Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 219 of 322
Found at i:72416146 original size:27 final size:27
Alignment explanation
Indices: 72416108--72416162 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
72416098 ACCCAAAAGT
72416108 AAACCTTATTTATAAAATTAAAAATTA
1 AAACCTTATTTATAAAATTAAAAATTA
72416135 AAACCTTATTTATAAAATTAAAAATTA
1 AAACCTTATTTATAAAATTAAAAATTA
72416162 A
1 A
72416163 CTAAGTCAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.36
Consensus pattern (27 bp):
AAACCTTATTTATAAAATTAAAAATTA
Found at i:72436869 original size:69 final size:69
Alignment explanation
Indices: 72436735--72436880 Score: 152
Period size: 69 Copynumber: 2.1 Consensus size: 69
72436725 AGTTGCACGT
* * * * * *
72436735 AGTGCTAGCCATATAATCGACGATGGTTGTGCCCAACACTAGTCAGATGAATTGATAGAAGTTGT
1 AGTGCTAGCCAGATAATCGACGATAGTTGTGCCCAACACTAGTCAGATGAACTGACAAAAATTGT
*
72436800 GTCC
66 GCCC
* * * *
72436804 AGTGCTAGCCAGATAA-CTGATGATAGTTGTGCCCAGCATTAGTTAGAT-AAGCTGACAAAAATT
1 AGTGCTAGCCAGATAATC-GACGATAGTTGTGCCCAACACTAGTCAGATGAA-CTGACAAAAATT
72436867 GTGCCC
64 GTGCCC
*
72436873 AGCGCTAG
1 AGTGCTAG
72436881 TCGAATGAAC
Statistics
Matches: 63, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
68 3 0.05
69 60 0.95
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (69 bp):
AGTGCTAGCCAGATAATCGACGATAGTTGTGCCCAACACTAGTCAGATGAACTGACAAAAATTGT
GCCC
Found at i:72436951 original size:20 final size:20
Alignment explanation
Indices: 72436926--72436974 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
72436916 AGTCCATAAA
72436926 ATCACATTTCATAACCCAAT
1 ATCACATTTCATAACCCAAT
*
72436946 ATCACATTTCATAACTCAAT
1 ATCACATTTCATAACCCAAT
*
72436966 ATCAGATTT
1 ATCACATTT
72436975 TCTTCAATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.39, C:0.24, G:0.02, T:0.35
Consensus pattern (20 bp):
ATCACATTTCATAACCCAAT
Found at i:72440088 original size:24 final size:24
Alignment explanation
Indices: 72440060--72440117 Score: 107
Period size: 24 Copynumber: 2.4 Consensus size: 24
72440050 CAACCAATTT
*
72440060 CCATACCAAATTCTACCAAAATGA
1 CCATACCAAATTCTACAAAAATGA
72440084 CCATACCAAATTCTACAAAAATGA
1 CCATACCAAATTCTACAAAAATGA
72440108 CCATACCAAA
1 CCATACCAAA
72440118 ATCATATTCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.48, C:0.29, G:0.03, T:0.19
Consensus pattern (24 bp):
CCATACCAAATTCTACAAAAATGA
Found at i:72440815 original size:29 final size:29
Alignment explanation
Indices: 72440781--72440916 Score: 150
Period size: 29 Copynumber: 4.7 Consensus size: 29
72440771 ACGATGGTTG
* *
72440781 TCACCATCTCTTTTCATAGTTGATGGTCA
1 TCACCATCCCTTTTCATAATTGATGGTCA
* * *
72440810 TCACCACCCCTTTTCATAATTGATAGCCGA
1 TCACCATCCCTTTTCATAATTGATGGTC-A
* * *
72440840 -AACTATCCCTTTTCATAATTCGATGGTCG
1 TCACCATCCCTTTTCATAATT-GATGGTCA
* *
72440869 TCACCATCCC-TTTCATAGTTGATGGTCG
1 TCACCATCCCTTTTCATAATTGATGGTCA
72440897 TCACCATCCCTTTTCATAAT
1 TCACCATCCCTTTTCATAAT
72440917 CGATAGCCGA
Statistics
Matches: 88, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
28 18 0.20
29 57 0.65
30 13 0.15
ACGTcount: A:0.23, C:0.29, G:0.12, T:0.37
Consensus pattern (29 bp):
TCACCATCCCTTTTCATAATTGATGGTCA
Found at i:72440895 original size:87 final size:88
Alignment explanation
Indices: 72440772--72440938 Score: 273
Period size: 87 Copynumber: 1.9 Consensus size: 88
72440762 AGTGTAATCA
* * *
72440772 CGATGGTTGTCACCATCTCTTTTCATAGTTGATGGTCATCACCACCCCTTTTCATAATTGATAGC
1 CGATGGTCGTCACCATCTCCTTTCATAGTTGATGGTCATCACCACCCCTTTTCATAATCGATAGC
72440837 CGAAACTATCCCTTTTCATAATT
66 CGAAACTATCCCTTTTCATAATT
* *
72440860 CGATGGTCGTCACCATC-CCTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAATCGATAGC
1 CGATGGTCGTCACCATCTCCTTTCATAGTTGATGGTCATCACCACCCCTTTTCATAATCGATAGC
*
72440924 CGAAGCTATCCCTTT
66 CGAAACTATCCCTTT
72440939 GCATTTGGTT
Statistics
Matches: 73, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
87 57 0.78
88 16 0.22
ACGTcount: A:0.22, C:0.28, G:0.14, T:0.35
Consensus pattern (88 bp):
CGATGGTCGTCACCATCTCCTTTCATAGTTGATGGTCATCACCACCCCTTTTCATAATCGATAGC
CGAAACTATCCCTTTTCATAATT
Found at i:72440934 original size:29 final size:29
Alignment explanation
Indices: 72440812--72440938 Score: 105
Period size: 29 Copynumber: 4.4 Consensus size: 29
72440802 GATGGTCATC
* * *
72440812 ACCACCCCTTTTCATAATTGATAGCCGAA
1 ACCATCCCTTTTCATAATCGATAGCCGTA
* * * *
72440841 ACTATCCCTTTTCATAATTCGATGGTCGTC
1 ACCATCCCTTTTCATAA-TCGATAGCCGTA
* * * * *
72440871 ACCATCCC-TTTCATAGTTGATGGTCGTC
1 ACCATCCCTTTTCATAATCGATAGCCGTA
72440899 ACCATCCCTTTTCATAATCGATAGCCG-A
1 ACCATCCCTTTTCATAATCGATAGCCGTA
*
72440927 AGCTATCCCTTT
1 A-CCATCCCTTT
72440939 GCATTTGGTT
Statistics
Matches: 79, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
28 20 0.25
29 45 0.57
30 14 0.18
ACGTcount: A:0.24, C:0.30, G:0.13, T:0.34
Consensus pattern (29 bp):
ACCATCCCTTTTCATAATCGATAGCCGTA
Found at i:72444416 original size:40 final size:40
Alignment explanation
Indices: 72444361--72444536 Score: 203
Period size: 40 Copynumber: 4.4 Consensus size: 40
72444351 ATGATAACCG
* * *
72444361 GGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCA
1 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAGTTCCA
* * *
72444401 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCA-TATCCC
1 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAGT-TCCA
** *
72444441 GGCTAAGTTTCGAAGGCATTTGTGCAAGTTACTAGTTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAGTTCCA
* * *
