: 70846919--70846970 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
70846909 TGACTTTCTA
*
70846919 AAAATAATAGAAATGCCATTGGTTTAC
1 AAAATAATAGAAATACCATTGGTTTAC
* * *
70846946 AAAATTATTGAAATACCCTTGGTTT
1 AAAATAATAGAAATACCATTGGTTT
70846971 GTAGATTTAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (27 bp):
AAAATAATAGAAATACCATTGGTTTAC
Found at i:70847066 original size:27 final size:27
Alignment explanation
Indices: 70847023--70847088 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
70847013 CACCCCTAAT
* *
70847023 AGGTAAAAAGACCGTAA-AGACCCTGTA
1 AGGTAAAATGACTGTAATA-ACCCTGTA
* * *
70847050 GGGTAAAGTGACTGTAATACCCCTGTA
1 AGGTAAAATGACTGTAATAACCCTGTA
70847077 AGGTAAAATGAC
1 AGGTAAAATGAC
70847089 GAATATGCCC
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.39, C:0.17, G:0.24, T:0.20
Consensus pattern (27 bp):
AGGTAAAATGACTGTAATAACCCTGTA
Found at i:70847936 original size:25 final size:24
Alignment explanation
Indices: 70847898--70847967 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 24
70847888 AGGAAGTGCT
*
70847898 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
70847922 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
70847947 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
70847968 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
24 1 0.02
25 41 0.98
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:70847980 original size:24 final size:24
Alignment explanation
Indices: 70847897--70847980 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 24
70847887 GAGGAAGTGC
* *
70847897 TAAAAGGGCTCTGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
*
70847922 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
70847946 CAGAAAGGGCTTTGCCCCAG-TTAT
1 TA-AAAGGGCTTTGCCCCAGTTTAT
70847970 TAAAAGAGGCT
1 TAAAAG-GGCT
70847981 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.19
25 38 0.73
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:70848173 original size:42 final size:42
Alignment explanation
Indices: 70848114--70848247 Score: 259
Period size: 42 Copynumber: 3.2 Consensus size: 42
70848104 TAGCCTCCCC
70848114 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
70848156 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
*
70848198 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
70848240 AAATGGGC
1 AAATGGGC
70848248 CTAAGGGCCA
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 91 1.00
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:70848304 original size:31 final size:31
Alignment explanation
Indices: 70848269--70848354 Score: 120
Period size: 31 Copynumber: 2.8 Consensus size: 31
70848259 ACCATTTACA
70848269 GTAAAGGCTTCGGCCCAGTGATATGATTTAT
1 GTAAAGGCTTCGGCCCAGTGATATGATTTAT
**
70848300 GTAAAAACTTCGGCCCAGTGATATGATTTAT
1 GTAAAGGCTTCGGCCCAGTGATATGATTTAT
* **
70848331 GGAAAGGCTTCAACCCAGT-ATATG
1 GTAAAGGCTTCGGCCCAGTGATATG
70848355 TCAAGACTAA
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
30 5 0.10
31 43 0.90
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.29
Consensus pattern (31 bp):
GTAAAGGCTTCGGCCCAGTGATATGATTTAT
Found at i:70850613 original size:27 final size:27
Alignment explanation
Indices: 70850582--70850779 Score: 227
Period size: 27 Copynumber: 7.3 Consensus size: 27
70850572 TTATGAAATG
* *
70850582 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
70850609 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
70850636 CCCTCGATTTAAAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * * *
70850663 CCCTTGATTCATAGAATTATCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
70850690 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * * **
70850717 CCCTAGATTTACAAAATTACAATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
70850744 CCCTC-AGTTTAAAAAATTACCGTTTTA
1 CCCTCGA-TTTATAGAATTACCGTTTTA
70850771 CCCTCGATT
1 CCCTCGATT
70850780 GTGAAATTAT
Statistics
Matches: 144, Mismatches: 25, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 142 0.99
28 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCGTTTTA
Found at i:70850733 original size:81 final size:81
Alignment explanation
Indices: 70850593--70850779 Score: 250
Period size: 81 Copynumber: 2.3 Consensus size: 81
70850583 CCTCGATTTG
* * **
70850593 TAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTAAAAAATTACCG
1 TAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTAGATTTAAAAAATTACAA
70850658 TTTTACCCTTGATTCA
66 TTTTACCCTTGATTCA
* * *
70850674 TAGAATTATCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTAGATTTACAAAATTACAA
1 TAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTAGATTTAAAAAATTACAA
* *
70850739 TTTTACCC-TCAGTTTA
66 TTTTACCCTTGA-TTCA
* * *
70850755 AAAAATTACCGTTTTACCCTCGATT
1 TAGAATTACCATTTTACCCTCGATT
70850780 GTGAAATTAT
Statistics
Matches: 92, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
80 2 0.02
81 90 0.98
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.39
Consensus pattern (81 bp):
TAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTAGATTTAAAAAATTACAA
TTTTACCCTTGATTCA
Found at i:70850841 original size:27 final size:27
Alignment explanation
Indices: 70850811--70850914 Score: 140
Period size: 27 Copynumber: 3.9 Consensus size: 27
70850801 TGTAGGATAG
70850811 AATTACCAAAATACCCCTAATTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
* *
70850838 AATTACCAAAATACCGCTAGA-TTGGAA
1 AATTACCAAAATACCCCTA-ATTTGTAA
*
70850865 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AATTTGTAA
*
70850892 AATTACCAAAATACCTCTAATTT
1 AATTACCAAAATACCCCTAATTT
70850915 ACAAAAGTAC
Statistics
Matches: 66, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
26 4 0.06
27 58 0.88
28 4 0.06
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTGTAA
Found at i:70850930 original size:54 final size:55
Alignment explanation
Indices: 70850819--70850935 Score: 159
Period size: 54 Copynumber: 2.2 Consensus size: 55
70850809 AGAATTACCA
** * *
70850819 AAATACCC-CTAATTTGTAAAATTACCAAAATACCGCTAGATTGGAAAATTACCG
1 AAATACCCTCTAATTTGTAAAATTACCAAAATACCGCTAGATTACAAAAGTACAG
*
70850873 AAATACCCTC-AATTTGTAAAATTACCAAAATACCTCTA-ATTTACAAAAGTACAG
1 AAATACCCTCTAATTTGTAAAATTACCAAAATACCGCTAGA-TTACAAAAGTACAG
70850927 AAATACCCT
1 AAATACCCT
70850936 TGACTTTCTA
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
53 1 0.02
54 54 0.96
55 1 0.02
ACGTcount: A:0.44, C:0.21, G:0.08, T:0.26
Consensus pattern (55 bp):
AAATACCCTCTAATTTGTAAAATTACCAAAATACCGCTAGATTACAAAAGTACAG
Found at i:70850985 original size:27 final size:27
Alignment explanation
Indices: 70850946--70850997 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
70850936 TGACTTTCTA
70850946 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
70850973 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
70850998 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:70851806 original size:42 final size:42
Alignment explanation
Indices: 70851747--70851882 Score: 218
Period size: 42 Copynumber: 3.2 Consensus size: 42
70851737 GAAAAATGAC
