Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 218 of 322
Found at i:72095645 original size:16 final size:16
Alignment explanation
Indices: 72095626--72095659 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
72095616 ACCTTAGATT
*
72095626 AGCTCCCCCTTCGAAG
1 AGCTCACCCTTCGAAG
72095642 AGCTCACCCTTCGAAG
1 AGCTCACCCTTCGAAG
72095658 AG
1 AG
72095660 TCGATCAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.38, G:0.21, T:0.18
Consensus pattern (16 bp):
AGCTCACCCTTCGAAG
Found at i:72097957 original size:94 final size:92
Alignment explanation
Indices: 72097748--72097972 Score: 217
Period size: 94 Copynumber: 2.4 Consensus size: 92
72097738 GGGGTAAGGT
* *
72097748 GCCGATGCCATGTCCTAGACATGGTCTTACACT-G-ACACATTTCATAGCTGATGCATGTCCCAG
1 GCCGATG-CATGTCCTAGACAT-GTCTTACACTAGCACACATCTCATAGCCGATGCATGTCCCAG
* *
72097811 ACATGTCTTACACTGGTTTACATTTCGAG
64 ACATGTCTTACACTGGTCTACATATCGAG
* * * * * * *
72097840 GCCAATGTATGTCCCAAATATGTCTTACACTAGCACTCGTCTCA-ATGCCGATGCCATGTCCCAG
1 GCCGATGCATGTCCTAGACATGTCTTACACTAGCACACATCTCATA-GCCGATG-CATGTCCCAG
* * *
72097904 ACATGGTCTTATATTGGCTCT-CATAAT-GTG
64 ACAT-GTCTTACACTGG-TCTACAT-ATCGAG
*
72097934 GCCGATGCATGTCCTAGACATGTCTTACACTAGCTCACA
1 GCCGATGCATGTCCTAGACATGTCTTACACTAGCACACA
72097973 CAAATGACCC
Statistics
Matches: 104, Mismatches: 22, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
90 10 0.10
91 12 0.12
92 19 0.18
93 14 0.13
94 46 0.44
95 3 0.03
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (92 bp):
GCCGATGCATGTCCTAGACATGTCTTACACTAGCACACATCTCATAGCCGATGCATGTCCCAGAC
ATGTCTTACACTGGTCTACATATCGAG
Found at i:72103737 original size:10 final size:10
Alignment explanation
Indices: 72103692--72103751 Score: 61
Period size: 10 Copynumber: 6.0 Consensus size: 10
72103682 TAATTTTAGG
72103692 ATTTAT-TTT
1 ATTTATCTTT
72103701 CATTTATCTTT
1 -ATTTATCTTT
*
72103712 AATTATCTTT
1 ATTTATCTTT
*
72103722 AATTATCTTT
1 ATTTATCTTT
*
72103732 GTTTAT-TTGT
1 ATTTATCTT-T
72103742 ATTTATCTTT
1 ATTTATCTTT
72103752 TAGAATTTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
9 2 0.05
10 36 0.84
11 5 0.12
ACGTcount: A:0.22, C:0.08, G:0.03, T:0.67
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:72104503 original size:40 final size:40
Alignment explanation
Indices: 72104427--72104506 Score: 99
Period size: 40 Copynumber: 2.0 Consensus size: 40
72104417 TTGAAATTCC
* ***
72104427 AATCAAAACTTTTAATTCTGTTTTTTATTTTATTTTTTCA
1 AATCAAAACTTTTAATTATGTTTTTTAAAATATTTTTTCA
*
72104467 AATCAAAACTTTTAATTATATTTTTTTAAAAT-TTTTTTCA
1 AATCAAAACTTTTAATTAT-GTTTTTTAAAATATTTTTTCA
72104507 GGTATGCTGT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
40 26 0.76
41 8 0.24
ACGTcount: A:0.33, C:0.09, G:0.01, T:0.57
Consensus pattern (40 bp):
AATCAAAACTTTTAATTATGTTTTTTAAAATATTTTTTCA
Found at i:72105621 original size:40 final size:40
Alignment explanation
Indices: 72105289--72105614 Score: 568
Period size: 40 Copynumber: 8.2 Consensus size: 40
72105279 AACCCAAGTA
* *
72105289 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
72105328 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
72105368 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
72105408 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
72105448 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
72105488 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
72105528 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
72105568 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
72105608 CCTTCGG
1 CCTTCGG
72105615 ATCTTAGTCC
Statistics
Matches: 279, Mismatches: 4, Indels: 7
0.96 0.01 0.02
Matches are distributed among these distances:
39 14 0.05
40 263 0.94
41 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:72107044 original size:13 final size:13
Alignment explanation
Indices: 72107028--72107055 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
72107018 TTTATTATTT
72107028 TTAACACAAAATA
1 TTAACACAAAATA
72107041 TTAACACAAAATA
1 TTAACACAAAATA
72107054 TT
1 TT
72107056 TATAATATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (13 bp):
TTAACACAAAATA
Found at i:72108994 original size:76 final size:75
Alignment explanation
Indices: 72108831--72109001 Score: 202
Period size: 76 Copynumber: 2.3 Consensus size: 75
72108821 AAATTATGCA
* *
72108831 AAATATGTTATGAATTGAGACATCACATAAATACAAATTTTTTTCTTTAAACTGAACCACTATAA
1 AAATATGTTATGAATTGAGACATCACACAAATACAAATTTTTTTCTTTAAACTAAACCACTATAA
*
72108896 TAAACTATGT
66 CAAACTATGT
* * * ** *
72108906 AAAATATATTATGAATTGAGACATGACACAAATTCAATATTTTTTTTCTTTTAAGTTAAATCACT
1 -AAATATGTTATGAATTGAGACATCACACAAATACAA-A-TTTTTTTC-TTTAAACTAAACCACT
*
72108971 GTAACAAACTATGT
62 ATAACAAACTATGT
72108985 -AA-ATGTTATGAATTGAG
1 AAATATGTTATGAATTGAG
72109002 GCACGAGAAA
Statistics
Matches: 81, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
76 46 0.57
77 3 0.04
78 8 0.10
79 24 0.30
ACGTcount: A:0.42, C:0.11, G:0.10, T:0.37
Consensus pattern (75 bp):
AAATATGTTATGAATTGAGACATCACACAAATACAAATTTTTTTCTTTAAACTAAACCACTATAA
CAAACTATGT
Found at i:72112250 original size:31 final size:31
Alignment explanation
Indices: 72112178--72112251 Score: 103
Period size: 31 Copynumber: 2.4 Consensus size: 31
72112168 TTAACAATAA
72112178 AATAATTAAAATTGACAACTTATTTCATAGG
1 AATAATTAAAATTGACAACTTATTTCATAGG
* * * *
72112209 AGTTATTAAAATTGACAACTTATTTTATATG
1 AATAATTAAAATTGACAACTTATTTCATAGG
*
72112240 AATAACTAAAAT
1 AATAATTAAAAT
72112252 AACAATTTTT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (31 bp):
AATAATTAAAATTGACAACTTATTTCATAGG
Found at i:72113598 original size:31 final size:32
Alignment explanation
Indices: 72113558--72113632 Score: 100
Period size: 31 Copynumber: 2.4 Consensus size: 32
72113548 AAAATTTACA
* **
72113558 ATTT-AGTCATTAAATTATTTGAAAG-TTTTT
1 ATTTAAGTCATTAAACTATTCAAAAGTTTTTT
*
72113588 ATTTAAGTCATTGAACTATTCAAAAGTTTTTT
1 ATTTAAGTCATTAAACTATTCAAAAGTTTTTT
72113620 ATTTAAGTCATTA
1 ATTTAAGTCATTA
72113633 GATTGTTAAG
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
30 4 0.11
31 17 0.45
32 17 0.45
ACGTcount: A:0.35, C:0.07, G:0.09, T:0.49
Consensus pattern (32 bp):
ATTTAAGTCATTAAACTATTCAAAAGTTTTTT
Found at i:72116954 original size:25 final size:25
Alignment explanation
Indices: 72116926--72116977 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
72116916 TTTGGCTTGA
*
72116926 CATTTACTAAGCAATATCAGATATT
1 CATTTACTAAGCAATATCAAATATT
* *
72116951 CATTTATTAGGCAATATCAAATATT
1 CATTTACTAAGCAATATCAAATATT
72116976 CA
1 CA
72116978 AATTATTCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.37
Consensus pattern (25 bp):
CATTTACTAAGCAATATCAAATATT
Found at i:72123597 original size:31 final size:29
Alignment explanation
Indices: 72123571--72123631 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 29
72123561 CTAAAATATA
*
72123571 ATAATATTTT-AATATAAGTAATTAAAAT
1 ATAATATTTTAAATATAAATAATTAAAAT
72123599 ATAATATTTTAAATATAAATAATTAAAAT
1 ATAATATTTTAAATATAAATAATTAAAAT
72123628 ATAA
1 ATAA
72123632 ACTATTATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 10 0.32
29 21 0.68
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (29 bp):
ATAATATTTTAAATATAAATAATTAAAAT
Found at i:72123614 original size:14 final size:14
Alignment explanation
Indices: 72123562--72123631 Score: 68
Period size: 15 Copynumber: 4.7 Consensus size: 14
72123552 ACGTAGTGAC
72123562 TAAAATATAATAATAT
1 TAAAATATAAT-A-AT
**
72123578 TTTAATATAAGTAAT
1 TAAAATATAA-TAAT
*
72123593 TAAAATATAATATT
1 TAAAATATAATAAT
*
72123607 TTAAATATAAATAAT
1 TAAAATAT-AATAAT
72123622 TAAAATATAA
1 TAAAATATAA
72123632 ACTATTATAA
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
14 12 0.27
15 22 0.50
16 9 0.20
17 1 0.02
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (14 bp):
TAAAATATAATAAT
Found at i:72123632 original size:15 final size:15
Alignment explanation
Indices: 72123581--72123632 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
72123571 ATAATATTTT
*
72123581 AATATAAGTAATTAA
1 AATATAAATAATTAA
* *
72123596 AATAT-AATATTTTA
1 AATATAAATAATTAA
72123610 AATATAAATAATTAA
1 AATATAAATAATTAA
72123625 AATATAAA
1 AATATAAA
72123633 CTATTATAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
14 11 0.35
15 20 0.65
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (15 bp):
AATATAAATAATTAA
Found at i:72126427 original size:15 final size:15
Alignment explanation
Indices: 72126399--72126435 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
72126389 TACTAGTGCC
* *
72126399 CCACCCCCTTCAAGA
1 CCACCACCTCCAAGA
72126414 CCACCACCTCCAAGA
1 CCACCACCTCCAAGA
72126429 CCACCAC
1 CCACCAC
72126436 GAGTTTCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.30, C:0.57, G:0.05, T:0.08
Consensus pattern (15 bp):
CCACCACCTCCAAGA
Found at i:72133440 original size:158 final size:159
Alignment explanation
Indices: 72132902--72134124 Score: 1785
Period size: 160 Copynumber: 7.7 Consensus size: 159
72132892 GAGTTTTTAA
* * * *
72132902 GGTTTAGGGTTTTAGTATTTTTT-AAGAAAAAATTAATTTAATTAGAATTGAAGGTTAATTAATT
1 GGTTTAGGATTTTAGTATTTTTTAAAGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATT
* *
72132966 AAATTAACTATGAAAAT---AAAAA--AATTAAATTAGGGTTTAGGGTTTTTTAAGGTTAGGATT
66 AAATTAACTATGAAAATAAAAAAAATCAATTAAATTAGGGTTTAAGGTTTTTTAAGGTTAGGGTT
*
72133026 TTTGATAGTTTTAGGATT-GAGGTTTTAGT
131 TTTGATTGTTTTAGGATTAG-GGTTTTAGT
* * *
72133055 GGTTTAGAATTTTTGT-GTTTTTAAAGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATT
1 GGTTTAGGATTTTAGTATTTTTTAAAGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATT
* *
72133119 AAATTAACTATGAAAAT--AAAAAATAAATTAAATTAGGGTTTAAGGTTTTTTAAGGTTAGGGAT
66 AAATTAACTATGAAAATAAAAAAAATCAATTAAATTAGGGTTTAAGGTTTTTTAAGGTTAGGGTT
*
72133182 TTTGATTGTTTTAGGATCAGGGTTTTAGT
131 TTTGATTGTTTTAGGATTAGGGTTTTAGT
* * * *
72133211 GGTTTTGGATTTTAGCA-TTTTTAAGGGAAAAATTAATTTAATTAGAGTTGATGGTTAATTAATT
1 GGTTTAGGATTTTAGTATTTTTTAAAGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATT
* *
72133275 AAATTAACTATGAAAATAAAAAAAAT-AACTAAATTAGGGTTTAAGGTTTTTTAAGGTTAGGGGT
66 AAATTAACTATGAAAATAAAAAAAATCAATTAAATTAGGGTTTAAGGTTTTTTAAGGTTAGGGTT
* * **
72133339 TTTGATTGTTTTAAGATCAAAGTTTTAGT
131 TTTGATTGTTTTAGGATTAGGGTTTTAGT
* * *
72133368 GGTTTTGGATTTTAGTGTTTTTTAAGGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATT
1 GGTTTAGGATTTTAGTATTTTTTAAAGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATT
* * * *
72133433 AAATTAACTATGAAAATAAAAAAAAAATCAATTAAATTAGGGTTTAAAGTTTTTTTATGATTAAG
66 AAATTAACTATGAAAAT--AAAAAAAATCAATTAAATTAGGGTTT-AAGGTTTTTTAAGGTTAGG
*
72133498 GTTTTTGATTGTTTTAGGATCAGGGTTTTAGT
128 GTTTTTGATTGTTTTAGGATTAGGGTTTTAGT
* *
72133530 GGTTTAGGGTTTTAGTA-TTTTT-AAGGGAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATT
1 GGTTTAGGATTTTAGTATTTTTTAAAGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATT
* * * *
72133593 AAATTAACTATGAAAATAAAAAAAAATCAATTAAATTAGGGTTTAGGGTTTTCTAAAGTTACGGT
66 AAATTAACTATGAAAAT-AAAAAAAATCAATTAAATTAGGGTTTAAGGTTTTTTAAGGTTAGGGT
*
72133658 TTTCGATTGTTTTAGGATTAGGGTTTTAGT