72444481 GGCTAAGTCCCGAAGGCATTTGTTCGAGTTACTA-TATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAGT-TCCA
*
72444521 GGCTATGTCCCGAAGG
1 GGCTAAGTCCCGAAGG
72444537 TATTCGAGTG
Statistics
Matches: 118, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 115 0.97
41 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAGTTCCA
Found at i:72444494 original size:80 final size:80
Alignment explanation
Indices: 72444361--72444536 Score: 262
Period size: 80 Copynumber: 2.2 Consensus size: 80
72444351 ATGATAACCG
*
72444361 GGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCAGGCTAAGTCCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTGCGCAAGTGACTAGTTCCAGGCTAAGTCCCGAAGGCATTTGTGC
72444426 GAGTTACCATATCCC
66 GAGTTACCATATCCC
** * * * *
72444441 GGCTAAGTTTCGAAGGCATTTGTGCAAGTTACTAGTTCCGGGCTAAGTCCCGAAGGCATTTGTTC
1 GGCTAAGTCCCGAAGGCATTTGCGCAAGTGACTAGTTCCAGGCTAAGTCCCGAAGGCATTTGTGC
* *
72444506 GAGTTACTATATCCG
66 GAGTTACCATATCCC
*
72444521 GGCTATGTCCCGAAGG
1 GGCTAAGTCCCGAAGG
72444537 TATTCGAGTG
Statistics
Matches: 84, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.27
Consensus pattern (80 bp):
GGCTAAGTCCCGAAGGCATTTGCGCAAGTGACTAGTTCCAGGCTAAGTCCCGAAGGCATTTGTGC
GAGTTACCATATCCC
Found at i:72452842 original size:6 final size:6
Alignment explanation
Indices: 72452812--72452920 Score: 53
Period size: 6 Copynumber: 17.8 Consensus size: 6
72452802 AAGAAACATT
* * * * *
72452812 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ACCAG- GTGACAAA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * * *
72452861 ATTAGA ATCAGA ATCAGA ATCAAA ATTAG- GTGACAGA ATTAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
*
72452910 ATCAGT ATCAG
1 ATCAGA ATCAG
72452921 GTAACAGAAT
Statistics
Matches: 74, Mismatches: 21, Indels: 16
0.67 0.19 0.14
Matches are distributed among these distances:
5 2 0.03
6 65 0.88
7 5 0.07
8 2 0.03
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:72452892 original size:37 final size:37
Alignment explanation
Indices: 72452833--72452919 Score: 129
Period size: 37 Copynumber: 2.4 Consensus size: 37
72452823 AATCAAAATG
*
72452833 AGAATCAGAATCAGAACCAGGTGACAAAATTAGAATC
1 AGAATCAGAATCAAAACCAGGTGACAAAATTAGAATC
** *
72452870 AGAATCAGAATCAAAATTAGGTGACAGAATTAGAATC
1 AGAATCAGAATCAAAACCAGGTGACAAAATTAGAATC
*
72452907 AGAATCAGTATCA
1 AGAATCAGAATCA
72452920 GGTAACAGAA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (37 bp):
AGAATCAGAATCAAAACCAGGTGACAAAATTAGAATC
Found at i:72452928 original size:31 final size:31
Alignment explanation
Indices: 72452864--72452930 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 31
72452854 TGACAAAATT
* *
72452864 AGAATCAGAATCAGAATCAAAATTAGGTGAC
1 AGAATCAGAATCAGAATCAAAATCAGGTAAC
* **
72452895 AGAATTAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAAAATCAGGTAAC
72452926 AGAAT
1 AGAAT
72452931 GTGAATGCAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.21
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAAAATCAGGTAAC
Found at i:72453221 original size:67 final size:67
Alignment explanation
Indices: 72453111--72453285 Score: 269
Period size: 67 Copynumber: 2.6 Consensus size: 67
72453101 ACAGATATAT
* * * * *
72453111 ATATATGTGGCGAAGCCACCAAATTACAGCGAGGCTGCTAGATATTGTGACGAAGTCACCAGAAC
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGCGACGAAGTCACCAGAAC
72453176 AG
66 AG
* *
72453178 ATATATGTGGCGAGGCCAGCAGATTGCAGCGAGGGTGCCAGATATTGCGACGAAGTCACCAGAAC
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGCGACGAAGTCACCAGAAC
72453243 AG
66 AG
* *
72453245 ATATATGTGGCGAGGCCACCAGATTGCAGCAAAGCTGCCAG
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAG
72453286 GACGCTTCCT
Statistics
Matches: 97, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
67 97 1.00
ACGTcount: A:0.31, C:0.22, G:0.29, T:0.18
Consensus pattern (67 bp):
ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGCGACGAAGTCACCAGAAC
AG
Found at i:72453534 original size:27 final size:27
Alignment explanation
Indices: 72453503--72453720 Score: 267
Period size: 27 Copynumber: 8.1 Consensus size: 27
72453493 AACACCCTAG
* * *
72453503 GGGTAAAATGGGAATTTTATAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* *
72453530 AGGTAAAACGGTAATTTTGTAAATCAA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* * *
72453557 GAGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* * *
72453584 GGGTAAAATGGTAATTCTGTAAATTGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
*
72453611 GGATAAAA-GAGTAATTTTGTAAATCGA
1 GGGTAAAACG-GTAATTTTGTAAATCGA
* *
72453638 GGGTAAGACGGTAATTTTGTAAATCGT
1 GGGTAAAACGGTAATTTTGTAAATCGA
** *
72453665 GGGTAAAATAGTAATTTTTTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
72453692 GGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
72453719 GG
1 GG
72453721 ATATTTTGGT
Statistics
Matches: 161, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
26 1 0.01
27 159 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.06, G:0.24, T:0.31
Consensus pattern (27 bp):
GGGTAAAACGGTAATTTTGTAAATCGA
Found at i:72453717 original size:81 final size:81
Alignment explanation
Indices: 72453503--72453720 Score: 294
Period size: 81 Copynumber: 2.7 Consensus size: 81
72453493 AACACCCTAG
* * * *
72453503 GGGTAAAATGGGAATTTTATAAATCGAAGGTAAAACGGTAATTTTGTAAATCAAGAGTAAAACAG
1 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACAG
72453568 TAATTCTGTAAATCGA
66 TAATTCTGTAAATCGA
* * * * * *
72453584 GGGTAAAATGGTAATTCTGTAAATTGAGGATAAAA-GAGTAATTTTGTAAATCGAGGGTAAGACG