*
70851747 TGAAATTGGCTTGCATACATTCATTGACATTACATGTGATAT
1 TGAAATGGGCTTGCATACATTCATTGACATTACATGTGATAT
* *
70851789 TGAAATGGGCTTGCATACATTCATTAAAATTACATGTGATAT
1 TGAAATGGGCTTGCATACATTCATTGACATTACATGTGATAT
** *
70851831 TGAAATGGGCTTTTATACATCCATTGACATTACATGTGATAT
1 TGAAATGGGCTTGCATACATTCATTGACATTACATGTGATAT
70851873 TGAAATGGGC
1 TGAAATGGGC
70851883 CTAAGGGCCA
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 86 1.00
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.36
Consensus pattern (42 bp):
TGAAATGGGCTTGCATACATTCATTGACATTACATGTGATAT
Found at i:70851958 original size:31 final size:31
Alignment explanation
Indices: 70851906--70852020 Score: 162
Period size: 31 Copynumber: 3.7 Consensus size: 31
70851896 CGTTTAGAGT
*
70851906 AAAGGC-TTCGCCCTAGTGATATGATTTATGA
1 AAAGGCTTTGGCCC-AGTGATATGATTTATGA
**
70851937 AAACACTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTTGGCCCAGTGATATGATTTATGA
*
70851968 AAAGGCTTTGGCCCAGTGATATGATTTATGG
1 AAAGGCTTTGGCCCAGTGATATGATTTATGA
*
70851999 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTTGGCCCAGTGATATG
70852021 TCAAGACTAA
Statistics
Matches: 76, Mismatches: 7, Indels: 3
0.88 0.08 0.03
Matches are distributed among these distances:
30 5 0.07
31 65 0.86
32 6 0.08
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (31 bp):
AAAGGCTTTGGCCCAGTGATATGATTTATGA
Found at i:70853458 original size:42 final size:43
Alignment explanation
Indices: 70853411--70853518 Score: 139
Period size: 43 Copynumber: 2.5 Consensus size: 43
70853401 TGAGATTTAT
* *
70853411 GTGTAAGACCATATTTGGGAT-TTTGCATTGAGATGAGA-CTTC
1 GTGTAAGACCATATCTGGGATATTGGCATTGAGATGAGATC-TC
* * *
70853453 GTGTAAGACCATAGCTGGGCTATTGGCATTGATATGAGATCTC
1 GTGTAAGACCATATCTGGGATATTGGCATTGAGATGAGATCTC
*
70853496 ATGTAAGACCATATCTGGGATAT
1 GTGTAAGACCATATCTGGGATAT
70853519 GACATTGGTA
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
42 18 0.32
43 37 0.66
44 1 0.02
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (43 bp):
GTGTAAGACCATATCTGGGATATTGGCATTGAGATGAGATCTC
Found at i:70857651 original size:12 final size:12
Alignment explanation
Indices: 70857630--70857661 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
70857620 GAGAACCTTG
70857630 TATATATGCTTA
1 TATATATGCTTA
*
70857642 TATATGTGCTTA
1 TATATATGCTTA
70857654 TATATATG
1 TATATATG
70857662 TGAGTGATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.31, C:0.06, G:0.12, T:0.50
Consensus pattern (12 bp):
TATATATGCTTA
Found at i:70890771 original size:26 final size:26
Alignment explanation
Indices: 70890742--70890801 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
70890732 TCCCTTTGAA
* * *
70890742 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
70890768 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
70890796 CCATTC
1 TCATTC
70890802 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:70890787 original size:28 final size:28
Alignment explanation
Indices: 70890756--70890827 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
70890746 TCGATATTTT
*
70890756 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
70890784 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
70890812 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
70890828 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:70900557 original size:21 final size:19
Alignment explanation
Indices: 70900525--70900564 Score: 62
Period size: 21 Copynumber: 2.0 Consensus size: 19
70900515 GTGATGAACA
70900525 TGAATGAATGGTATTTTAT