130 TTTTGATTGTTTTAGGATTAGGGTTTTAGT
* * *
72133688 GGTTTAGAATTTTTGTATTTTCTAAAGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATT
1 GGTTTAGGATTTTAGTATTTTTTAAAGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATT
* *
72133753 AAATTAACTATGAAAATAAAAAAAAATCAATTAAATTAGGGTTTAGGGTTTTTTAAAGTTAGGGT
66 AAATTAACTATGAAAAT-AAAAAAAATCAATTAAATTAGGGTTTAAGGTTTTTTAAGGTTAGGGT
72133818 TTTTGATTGTTTTAGGATTAGGGTTTTAGT
130 TTTTGATTGTTTTAGGATTAGGGTTTTAGT
* *
72133848 GGTTTAGAATTTTTGTATTTTTTAAAGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATT
1 GGTTTAGGATTTTAGTATTTTTTAAAGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATT
* * *
72133913 AAATTAACTATGAAAAT-AAAAAAGTCAATTAAATTAGGGTTTAAGATTTTTTAAAGTTAGGGTT
66 AAATTAACTATGAAAATAAAAAAAATCAATTAAATTAGGGTTTAAGGTTTTTTAAGGTTAGGGTT
*
72133977 TTTGATTGTTTTAGGATTAAGGTTTTAGT
131 TTTGATTGTTTTAGGATTAGGGTTTTAGT
* *
72134006 GGTTTAAGG-TTTTTGTGTTTTTTAAAGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAAT
1 GGTTT-AGGATTTTAGTATTTTTTAAAGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAAT
* * *
72134070 TAAATTAACTATGAAATTAAAAAAAATTAATTAAATTAGGGTTTAGGGTTTTTTA
65 TAAATTAACTATGAAAATAAAAAAAATCAATTAAATTAGGGTTTAAGGTTTTTTA
72134125 GAGTTTATTA
Statistics
Matches: 984, Mismatches: 69, Indels: 28
0.91 0.06 0.03
Matches are distributed among these distances:
152 5 0.01
153 68 0.07
154 5 0.01
156 134 0.14
157 78 0.08
158 274 0.28
159 65 0.07
160 278 0.28
161 20 0.02
162 57 0.06
ACGTcount: A:0.36, C:0.02, G:0.19, T:0.43
Consensus pattern (159 bp):
GGTTTAGGATTTTAGTATTTTTTAAAGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATT
AAATTAACTATGAAAATAAAAAAAATCAATTAAATTAGGGTTTAAGGTTTTTTAAGGTTAGGGTT
TTTGATTGTTTTAGGATTAGGGTTTTAGT
Found at i:72133578 original size:318 final size:317
Alignment explanation
Indices: 72132902--72134123 Score: 1808
Period size: 318 Copynumber: 3.9 Consensus size: 317
72132892 GAGTTTTTAA
* * * *
72132902 GGTTTAGGGTTTTAGTATTTTTTAAGAAAAAATTAATTTAATTAGAATTGAAGGTTAATTAATTA
1 GGTTTAGGATTTTAGTATTTTTTAAGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATTA
* * **
72132967 AATTAACTATGAAAAT--AAAAA--AATTAAATTAGGGTTTAGGGTTTTTTAAGGTTAGGATTTT
66 AATTAACTATGAAAATAAAAAAATCAATTAAATTAGGGTTTAAGGTTTTTTAAAGTTAGGGGTTT
* *
72133028 TGATAGTTTTAGGATTGAGGTTTTAGTGGTTTAGAATTTTTGTG-TTTTTAAAGGAAAAATTAAT
131 TGATTGTTTTAGGATTAAGGTTTTAGTGGTTTAGAATTTTTGTGTTTTTTAAAGGAAAAATTAAT
*
72133092 TTAATTAGAGTTGAGGGTTAATTAATTAAATTAACTATGAAAAT---AAAAAATAAATTAAATTA
196 TTAATTAGAGTTGAGGGTTAATTAATTAAATTAACTATGAAAATAAAAAAAAATCAATTAAATTA
* *
72133154 GGGTTT-AAGGTTTTTTAAGGTTAGGGATTTTGATTGTTTTAGGATCAGGGTTTTAGT
261 GGGTTTAAAGTTTTTTTAA-GTTAGGGTTTTTGATTGTTTTAGGATCAGGGTTTTAGT
* * *
72133211 GGTTTTGGATTTTAGCA-TTTTTAAGGGAAAAATTAATTTAATTAGAGTTGATGGTTAATTAATT
1 GGTTTAGGATTTTAGTATTTTTTAA-GGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATT
* *
72133275 AAATTAACTATGAAAATAAAAAAAAT-AACTAAATTAGGGTTTAAGGTTTTTTAAGGTTAGGGGT
65 AAATTAACTATGAAAAT-AAAAAAATCAATTAAATTAGGGTTTAAGGTTTTTTAAAGTTAGGGGT
* * * * * * *
72133339 TTTGATTGTTTTAAGATCAAAGTTTTAGTGGTTTTGGATTTTAGTGTTTTTTAAGGGAAAAATTA
129 TTTGATTGTTTTAGGATTAAGGTTTTAGTGGTTTAGAATTTTTGTGTTTTTTAAAGGAAAAATTA
72133404 ATTTAATTAGAGTTGAGGGTTAATTAATTAAATTAACTATGAAAATAAAAAAAAAATCAATTAAA
194 ATTTAATTAGAGTTGAGGGTTAATTAATTAAATTAACTATGAAAAT-AAAAAAAAATCAATTAAA
* *
72133469 TTAGGGTTTAAAGTTTTTTTATGATTAAGGTTTTTGATTGTTTTAGGATCAGGGTTTTAGT
258 TTAGGGTTTAAAGTTTTTTTAAG-TTAGGGTTTTTGATTGTTTTAGGATCAGGGTTTTAGT
* *
72133530 GGTTTAGGGTTTTAGTA-TTTTTAAGGGAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATTA
1 GGTTTAGGATTTTAGTATTTTTTAAGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATTA
* * *
72133594 AATTAACTATGAAAATAAAAAAAAATCAATTAAATTAGGGTTTAGGGTTTTCTAAAGTTA-CGGT
66 AATTAACTATGAAAAT--AAAAAAATCAATTAAATTAGGGTTTAAGGTTTTTTAAAGTTAGGGGT
* * *
72133658 TTTCGATTGTTTTAGGATTAGGGTTTTAGTGGTTTAGAATTTTTGTATTTTCTAAAGGAAAAATT
129 TTT-GATTGTTTTAGGATTAAGGTTTTAGTGGTTTAGAATTTTTGTGTTTTTTAAAGGAAAAATT
72133723 AATTTAATTAGAGTTGAGGGTTAATTAATTAAATTAACTATGAAAATAAAAAAAAATCAATTAAA
193 AATTTAATTAGAGTTGAGGGTTAATTAATTAAATTAACTATGAAAATAAAAAAAAATCAATTAAA
** * *
72133788 TTAGGGTTTAGGGTTTTTTAAAGTTAGGGTTTTTGATTGTTTTAGGATTAGGGTTTTAGT
258 TTAGGGTTTAAAGTTTTTTTAAGTTAGGGTTTTTGATTGTTTTAGGATCAGGGTTTTAGT
* *
72133848 GGTTTAGAATTTTTGTATTTTTTAAAGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATT
1 GGTTTAGGATTTTAGTATTTTTT-AAGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATT
* * *
72133913 AAATTAACTATGAAAATAAAAAAGTCAATTAAATTAGGGTTTAAGATTTTTTAAAGTTAGGGTTT
65 AAATTAACTATGAAAATAAAAAAATCAATTAAATTAGGGTTTAAGGTTTTTTAAAGTTAGGGGTT
*
72133978 TTGATTGTTTTAGGATTAAGGTTTTAGTGGTTTA-AGGTTTTTGTGTTTTTTAAAGGAAAAATTA
130 TTGATTGTTTTAGGATTAAGGTTTTAGTGGTTTAGA-ATTTTTGTGTTTTTTAAAGGAAAAATTA
* *
72134042 ATTTAATTAGAGTTGAGGGTTAATTAATTAAATTAACTATG-AAATTAAAAAAAATTAATTAAAT
194 ATTTAATTAGAGTTGAGGGTTAATTAATTAAATTAACTATGAAAATAAAAAAAAATCAATTAAAT
**
72134106 TAGGGTTTAGGGTTTTTT
259 TAGGGTTTAAAGTTTTTT
72134124 AGAGTTTATT
Statistics
Matches: 828, Mismatches: 66, Indels: 30
0.90 0.07 0.03
Matches are distributed among these distances:
308 7 0.01
309 67 0.08
312 5 0.01
313 72 0.09
314 63 0.08
317 40 0.05
318 262 0.32
319 128 0.15
320 184 0.22
ACGTcount: A:0.36, C:0.02, G:0.19, T:0.43
Consensus pattern (317 bp):
GGTTTAGGATTTTAGTATTTTTTAAGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATTA
AATTAACTATGAAAATAAAAAAATCAATTAAATTAGGGTTTAAGGTTTTTTAAAGTTAGGGGTTT
TGATTGTTTTAGGATTAAGGTTTTAGTGGTTTAGAATTTTTGTGTTTTTTAAAGGAAAAATTAAT
TTAATTAGAGTTGAGGGTTAATTAATTAAATTAACTATGAAAATAAAAAAAAATCAATTAAATTA
GGGTTTAAAGTTTTTTTAAGTTAGGGTTTTTGATTGTTTTAGGATCAGGGTTTTAGT
Found at i:72133590 original size:160 final size:158
Alignment explanation
Indices: 72132902--72134124 Score: 1723
Period size: 158 Copynumber: 7.7 Consensus size: 158
72132892 GAGTTTTTAA
* * * * *
72132902 GGTTTAGGGTTTTAGTATTTTTTAAGAAAAAATTAATTTAATTAGAATTGAAGGTTAATTAATTA
1 GGTTTAGGATTTTAGTATTTTTAAAGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATTA
* * *
72132967 AATTAACTATGAAAAT---AAAAA--AATTAAATTAGGGTTTAGGGTTTTTTAAGGTTAGGATTT
66 AATTAACTATGAAAATAAAAAAAATCAATTAAATTAGGGTTTAAGTTTTTTTAAGGTTAGGGTTT
* *
72133027 TTGATAGTTTTAGGAT-TGAGGTTTTAGT
131 TTGATTGTTTTAGGATCAG-GGTTTTAGT
* * *
72133055 GGTTTAGAATTTTTGTGTTTTTAAAGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATTA
1 GGTTTAGGATTTTAGTATTTTTAAAGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATTA
* * *
72133120 AATTAACTATGAAAAT--AAAAAATAAATTAAATTAGGGTTTAAGGTTTTTTAAGGTTAGGGATT
66 AATTAACTATGAAAATAAAAAAAATCAATTAAATTAGGGTTTAAGTTTTTTTAAGGTTAGGGTTT
72133183 TTGATTGTTTTAGGATCAGGGTTTTAGT
131 TTGATTGTTTTAGGATCAGGGTTTTAGT
* * * *
72133211 GGTTTTGGATTTTAGCATTTTTAAGGGAAAAATTAATTTAATTAGAGTTGATGGTTAATTAATTA
1 GGTTTAGGATTTTAGTATTTTTAAAGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATTA
* * *
72133276 AATTAACTATGAAAATAAAAAAAAT-AACTAAATTAGGGTTTAAGGTTTTTTAAGGTTAGGGGTT
66 AATTAACTATGAAAATAAAAAAAATCAATTAAATTAGGGTTTAAGTTTTTTTAAGGTTAGGGTTT
* **
72133340 TTGATTGTTTTAAGATCAAAGTTTTAGT
131 TTGATTGTTTTAGGATCAGGGTTTTAGT
* * *
72133368 GGTTTTGGATTTTAGTGTTTTTTAAGGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATT
1 GGTTTAGGATTTTAGT-ATTTTTAAAGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATT
* * *
72133433 AAATTAACTATGAAAATAAAAAAAAAATCAATTAAATTAGGGTTTAAAGTTTTTTTATGATTAAG
65 AAATTAACTATGAAAAT--AAAAAAAATCAATTAAATTAGGGTTT-AAGTTTTTTTAAGGTTAGG
72133498 GTTTTTGATTGTTTTAGGATCAGGGTTTTAGT
127 GTTTTTGATTGTTTTAGGATCAGGGTTTTAGT
* *
72133530 GGTTTAGGGTTTTAGTATTTTT-AAGGGAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATTA
1 GGTTTAGGATTTTAGTATTTTTAAAGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATTA
* * * * *
72133594 AATTAACTATGAAAATAAAAAAAAATCAATTAAATTAGGGTTTAGGGTTTTCTAAAGTTACGGTT
66 AATTAACTATGAAAAT-AAAAAAAATCAATTAAATTAGGGTTTAAGTTTTTTTAAGGTTAGGGTT
* *
72133659 TTCGATTGTTTTAGGATTAGGGTTTTAGT
130 TTTGATTGTTTTAGGATCAGGGTTTTAGT
* *
72133688 GGTTTAGAATTTTTGTATTTTCTAAAGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATT
1 GGTTTAGGATTTTAGTATTTT-TAAAGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATT
* * *
72133753 AAATTAACTATGAAAATAAAAAAAAATCAATTAAATTAGGGTTTAGGGTTTTTTAAAGTTAGGGT
65 AAATTAACTATGAAAAT-AAAAAAAATCAATTAAATTAGGGTTTAAGTTTTTTTAAGGTTAGGGT
*
72133818 TTTTGATTGTTTTAGGATTAGGGTTTTAGT
129 TTTTGATTGTTTTAGGATCAGGGTTTTAGT
* *
72133848 GGTTTAGAATTTTTGTATTTTTTAAAGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATT
1 GGTTTAGGATTTTAGTA-TTTTTAAAGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATT
* * *
72133913 AAATTAACTATGAAAAT-AAAAAAGTCAATTAAATTAGGGTTTAAGATTTTTTAAAGTTAGGGTT
65 AAATTAACTATGAAAATAAAAAAAATCAATTAAATTAGGGTTTAAGTTTTTTTAAGGTTAGGGTT
* *
72133977 TTTGATTGTTTTAGGATTAAGGTTTTAGT
130 TTTGATTGTTTTAGGATCAGGGTTTTAGT
* *
72134006 GGTTTAAGG-TTTTTGTGTTTTTTAAAGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAAT
1 GGTTT-AGGATTTTAGT-ATTTTTAAAGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAAT
* * * *
72134070 TAAATTAACTATGAAATTAAAAAAAATTAATTAAATTAGGGTTTAGGGTTTTTTA
64 TAAATTAACTATGAAAATAAAAAAAATCAATTAAATTAGGGTTTAAGTTTTTTTA
72134125 GAGTTTATTA
Statistics
Matches: 984, Mismatches: 69, Indels: 28
0.91 0.06 0.03
Matches are distributed among these distances:
153 73 0.07
154 5 0.01
156 134 0.14
157 78 0.08
158 277 0.28
159 62 0.06
160 274 0.28
161 24 0.02
162 57 0.06
ACGTcount: A:0.36, C:0.02, G:0.19, T:0.43
Consensus pattern (158 bp):
GGTTTAGGATTTTAGTATTTTTAAAGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATTA
AATTAACTATGAAAATAAAAAAAATCAATTAAATTAGGGTTTAAGTTTTTTTAAGGTTAGGGTTT
TTGATTGTTTTAGGATCAGGGTTTTAGT
Found at i:72133983 original size:23 final size:23
Alignment explanation
Indices: 72133941--72133989 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
72133931 AAAAAGTCAA
72133941 TTAAATTAGGGTTTAAGATT-TT
1 TTAAATTAGGGTTTAAGATTGTT
**
72133963 TTAAAGTTAGGGTTTTTGATTGTT
1 TTAAA-TTAGGGTTTAAGATTGTT
72133987 TTA
1 TTA
72133990 GGATTAAGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 5 0.22
23 13 0.57
24 5 0.22
ACGTcount: A:0.27, C:0.00, G:0.20, T:0.53
Consensus pattern (23 bp):
TTAAATTAGGGTTTAAGATTGTT
Found at i:72134381 original size:125 final size:126
Alignment explanation
Indices: 72134150--72134706 Score: 888
Period size: 126 Copynumber: 4.5 Consensus size: 126
72134140 ATTAACTATT
* *
72134150 AATTACGGAAAAAAGCTCCCACGTGGATGCTCTTTTGCTACAGTAGTATCTGAAAAAATAAATTT
1 AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGATAAAATAAATTT
* * * *
72134215 GAGAATATGTTTCTGAACAAATAGTGTTAAAAACGCTTCAAGAAGGATGCATTGTTAGCAA
66 GAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGAAGGATGCACTGTCAGCAA
* * *
72134276 AATTACGGAAAAAAGGTCCCATGTGGACGCTCTTTTGCTGCAGTAGTATCTGA-AAAATAAATTT
1 AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGATAAAATAAATTT
* * *
72134340 GAGAAGATGTTTCTGAACAAATAGTGTTAAAAAAGTTTCAAGAAGGATGCACTGTCAGCAA
66 GAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGAAGGATGCACTGTCAGCAA
* *