1 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACG-GTAATTTTGTAAATCGAGGGTAAAACA
* *
72453648 GTAATTTTGTAAATCGT
65 GTAATTCTGTAAATCGA
* *
72453665 GGGTAAAATAGTAATTTTTTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGG
1 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGG
72453721 ATATTTTGGT
Statistics
Matches: 118, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
80 1 0.01
81 116 0.98
82 1 0.01
ACGTcount: A:0.39, C:0.06, G:0.24, T:0.31
Consensus pattern (81 bp):
GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACAG
TAATTCTGTAAATCGA
Found at i:72453753 original size:27 final size:27
Alignment explanation
Indices: 72453729--72453798 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
72453719 GGATATTTTG
* *
72453729 GTAATTCTATCCTACATGGGCATTTCA
1 GTAATTCTACCCTACAAGGGCATTTCA
*
72453756 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGCATTTCA
* *
72453783 GTAATGCTAGCCTACA
1 GTAATTCTACCCTACA
72453799 GATATGAGAT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.33
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGCATTTCA
Found at i:72455662 original size:6 final size:6
Alignment explanation
Indices: 72455632--72455706 Score: 82
Period size: 6 Copynumber: 12.3 Consensus size: 6
72455622 AAGAAATATT
* * *
72455632 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGGTG AT-AGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
72455681 ATCAGA ATCAGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCAGA AT
72455707 TAGGTGACAA
Statistics
Matches: 58, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
5 3 0.05
6 50 0.86
7 3 0.05
8 2 0.03
ACGTcount: A:0.49, C:0.13, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:72455694 original size:37 final size:38
Alignment explanation
Indices: 72455638--72455740 Score: 129
Period size: 37 Copynumber: 2.8 Consensus size: 38
72455628 TATTATCAGA
* *
72455638 ACTAGAATCAAAATGAGAATCAGAATCAGAATCAGGTG
1 ACTAGAATCAGAATCAGAATCAGAATCAGAATCAGGTG
*
72455676 A-TAGAATCAGAATCAGAATCAGAATCAGAATTAGGTG
1 ACTAGAATCAGAATCAGAATCAGAATCAGAATCAGGTG
* * * *
72455713 ACAAAAAT-AGAATCAGAATTAGTATCAG
1 ACTAGAATCAGAATCAGAATCAGAATCAG
72455741 GTAACAGAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
37 52 0.91
38 5 0.09
ACGTcount: A:0.49, C:0.12, G:0.19, T:0.20
Consensus pattern (38 bp):
ACTAGAATCAGAATCAGAATCAGAATCAGAATCAGGTG
Found at i:72455755 original size:37 final size:35
Alignment explanation
Indices: 72455641--72455758 Score: 111
Period size: 37 Copynumber: 3.4 Consensus size: 35
72455631 TATCAGAACT
*
72455641 AGAATCAAAATGAGAATCAGAATCAGAATCAGGTGA
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGT-A
* *
72455677 TAGAATCAGAATCAGAATCAGAATCAGAATTAGGT-
1 -AGAATCAAAATCAGAATCAGAATCAGAATCAGGTA
* *
72455712 -G-A-CAAAAAT-AGAATCAGAATTAGTATCAGGTAA
1 AGAATC-AAAATCAGAATCAGAATCAGAATCAGGT-A
72455745 CAGAATCAAAATCA
1 -AGAATCAAAATCA
72455759 AAATGTGAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
31 20 0.30
32 5 0.08
33 1 0.02
35 1 0.02
36 6 0.09
37 33 0.50
ACGTcount: A:0.50, C:0.12, G:0.19, T:0.19
Consensus pattern (35 bp):
AGAATCAAAATCAGAATCAGAATCAGAATCAGGTA
Found at i:72455758 original size:31 final size:31
Alignment explanation
Indices: 72455653--72455758 Score: 88
Period size: 31 Copynumber: 3.2 Consensus size: 31
72455643 AATCAAAATG
72455653 AGAATCAGAATCAGAATCAGGTGATAGAATCAGAATC
1 AGAATCAGAATCAGAATCA-G-G-T--AA-CAGAATC
* * *
72455690 AGAATCAGAATCAGAATTAGGTGACAAAAAT-
1 AGAATCAGAATCAGAATCAGGTAAC-AGAATC
* *
72455721 AGAATCAGAATTAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
*
72455752 AAAATCA
1 AGAATCA
72455759 AAATGTGAAT
Statistics
Matches: 58, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
30 4 0.07
31 28 0.48
32 5 0.09
34 1 0.02
35 1 0.02
36 1 0.02
37 18 0.31
ACGTcount: A:0.49, C:0.12, G:0.19, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTAACAGAATC
Found at i:72455929 original size:27 final size:26
Alignment explanation
Indices: 72455881--72455938 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 26
72455871 GCGAGGCTGC
*
72455881 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
72455908 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
72455934 CAGAT
1 CAGAT
72455939 GTATATATGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 6 0.22
27 21 0.78
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:72455985 original size:71 final size:67
Alignment explanation
Indices: 72455908--72456087 Score: 216
Period size: 67 Copynumber: 2.6 Consensus size: 67
72455898 TCACCAGATA
* * *
72455908 CAGATATTGTGGCTAGGCCACCAGAACAGATGTATATATGTGGCGAAGCCACCAAATTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACA-A---ATATATGTGGCGAAGCCACCAAATTGCAGCGA
72455973 GGCTAC
62 GGCTAC
* * * *
72455979 CAGATATTGTGACGAAGTCACCAGAACAAATATATGTGGCGAGGCCACTAGATTGCAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAAATATATGTGGCGAAGCCACCAAATTGCAGCGAGGCT
*
72456044 GC
66 AC
* * * *
72456046 TAGATATTGTGACGAAGTCACCAGAATAGATATATGTGGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAAATATATGTGGCGA
72456088 GGCTGCCAGA
Statistics
Matches: 98, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
67 73 0.74
70 1 0.01
71 24 0.24
ACGTcount: A:0.32, C:0.19, G:0.27, T:0.21
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAAATATATGTGGCGAAGCCACCAAATTGCAGCGAGGCT
AC
Found at i:72456034 original size:67 final size:67
Alignment explanation
Indices: 72455941--72456090 Score: 237