1 TGAATGAATGGTATTTTAT
70900544 TGAATTGATATGGTATTTTAT
1 TGAA-TGA-ATGGTATTTTAT
70900565 ATTTGATTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.21
20 3 0.16
21 12 0.63
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (19 bp):
TGAATGAATGGTATTTTAT
Found at i:70902312 original size:29 final size:29
Alignment explanation
Indices: 70902280--70902349 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 29
70902270 TGGGGCCTAG
70902280 TTCATATTCT-TATGGCCCACTAGGCCCAA
1 TTCATATT-TATATGGCCCACTAGGCCCAA
* *
70902309 TTCACATTTATATGGCCCATTAGGCCCAA
1 TTCATATTTATATGGCCCACTAGGCCCAA
*
70902338 ATCATA-TTATAT
1 TTCATATTTATAT
70902350 TCATGCTCAC
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
28 7 0.19
29 29 0.81
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.34
Consensus pattern (29 bp):
TTCATATTTATATGGCCCACTAGGCCCAA
Found at i:70902451 original size:19 final size:18
Alignment explanation
Indices: 70902418--70902454 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
70902408 TGGGCCCAAC
70902418 AGCCCATCAGGCCCATTT
1 AGCCCATCAGGCCCATTT
*
70902436 AGCCCATTCCGGCCCATTT
1 AGCCCA-TCAGGCCCATTT
70902455 GGCCAATTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.19, C:0.41, G:0.16, T:0.24
Consensus pattern (18 bp):
AGCCCATCAGGCCCATTT
Found at i:70902463 original size:19 final size:19
Alignment explanation
Indices: 70902427--70902463 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
70902417 CAGCCCATCA
*
70902427 GGCCCATTTAGCCCATTCC
1 GGCCCATTTAGCCAATTCC
*
70902446 GGCCCATTTGGCCAATTC
1 GGCCCATTTAGCCAATTC
70902464 TCAACCCAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.38, G:0.19, T:0.27
Consensus pattern (19 bp):
GGCCCATTTAGCCAATTCC
Found at i:70906432 original size:43 final size:42
Alignment explanation
Indices: 70906366--70906522 Score: 181
Period size: 43 Copynumber: 3.7 Consensus size: 42
70906356 AGCTCGTACA
* *
70906366 ATGCCAAAGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAATAT-G
* * *
70906409 ATGCCACTGTCCCAGACAAGGTCTTACATGAAATCAAATATG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAATATG
**
70906451 ATGCCAATGTTGCAGACATGGTCTTACATGTAAATCTCAAAT-TG
1 ATGCCAATGTCCCAGACATGGTCTTACATGT-AA--TCAAATATG
* **
70906495 ATGCCAACGTCCCAGATGTGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
70906523 CGAAATCACA
Statistics
Matches: 96, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
42 27 0.28
43 38 0.40
44 25 0.26
45 6 0.06
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAATATG
Found at i:70906528 original size:86 final size:85
Alignment explanation
Indices: 70906378--70906535 Score: 205
Period size: 86 Copynumber: 1.8 Consensus size: 85
70906368 GCCAAAGTCC
* *
70906378 CAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAAGGTCTTACATGAAAT
1 CAGACATGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAAGGTCTTACACGAAAT
70906443 CAAATATGATGCCAATGTTG
66 CAAATATGATGCCAATGTTG
***
70906463 CAGACATGGTCTTACATGTAAATCTCAAAT-T-GATGCCAAC-GTCCCAGATGTGGTCTTACACG
1 CAGACATGGTCTTACATGT-AA--TCAAATATCGATGCC-ACTGTCCCAGACAAGGTCTTACACG
*
70906525 AAATCACATAT
62 AAATCAAATAT
70906536 CGGAGTCCTA
Statistics
Matches: 63, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
85 18 0.29
86 36 0.57
87 3 0.05
88 6 0.10
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (85 bp):
CAGACATGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAAGGTCTTACACGAAAT
CAAATATGATGCCAATGTTG
Found at i:70908049 original size:16 final size:16
Alignment explanation