72134401 AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGATAAAATGATTTT
1 AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGATAAAATAAATTT
*
72134466 GAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGAAGGATGCACTGTCAGTAA
66 GAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGAAGGATGCACTGTCAGCAA
* * * *
72134527 AATTACGGAAAAAAGCTCCTACGTGAACGTTCTTTTGCTACAGTAGTATCTGATAAAATAATTTT
1 AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGATAAAATAAATTT
* * *
72134592 AAGAAGATGTTT-TGAATAAATAGTGTCAAAAACGCTTCAAGAAGGATGCACTGTTAGCAA
66 GAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGAAGGATGCACTGTCAGCAA
72134652 AATTACGG-AAAAAGCTCCCACGTGGACGCTC-TTTGCTACAGTAGTATCTGATAAA
1 AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGATAAA
72134707 GCCTTAAACT
Statistics
Matches: 401, Mismatches: 29, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
123 24 0.06
124 20 0.05
125 170 0.42
126 187 0.47
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (126 bp):
AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGATAAAATAAATTT
GAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGAAGGATGCACTGTCAGCAA
Found at i:72134615 original size:251 final size:251
Alignment explanation
Indices: 72134150--72134706 Score: 886
Period size: 251 Copynumber: 2.2 Consensus size: 251
72134140 ATTAACTATT
* *
72134150 AATTACGGAAAAAAGCTCCCACGTGGATGCTCTTTTGCTACAGTAGTATCTGAAAAAATAAATTT
1 AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGATAAAATAAATTT
* * * *
72134215 GAGAATATGTTTCTGAACAAATAGTGTTAAAAACGCTTCAAGAAGGATGCATTGTTAGCAAAATT
66 GAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGAAGGATGCACTGTCAGCAAAATT
* * * * *
72134280 ACGGAAAAAAGGTCCCATGTGGACGCTCTTTTGCTGCAGTAGTATCTGAAAAATAAATTTGAGAA
131 ACGGAAAAAAGCTCCCACGTGAACGCTCTTTTGCTACAGTAGTATCTGAAAAATAAATTTAAGAA
* *
72134345 GATGTTTCTGAACAAATAGTGTTAAAAAAGTTTCAAGAAGGATGCACTGTCAGCAA
196 GATGTTTCTGAACAAATAGTGTCAAAAAAGCTTCAAGAAGGATGCACTGTCAGCAA
* *
72134401 AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGATAAAATGATTTT
1 AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGATAAAATAAATTT
*
72134466 GAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGAAGGATGCACTGTCAGTAAAATT
66 GAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGAAGGATGCACTGTCAGCAAAATT
* * *
72134531 ACGGAAAAAAGCTCCTACGTGAACGTTCTTTTGCTACAGTAGTATCTGATAAAATAATTTTAAGA
131 ACGGAAAAAAGCTCCCACGTGAACGCTCTTTTGCTACAGTAGTATCTGA-AAAATAAATTTAAGA
* * *
72134596 AGATGTTT-TGAATAAATAGTGTCAAAAACGCTTCAAGAAGGATGCACTGTTAGCAA
195 AGATGTTTCTGAACAAATAGTGTCAAAAAAGCTTCAAGAAGGATGCACTGTCAGCAA
72134652 AATTACGG-AAAAAGCTCCCACGTGGACGCTC-TTTGCTACAGTAGTATCTGATAAA
1 AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGATAAA
72134707 GCCTTAAACT
Statistics
Matches: 283, Mismatches: 22, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
249 24 0.08
250 23 0.08
251 215 0.76
252 21 0.07
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (251 bp):
AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGATAAAATAAATTT
GAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGAAGGATGCACTGTCAGCAAAATT
ACGGAAAAAAGCTCCCACGTGAACGCTCTTTTGCTACAGTAGTATCTGAAAAATAAATTTAAGAA
GATGTTTCTGAACAAATAGTGTCAAAAAAGCTTCAAGAAGGATGCACTGTCAGCAA
Found at i:72138332 original size:18 final size:18
Alignment explanation
Indices: 72138306--72138340 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
72138296 GACTGGGAAA
72138306 AGGAAACATAAAAGGGTT
1 AGGAAACATAAAAGGGTT
* *
72138324 AGGATACATATAAGGGT
1 AGGAAACATAAAAGGGT
72138341 CAAGATACGC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.06, G:0.29, T:0.20
Consensus pattern (18 bp):
AGGAAACATAAAAGGGTT
Found at i:72138984 original size:14 final size:14
Alignment explanation
Indices: 72138965--72138997 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
72138955 TTATATAGGT
72138965 AATACTAAATAATA
1 AATACTAAATAATA
*
72138979 AATACTAAATATTA
1 AATACTAAATAATA
72138993 AATAC
1 AATAC
72138998 AAAACAACTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (14 bp):
AATACTAAATAATA
Found at i:72151004 original size:23 final size:24
Alignment explanation
Indices: 72150940--72151004 Score: 71
Period size: 23 Copynumber: 2.7 Consensus size: 24
72150930 CTGACGGGCT
72150940 TAAATAATTTTAAATTTTCTAAGTTA
1 TAAAT-ATTTT-AATTTTCTAAGTTA
72150966 TAAATATTTTAATTTT-TAA-TTA
1 TAAATATTTTAATTTTCTAAGTTA
* *
72150988 TAATTCATTTTACTTTT
1 TAAAT-ATTTTAATTTT
72151005 ATGCAATGAC
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
22 7 0.19
23 13 0.36
24 6 0.17
25 5 0.14
26 5 0.14
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.57
Consensus pattern (24 bp):
TAAATATTTTAATTTTCTAAGTTA
Found at i:72153284 original size:30 final size:30
Alignment explanation
Indices: 72153227--72153284 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
72153217 TTTTTGAGCA
* **
72153227 TAGGGGTAAAATGGTCATTTTGTCAAAGTT
1 TAGGGGCAAAATGGTCATTTTACCAAAGTT
*
72153257 TAGGGGCAAAATGGTTATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
72153285 ACGTGAAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.33, C:0.09, G:0.26, T:0.33
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTT
Found at i:72153771 original size:46 final size:46
Alignment explanation
Indices: 72153675--72153841 Score: 153
Period size: 46 Copynumber: 3.6 Consensus size: 46
72153665 TGAGAGCCAA
* *
72153675 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACTAGTGCTAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGCATTGAGACTAGTCCCAG
*
72153723 TGTAAGACATGTCTGGGACATGCATCGGCCTTGAGA-T-GTAACCCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCATTGAGACTAGT--CCCAG
* * * * * **
72153769 TGTAAGACATGTCTAGGACATGCACCGGC--TAAGAGTTGTGTCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCATTGAGACTAGTCCCAG
*
72153813 TGTAAGACCATGTCTGGGATATGGCATCG
1 TGTAAGA-CATGTCTGGGACAT-GCATCG
72153842 ACACGGATAG
Statistics
Matches: 102, Mismatches: 11, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
44 16 0.16
45 14 0.14
46 51 0.50
47 14 0.14
48 7 0.07
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCGGCATTGAGACTAGTCCCAG
Found at i:72154187 original size:21 final size:21
Alignment explanation
Indices: 72154162--72154206 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
72154152 TTTATATGCA
72154162 ACTTACTAAGCTTTTATGCTT
1 ACTTACTAAGCTTTTATGCTT
72154183 ACTTACTAAGCTTTTATGCTT
1 ACTTACTAAGCTTTTATGCTT
72154204 ACT
1 ACT
72154207 CCCCTTTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.24, C:0.20, G:0.09, T:0.47
Consensus pattern (21 bp):
ACTTACTAAGCTTTTATGCTT
Found at i:72160900 original size:30 final size:30
Alignment explanation
Indices: 72160843--72160900 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
72160833 TTTTAAAGCA
* * **
72160843 TAGGGGTAAAATGGTCATTTTGTCAAAGTC
1 TAGGGGCAAAATAGTCATTTTACCAAAGTC
72160873 TAGGGGCAAAATAGTCATTTTACCAAAG
1 TAGGGGCAAAATAGTCATTTTACCAAAG
72160901 ATGTGAAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAATAGTCATTTTACCAAAGTC
Found at i:72161410 original size:46 final size:45
Alignment explanation
Indices: 72161288--72161411 Score: 112
Period size: 44 Copynumber: 2.7 Consensus size: 45
72161278 TTATGAGAGC
* *
72161288 CAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGAGTG
1 CAGTGTAAGACCAT-TCTGGGACATGGCATCGGCA-TAAGACGAGTG
* * *
72161335 CTAGTGTAAGACACGTT-TGGAACAT-GCATCGGC-TAAGA-GTTGTG
1 C-AGTGTAAGAC-CATTCTGGGACATGGCATCGGCATAAGACG-AGTG
72161379 TCAGTGTAAGACCATATCTGGGACATGGCATCG
1 -CAGTGTAAGACCAT-TCTGGGACATGGCATCG
72161412 ACACAGATAG
Statistics
Matches: 63, Mismatches: 7, Indels: 15
0.74 0.08 0.18
Matches are distributed among these distances:
43 3 0.05
44 18 0.29
45 8 0.13
46 14 0.22
47 7 0.11
48 11 0.17
49 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (45 bp):
CAGTGTAAGACCATTCTGGGACATGGCATCGGCATAAGACGAGTG
Found at i:72179571 original size:3 final size:3
Alignment explanation
Indices: 72179563--72179595 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
72179553 TTTATTAACT
72179563 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
72179596 ATATATTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:72179609 original size:19 final size:20
Alignment explanation
Indices: 72179587--72179625 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
72179577 ATAATAATAA
*
72179587 TAATAATAAATATAT-TATT
1 TAATAACAAATATATATATT
72179606 TAATAACAAATATATATATT
1 TAATAACAAATATATATATT
72179626 ACAATTGGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (20 bp):
TAATAACAAATATATATATT
Found at i:72180030 original size:25 final size:27
Alignment explanation
Indices: 72179996--72180057 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 27
72179986 TGGCTTTAAT
*
72179996 TTAATTTAATTCATAATATGATATTTATAA
1 TTAA-TTAATTAATAATAT-AT-TTTATAA
72180026 TTAATTAATTTAATAATATATTTTATAA
1 TTAATTAA-TTAATAATATATTTTATAA
72180054 TTAA
1 TTAA
72180058 ATTATATATA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
28 11 0.37
29 6 0.20
30 13 0.43
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (27 bp):
TTAATTAATTAATAATATATTTTATAA
Found at i:72180064 original size:20 final size:21
Alignment explanation
Indices: 72180031--72180071 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
72180021 TATAATTAAT
*
72180031 TAATTTAATAATATAT-TTTA
1 TAATTAAATAATATATATTTA
*
72180051 TAATTAAATTATATATATTTA
1 TAATTAAATAATATATATTTA
72180072 CATGATTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
TAATTAAATAATATATATTTA
Found at i:72182607 original size:21 final size:22
Alignment explanation
Indices: 72182577--72182623 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
72182567 CTTAATTAAC
*
72182577 TAATTAAAACATTATTAAAT-T
1 TAATTAAAACATAATTAAATAT
* *
72182598 TAATTTAAACATAATTTAATAT
1 TAATTAAAACATAATTAAATAT
72182620 TAAT
1 TAAT
72182624 GGAATTCATC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (22 bp):
TAATTAAAACATAATTAAATAT
Found at i:72182999 original size:95 final size:95
Alignment explanation
Indices: 72182836--72183025 Score: 274
Period size: 95 Copynumber: 2.0 Consensus size: 95
72182826 TATCAACTCC
* * * * ** **
72182836 GTAAATATTTCTATTTTATATTTATGGACTTGGTTTATGTTTTATGGAAATGAGGTTCTAAAATC
1 GTAAATATTCCTATTTTATATTTACGAACTTAGTTTATGTTTTACAGAAATGAAATTCTAAAATC
*
72182901 ATATTTTTCAACACCATTGAAAATCGAGTT
66 ATATTTTTCAACACCATTAAAAATCGAGTT
72182931 GTAAATATTCCTATTTTATATTTACGAACTTAGTTTACTG-TTTACAGAAATGAAATTCTAAAAT
1 GTAAATATTCCTATTTTATATTTACGAACTTAGTTTA-TGTTTTACAGAAATGAAATTCTAAAAT
*
72182995 CATATTTTTTAACACCATTAAAAATCGAGTT
65 CATATTTTTCAACACCATTAAAAATCGAGTT
72183026 ATTACAGATC
Statistics
Matches: 84, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
95 82 0.98
96 2 0.02
ACGTcount: A:0.35, C:0.11, G:0.12, T:0.43
Consensus pattern (95 bp):
GTAAATATTCCTATTTTATATTTACGAACTTAGTTTATGTTTTACAGAAATGAAATTCTAAAATC
ATATTTTTCAACACCATTAAAAATCGAGTT
Found at i:72183285 original size:19 final size:19
Alignment explanation