Period size: 67 Copynumber: 2.2 Consensus size: 67
72455931 GAACAGATGT
*
72455941 ATATATGTGGCGAAGCCACCAAATTGCAGCGAGGCTACCAGATATTGTGACGAAGTCACCAGAAC
1 ATATATGTGGCGAGGCCACCAAATTGCAGCGAGGCTACCAGATATTGTGACGAAGTCACCAGAAC
72456006 AA
66 AA
* * * * *
72456008 ATATATGTGGCGAGGCCACTAGATTGCAGCGAGGCTGCTAGATATTGTGACGAAGTCACCAGAAT
1 ATATATGTGGCGAGGCCACCAAATTGCAGCGAGGCTACCAGATATTGTGACGAAGTCACCAGAAC
*
72456073 AG
66 AA
72456075 ATATATGTGGCGAGGC
1 ATATATGTGGCGAGGC
72456091 TGCCAGAACG
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
67 76 1.00
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.21
Consensus pattern (67 bp):
ATATATGTGGCGAGGCCACCAAATTGCAGCGAGGCTACCAGATATTGTGACGAAGTCACCAGAAC
AA
Found at i:72456347 original size:27 final size:27
Alignment explanation
Indices: 72456312--72456530 Score: 258
Period size: 27 Copynumber: 8.1 Consensus size: 27
72456302 TTAACACCCT
* *
72456312 AGGGATAAAATGGTAATTTTATAAATCG
1 AGGG-TAAAACGGTAATTTTGTAAATCG
* *
72456340 AGGGTAAAACGGTAATTCTGTAAATCA
1 AGGGTAAAACGGTAATTTTGTAAATCG
* * * *
72456367 AGAGTAAAACAGTAATTCTATAAATCG
1 AGGGTAAAACGGTAATTTTGTAAATCG
*
72456394 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTTTGTAAATCG
* **
72456421 AGGATAAAATAGTAATTTTGTAAATCG
1 AGGGTAAAACGGTAATTTTGTAAATCG
* * * *
72456448 AGAGTAAGACGGTAATTGTGTAAATCA
1 AGGGTAAAACGGTAATTTTGTAAATCG
* **
72456475 AAGGTAAAATAGTAATTTTGTAAATCG
1 AGGGTAAAACGGTAATTTTGTAAATCG
72456502 AGGGTAAAACGGTAATTTTGTAAATCG
1 AGGGTAAAACGGTAATTTTGTAAATCG
72456529 AG
1 AG
72456531 AGTATTTTGG
Statistics
Matches: 159, Mismatches: 32, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
27 155 0.97
28 4 0.03
ACGTcount: A:0.42, C:0.07, G:0.22, T:0.29
Consensus pattern (27 bp):
AGGGTAAAACGGTAATTTTGTAAATCG
Found at i:72456429 original size:81 final size:81
Alignment explanation
Indices: 72456312--72456534 Score: 302
Period size: 81 Copynumber: 2.7 Consensus size: 81
72456302 TTAACACCCT
* * *
72456312 AGGGATAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGAGTAAAAC
1 AGGG-TAAAATGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGAGTAAAAC
*
72456377 AGTAATTCTATAAATCG
65 AGTAATTCTATAAATCA
* * * ** * *
72456394 AGGGTAAAACGGTAATTCTGTAAATCGAGGATAAAATAGTAATTTTGTAAATCGAGAGTAAGACG
1 AGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGAGTAAAACA
* *
72456459 GTAATTGTGTAAATCA
66 GTAATTCTATAAATCA
* *
72456475 AAGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGAGTA
1 AGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGAGTA
72456535 TTTTGGTAAT
Statistics
Matches: 121, Mismatches: 20, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
81 117 0.97
82 4 0.03
ACGTcount: A:0.42, C:0.07, G:0.22, T:0.29
Consensus pattern (81 bp):
AGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGAGTAAAACA
GTAATTCTATAAATCA
Found at i:72456545 original size:54 final size:54
Alignment explanation
Indices: 72456317--72456534 Score: 305
Period size: 54 Copynumber: 4.0 Consensus size: 54
72456307 ACCCTAGGGA
* *
72456317 TAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGAG
1 TAAAATAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGAG
* *
72456371 TAAAACAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAG-G
1 TAAAATAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGAG
* * * * *
72456424 ATAAAATAGTAATTTTGTAAATCGAGAGTAAGACGGTAATTGTGTAAATC-AAAGG
1 -TAAAATAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGA-G
* *
72456479 TAAAATAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGAG
1 TAAAATAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGAG
72456533 TA
1 TA
72456535 TTTTGGTAAT
Statistics
Matches: 145, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
53 2 0.01
54 140 0.97
55 3 0.02
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.29
Consensus pattern (54 bp):
TAAAATAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGAG
Found at i:72461674 original size:55 final size:53
Alignment explanation
Indices: 72461595--72461796 Score: 189
Period size: 55 Copynumber: 3.7 Consensus size: 53
72461585 TTAAGGATAC
* *
72461595 CATGTAAGACCATGCCAAGGCATGGCAATTGCTAAGGTTTCTA-AAGCAAGGAAAT
1 CATGTAAGACCATGCCAAGACATGGC-ATTGATAA-GTTTCTATAAGCAAGG-AAT
* *
72461650 CATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGG--T
1 CATGTAAGACCATGCCAAGACATGGCATTGATAAGTTTCTATAA-GC-AAGGAAT
* * * *
72461703 CCAATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTC-ATAAGACAAGGATAC
1 -C-ATGTAAGACCATGCCAAGACATGGCATTGATAAGTTTCTATAAG-CAAGGA-AT
* * *
72461758 CATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTC
1 CATGTAAGACCATGCCAAGACATGGCATTGATAAGTTTC
72461797 AAAAGGATAC
Statistics
Matches: 123, Mismatches: 14, Indels: 21
0.78 0.09 0.13
Matches are distributed among these distances:
52 5 0.04
53 42 0.34
54 16 0.13
55 56 0.46
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.23
Consensus pattern (53 bp):
CATGTAAGACCATGCCAAGACATGGCATTGATAAGTTTCTATAAGCAAGGAAT
Found at i:72461793 original size:108 final size:110
Alignment explanation
Indices: 72461596--72461794 Score: 298
Period size: 108 Copynumber: 1.8 Consensus size: 110
72461586 TAAGGATACC
*
72461596 ATGTAAGACCATGCCAAGGCATGGCAATTGCTAAGGTTTCTAAAGCAAGGAAATCATGTAAGACC
1 ATGTAAGACCATGCCAAGGCATGGCAATTGCTAAGGTTTCTAAAGCAAGGAAACCATGTAAGACC
*
72461661 ATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCA
66 ATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCA
* * *