Indices: 70908028--70908086 Score: 66
Period size: 16 Copynumber: 3.7 Consensus size: 16
70908018 TTAATCACTT
70908028 TAATATTAAATTAATA
1 TAATATTAAATTAATA
* *
70908044 TAATATT-TATTAAGA
1 TAATATTAAATTAATA
* *
70908059 TAAATATTATATTAATT
1 T-AATATTAAATTAATA
70908076 TAATATTAAAT
1 TAATATTAAAT
70908087 CTTATTAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
15 7 0.19
16 22 0.61
17 7 0.19
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (16 bp):
TAATATTAAATTAATA
Found at i:70908070 original size:21 final size:20
Alignment explanation
Indices: 70908031--70908071 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
70908021 ATCACTTTAA
*
70908031 TATTAAATTAATATAATATT
1 TATTAAATAAATATAATATT
*
70908051 TATTAAGATAAATATTATATT
1 TATTAA-ATAAATATAATATT
70908072 AATTTAATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (20 bp):
TATTAAATAAATATAATATT
Found at i:70908078 original size:5 final size:6
Alignment explanation
Indices: 70908027--70908084 Score: 56
Period size: 5 Copynumber: 10.7 Consensus size: 6
70908017 GTTAATCACT
* *
70908027 TTAATA TTAA-A TTAATA -TAATA TT--TA TTAAGA TAAATA TT-ATA
1 TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA
70908070 TTAAT- TTAATA TTAA
1 TTAATA TTAATA TTAA
70908085 ATCTTATTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
4 4 0.10
5 20 0.48
6 18 0.43
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (6 bp):
TTAATA
Found at i:70909955 original size:19 final size:19
Alignment explanation
Indices: 70909931--70909973 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
70909921 GTCGCACAAT
70909931 GTGCATACAAG-CACACGAA
1 GTGCAT-CAAGACACACGAA
**
70909950 GTGCATCTTGACACACGAA
1 GTGCATCAAGACACACGAA
70909969 GTGCA
1 GTGCA
70909974 AATCTGACAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 2 0.10
19 19 0.90
ACGTcount: A:0.35, C:0.26, G:0.23, T:0.16
Consensus pattern (19 bp):
GTGCATCAAGACACACGAA
Found at i:70909983 original size:20 final size:19
Alignment explanation
Indices: 70909942--70909987 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
70909932 TGCATACAAG
70909942 CACACGAAGTGCATCTTGA
1 CACACGAAGTGCATCTTGA
70909961 CACACGAAGTGCAAATC-TGA
1 CACACGAAGTGC--ATCTTGA
70909981 CACACGA
1 CACACGA
70909988 GGTGGATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 12 0.48
20 10 0.40
21 3 0.12
ACGTcount: A:0.37, C:0.28, G:0.20, T:0.15
Consensus pattern (19 bp):
CACACGAAGTGCATCTTGA
Found at i:70919282 original size:27 final size:27
Alignment explanation
Indices: 70919226--70919326 Score: 139
Period size: 27 Copynumber: 3.6 Consensus size: 27
70919216 GTACGCCGTC
70919226 AAGGCATTCCTTTCATTGTATATTGCCACA
1 AAGGCATTCCTTTCA---TATATTGCCACA
*
70919256 AAGGCATTCCTTTCATATATTGTCACA
1 AAGGCATTCCTTTCATATATTGCCACA
* *
70919283 AAGACATTCGTTTCATATATTGCCACA
1 AAGGCATTCCTTTCATATATTGCCACA
*
70919310 AAGGCATTCTTTTCATA
1 AAGGCATTCCTTTCATA
70919327 AGCTGTTTAA
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 50 0.77
30 15 0.23
ACGTcount: A:0.30, C:0.22, G:0.12, T:0.37
Consensus pattern (27 bp):
AAGGCATTCCTTTCATATATTGCCACA
Found at i:70921220 original size:43 final size:43
Alignment explanation
Indices: 70921149--70921321 Score: 190
Period size: 43 Copynumber: 4.1 Consensus size: 43
70921139 ACATAAAGCT
* * * *
70921149 CATA-CAATGCC-ATATCCCAGATATGGTCTTACATGTTATCA
1 CATATCAATGCCAATGTCCCAAACATGGTCTTACATGTAATCA
* * * * *
70921190 CATATCGATGCCACTGTCCCAAACAGGGTCTTACACGAAATCA
1 CATATCAATGCCAATGTCCCAAACATGGTCTTACATGTAATCA
* * *