Indices: 72183246--72183287 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
72183236 AGTTTAGTTG
* *
72183246 TATATATTAATTAATATAT
1 TATATATTAATTAAAAAAT
*
72183265 TATATATTTATTAAAAAAT
1 TATATATTAATTAAAAAAT
72183284 TATA
1 TATA
72183288 ACCTTTTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
TATATATTAATTAAAAAAT
Found at i:72183593 original size:26 final size:26
Alignment explanation
Indices: 72183541--72183592 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
72183531 ATTAAATTGT
*
72183541 AGTTTGAAAAAAAAAATCATTTAAAA
1 AGTTTGAAAAAAAAAACCATTTAAAA
72183567 AGTTTG-AAAAAAAAACCATTTAAAA
1 AGTTTGAAAAAAAAAACCATTTAAAA
72183592 A
1 A
72183593 AAACAAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.62, C:0.06, G:0.08, T:0.25
Consensus pattern (26 bp):
AGTTTGAAAAAAAAAACCATTTAAAA
Found at i:72193930 original size:19 final size:20
Alignment explanation
Indices: 72193884--72193931 Score: 55
Period size: 19 Copynumber: 2.4 Consensus size: 20
72193874 TTGTTTTATC
*
72193884 TATTTTGTTTTCTATTTTCTG
1 TATTTTCTTTTC-ATTTTCTG
72193905 T-TGTTTCTTTTC-TTTTCTG
1 TAT-TTTCTTTTCATTTTCTG
72193924 TATTTTCT
1 TATTTTCT
72193932 ATATTTCAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
19 13 0.54
20 2 0.08
21 9 0.38
ACGTcount: A:0.06, C:0.12, G:0.08, T:0.73
Consensus pattern (20 bp):
TATTTTCTTTTCATTTTCTG
Found at i:72201622 original size:3 final size:3
Alignment explanation
Indices: 72201605--72201673 Score: 102
Period size: 3 Copynumber: 23.0 Consensus size: 3
72201595 CAAAACACAA
* * *
72201605 AAT AAT AAC ATT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT GAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
72201653 AAG AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT
72201674 GGGGTTACAA
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:72201782 original size:18 final size:21
Alignment explanation
Indices: 72201758--72201802 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
72201748 AAGGAATATG
72201758 TATATATG-TAAAAA-AATAAA
1 TATATA-GATAAAAATAATAAA
*
72201778 TATATAGATAAAAATAATACA
1 TATATAGATAAAAATAATAAA
72201799 TATA
1 TATA
72201803 AAATCTAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 12 0.55
21 9 0.41
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.31
Consensus pattern (21 bp):
TATATAGATAAAAATAATAAA
Found at i:72203746 original size:44 final size:44
Alignment explanation
Indices: 72203679--72204194 Score: 311
Period size: 44 Copynumber: 11.8 Consensus size: 44
72203669 TCCACTGCAG
* * *
72203679 TCTGCTCCGCTGCAACTTTAAGGAGATAAGACTTGTAACTTCAA
1 TCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTCAA
* *
72203723 TCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTTAA
1 TCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTCAA
* ** * * * *** *
72203767 CCCACTCTACTGTAACTTC-AGAGAGATAGGATTTGCTGTGTTCAG
1 TCTGCTCCACTGCAACTTCAAG-GAGATAAGATTTG-TAACTTCAA
* * * * **
72203812 TCTGCTCTATTGCAACTTCAAAGAGATAAGAATTGTAACTTTGA
1 TCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTCAA
* * * * * * *
72203856 TCTGCTCCACTGCAACTTTAGGGAAATGAGATTTGTAGCTTTAG
1 TCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTCAA
* * * *
72203900 T-TCGCTCTACTGCAACTTC-AGAGAGATAGGATTTGCTATCTTCAG
1 TCT-GCTCCACTGCAACTTCAAG-GAGATAAGATTTG-TAACTTCAA
** * *
72203945 TCTGCTTTATTGTAACTTC-AGAGAGAT-A-A---G--ACTTCAA
1 TCTGCTCCACTGCAACTTCAAG-GAGATAAGATTTGTAACTTCAA
* * * *
72203982 TCTACTCCACCGCAACTTC-AGGAAGATAAGATTTGTAATTTTCGA
1 TCTGCTCCACTGCAACTTCAAGG-AGATAAGATTTGTAA-CTTCAA
* * * *
72204027 TCTACTCCACTGCAACTTCAGGGAGATAAGATCTATAACTTCAA
1 TCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTCAA
* ** ** *
72204071 TCTGCTCCACTGCAACTTCAAGGAGATAAAATTCACTATTTTCGA
1 TCTGCTCCACTGCAACTTCAAGGAGATAAGATT-TGTAACTTCAA
* * * * * **
72204116 TCTACTCCACTGCAACTTTAGGGAGATGAGATTAGTGGCTTCAA
1 TCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTCAA
* * *
72204160 TCTACTCCACTTCAACTT-TAGAGAGATAAGATTTG
1 TCTGCTCCACTGCAACTTCAAG-GAGATAAGATTTG
72204195 CCATATTCCA
Statistics
Matches: 360, Mismatches: 93, Indels: 38
0.73 0.19 0.08
Matches are distributed among these distances:
36 1 0.00
37 24 0.07
38 1 0.00
39 1 0.00
40 1 0.00
42 1 0.00
43 6 0.02
44 194 0.54
45 127 0.35
46 4 0.01
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (44 bp):
TCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTCAA
Found at i:72203889 original size:89 final size:89
Alignment explanation
Indices: 72203718--72203927 Score: 205
Period size: 89 Copynumber: 2.4 Consensus size: 89
72203708 GACTTGTAAC
* * * * * * *
72203718 TTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTTAACCCACTCTACTGTAAC
1 TTCAGTCTGCTCTACTGCAACTTCAAAGAGATAAGAATTGTAACTTTAACCCACTCCACTGCAAC
*
72203783 TTCAGAGAGATAGGATTTGCT-G-T
66 TTCAGAGAAATAGGATTTG-TAGCT
* * * **
72203806 GTTCAGTCTGCTCTATTGCAACTTCAAAGAGATAAGAATTGTAACTTTGATCTGCTCCACTGCAA
1 -TTCAGTCTGCTCTACTGCAACTTCAAAGAGATAAGAATTGTAACTTTAACCCACTCCACTGCAA
* *
72203871 CTTTAGGGAAAT-GAGATTTGTAGCT
65 CTTCAGAGAAATAG-GATTTGTAGCT
*
72203896 TT-AGT-TCGCTCTACTGCAACTTCAGAGAGATA
1 TTCAGTCT-GCTCTACTGCAACTTCAAAGAGATA
72203928 GGATTTGCTA
Statistics
Matches: 100, Mismatches: 17, Indels: 9
0.79 0.13 0.07
Matches are distributed among these distances:
87 1 0.01
88 28 0.28
89 70 0.70
90 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (89 bp):
TTCAGTCTGCTCTACTGCAACTTCAAAGAGATAAGAATTGTAACTTTAACCCACTCCACTGCAAC
TTCAGAGAAATAGGATTTGTAGCT
Found at i:72203917 original size:133 final size:133
Alignment explanation
Indices: 72203689--72204195 Score: 422
Period size: 133 Copynumber: 3.9 Consensus size: 133
72203679 TCTGCTCCGC
* * * *
72203689 TGCAACTTTAAGGAGATAAGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGA
1 TGCAACTTCAAAGAGATAAGAATTGTAACTTCAATCTGCTCCACTGCAACTTCAAGGAAATAAGA
* * *
72203754 TTTGTAGCTTTAACCCACTCTACTGTAACTTCAGAGAGATAGGATTTGCTGTGTTCAGTCTGCTC
66 TTTGTAGCTTTAACCCACTCTACTGCAACTTCAGAGAGATAGGATTTGCTATCTTCAGTCTGCTC
72203819 TAT
131 TAT
** * * *
72203822 TGCAACTTCAAAGAGATAAGAATTGTAACTTTGATCTGCTCCACTGCAACTTTAGGGAAATGAGA
1 TGCAACTTCAAAGAGATAAGAATTGTAACTTCAATCTGCTCCACTGCAACTTCAAGGAAATAAGA
*** * *
72203887 TTTGTAGCTTTAGTTCGCTCTACTGCAACTTCAGAGAGATAGGATTTGCTATCTTCAGTCTGCTT
66 TTTGTAGCTTTAACCCACTCTACTGCAACTTCAGAGAGATAGGATTTGCTATCTTCAGTCTGCTC
72203952 TAT
131 TAT
* * * *
72203955 TGTAACTTCAGAGAGAT---AA--G--ACTTCAATCTACTCCACCGCAACTTC-AGGAAGATAAG
1 TGCAACTTCAAAGAGATAAGAATTGTAACTTCAATCTGCTCCACTGCAACTTCAAGGAA-ATAAG
** * * * * * * * * * *
72204012 ATTTGTAATTTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-ATAACTTCAATCTGC
65 ATTTGTAGCTTT-AACCCACTCTACTGCAACTTCAGAGAGATAGGATTTGCTATCTTCAGTCTGC
* *
72204076 TCCAC
129 TCTAT
* * ** * * * * * *
72204081 TGCAACTTCAAGGAGATAA-AATTCACTATTTTCGATCTACTCCACTGCAACTTTAGGGAGATGA
1 TGCAACTTCAAAGAGATAAGAATT--GTAACTTCAATCTGCTCCACTGCAACTTCAAGGAAATAA
* * * * * * * * *
72204145 GATTAGTGGCTTCAATCTACTCCACTTCAACTTTAGAGAGATAAGATTTGC
64 GATTTGTAGCTTTAACCCACTCTACTGCAACTTCAGAGAGATAGGATTTGC
72204196 CATATTCCAA
Statistics
Matches: 296, Mismatches: 66, Indels: 23
0.77 0.17 0.06
Matches are distributed among these distances:
125 4 0.01
126 63 0.21
127 27 0.09
128 3 0.01
130 2 0.01
133 162 0.55
134 32 0.11
135 3 0.01
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (133 bp):
TGCAACTTCAAAGAGATAAGAATTGTAACTTCAATCTGCTCCACTGCAACTTCAAGGAAATAAGA
TTTGTAGCTTTAACCCACTCTACTGCAACTTCAGAGAGATAGGATTTGCTATCTTCAGTCTGCTC
TAT
Found at i:72204045 original size:45 final size:44
Alignment explanation
Indices: 72203976--72204194 Score: 199
Period size: 45 Copynumber: 4.9 Consensus size: 44
72203966 AGAGATAAGA
*
72203976 CTTCAATCTACTCCACCGCAACTTCAGGAAGATAAGATTTGTAAT
1 CTTCAATCTACTCCACTGCAACTTCAGGAAGATAAGATTTGT-AT
* * * * * *
72204021 TTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATCTATAA
1 CTTCAATCTACTCCACTGCAACTTCAGGAAGATAAGATTTGTAT
* * **
72204065 CTTCAATCTGCTCCACTGCAACTTCAAGG-AGATAAAATTCACTAT
1 CTTCAATCTACTCCACTGCAACTTC-AGGAAGATAAGATT-TGTAT
* * * * * * **
72204110 TTTCGATCTACTCCACTGCAACTTTAGGGAGATGAGATTAGTGG
1 CTTCAATCTACTCCACTGCAACTTCAGGAAGATAAGATTTGTAT
* *
72204154 CTTCAATCTACTCCACTTCAACTTTA-GAGAGATAAGATTTG
1 CTTCAATCTACTCCACTGCAACTTCAGGA-AGATAAGATTTG
72204195 CCATATTCCA
Statistics
Matches: 140, Mismatches: 30, Indels: 9
0.78 0.17 0.05
Matches are distributed among these distances:
43 1 0.01
44 69 0.49
45 70 0.50
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.31
Consensus pattern (44 bp):
CTTCAATCTACTCCACTGCAACTTCAGGAAGATAAGATTTGTAT
Found at i:72204126 original size:89 final size:89
Alignment explanation
Indices: 72203975--72204177 Score: 268
Period size: 89 Copynumber: 2.3 Consensus size: 89
72203965 GAGAGATAAG
* * **
72203975 ACTTCAATCTACTCCACCGCAACTTCAGGAAGATAAGATTTGTAATTTTCGATCTACTCCACTGC
1 ACTTCAATCTACTCCACTGCAACTTCAGGAAGATAAAATTACTAATTTTCGATCTACTCCACTGC
72204040 AACTTCAGGGAGATAAGATCTA-TA
66 AACTTCAGGGAGATAAGAT-TAGTA
*
72204064 ACTTCAATCTGCTCCACTGCAACTTCAAGG-AGATAAAATTCACT-ATTTTCGATCTACTCCACT
1 ACTTCAATCTACTCCACTGCAACTTC-AGGAAGATAAAATT-ACTAATTTTCGATCTACTCCACT
* * *
72204127 GCAACTTTAGGGAGATGAGATTAGTG
64 GCAACTTCAGGGAGATAAGATTAGTA
* *
72204153 GCTTCAATCTACTCCACTTCAACTT
1 ACTTCAATCTACTCCACTGCAACTT
72204178 TAGAGAGATA
Statistics
Matches: 100, Mismatches: 11, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
88 2 0.02
89 94 0.94
90 4 0.04
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.31
Consensus pattern (89 bp):
ACTTCAATCTACTCCACTGCAACTTCAGGAAGATAAAATTACTAATTTTCGATCTACTCCACTGC
AACTTCAGGGAGATAAGATTAGTA
Found at i:72207710 original size:19 final size:19
Alignment explanation
Indices: 72207688--72207731 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
72207678 TTAAAAGTAT
*
72207688 TAAAATTAATATAAACTT-A
1 TAAAATT-ATATAAAATTCA
72207707 TAAAAATTATATAAAATTCA
1 T-AAAATTATATAAAATTCA
72207727 TAAAA
1 TAAAA
72207732 ATTTGAATTG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (19 bp):
TAAAATTATATAAAATTCA
Found at i:72207712 original size:20 final size:20
Alignment explanation
Indices: 72207668--72207734 Score: 68
Period size: 20 Copynumber: 3.5 Consensus size: 20
72207658 CATACAAATA
* *
72207668 ATAAAAGTTAT-TAAAAGT-
1 ATAAAAATTATATAAAATTC
* *
72207686 ATTAAAATTAATATAAACTT-
1 ATAAAAATT-ATATAAAATTC
72207706 ATAAAAATTATATAAAATTC
1 ATAAAAATTATATAAAATTC
72207726 ATAAAAATT
1 ATAAAAATT
72207735 TGAATTGGAC
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
18 7 0.17
19 11 0.28
20 22 0.55
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.36
Consensus pattern (20 bp):
ATAAAAATTATATAAAATTC
Found at i:72207724 original size:10 final size:10
Alignment explanation
Indices: 72207668--72207734 Score: 61
Period size: 10 Copynumber: 6.8 Consensus size: 10
72207658 CATACAAATA
72207668 ATAAAAGTTAT
1 ATAAAA-TTAT
*
72207679 -TAAAAGTAT
1 ATAAAATTAT
72207688 -TAAAATTAAT
1 ATAAAATT-AT
*
72207698 ATAAACTTAT
1 ATAAAATTAT
72207708 A-AAAATTAT
1 ATAAAATTAT
72207717 ATAAAATTCAT
1 ATAAAATT-AT
72207728 A-AAAATT
1 ATAAAATT
72207735 TGAATTGGAC