72461706 ATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTC-ATAAGACAAGGATACCATGTAAGA
1 ATGTAAGACCATGCCAAGGCATGGCAATTGCTAAGGTTTCTA-AAG-CAAGGAAACCATGTAAGA
*
72461767 CCATGTCAAGACATGGCAATGGTAAGTT
64 CCATGTCAAGACATGGCAATGATAAGTT
72461795 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 6, Indels: 6
0.87 0.06 0.06
Matches are distributed among these distances:
106 1 0.01
107 6 0.07
108 43 0.53
109 6 0.07
110 25 0.31
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (110 bp):
ATGTAAGACCATGCCAAGGCATGGCAATTGCTAAGGTTTCTAAAGCAAGGAAACCATGTAAGACC
ATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCA
Found at i:72461819 original size:49 final size:52
Alignment explanation
Indices: 72461587--72461841 Score: 180
Period size: 55 Copynumber: 4.8 Consensus size: 52
72461577 ATTAGGGTTT
* * * * *
72461587 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGCTAAGGTTTCTAA-AGC
1 AAGGATACCACGTAAGACCATGACAAGACATGGCAA-TGGTAA-G-TTATAAGA-C
* * * * * * *
72461642 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCACGTAAGACCATGACAAGACATGGCAATGGTAAG-T--TATAAGAC
* * * * *
72461697 AAAGG-T-CCAATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGAC
1 -AAGGATACC-ACGTAAGACCATGACAAGACATGGCAATGGTAAGTT-ATAAGAC
* * *
72461750 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT-TCA-A-
1 AAGGATACCACGTAAGACCATGACAAGACATGGCAATGGTAAGTTATAAGAC
* *
72461799 AAGGATACCACGTAAGACCATGACAAGTCATGACAATGGTAAG
1 AAGGATACCACGTAAGACCATGACAAGACATGGCAATGGTAAG
72461842 GTACCTGCAT
Statistics
Matches: 168, Mismatches: 24, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
49 39 0.23
50 1 0.01
51 2 0.01
52 5 0.03
53 42 0.25
54 9 0.05
55 66 0.39
56 4 0.02
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.21
Consensus pattern (52 bp):
AAGGATACCACGTAAGACCATGACAAGACATGGCAATGGTAAGTTATAAGAC
Found at i:72469352 original size:40 final size:39
Alignment explanation
Indices: 72469290--72469464 Score: 167
Period size: 40 Copynumber: 4.4 Consensus size: 39
72469280 GAATGCTAAA
* * *
72469290 CGGGTTAAGTCCTGAAGACATTTGTGCTAGTGAT-TAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATAT-A-TC
* *
72469330 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGA-TATATC
*
72469370 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACCATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGA-TATATC
* * * * *
72469410 CGGGCTAAGACCCGATGGC-CTTGTGCGAGTGGTTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GATATATC
* *
72469449 C-GGCTAAATGCCGAAG
1 CGGGCTAAGTCCCGAAG
72469465 ATAATTGGGT
Statistics
Matches: 114, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
38 11 0.10
39 15 0.13
40 85 0.75
41 2 0.02
42 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.27
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATATATC
Found at i:72472260 original size:55 final size:54
Alignment explanation
Indices: 72472182--72472436 Score: 280
Period size: 55 Copynumber: 4.8 Consensus size: 54
72472172 ATTAGGGTTT
*
72472182 AAGGATACCATGTAAGACCATGTCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * *
72472237 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * * *
72472292 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
*
72472345 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC----GA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGGC
*
72472394 AAGGATACCATGTAAGACCATGGCAA-ATCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGA-CATGGCAATTGGTAAG
72472437 GGACCCGCGT
Statistics
Matches: 173, Mismatches: 19, Indels: 22
0.81 0.09 0.10
Matches are distributed among these distances:
48 1 0.01
49 41 0.24
52 5 0.03
53 41 0.24
54 12 0.07
55 69 0.40
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:72472388 original size:108 final size:110
Alignment explanation
Indices: 72472189--72472389 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
72472179 TTTAAGGATA
* *
72472189 CCATGTAAGACCATGTCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
72472254 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
72472299 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
72472361 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
72472390 TCGAAAGGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.57
109 7 0.08
110 26 0.31
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:72472626 original size:16 final size:16
Alignment explanation
Indices: 72472605--72472635 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
72472595 ATAAATTTGA
72472605 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
72472621 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
72472636 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:72479575 original size:53 final size:53
Alignment explanation
Indices: 72479392--72479599 Score: 249
Period size: 55 Copynumber: 3.8 Consensus size: 53
72479382 ATTAGGGTGT
* *
72479392 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTTGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-G-TTCATAAGGC
* * * *
72479447 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * *
72479502 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* *
72479555 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT
72479600 TCAAAAGGAT
Statistics
Matches: 130, Mismatches: 18, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
52 6 0.05
53 44 0.34
54 7 0.05
55 69 0.53
56 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:72479598 original size:108 final size:110
Alignment explanation