70921233 TATAACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
1 CATATCAATGCCAATGTCCCAAACATGGTCTTACATGTAATCA
* *
70921276 AACTA-CAATGCCAATGTCCCAACCATGGTCTTACATGTAATCA
1 CA-TATCAATGCCAATGTCCCAAACATGGTCTTACATGTAATCA
70921319 CAT
1 CAT
70921322 CTCGATAATC
Statistics
Matches: 108, Mismatches: 21, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
41 4 0.04
42 7 0.06
43 95 0.88
44 2 0.02
ACGTcount: A:0.34, C:0.27, G:0.13, T:0.27
Consensus pattern (43 bp):
CATATCAATGCCAATGTCCCAAACATGGTCTTACATGTAATCA
Found at i:70921318 original size:86 final size:85
Alignment explanation
Indices: 70921152--70921310 Score: 221
Period size: 86 Copynumber: 1.9 Consensus size: 85
70921142 TAAAGCTCAT
* * * * *
70921152 ACAATGCCATATCCCAGATATGGTCTTACATGTTATCACATATCGATGCCACTGTCCCAAACAGG
1 ACAATGCCATATCCCAGACATGGTCTTACATGTAATCAAATATCAATGCCAATGTCCCAAACAGG
70921217 GTCTTACACGAAATCATATA
66 GTCTTACACGAAATCATATA
* *
70921237 ACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAACTA-CAATGCCAATGTCCCAACCA
1 ACAATGCC-ATATCCCAGACATGGTCTTACATGTAATCAAA-TATCAATGCCAATGTCCCAAACA
*
70921301 TGGTCTTACA
64 GGGTCTTACA
70921311 TGTAATCACA
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
85 8 0.12
86 54 0.84
87 2 0.03
ACGTcount: A:0.33, C:0.27, G:0.14, T:0.26
Consensus pattern (85 bp):
ACAATGCCATATCCCAGACATGGTCTTACATGTAATCAAATATCAATGCCAATGTCCCAAACAGG
GTCTTACACGAAATCATATA
Found at i:70924784 original size:19 final size:19
Alignment explanation
Indices: 70924760--70924799 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
70924750 AAATAAATGT
70924760 GTTAGATTAACATTTTTTG
1 GTTAGATTAACATTTTTTG
70924779 GTTAGATTAACATTTTTTG
1 GTTAGATTAACATTTTTTG
70924798 GT
1 GT
70924800 ATTGGGATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.25, C:0.05, G:0.17, T:0.53
Consensus pattern (19 bp):
GTTAGATTAACATTTTTTG
Found at i:70929907 original size:42 final size:42
Alignment explanation
Indices: 70929860--70929950 Score: 164
Period size: 42 Copynumber: 2.2 Consensus size: 42
70929850 TGTGAACATT
* *
70929860 CCGTGTGCCTCACATGGTAACTATACACGCCCATGTCGTAGG
1 CCGTGTGCCTCACATGGTAACTAGACACGCCCATGTCATAGG
70929902 CCGTGTGCCTCACATGGTAACTAGACACGCCCATGTCATAGG
1 CCGTGTGCCTCACATGGTAACTAGACACGCCCATGTCATAGG
70929944 CCGTGTG
1 CCGTGTG
70929951 AAAACAGGGT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (42 bp):
CCGTGTGCCTCACATGGTAACTAGACACGCCCATGTCATAGG
Found at i:70934388 original size:117 final size:117
Alignment explanation
Indices: 70934182--70934433 Score: 468
Period size: 117 Copynumber: 2.2 Consensus size: 117
70934172 ATGTGCCAGC
*
70934182 CCGTGTGCTCCACACGGTCAATAGACACGCCTGTATGTTTAGGCCATGTCAAAACTGTAGGGTAT
1 CCGTGTGCCCCACACGGTCAATAGACACGCCTGTATGTTTAGGCCATGTCAAAACTGTAGGGTAT
*
70934247 ATTGCCTTAATTCGAAAGGGTACTCCAAGGGACACACGGCCATATAACATAA
66 ACTGCCTTAATTCGAAAGGGTACTCCAAGGGACACACGGCCATATAACATAA
70934299 CCGTGTGCCCCACACGGTCAATAGACACGCCTGTATGTTTAGGCCATGTCAAAACTGTAGGGTAT
1 CCGTGTGCCCCACACGGTCAATAGACACGCCTGTATGTTTAGGCCATGTCAAAACTGTAGGGTAT
70934364 ACTGCCTTAATTCGAAAGGGTACTCCAAGGGACACACGGCCATATAACATAA
66 ACTGCCTTAATTCGAAAGGGTACTCCAAGGGACACACGGCCATATAACATAA
* *
70934416 CCGTGTGTCACACACGGT
1 CCGTGTGCCCCACACGGT
70934434 TGAGACACGC
Statistics
Matches: 131, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
117 131 1.00
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (117 bp):
CCGTGTGCCCCACACGGTCAATAGACACGCCTGTATGTTTAGGCCATGTCAAAACTGTAGGGTAT
ACTGCCTTAATTCGAAAGGGTACTCCAAGGGACACACGGCCATATAACATAA
Found at i:70944181 original size:43 final size:43