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
9 17 0.35
10 22 0.46
11 9 0.19
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.36
Consensus pattern (10 bp):
ATAAAATTAT
Found at i:72207860 original size:18 final size:18
Alignment explanation
Indices: 72207837--72207872 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
72207827 AACCAATATT
*
72207837 TTTTTAATGTTTTTTTTA
1 TTTTTAATGTTTTATTTA
72207855 TTTTTAATGTTTTATTTA
1 TTTTTAATGTTTTATTTA
72207873 ATTGAACTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.06, T:0.75
Consensus pattern (18 bp):
TTTTTAATGTTTTATTTA
Found at i:72208146 original size:9 final size:9
Alignment explanation
Indices: 72208132--72208332 Score: 101
Period size: 9 Copynumber: 21.7 Consensus size: 9
72208122 TTTTATGATG
72208132 TTTTTATAA
1 TTTTTATAA
72208141 TTTTTATAA
1 TTTTTATAA
*
72208150 GTTTATATCAA
1 -TTTTTAT-AA
*
72208161 TTTTAAT-A
1 TTTTTATAA
72208169 TTTTTATAA
1 TTTTTATAA
72208178 CTTTTTATAA
1 -TTTTTATAA
*
72208188 TTTTTATTA
1 TTTTTATAA
72208197 TTTTTA-AGA
1 TTTTTATA-A
* * *
72208206 ATTCTAAAA
1 TTTTTATAA
*
72208215 CTTTTTAAAA
1 -TTTTTATAA
*
72208225 ATTTTA-AA
1 TTTTTATAA
*
72208233 TATTTAAAATAA
1 T-TTT--TATAA
* *
72208245 GTTTAATTAA
1 TTTTTA-TAA
72208255 -TTTTATAA
1 TTTTTATAA
72208263 -TTTTATAA
1 TTTTTATAA
*
72208271 TATTTATAA
1 TTTTTATAA
*
72208280 GTTTTCATAA
1 -TTTTTATAA
*
72208290 TTTTT-TTA
1 TTTTTATAA
72208298 TATTTT-TAA
1 T-TTTTATAA
72208307 TTTTTATAAGA
1 TTTTTAT-A-A
*
72208318 TTTTTATGA
1 TTTTTATAA
72208327 TTTTTA
1 TTTTTA
72208333 ATCATTATTT
Statistics
Matches: 152, Mismatches: 22, Indels: 36
0.72 0.10 0.17
Matches are distributed among these distances:
8 27 0.18
9 70 0.46
10 39 0.26
11 14 0.09
12 2 0.01
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (9 bp):
TTTTTATAA
Found at i:72208164 original size:28 final size:28
Alignment explanation
Indices: 72208132--72208202 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 28
72208122 TTTTATGATG
*
72208132 TTTTTATAATTTTTATAAGTTTATATCAA
1 TTTTTATAATTTTTATAACTTTATAT-AA
* *
72208161 TTTTAAT-ATTTTTATAACTTTTTATAA
1 TTTTTATAATTTTTATAACTTTATATAA
*
72208188 TTTTTATTATTTTTA
1 TTTTTATAATTTTTA
72208203 AGAATTCTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
27 8 0.22
28 23 0.62
29 6 0.16
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (28 bp):
TTTTTATAATTTTTATAACTTTATATAA
Found at i:72208183 original size:19 final size:19
Alignment explanation
Indices: 72208161--72208222 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 19
72208151 TTTATATCAA
72208161 TTTTAATATTTTTATAACT
1 TTTTAATATTTTTATAACT
*
72208180 TTTT-ATAATTTTTATTA-T
1 TTTTAAT-ATTTTTATAACT
* * * *
72208198 TTTTAAGAATTCTAAAACT
1 TTTTAATATTTTTATAACT
72208217 TTTTAA
1 TTTTAA
72208223 AAATTTTAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
18 13 0.38
19 21 0.62
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.60
Consensus pattern (19 bp):
TTTTAATATTTTTATAACT
Found at i:72208202 original size:37 final size:37
Alignment explanation
Indices: 72208132--72208230 Score: 101
Period size: 37 Copynumber: 2.7 Consensus size: 37
72208122 TTTTATGATG
* *
72208132 TTTTTATAA-TTTTTATAAGTTTATATCAATTTTAATA
1 TTTTTATAACTTTTTATAA-TTTTTATCAATTTTAAGA
* *
72208169 TTTTTATAACTTTTTATAATTTTTATTATTTTTAAGA
1 TTTTTATAACTTTTTATAATTTTTATCAATTTTAAGA
* * * * *
72208206 ATTCTAAAACTTTTTAAAAATTTTA
1 TTTTTATAACTTTTTATAATTTTTA
72208231 AATATTTAAA
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
37 43 0.83
38 9 0.17
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.59
Consensus pattern (37 bp):
TTTTTATAACTTTTTATAATTTTTATCAATTTTAAGA
Found at i:72208331 original size:36 final size:38
Alignment explanation
Indices: 72208255--72208331 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 38
72208245 GTTTAATTAA
72208255 TTTTATAATTTTATAATATTTATAAGTTTTCATAATTT
1 TTTTATAATTTTATAATATTTATAAGTTTTCATAATTT
* * *
72208293 TTTTAT-ATTTT-TAATTTTTATAAGATTTTTATGATTT
1 TTTTATAATTTTATAATATTTATAAG-TTTTCATAATTT
72208330 TT
1 TT
72208332 AATCATTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
36 12 0.34
37 17 0.49
38 6 0.17
ACGTcount: A:0.30, C:0.01, G:0.04, T:0.65
Consensus pattern (38 bp):
TTTTATAATTTTATAATATTTATAAGTTTTCATAATTT
Found at i:72210063 original size:19 final size:19
Alignment explanation
Indices: 72210041--72210159 Score: 112
Period size: 19 Copynumber: 6.2 Consensus size: 19
72210031 CGTACAAAGC
*
72210041 GCATACTCGCACACGAAGT
1 GCATACTAGCACACGAAGT
* * *
72210060 GCATTCTAGCACACAAAGC
1 GCATACTAGCACACGAAGT
* *
72210079 ACATACTGGCACACGAAGT
1 GCATACTAGCACACGAAGT
* *
72210098 GCATTCTAGCGCACGAAGT
1 GCATACTAGCACACGAAGT
* * *
72210117 GCATTCTAGCGCACGATGT
1 GCATACTAGCACACGAAGT
* *
72210136 ACATATCTGGCACACGAAGT
1 GCATA-CTAGCACACGAAGT
72210156 GCAT
1 GCAT
72210160 CCTGACGCAT
Statistics
Matches: 79, Mismatches: 20, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
19 65 0.82
20 14 0.18
ACGTcount: A:0.31, C:0.28, G:0.22, T:0.19
Consensus pattern (19 bp):
GCATACTAGCACACGAAGT
Found at i:72210132 original size:38 final size:38
Alignment explanation
Indices: 72210041--72210159 Score: 130
Period size: 38 Copynumber: 3.1 Consensus size: 38
72210031 CGTACAAAGC
* * *
72210041 GCATACTCGCACACGAAGTGCATTCTAGCACACAAAGC
1 GCATACTAGCACACGAAGTGCATTCTAGCACACGAAGT
* * *
72210079 ACATACTGGCACACGAAGTGCATTCTAGCGCACGAAGT
1 GCATACTAGCACACGAAGTGCATTCTAGCACACGAAGT
* * * * *
72210117 GCATTCTAGCGCACGATGTACATATCTGGCACACGAAGT
1 GCATACTAGCACACGAAGTGCAT-TCTAGCACACGAAGT
72210156 GCAT
1 GCAT
72210160 CCTGACGCAT
Statistics
Matches: 67, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
38 50 0.75
39 17 0.25
ACGTcount: A:0.31, C:0.28, G:0.22, T:0.19
Consensus pattern (38 bp):
GCATACTAGCACACGAAGTGCATTCTAGCACACGAAGT
Found at i:72211633 original size:14 final size:14
Alignment explanation
Indices: 72211614--72211643 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
72211604 GTCATTTAGG
72211614 CCAACCAAACTGGC
1 CCAACCAAACTGGC
72211628 CCAACCAAACTGGC
1 CCAACCAAACTGGC
72211642 CC
1 CC
72211644 GGTGACTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.47, G:0.13, T:0.07
Consensus pattern (14 bp):
CCAACCAAACTGGC
Found at i:72214812 original size:14 final size:14
Alignment explanation
Indices: 72214793--72214822 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
72214783 GTCATTTAGG
72214793 CCAACCAAACTGGC
1 CCAACCAAACTGGC
72214807 CCAACCAAACTGGC
1 CCAACCAAACTGGC
72214821 CC
1 CC
72214823 GGTGATTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.47, G:0.13, T:0.07
Consensus pattern (14 bp):
CCAACCAAACTGGC
Found at i:72216540 original size:27 final size:27
Alignment explanation
Indices: 72216502--72216559 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
72216492 ATAATATGAA
72216502 ATATAAATTTACAGAAAAGTAACATGC
1 ATATAAATTTACAGAAAAGTAACATGC
72216529 ATATAAATTTACAGAAAAGTAACATGC
1 ATATAAATTTACAGAAAAGTAACATGC
72216556 ATAT
1 ATAT
72216560 CATGAAATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.52, C:0.10, G:0.10, T:0.28
Consensus pattern (27 bp):
ATATAAATTTACAGAAAAGTAACATGC
Found at i:72221210 original size:21 final size:20
Alignment explanation
Indices: 72221186--72221298 Score: 111
Period size: 20 Copynumber: 5.5 Consensus size: 20
72221176 ATTTGTCTTA
*
72221186 AATCGATTCTTTGCTTATTTG
1 AATCGATTCTTTG-TTGTTTG
* *
72221207 AATCGATTGTTTTGTTGATTG
1 AATCGATT-CTTTGTTGTTTG
* *
72221228 ACTCAATTCTTTTTGTTGTTTG
1 AATCGATTC--TTTGTTGTTTG
* *
72221250 AATCGATTGTTTATTGTTTG
1 AATCGATTCTTTGTTGTTTG
72221270 AATCGATTCTTTGTTGTTT-
1 AATCGATTCTTTGTTGTTTG
72221289 AACTCGATTC
1 AA-TCGATTC
72221299 AAACGCCAAC
Statistics
Matches: 75, Mismatches: 13, Indels: 9
0.77 0.13 0.09
Matches are distributed among these distances:
19 2 0.03
20 34 0.45
21 19 0.25
22 20 0.27
ACGTcount: A:0.19, C:0.12, G:0.17, T:0.53
Consensus pattern (20 bp):
AATCGATTCTTTGTTGTTTG
Found at i:72221279 original size:42 final size:43
Alignment explanation
Indices: 72221186--72221287 Score: 120
Period size: 42 Copynumber: 2.4 Consensus size: 43
72221176 ATTTGTCTTA
*
72221186 AATCGATTC--TTTGCTTATTTGAATCGATTGTTTTGTTGATTG
1 AATCGATTCTTTTTG-TTATTTGAATCGATTGTTTTATTGATTG
* * * *
72221228 ACTCAATTCTTTTTGTTGTTTGAATCGATTG-TTTATTGTTTG
1 AATCGATTCTTTTTGTTATTTGAATCGATTGTTTTATTGATTG
72221270 AATCGATTCTTTGTTGTT
1 AATCGATTCTTT-TTGTT
72221288 TAACTCGATT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
42 26 0.52
43 20 0.40
44 4 0.08
ACGTcount: A:0.18, C:0.10, G:0.18, T:0.55
Consensus pattern (43 bp):
AATCGATTCTTTTTGTTATTTGAATCGATTGTTTTATTGATTG
Found at i:72224784 original size:48 final size:47
Alignment explanation
Indices: 72224632--72224797 Score: 149
Period size: 48 Copynumber: 3.4 Consensus size: 47
72224622 ACTTAATCAC
* * * * *
72224632 TTTAATATTAAATTAATATAATATTTATCAAGATACATATTAGATTAAA
1 TTTAATATTAAATTAATAAAATA-CTATTAAGATA-TTATTAAATTAAA
* * * *
72224681 TTTAATA-TAATCTTATTAAAATAGTATTAAGATATTA--AACTTAATCA
1 TTTAATATTAA-ATTAATAAAATACTATTAAGATATTATTAAATTAA--A
*
72224728 CTTCAATATTAAATTAATAAAATACTATTAAGATATGTATTAAATTAAA
1 -TTTAATATTAAATTAATAAAATACTATTAAGATAT-TATTAAATTAAA
*
72224777 TTTAATATTAAATTATTAAAA
1 TTTAATATTAAATTAATAAAA
72224798 AATATTATTT
Statistics
Matches: 94, Mismatches: 15, Indels: 17
0.75 0.12 0.13
Matches are distributed among these distances:
45 5 0.05
47 3 0.03
48 58 0.62
49 22 0.23
51 6 0.06
ACGTcount: A:0.49, C:0.05, G:0.04, T:0.42
Consensus pattern (47 bp):
TTTAATATTAAATTAATAAAATACTATTAAGATATTATTAAATTAAA
Found at i:72224797 original size:96 final size:97
Alignment explanation
Indices: 72224617--72224797 Score: 267
Period size: 97 Copynumber: 1.9 Consensus size: 97
72224607 TTCAACTATG
* * * *
72224617 ATTAAACTTAATCACTTTAATATTAAATTAATATAATATTTATCAAGATACATATTAGATTAAAT
1 ATTAAACTTAATCACTTCAATATTAAATTAATAAAATATCTATCAAGATACATATTAAATTAAAT
*
72224682 TTAATATAATCTTATTAAAATAGTATTAAGAT
66 TTAATATAATATTATTAAAATAGTATTAAGAT
* **
72224714 ATTAAACTTAATCACTTCAATATTAAATTAATAAAATA-CTATTAAGATATGTATTAAATTAAAT
1 ATTAAACTTAATCACTTCAATATTAAATTAATAAAATATCTATCAAGATACATATTAAATTAAAT
72224778 TTAATATTAA-ATTATTAAAA
66 TTAATA-TAATATTATTAAAA
72224798 AATATTATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
96 36 0.48
97 39 0.52
ACGTcount: A:0.49, C:0.06, G:0.03, T:0.41
Consensus pattern (97 bp):
ATTAAACTTAATCACTTCAATATTAAATTAATAAAATATCTATCAAGATACATATTAAATTAAAT
TTAATATAATATTATTAAAATAGTATTAAGAT
Found at i:72227192 original size:22 final size:21
Alignment explanation
Indices: 72227153--72227198 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
72227143 AGGGCGGTGG
*
72227153 CAATGGTGGTGCAAGGTGGTAA
1 CAATGGTGATGCAAGGTGG-AA
* *
72227175 CAATGGTGATGTATGGTGGAA
1 CAATGGTGATGCAAGGTGGAA
72227196 CAA
1 CAA
72227199 AATGGGCAGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.30, C:0.09, G:0.37, T:0.24
Consensus pattern (21 bp):
CAATGGTGATGCAAGGTGGAA
Found at i:72230397 original size:5 final size:5
Alignment explanation
Indices: 72230387--72230424 Score: 69