Indices: 72479399--72479599 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
72479389 TGTAAGGATA
* *
72479399 CCATGTAAGACCATGCCAAGGCATGGCAATTTGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
72479464 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
72479509 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
72479571 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
72479600 TCAAAAGGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.57
109 6 0.07
110 27 0.32
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:72489582 original size:53 final size:52
Alignment explanation
Indices: 72489408--72489639 Score: 213
Period size: 55 Copynumber: 4.4 Consensus size: 52
72489398 ATTAGGGTTT
* *
72489408 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTTGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-G-TTCTAAGGC
* * * * * * **
72489463 AAGGAAATCATGTAAGACCATGTCAATAAATGCCATTAATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C--TAAGGC
* * *
72489518 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTC-TAAGGC
* *
72489571 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT-TCAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCT-AAGGC
72489620 AAGGATACCATGTAAGACCA
1 AAGGATACCATGTAAGACCA
72489640 CGAAAAGTCA
Statistics
Matches: 146, Mismatches: 25, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
49 20 0.14
51 1 0.01
52 8 0.05
53 44 0.30
54 7 0.05
55 62 0.42
56 4 0.03
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.22
Consensus pattern (52 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTAAGGC
Found at i:72489875 original size:16 final size:16
Alignment explanation
Indices: 72489854--72489884 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
72489844 ATAAATTTGA
72489854 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
72489870 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
72489885 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:72494485 original size:14 final size:15
Alignment explanation
Indices: 72494452--72494485 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
72494442 AGAAATCGCA
72494452 GAAAATAAATTTTGG
1 GAAAATAAATTTTGG
*
72494467 GAAAATACATTTT-G
1 GAAAATAAATTTTGG
72494481 GAAAA
1 GAAAA
72494486 CACGATTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.50, C:0.03, G:0.18, T:0.29
Consensus pattern (15 bp):
GAAAATAAATTTTGG
Found at i:72496096 original size:25 final size:25
Alignment explanation
Indices: 72496065--72496161 Score: 95
Period size: 25 Copynumber: 3.9 Consensus size: 25
72496055 ACGTTTCGAC
**
72496065 CTACAACTCGTGTGAGCATACTGAT
1 CTACAACTCGTGTGAGCATACCAAT
* * ** *
72496090 TTACAACTTGTCAGATCATACCAAT
1 CTACAACTCGTGTGAGCATACCAAT
* **
72496115 CTACAGCTCAAGTGAGCATACCAAT
1 CTACAACTCGTGTGAGCATACCAAT
*
72496140 CTACAACTCGAGTGAGCATACC
1 CTACAACTCGTGTGAGCATACC
72496162 GATTCACAGC
Statistics
Matches: 55, Mismatches: 17, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
25 55 1.00
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (25 bp):
CTACAACTCGTGTGAGCATACCAAT
Found at i:72496174 original size:25 final size:25
Alignment explanation
Indices: 72496106--72496174 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
72496096 CTTGTCAGAT
*
72496106 CATACCAATCTACAGCTCAAGTGAG
1 CATACCAATCTACAGCTCGAGTGAG
*
72496131 CATACCAATCTACAACTCGAGTGAG
1 CATACCAATCTACAGCTCGAGTGAG
*
72496156 CATACCGAT-TCACAGCTCG
1 CATACCAATCT-ACAGCTCG
72496175 TATGGGCATA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 1 0.03
25 38 0.97
ACGTcount: A:0.33, C:0.30, G:0.16, T:0.20
Consensus pattern (25 bp):
CATACCAATCTACAGCTCGAGTGAG
Found at i:72496385 original size:13 final size:13
Alignment explanation
Indices: 72496367--72496413 Score: 53
Period size: 13 Copynumber: 3.6 Consensus size: 13
72496357 ACATAGTATA
72496367 TGGATGATTGAAT
1 TGGATGATTGAAT
72496380 TGGATGA-T-ACAT
1 TGGATGATTGA-AT
*
72496392 ATGGATAATTGAAT
1 -TGGATGATTGAAT
72496406 TGGATGAT
1 TGGATGAT
72496414 ACATGTATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
11 1 0.04
12 3 0.11
13 20 0.71
14 3 0.11
15 1 0.04
ACGTcount: A:0.34, C:0.02, G:0.28, T:0.36
Consensus pattern (13 bp):
TGGATGATTGAAT
Found at i:72496402 original size:26 final size:26
Alignment explanation
Indices: 72496364--72496417 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
72496354 GTTACATAGT
*
72496364 ATATGGATGATTGAATTGGATGATAC
1 ATATGGATAATTGAATTGGATGATAC
72496390 ATATGGATAATTGAATTGGATGATAC
1 ATATGGATAATTGAATTGGATGATAC
72496416 AT
1 AT
72496418 GTATATGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.37, C:0.04, G:0.24, T:0.35
Consensus pattern (26 bp):
ATATGGATAATTGAATTGGATGATAC
Found at i:72499491 original size:35 final size:35
Alignment explanation
Indices: 72499449--72499522 Score: 148
Period size: 35 Copynumber: 2.1 Consensus size: 35
72499439 AAAAAGGGTT
72499449 AGAATCGAGATTGAATTGAAGGATTGCCTAATTAG
1 AGAATCGAGATTGAATTGAAGGATTGCCTAATTAG
72499484 AGAATCGAGATTGAATTGAAGGATTGCCTAATTAG
1 AGAATCGAGATTGAATTGAAGGATTGCCTAATTAG
72499519 AGAA
1 AGAA
72499523 AGAGGTAGTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.39, C:0.08, G:0.26, T:0.27
Consensus pattern (35 bp):
AGAATCGAGATTGAATTGAAGGATTGCCTAATTAG
Found at i:72500439 original size:16 final size:16
Alignment explanation
Indices: 72500415--72500451 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
72500405 TTTAAAAAGG
*
72500415 AAAACAAATGAATCTT
1 AAAAAAAATGAATCTT