Alignment explanation
Indices: 70944120--70944224 Score: 140
Period size: 43 Copynumber: 2.4 Consensus size: 43
70944110 CAATGTCGTA
** * *
70944120 TCCCAGATATGGTCTTACATGTTATCACA-TATTGATGCCATTG
1 TCCCAGATATGGTCTTACATGAAATCA-ATTATCGATGCCAATG
*
70944163 TCCCAGATAGGGTCTTACATGAAATCAATTATCGATGCCAATG
1 TCCCAGATATGGTCTTACATGAAATCAATTATCGATGCCAATG
*
70944206 TCCCAGACATGGTCTTACA
1 TCCCAGATATGGTCTTACA
70944225 CATAATCACA
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 1 0.02
43 53 0.98
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (43 bp):
TCCCAGATATGGTCTTACATGAAATCAATTATCGATGCCAATG
Found at i:70944232 original size:43 final size:43
Alignment explanation
Indices: 70944120--70944284 Score: 129
Period size: 43 Copynumber: 3.8 Consensus size: 43
70944110 CAATGTCGTA
* ** * * *
70944120 TCCCAGATATGGTCTTACATGTTATCACATATTGATGCCATTG
1 TCCCAGACATGGTCTTACACATAATCACATATCGATGCCAATG
* * *
70944163 TCCCAGATAGGGTCTTACATGA-AATCA-ATTATCGATGCCAATG
1 TCCCAGACATGGTCTTACA-CATAATCACA-TATCGATGCCAATG
* *
70944206 TCCCAGACATGGTCTTACACATAATCACA-ATACAATGTCAATG
1 TCCCAGACATGGTCTTACACATAATCACATAT-CGATGCCAATG
*** ** *
70944249 TTGTAGACATGGTCTTACATGTAATCACATCTCGAT
1 TCCCAGACATGGTCTTACACATAATCACATATCGAT
70944285 AATCTAATGT
Statistics
Matches: 98, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
42 4 0.04
43 92 0.94
44 2 0.02
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.32
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACATAATCACATATCGATGCCAATG
Found at i:70947383 original size:23 final size:23
Alignment explanation
Indices: 70947326--70947434 Score: 134
Period size: 23 Copynumber: 4.7 Consensus size: 23
70947316 GATATATCAT
* **
70947326 CTCGTAAGAGCTTACTGTTTTTAG
1 CTCGTATGAGCTTACTG-TTCAAG
*
70947350 CTCAT-TGGAGCTTACTGTTCAAG
1 CTCGTAT-GAGCTTACTGTTCAAG
70947373 CTCGTATGAGCTTACTGTTCAAG
1 CTCGTATGAGCTTACTGTTCAAG
70947396 CTCGTATGAGCTTACTGTTC-AG
1 CTCGTATGAGCTTACTGTTCAAG
70947418 CTCG-ATAGAGCTTACTG
1 CTCGTAT-GAGCTTACTG
70947435 ATTATGGCTC
Statistics
Matches: 77, Mismatches: 5, Indels: 8
0.86 0.06 0.09
Matches are distributed among these distances:
21 2 0.03
22 16 0.21
23 44 0.57
24 15 0.19
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (23 bp):
CTCGTATGAGCTTACTGTTCAAG
Found at i:70950587 original size:84 final size:84
Alignment explanation
Indices: 70950442--70950611 Score: 295
Period size: 84 Copynumber: 2.0 Consensus size: 84
70950432 CAATTTCTAC
*
70950442 TAGTTTTGGTGATTTTTCAAAATCACATCACTGCTACTGTCCAAAACAGTTTTATTGCTAATTCA
1 TAGTTTTGGTGATTTTTCAAAATCACATCACTGCTACTGTCCAAAACAGTTTTATTACTAATTCA
70950507 CTCTTCCACACTTTCTTTG
66 CTCTTCCACACTTTCTTTG
* **
70950526 TAGTTTTGGTGATTTTTCAAAATCACGTCACTGCTGTTGTCCAAAACAGTTTTATTACTAATTCA
1 TAGTTTTGGTGATTTTTCAAAATCACATCACTGCTACTGTCCAAAACAGTTTTATTACTAATTCA
*
70950591 CTCTTTCACACTTTCTTTG
66 CTCTTCCACACTTTCTTTG
70950610 TA
1 TA
70950612 TTAACCTCAT
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
84 81 1.00
ACGTcount: A:0.25, C:0.21, G:0.11, T:0.43
Consensus pattern (84 bp):
TAGTTTTGGTGATTTTTCAAAATCACATCACTGCTACTGTCCAAAACAGTTTTATTACTAATTCA
CTCTTCCACACTTTCTTTG
Found at i:70958560 original size:42 final size:42
Alignment explanation
Indices: 70958497--70958581 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
70958487 AAAATCATCA
*
70958497 ATCAAACAACCTTTGGGCTTACTATTTCGATATTTTTTACAT
1 ATCAAACAACCTTTGGACTTACTATTTCGATATTTTTTACAT
70958539 ATCAAACAACCTTTGGACTTACTATTTCGATATTTTTTACAT
1 ATCAAACAACCTTTGGACTTACTATTTCGATATTTTTTACAT
70958581 A
1 A