Period size: 5 Copynumber: 7.8 Consensus size: 5
72230377 TTTGTGTGTT
72230387 TTTTA TTTTA TTTTA TTTTA -TTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
72230425 CACAAATTGG
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.12
5 28 0.88
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:72230412 original size:14 final size:14
Alignment explanation
Indices: 72230387--72230423 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
72230377 TTTGTGTGTT
72230387 TTTTATTTTATTTTA
1 TTTTA-TTTATTTTA
72230402 TTTTATTTATTTTA
1 TTTTATTTATTTTA
72230416 TTTTATTT
1 TTTTATTT
72230424 TCACAAATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 17 0.77
15 5 0.23
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTTATTTATTTTA
Found at i:72230412 original size:19 final size:19
Alignment explanation
Indices: 72230388--72230424 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
72230378 TTGTGTGTTT
72230388 TTTATTTTATTTTATTTTA
1 TTTATTTTATTTTATTTTA
72230407 TTTATTTTATTTTATTTT
1 TTTATTTTATTTTATTTT
72230425 CACAAATTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (19 bp):
TTTATTTTATTTTATTTTA
Found at i:72234861 original size:4 final size:5
Alignment explanation
Indices: 72234847--72234886 Score: 59
Period size: 5 Copynumber: 8.6 Consensus size: 5
72234837 TTGTGTGTTC
72234847 TTTAT TTTA- TTTA- TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
72234887 TCACAAACTC
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 12 0.35
5 22 0.65
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:72240888 original size:29 final size:29
Alignment explanation
Indices: 72240795--72240937 Score: 135
Period size: 29 Copynumber: 4.9 Consensus size: 29
72240785 TAAAATCACA
* * *
72240795 ATGGTTGTTACCATCCCTTTCCATAGTTAG
1 ATGGTCGTCACCATCCCTTTTCATAGTT-G
* * * * *
72240825 ATAGTCG-AAGCTATCCCTTTCCATATTTTG
1 ATGGTCGTCA-CCATCCCTTTTCATA-GTTG
* *
72240855 ATGGTCGTCACCGTCCTTTTTCATAGTTG
1 ATGGTCGTCACCATCCCTTTTCATAGTTG
* *
72240884 TTGGTCGTCACCATCCCTTTTCATTGTTG
1 ATGGTCGTCACCATCCCTTTTCATAGTTG
*
72240913 ATGGTCATCACCATCCCTTTTCATA
1 ATGGTCGTCACCATCCCTTTTCATA
72240938 ATTTGATAGC
Statistics
Matches: 91, Mismatches: 19, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
29 51 0.56
30 37 0.41
31 3 0.03
ACGTcount: A:0.18, C:0.26, G:0.15, T:0.41
Consensus pattern (29 bp):
ATGGTCGTCACCATCCCTTTTCATAGTTG
Found at i:72240959 original size:30 final size:30
Alignment explanation
Indices: 72240925--72240992 Score: 91
Period size: 30 Copynumber: 2.3 Consensus size: 30
72240915 GGTCATCACC
** *
72240925 ATCCCTTTTCATAATTTGATAGCTAAAGCT
1 ATCCCTTTTCATAATTCAATAGCCAAAGCT
* *
72240955 ATCCCTTTTCATAGTTCAATAGCCGAAGCT
1 ATCCCTTTTCATAATTCAATAGCCAAAGCT
72240985 ATCCCTTT
1 ATCCCTTT
72240993 CATTAGTCAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.26, C:0.25, G:0.10, T:0.38
Consensus pattern (30 bp):
ATCCCTTTTCATAATTCAATAGCCAAAGCT
Found at i:72243676 original size:14 final size:14
Alignment explanation
Indices: 72243657--72243686 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
72243647 GTAGGGAAGG
72243657 TTACAATCCAAATC
1 TTACAATCCAAATC
72243671 TTACAATCCAAATC
1 TTACAATCCAAATC
72243685 TT
1 TT
72243687 CCACAATGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.40, C:0.27, G:0.00, T:0.33
Consensus pattern (14 bp):
TTACAATCCAAATC
Found at i:72248264 original size:15 final size:15
Alignment explanation
Indices: 72248244--72248275 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
72248234 TTGAGGCAAG
72248244 CCACCATATAACATC
1 CCACCATATAACATC
72248259 CCACCATATAACATC
1 CCACCATATAACATC
72248274 CC
1 CC
72248276 TCTCAATTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.44, G:0.00, T:0.19
Consensus pattern (15 bp):
CCACCATATAACATC
Found at i:72251383 original size:24 final size:25
Alignment explanation
Indices: 72251356--72251404 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
72251346 TATTTTTATG
72251356 AAATTACATATTAATA-TAATAATA
1 AAATTACATATTAATACTAATAATA
* *
72251380 AAATTATATTTTAATACCTAATAAT
1 AAATTACATATTAATA-CTAATAAT
72251405 TTAAAATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 14 0.67
26 7 0.33
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (25 bp):
AAATTACATATTAATACTAATAATA
Found at i:72253979 original size:22 final size:21
Alignment explanation
Indices: 72253954--72253998 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
72253944 ATTAAACTTC
72253954 AAAATAAAAAAAATATTTAAAA
1 AAAATAAAAAAAATA-TTAAAA
** *
72253976 AAAATATTAATAATATTAAAA
1 AAAATAAAAAAAATATTAAAA
72253997 AA
1 AA
72253999 GTATTTAAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (21 bp):
AAAATAAAAAAAATATTAAAA
Found at i:72253985 original size:12 final size:13
Alignment explanation
Indices: 72253958--72253983 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72253948 AACTTCAAAA
72253958 TAAAAAAAATATT
1 TAAAAAAAATATT
72253971 TAAAAAAAATATT
1 TAAAAAAAATATT
72253984 AATAATATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAAAAAAATATT
Found at i:72257262 original size:28 final size:28
Alignment explanation
Indices: 72257230--72257291 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
72257220 AAATTGAAGG
*
72257230 TTTAAAGATCTCT-TTTATTGTTTAACAA
1 TTTAAAAATCT-TATTTATTGTTTAACAA
* * *
72257258 TTTAAAAATGTTATTTATTGTTTAATAG
1 TTTAAAAATCTTATTTATTGTTTAACAA
72257286 TTTAAA
1 TTTAAA
72257292 TTTGGCATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 1 0.03
28 28 0.97
ACGTcount: A:0.35, C:0.05, G:0.08, T:0.52
Consensus pattern (28 bp):
TTTAAAAATCTTATTTATTGTTTAACAA
Found at i:72257301 original size:28 final size:28
Alignment explanation
Indices: 72257243--72257302 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
72257233 AAAGATCTCT
**
72257243 TTTATTGTTTAACAATTTAAAAATGTTA
1 TTTATTGTTTAACAATTTAAAAATGGCA
* * **
72257271 TTTATTGTTTAATAGTTTAAATTTGGCA
1 TTTATTGTTTAACAATTTAAAAATGGCA
72257299 TTTA
1 TTTA
72257303 CTATTTAAAC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.33, C:0.03, G:0.10, T:0.53
Consensus pattern (28 bp):
TTTATTGTTTAACAATTTAAAAATGGCA
Found at i:72258134 original size:16 final size:15
Alignment explanation
Indices: 72258113--72258145 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
72258103 TCATCTTAAC
72258113 AACTAACTAACTGTCT
1 AACTAACTAACTG-CT
72258129 AACTAACTAACTGCT
1 AACTAACTAACTGCT
72258144 AA
1 AA
72258146 TTTCTTAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.42, C:0.24, G:0.06, T:0.27
Consensus pattern (15 bp):
AACTAACTAACTGCT
Found at i:72262630 original size:28 final size:28
Alignment explanation
Indices: 72262590--72262645 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
72262580 ATGGGTGAAA
72262590 ACCATATTTCTTACTTACTTCATTAACG
1 ACCATATTTCTTACTTACTTCATTAACG
72262618 ACCATATTTCTTACTTACTTCATTAACG
1 ACCATATTTCTTACTTACTTCATTAACG
72262646 CAAGCAAACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.25, G:0.04, T:0.43
Consensus pattern (28 bp):
ACCATATTTCTTACTTACTTCATTAACG
Found at i:72265885 original size:25 final size:25
Alignment explanation
Indices: 72265840--72265888 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
72265830 AATCAAACTA
* *
72265840 AGACTTAATTAGTATATATAATTTG
1 AGACTTAATTAGCATAAATAATTTG
72265865 AGACTTAATTTA-CATAAATAATTT
1 AGACTTAA-TTAGCATAAATAATTT
72265889 CTTCTAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 18 0.86
26 3 0.14
ACGTcount: A:0.43, C:0.06, G:0.08, T:0.43
Consensus pattern (25 bp):
AGACTTAATTAGCATAAATAATTTG
Found at i:72266428 original size:20 final size:20
Alignment explanation
Indices: 72266383--72266432 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
72266373 TGGGTAGAAA
*
72266383 TATTGATACATCTTTAAAAT
1 TATTGATAAATCTTTAAAAT
*
72266403 TATTGATAAATCTTTAGATAT
1 TATTGATAAATCTTTA-AAAT
72266424 T-TTGATAAA
1 TATTGATAAA
72266433 AACATTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 23 0.85
21 4 0.15
ACGTcount: A:0.40, C:0.06, G:0.08, T:0.46
Consensus pattern (20 bp):
TATTGATAAATCTTTAAAAT
Found at i:72280129 original size:43 final size:43
Alignment explanation
Indices: 72280078--72280201 Score: 140
Period size: 44 Copynumber: 2.9 Consensus size: 43
72280068 TAGGATTCCG
*
72280078 ATATGTGATTTCGTGTAAGACCATGTTTGGGACGTTGACATCA
1 ATATGTGATTTCGTGTAAGACCATGTCTGGGACGTTGACATCA
* * * ** * *
72280121 ATTTGTGATTTATGTGTAAGACCCTGTCTGGGACAATGGCATCG
1 ATATGTGATTT-CGTGTAAGACCATGTCTGGGACGTTGACATCA
* * *
72280165 ATATGTGATTACATGTAAGACCACGTCTGGGACGTTG
1 ATATGTGATTTCGTGTAAGACCATGTCTGGGACGTTG
72280202 GCGTTGTACG
Statistics
Matches: 64, Mismatches: 16, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
43 30 0.47
44 34 0.53
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (43 bp):
ATATGTGATTTCGTGTAAGACCATGTCTGGGACGTTGACATCA
Found at i:72280153 original size:44 final size:44
Alignment explanation
Indices: 72280078--72280201 Score: 137
Period size: 43 Copynumber: 2.9 Consensus size: 44
72280068 TAGGATTCCG
* *
72280078 ATATGTGATTT-CGTGTAAGACCATGTTTGGGACGTTGACATCA
1 ATATGTGATTTACGTGTAAGACCCTGTCTGGGACGTTGACATCA
* * ** * *
72280121 ATTTGTGATTTATGTGTAAGACCCTGTCTGGGACAATGGCATCG
1 ATATGTGATTTACGTGTAAGACCCTGTCTGGGACGTTGACATCA
*
72280165 ATATGTGA-TTACATGTAAGACCAC-GTCTGGGACGTTG
1 ATATGTGATTTACGTGTAAGACC-CTGTCTGGGACGTTG
72280202 GCGTTGTACG
Statistics
Matches: 66, Mismatches: 13, Indels: 4
0.80 0.16 0.05
Matches are distributed among these distances:
43 33 0.50
44 33 0.50
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (44 bp):
ATATGTGATTTACGTGTAAGACCCTGTCTGGGACGTTGACATCA
Found at i:72280829 original size:13 final size:14
Alignment explanation
Indices: 72280811--72280839 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
72280801 CTGTATGTTC
72280811 TTTA-TTTTATTTT
1 TTTATTTTTATTTT
72280824 TTTATTTTTATTTT
1 TTTATTTTTATTTT
72280838 TT
1 TT
72280840 CCACAAATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.27
14 11 0.73
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (14 bp):
TTTATTTTTATTTT
Found at i:72286485 original size:27 final size:27
Alignment explanation
Indices: 72286455--72286632 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
72286445 ATATTGAGCC
* *
72286455 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
72286482 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
72286509 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
72286537 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
72286564 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
72286591 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
72286618 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
72286633 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:72286567 original size:55 final size:54
Alignment explanation
Indices: 72286455--72286632 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
72286445 ATATTGAGCC
* * * * *
72286455 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