*
72500431 AAAAAAAATGAGTCTT
1 AAAAAAAATGAATCTT
72500447 AAAAA
1 AAAAA
72500452 CTTAATGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.62, C:0.08, G:0.08, T:0.22
Consensus pattern (16 bp):
AAAAAAAATGAATCTT
Found at i:72514946 original size:40 final size:40
Alignment explanation
Indices: 72514895--72515046 Score: 268
Period size: 40 Copynumber: 3.8 Consensus size: 40
72514885 CATTTGAATG
72514895 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
72514935 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
72514975 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * *
72515015 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
72515047 TTGTGGTTAT
Statistics
Matches: 108, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 108 1.00
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:72515058 original size:80 final size:80
Alignment explanation
Indices: 72514895--72515066 Score: 265
Period size: 80 Copynumber: 2.2 Consensus size: 80
72514885 CATTTGAATG
*
72514895 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATACCCGGGCTAAGACCCGAAGGCA
* *
72514960 TTTGTGCGAGTTGAT
66 ATTGTGCGAGTGGAT
* *
72514975 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATACCCGGGCTAAGACCCGAAGGCA
** *
72515040 ATTGTGCTTGTGGTT
66 ATTGTGCGAGTGGAT
72515055 ATATCC-GGCTAA
1 ATATCCGGGCTAA
72515067 ATTCCGAAGA
Statistics
Matches: 84, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 6 0.07
80 78 0.93
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATACCCGGGCTAAGACCCGAAGGCA
ATTGTGCGAGTGGAT
Found at i:72519918 original size:27 final size:27
Alignment explanation
Indices: 72519887--72520064 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
72519877 TAAATTGTAC
72519887 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
72519914 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72519940 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
72519968 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
72519996 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72520023 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
72520050 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72520065 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:72520001 original size:82 final size:81
Alignment explanation
Indices: 72519888--72520043 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
72519878 AAATTGTACA
* *
72519888 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
72519952 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
72519969 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
72520034 TGCGAGTTGA
65 TGCGAATTGA
72520044 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:72520055 original size:82 final size:81
Alignment explanation
Indices: 72519884--72520064 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
72519874 GATTAAATTG
* *
72519884 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
72519949 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
72519965 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
72520029 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
72520047 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
72520065 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:72527981 original size:27 final size:27
Alignment explanation
Indices: 72527950--72528127 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
72527940 TAAATTGTAC
72527950 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
72527977 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72528003 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
72528031 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
72528059 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72528086 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
72528113 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72528128 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:72528064 original size:82 final size:81
Alignment explanation
Indices: 72527951--72528106 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
72527941 AAATTGTACA
* *
72527951 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
72528015 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
72528032 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
72528097 TGCGAGTTGA
65 TGCGAATTGA
72528107 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:72528118 original size:82 final size:81
Alignment explanation
Indices: 72527947--72528127 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
72527937 GATTAAATTG
* *
72527947 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
72528012 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
72528028 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
72528092 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
72528110 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
72528128 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:72533174 original size:28 final size:29
Alignment explanation
Indices: 72533142--72533240 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
72533132 ATAATAAGCC
*
72533142 CGCACACTTAGTGCTTA-ATAGTCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
*
72533170 CGCACACTTAGTGC-TATATAATCAACCT
1 CGCACACTTAGTGCTTATATAATCAAACT
* ** *
72533198 CGCACACTTAGTGC-TATACAATTTGAACC
1 CGCACACTTAGTGCTTATATAA-TCAAACT
72533227 CGCACACTTAGTGC
1 CGCACACTTAGTGC
72533241 CAATCTCATG