70958582 CACTTATAAG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.31, C:0.19, G:0.08, T:0.42
Consensus pattern (42 bp):
ATCAAACAACCTTTGGACTTACTATTTCGATATTTTTTACAT
Found at i:70990714 original size:31 final size:33
Alignment explanation
Indices: 70990679--70990750 Score: 87
Period size: 31 Copynumber: 2.2 Consensus size: 33
70990669 CAGCTTTTAT
70990679 AAAATATTTT-TAGAAAATCTA-CT-AACAACAG
1 AAAATATTTTATA-AAAATCTATCTAAACAACAG
* * *
70990710 AAAATATTTTATACAAATTTATCTAAACACCAG
1 AAAATATTTTATAAAAATCTATCTAAACAACAG
70990743 AAAATATT
1 AAAATATT
70990751 AACTTTTCAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
31 16 0.46
32 4 0.11
33 15 0.43
ACGTcount: A:0.51, C:0.12, G:0.04, T:0.32
Consensus pattern (33 bp):
AAAATATTTTATAAAAATCTATCTAAACAACAG
Found at i:71000188 original size:24 final size:26
Alignment explanation
Indices: 71000135--71000189 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
71000125 TATGTATGGT
*
71000135 ATTTTTATAATATAATATAATATAAT
1 ATTTTTATAATATAATATAATATAAC
*
71000161 ATTTATTA-AATATAAT-T-ATATCAC
1 ATTT-TTATAATATAATATAATATAAC
71000185 ATTTT
1 ATTTT
71000190 AAAATAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 1 0.04
24 9 0.35
25 1 0.04
26 12 0.46
27 3 0.12
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (26 bp):
ATTTTTATAATATAATATAATATAAC
Found at i:71003132 original size:67 final size:69
Alignment explanation
Indices: 71003053--71003203 Score: 157
Period size: 70 Copynumber: 2.2 Consensus size: 69
71003043 TGATTCATCA
* *
71003053 TCTTGGCGGACTT-TAC-CTGACATCATAGCCCAGCTAT-GATCTTACACAGTATA-CCCTATGT
1 TCTTGGTGGACTTCTACTCTGACACCATAGCCCAGCTATAG-TCTTACACAGTATATCCC-ATGT
71003114 TTAATG
64 TTAATG
* * *** * *
71003120 TCTTGGTGGACTTCTTCTTTTGTTGCCATAGTCTAGCTATAGTCTTACACAGTATATCCCATGTT
1 TCTTGGTGGACTTCTAC-TCTGACACCATAGCCCAGCTATAGTCTTACACAGTATATCCCATGTT
71003185 TAATG
65 TAATG
*
71003190 TCCTGGTGGACTTC
1 TCTTGGTGGACTTC
71003204 CTTTGTTAAT
Statistics
Matches: 69, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
67 12 0.17
68 2 0.03
70 51 0.74
71 4 0.06
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (69 bp):
TCTTGGTGGACTTCTACTCTGACACCATAGCCCAGCTATAGTCTTACACAGTATATCCCATGTTT
AATG
Found at i:71013319 original size:40 final size:40
Alignment explanation
Indices: 71013236--71013421 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
71013226 TTGAATGATG
* * * *
71013236 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
71013276 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
71013316 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
71013356 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
71013397 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
71013422 AACGAGTAGC
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 1 0.01
40 122 0.92
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:71013428 original size:80 final size:79
Alignment explanation
Indices: 71013289--71013454 Score: 228
Period size: 80 Copynumber: 2.1 Consensus size: 79
71013279 GGACTAAGAT
* **
71013289 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCT
*
71013353 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
*
71013369 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCT
* *
71013433 ATATCCGGTTAAATT
65 AAATCCGGTTAAATC
71013448 CCGAAGG
1 CCGAAGG
71013455 TACGTGATTT
Statistics
Matches: 77, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
79 16 0.21
80 59 0.77
81 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAATC
Done.