72286509 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
72286564 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
72286618 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
72286633 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:72294258 original size:27 final size:27
Alignment explanation
Indices: 72294228--72294405 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
72294218 ATATTGAGTC
* * * *
72294228 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
72294255 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
72294282 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
72294310 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
72294337 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
72294364 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
72294391 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
72294406 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:72294367 original size:82 final size:81
Alignment explanation
Indices: 72294249--72294404 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
72294239 TGCTATATAA
* *
72294249 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
72294314 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
72294331 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
72294395 CACTTAGTGC
65 CACTTAGTGC
72294405 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:72296284 original size:13 final size:13
Alignment explanation
Indices: 72296266--72296290 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72296256 TATATGTTCT
72296266 TTATTTTATTTTA
1 TTATTTTATTTTA
72296279 TTATTTTATTTT
1 TTATTTTATTTT
72296291 TTCACAGGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (13 bp):
TTATTTTATTTTA
Found at i:72298131 original size:54 final size:54
Alignment explanation
Indices: 72297959--72298142 Score: 228
Period size: 55 Copynumber: 3.4 Consensus size: 54
72297949 TTACCATTGC
* * * *
72297959 CATGGTCTTACGTGGTACCCTTGCCTTAT-GAACTCACCAATGCCATGCCTTGG
1 CATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGCCATGCCTTGG
** ** * *
72298012 CATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTCATCAATATCATGTCTTGA
1 CATGGTCTTACATGATATCC-TTGCCTTATAG-AACTCATCAATGCCATGCCTTGG
* *
72298067 CATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGG
1 CATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGCCATGCCTTGG
72298121 CATGGTCTTACATGATATCCTT
1 CATGGTCTTACATGATATCCTT
72298143 ATCTTACCAA
Statistics
Matches: 111, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
52 2 0.02
53 24 0.22
54 40 0.36
55 43 0.39
56 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (54 bp):
CATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGCCATGCCTTGG
Found at i:72300710 original size:15 final size:15
Alignment explanation
Indices: 72300690--72300719 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
72300680 ATGTTTAGAG
72300690 TTAAATGATATTTAT
1 TTAAATGATATTTAT
*
72300705 TTAAATGATGTTTAT
1 TTAAATGATATTTAT
72300720 GAAAATGTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (15 bp):
TTAAATGATATTTAT
Found at i:72302783 original size:132 final size:132
Alignment explanation
Indices: 72302347--72302868 Score: 428
Period size: 132 Copynumber: 4.0 Consensus size: 132
72302337 TAGAAAATAC
* * * * * * *** *
72302347 GAGTGAAATTCCGAAGAGATATTCGATTGTTTTGAACAAATGAGAGATTGCAACTCAGTGCGATA
1 GAGTGAAATT-TGAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACACGTTA
* * ** * * *
72302412 GGGCACGATT-CTTGAATTGCCAAACATCGAAC-ATAGCCTTTGTTTTAAAGGGTTTTCTTAAAA
65 GGGTATGATTCCGCGAATTGCCAAACATCGAACTATTGCCTTCGTTTTAAA-GGATTT-TTAAAA
72302475 GACAT
128 GACAT
** * * * * ** * *
72302480 GAGTGAAAACCTAAAAGAATATTCGATTGTTTTGAACAAACGAGAAATCACAACCTAACACGATA
1 GAGTG-AAATTTGAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACACGTTA
* * * * * * *
72302545 GGGTATGATTCC-TGAATTGTCAAACACCG-AGTATTACCTTCGTTTTAGAGGATTTTTAGAAGA
65 GGGTATGATTCCGCGAATTGCCAAACATCGAACTATTGCCTTCGTTTTAAAGGATTTTTAAAAGA
*
72302608 CCT
130 CAT
* * * *
72302611 GAATGGAATCTAGAAGGGATATTTGATTATTTTGAACAAACGAGAAATTGCAACCCAACACGTTA
1 GAGTGAAAT-TTGAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACACGTTA
* * * *
72302676 GGGTATGATTCCGCGAATTGCCAAATATCAAACT-TTGCCTTCGTTTTAAAGAATTTTTAAAAGG
65 GGGTATGATTCCGCGAATTGCCAAACATCGAACTATTGCCTTCGTTTTAAAGGATTTTTAAAAGA
72302740 CAT
130 CAT
* * * * *
72302743 GAGTGAAAGTTTGAAGGGATATTCGATTATTTCGAGCAAACGCGAAATTGCAACCCAACACATTT
1 GAGTGAAA-TTTGAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACACGTTA
* * * * * * * *
72302808 GGGCACT-ATTTCGCGAATTGCCAAATATCGAA-TCTCGTCATCGTTTTAAAGTATTTTTAAA
65 GGGTA-TGATTCCGCGAATTGCCAAACATCGAACTATTGCCTTCGTTTTAAAGGATTTTTAAA
72302869 TGTATAATCA
Statistics
Matches: 310, Mismatches: 70, Indels: 19
0.78 0.18 0.05
Matches are distributed among these distances:
130 2 0.01
131 70 0.23
132 149 0.48
133 85 0.27
134 4 0.01
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (132 bp):
GAGTGAAATTTGAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACACGTTAG
GGTATGATTCCGCGAATTGCCAAACATCGAACTATTGCCTTCGTTTTAAAGGATTTTTAAAAGAC
AT
Found at i:72308465 original size:45 final size:45
Alignment explanation
Indices: 72308400--72308531 Score: 164
Period size: 45 Copynumber: 3.0 Consensus size: 45
72308390 ATTATCGTAC
*
72308400 GACACTATTCGGGCCCTTGAGCCTAGCAGGCTATAATGCTGGTGA
1 GACACTATTCGGGCCCTTGAGCCTAGCAGGCTATAATGCCGGTGA
* *
72308445 GACACTATTTGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
1 GACACTATTCGGGCCCTTGAGCCTAGCAGGCTATAATGCCGGTGA
** * *
72308490 -A-AGGATATCGGG-CCTCGAGCCTAGCAGGCGA-AATGCCGGTGA
1 GACACTAT-TCGGGCCCTTGAGCCTAGCAGGCTATAATGCCGGTGA
72308532 ATGGATTCGG
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
42 11 0.14
43 19 0.25
44 5 0.06
45 42 0.55
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.22
Consensus pattern (45 bp):
GACACTATTCGGGCCCTTGAGCCTAGCAGGCTATAATGCCGGTGA
Found at i:72314333 original size:15 final size:16
Alignment explanation
Indices: 72314313--72314342 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
72314303 CGGTGCCTTG
72314313 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
72314328 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
72314343 AGCATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:72325050 original size:19 final size:19
Alignment explanation
Indices: 72325026--72325066 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
72325016 CTTTTCAATA
*
72325026 AAAGGATTTATAATGAATC
1 AAAGGATTTAGAATGAATC
72325045 AAAGGATTTAGAATGAATC
1 AAAGGATTTAGAATGAATC
72325064 AAA
1 AAA
72325067 TGTAATTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.51, C:0.05, G:0.17, T:0.27
Consensus pattern (19 bp):
AAAGGATTTAGAATGAATC
Found at i:72327174 original size:13 final size:13
Alignment explanation
Indices: 72327156--72327185 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
72327146 CAGTATCTAC
72327156 TTTAGGTTACTCA
1 TTTAGGTTACTCA
72327169 TTTAGGTTACTCA
1 TTTAGGTTACTCA
72327182 TTTA
1 TTTA
72327186 TATAATACCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.13, G:0.13, T:0.50
Consensus pattern (13 bp):
TTTAGGTTACTCA
Found at i:72327647 original size:16 final size:16
Alignment explanation
Indices: 72327579--72327651 Score: 53
Period size: 16 Copynumber: 4.3 Consensus size: 16
72327569 AAATCAAATA
72327579 ATATTTAAATAATTTAAT
1 ATATTT-AATAA-TTAAT
72327597 ATAATTATACATAA--AAT
1 AT-ATT-TA-ATAATTAAT
*
72327614 ATATTTTAAT-TTTAAAT
1 ATA-TTTAATAATT-AAT
72327631 ATATTTAATAATTAAT
1 ATATTTAATAATTAAT
72327647 ATATT
1 ATATT
72327652 ATTTATAAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 18
0.69 0.03 0.28
Matches are distributed among these distances:
15 2 0.04
16 17 0.38
17 15 0.33
18 2 0.04
19 4 0.09
20 5 0.11
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (16 bp):
ATATTTAATAATTAAT
Found at i:72327727 original size:28 final size:25
Alignment explanation
Indices: 72327622--72327728 Score: 63
Period size: 28 Copynumber: 3.8 Consensus size: 25
72327612 ATATATTTTA
*
72327622 ATTTTAAATATATTTAATA-ATTAATAT
1 ATTTTAAA-A-ATTTAATATAATAA-AT
*
72327649 ATTATTTATAAATTTAATTATACATGAAAT
1 A-T-TTTAAAAATTTAA-TATA-AT-AAAT
* *
72327679 ATTTTAAAATTTTAAAAATAATAAAT
1 ATTTTAAAAATTT-AATATAATAAAT
72327705 AGTGTTTAAATAATTTAATATAAT
1 A-T-TTTAAA-AATTTAATATAAT
72327729 GCTTAAAATT
Statistics
Matches: 63, Mismatches: 7, Indels: 19
0.71 0.08 0.21
Matches are distributed among these distances:
26 5 0.08
27 10 0.16
28 29 0.46
29 13 0.21
30 4 0.06
31 2 0.03
ACGTcount: A:0.50, C:0.01, G:0.03, T:0.47
Consensus pattern (25 bp):
ATTTTAAAAATTTAATATAATAAAT
Found at i:72329786 original size:26 final size:26
Alignment explanation
Indices: 72329757--72329819 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 26
72329747 TTTATCGAGG
* *
72329757 TTATTAGTTTAT-GATAAATGAATTTT
1 TTATTAATTTATCGATAAATGAA-TAT
*
72329783 TTATTAATTTATCGATAAATTAATAT
1 TTATTAATTTATCGATAAATGAATAT
72329809 TTATTAATTTA
1 TTATTAATTTA
72329820 GAGAATATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
26 24 0.73
27 9 0.27
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.54
Consensus pattern (26 bp):
TTATTAATTTATCGATAAATGAATAT
Found at i:72344465 original size:93 final size:93
Alignment explanation
Indices: 72344353--72344524 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
72344343 CGCCCATAAG
*
72344353 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
72344417 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
72344446 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
72344511 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
72344525 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:72344519 original size:46 final size:46
Alignment explanation
Indices: 72344346--72344521 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
72344336 TGTAACCCGC
* *
72344346 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
72344392 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
72344442 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
72344485 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
72344522 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:72351988 original size:46 final size:46
Alignment explanation
Indices: 72351921--72352095 Score: 314
Period size: 46 Copynumber: 3.8 Consensus size: 46
72351911 TGTAACCCGC
* * * *
72351921 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
72351967 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
72352013 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
72352059 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
72352096 TGCTCAACCA
Statistics
Matches: 125, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 125 1.00
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:72355906 original size:22 final size:22
Alignment explanation
Indices: 72355878--72355922 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
72355868 GGTTCCCACG
*
72355878 TAGCCTCTTCGACTCCATGTCT
1 TAGCCTCTTCAACTCCATGTCT
72355900 TAGCCTCTTCAACTCCATGTCT
1 TAGCCTCTTCAACTCCATGTCT
72355922 T
1 T
72355923 TGCCATAACA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.16, C:0.36, G:0.11, T:0.38
Consensus pattern (22 bp):
TAGCCTCTTCAACTCCATGTCT
Found at i:72363560 original size:27 final size:27
Alignment explanation
Indices: 72363529--72363580 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
72363519 CTGAGTTGAC
*
72363529 CTAT-ATAAATATATTTCAATAAAACCA
1 CTATAATAAA-ATATTGCAATAAAACCA
*
72363556 CTATAATAAAATATTGCAATTAAAC
1 CTATAATAAAATATTGCAATAAAAC
72363581 TATCGAATCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 17 0.77
28 5 0.23
ACGTcount: A:0.52, C:0.13, G:0.02, T:0.33
Consensus pattern (27 bp):
CTATAATAAAATATTGCAATAAAACCA
Found at i:72365740 original size:42 final size:42
Alignment explanation
Indices: 72365685--72365803 Score: 116
Period size: 43 Copynumber: 2.8 Consensus size: 42
72365675 TTAGAGTTAC
*
72365685 TGAGATTTACGTGTAAGACCATATCTGAGATATGACATCGATA
1 TGAGA-TTACGTGTAAGACCATACCTGAGATATGACATCGATA
* * * *
72365728 TGAGACTT-CGTGTAAGACTATAGCT-AGGCTATTGGCATCGATA
1 TGAGA-TTACGTGTAAGACCATACCTGA-GATA-TGACATCGATA
* * *
72365771 CGAGATTACATGTAAGACCATACCTGGGATATG
1 TGAGATTACGTGTAAGACCATACCTGAGATATG
72365804 GCACTGGTAT
Statistics
Matches: 61, Mismatches: 11, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
41 1 0.02
42 22 0.36
43 38 0.62
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.29
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATACCTGAGATATGACATCGATA
Found at i:72368086 original size:28 final size:27
Alignment explanation
Indices: 72368044--72368104 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 27
72368034 CACTGTATTG
* * *
72368044 GTACTATATTGGGCTTAGGCCCACACT
1 GTACTGTATAGGGCTAAGGCCCACACT
*
72368071 GTTACTGTATAGGGCTAAGGCCCAGACT
1 G-TACTGTATAGGGCTAAGGCCCACACT
72368099 GTACTG
1 GTACTG
72368105 ATAATGTATA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 6 0.21
28 23 0.79
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (27 bp):
GTACTGTATAGGGCTAAGGCCCACACT
Found at i:72368861 original size:20 final size:20
Alignment explanation
Indices: 72368823--72368862 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
72368813 TTGCGAAAGC
*
72368823 CTTGTGATTATTGATATATA
1 CTTGTGATTATTGAAATATA
72368843 CTTGTGATGTA-TGAAATATA
1 CTTGTGAT-TATTGAAATATA
72368863 TGGTAAATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.33, C:0.05, G:0.17, T:0.45
Consensus pattern (20 bp):
CTTGTGATTATTGAAATATA
Found at i:72372918 original size:16 final size:15
Alignment explanation
Indices: 72372886--72372933 Score: 51
Period size: 16 Copynumber: 3.1 Consensus size: 15
72372876 TAAATGATGA
* *
72372886 TATTTTCATCTTTTT
1 TATTTTTATCATTTT
72372901 TATTATTTATCATTTT
1 TATT-TTTATCATTTT
*
72372917 TATTTTTTTCATCTTT
1 TATTTTTATCAT-TTT
72372933 T
1 T
72372934 CAATTTTGTC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 11 0.39
16 17 0.61
ACGTcount: A:0.17, C:0.10, G:0.00, T:0.73
Consensus pattern (15 bp):
TATTTTTATCATTTT
Found at i:72373890 original size:12 final size:12
Alignment explanation
Indices: 72373873--72373899 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
72373863 TCACATGCCT
72373873 GTGTGCTAGGCC
1 GTGTGCTAGGCC
72373885 GTGTGCTAGGCC
1 GTGTGCTAGGCC
72373897 GTG
1 GTG
72373900 CCAAAAATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.22, G:0.44, T:0.26
Consensus pattern (12 bp):
GTGTGCTAGGCC
Found at i:72381976 original size:29 final size:29
Alignment explanation
Indices: 72381928--72382042 Score: 101
Period size: 29 Copynumber: 4.0 Consensus size: 29
72381918 TACCTGTATC
* *
72381928 TGGCCCATTAAG-CCTAATCATATTCATA
1 TGGCCCATTAGGCCCAAATCATATTCATA
* * *
72381956 TGACCCAATAGGCCCAAATCATCTAT-ATA
1 TGGCCCATTAGGCCCAAATCATAT-TCATA
* * *
72381985 TGGTCCATTAGGCCCAAATCAAATTTATA
1 TGGCCCATTAGGCCCAAATCATATTCATA
* * *
72382014 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCATATTCATA
72382042 T
1 T
72382043 TCATCCTCAC
Statistics
Matches: 69, Mismatches: 15, Indels: 6
0.77 0.17 0.07
Matches are distributed among these distances:
28 21 0.30
29 47 0.68
30 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCATATTCATA
Found at i:72382132 original size:18 final size:19
Alignment explanation
Indices: 72382109--72382144 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
72382099 ATGGGCCTAA
72382109 TAGCCCA-TCGGGCCCATT
1 TAGCCCATTCGGGCCCATT
*
72382127 TAGCCCATTCTGGCCCAT
1 TAGCCCATTCGGGCCCAT
72382145 ATGGCCAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.17, C:0.39, G:0.19, T:0.25
Consensus pattern (19 bp):
TAGCCCATTCGGGCCCATT
Found at i:72387523 original size:44 final size:44
Alignment explanation
Indices: 72387460--72387550 Score: 182
Period size: 44 Copynumber: 2.1 Consensus size: 44
72387450 AGTTTATTAG
72387460 TTAAAGTTACCCCTGTTTCAGGACTTGGCTGGACTGACCTCTGT
1 TTAAAGTTACCCCTGTTTCAGGACTTGGCTGGACTGACCTCTGT
72387504 TTAAAGTTACCCCTGTTTCAGGACTTGGCTGGACTGACCTCTGT
1 TTAAAGTTACCCCTGTTTCAGGACTTGGCTGGACTGACCTCTGT
72387548 TTA
1 TTA
72387551 CTACGAAACA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (44 bp):
TTAAAGTTACCCCTGTTTCAGGACTTGGCTGGACTGACCTCTGT
Found at i:72388666 original size:93 final size:93
Alignment explanation
Indices: 72388559--72388729 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
72388549 GCCCCTAAGT
* *
72388559 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72388624 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
72388652 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72388717 CGAGTTCGGATGC
66 CGAGTTCGGATGC
72388730 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:72388726 original size:46 final size:46
Alignment explanation
Indices: 72388554--72388726 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
72388544 AACCCGCCCC
* * *
72388554 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
72388600 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
72388648 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
72388693 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
72388727 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:72390243 original size:168 final size:168
Alignment explanation
Indices: 72389965--72390300 Score: 672
Period size: 168 Copynumber: 2.0 Consensus size: 168
72389955 TTTCTATCTA
72389965 AAATTTGTGGTTACGAAACCACTATTCTGATTAGGCCCTAATTCAGGATATTACAAACTTAATTG
1 AAATTTGTGGTTACGAAACCACTATTCTGATTAGGCCCTAATTCAGGATATTACAAACTTAATTG
72390030 AGATCATTTTGACTTGGTTAAAAATAATTTCACTTGATTTTAAATTTTTTTCAAAATTTTCTAAG
66 AGATCATTTTGACTTGGTTAAAAATAATTTCACTTGATTTTAAATTTTTTTCAAAATTTTCTAAG
72390095 AGTTTATTGTAAGTATTAACAATTTTATTTCTTAGAAT
131 AGTTTATTGTAAGTATTAACAATTTTATTTCTTAGAAT
72390133 AAATTTGTGGTTACGAAACCACTATTCTGATTAGGCCCTAATTCAGGATATTACAAACTTAATTG
1 AAATTTGTGGTTACGAAACCACTATTCTGATTAGGCCCTAATTCAGGATATTACAAACTTAATTG
72390198 AGATCATTTTGACTTGGTTAAAAATAATTTCACTTGATTTTAAATTTTTTTCAAAATTTTCTAAG
66 AGATCATTTTGACTTGGTTAAAAATAATTTCACTTGATTTTAAATTTTTTTCAAAATTTTCTAAG
72390263 AGTTTATTGTAAGTATTAACAATTTTATTTCTTAGAAT
131 AGTTTATTGTAAGTATTAACAATTTTATTTCTTAGAAT
72390301 TCAAATTTAA
Statistics
Matches: 168, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
168 168 1.00
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.43
Consensus pattern (168 bp):
AAATTTGTGGTTACGAAACCACTATTCTGATTAGGCCCTAATTCAGGATATTACAAACTTAATTG
AGATCATTTTGACTTGGTTAAAAATAATTTCACTTGATTTTAAATTTTTTTCAAAATTTTCTAAG
AGTTTATTGTAAGTATTAACAATTTTATTTCTTAGAAT
Found at i:72397134 original size:27 final size:27
Alignment explanation
Indices: 72397103--72397280 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
72397093 TAAATTGTAC
72397103 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
72397130 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72397156 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
72397184 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
72397212 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72397239 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
72397266 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72397281 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:72397217 original size:82 final size:81
Alignment explanation
Indices: 72397104--72397259 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
72397094 AAATTGTACA
* *
72397104 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
72397168 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
72397185 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
72397250 TGCGAGTTGA
65 TGCGAATTGA
72397260 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:72397271 original size:82 final size:81
Alignment explanation
Indices: 72397100--72397280 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
72397090 GATTAAATTG
* *
72397100 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
72397165 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
72397181 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
72397245 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
72397263 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
72397281 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:72405197 original size:27 final size:27
Alignment explanation
Indices: 72405166--72405343 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
72405156 TAAATTGTAC
72405166 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
72405193 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72405219 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
72405247 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
72405275 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72405302 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
72405329 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72405344 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:72405280 original size:82 final size:81
Alignment explanation
Indices: 72405167--72405322 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
72405157 AAATTGTACA
* *
72405167 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
72405231 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
72405248 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
72405313 TGCGAGTTGA
65 TGCGAATTGA
72405323 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:72405334 original size:82 final size:81
Alignment explanation
Indices: 72405163--72405343 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
72405153 GATTAAATTG
* *
72405163 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
72405228 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
72405244 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
72405308 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
72405326 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
72405344 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Done.