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
27 2 0.03
28 43 0.69
29 17 0.27
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTATATAATCAAACT
Found at i:72533705 original size:12 final size:12
Alignment explanation
Indices: 72533688--72533713 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
72533678 TGGGCATAGT
72533688 TATGTATATATA
1 TATGTATATATA
72533700 TATGTATATATA
1 TATGTATATATA
72533712 TA
1 TA
72533714 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:72544079 original size:50 final size:49
Alignment explanation
Indices: 72544002--72544269 Score: 160
Period size: 46 Copynumber: 5.7 Consensus size: 49
72543992 CATGGGTAAG
* *
72544002 GTGCCGATACCATGTC-CAGACATGGTCTTACACTGGCTTTCACATATC
1 GTGCCGATGCCATGTCTCAGACATGGTCTTACACTGGCTTACACATATC
* * *
72544050 TGTGCCAATGCCATGTCTCAGACATGGTCTTACA-T---TGACACATCTC
1 -GTGCCGATGCCATGTCTCAGACATGGTCTTACACTGGCTTACACATATC
** *
72544096 GTAGCCGATG-CATGTCTCAGACAT-GTCTTACACTGGCTT--ATGTCTC
1 GT-GCCGATGCCATGTCTCAGACATGGTCTTACACTGGCTTACACATATC
* * * * * *
72544142 GAGGCCGATG-CATGTC-CTAGACAT-ATCTTACACTAGC-T-CTCGTCTC
1 G-TGCCGATGCCATGTCTC-AGACATGGTCTTACACTGGCTTACACATATC
* * * *
72544188 AATGCCGATGCCATGTCCCGGACATGGTCTTACACTGGC-T-CTCATAAT-
1 -GTGCCGATGCCATGTCTCAGACATGGTCTTACACTGGCTTACACAT-ATC
* *
72544236 GTGGCCGATG-CATGTCCCAAACAT-GTCTTACACT
1 GT-GCCGATGCCATGTCTCAGACATGGTCTTACACT
72544270 AGCTCACATG
Statistics
Matches: 180, Mismatches: 24, Indels: 33
0.76 0.10 0.14
Matches are distributed among these distances:
44 8 0.04
45 19 0.11
46 72 0.40
47 24 0.13
48 25 0.14
49 16 0.09
50 16 0.09
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (49 bp):
GTGCCGATGCCATGTCTCAGACATGGTCTTACACTGGCTTACACATATC
Found at i:72544154 original size:46 final size:47
Alignment explanation
Indices: 72544099--72544274 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 47
72544089 ACATCTCGTA
* *
72544099 GCCGATGCATGTCTCAGACATGTCTTACACTGGCT-TATGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTACGTCTCGAG
* * * * *
72544145 GCCGATGCATGTCCTAGACATATCTTACACTAGCTCT-CGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTACGTCTCGAG
* * * *
72544191 GCCGATGCCATGTCCCGGACATGGTCTTACACTGGCTCT-CATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTACGT-CTCGAG
* *
72544239 GCCGATGCATGTCCCAAACATGTCTTACACTAGCTC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTC
72544275 ACATGCATGA
Statistics
Matches: 107, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
46 58 0.54
47 25 0.23
48 23 0.21
49 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTACGTCTCGAG
Found at i:72544218 original size:94 final size:92
Alignment explanation
Indices: 72544099--72544274 Score: 230
Period size: 94 Copynumber: 1.9 Consensus size: 92
72544089 ACATCTCGTA
* ** * *
72544099 GCCGATGCATGTCTCAGACATGTCTTACACTGGCT-T-ATGTCTCGAGGCCGATGCATGTCCTAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCAT-AAT-GAGGCCGATGCATGTCCCAA
72544162 ACATATCTTACACTAGCTCTCGTCTCAAT
64 ACATATCTTACACTAGCTCTCGTCTCAAT
* *
72544191 GCCGATGCCATGTCCCGGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAA
*
72544256 ACATGTCTTACACTAGCTC
64 ACATATCTTACACTAGCTC
72544275 ACATGCATGA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
92 7 0.10
93 12 0.17
94 49 0.68
95 2 0.03
96 2 0.03
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAAAC
ATATCTTACACTAGCTCTCGTCTCAAT
Found at i:72547586 original size:86 final size:85
Alignment explanation
Indices: 72547442--72547601 Score: 214
Period size: 86 Copynumber: 1.9 Consensus size: 85
72547432 GACAAGTACA
* * * *
72547442 ATGCCGACGTCCCAGACGTGGTCTTACATGTAATTCAGTATCGATGCCTCTATCCCAGACAGGAT
1 ATGCCGACGTCCCAGACATGGTCTTACACGTAATTCAGAATCGATGCCTCTATCCCAGACACGAT
*
72547507 CTTATACGAAAACAGATACG
66 CTTACACGAAAACAGATACG
* * * *
72547527 ATGCCGATGTCCTAGACATGGTCTTACACGTAAATTTCA-AATCGATGCCTGTGTCCCAGACACG
1 ATGCCGACGTCCCAGACATGGTCTTACACGT-AA-TTCAGAATCGATGCCTCTATCCCAGACACG
72547591 ATCTTACACGA
64 ATCTTACACGA
72547602 TAATTCAGAT
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
85 27 0.42
86 33 0.52
87 4 0.06
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (85 bp):
ATGCCGACGTCCCAGACATGGTCTTACACGTAATTCAGAATCGATGCCTCTATCCCAGACACGAT
CTTACACGAAAACAGATACG
Found at i:72552142 original size:30 final size:31
Alignment explanation
Indices: 72552075--72552148 Score: 132
Period size: 31 Copynumber: 2.4 Consensus size: 31
72552065 ACGGTTACTG
72552075 GGCCGAAGCCTTTTCATAAATCATATCACTA
1 GGCCGAAGCCTTTTCATAAATCATATCACTA
*
72552106 GGCCGAAGCCTTTTCCTAAATCATATCACT-
1 GGCCGAAGCCTTTTCATAAATCATATCACTA
72552136 GGCCGAAGCCTTT
1 GGCCGAAGCCTTT
72552149 ACTATAAGCG
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
30 13 0.31
31 29 0.69
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.28
Consensus pattern (31 bp):
GGCCGAAGCCTTTTCATAAATCATATCACTA
Found at i:72552388 original size:24 final size:25
Alignment explanation
Indices: 72552361--72552412 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
72552351 GCCTAGCCGC
72552361 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
*
72552385 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
72552410 TTT
1 TTT
72552413 CGGTAAACTG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 6 0.23
25 20 0.77
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:72552437 original size:25 final size:25
Alignment explanation
Indices: 72552368--72552425 Score: 98
Period size: 25 Copynumber: 2.3 Consensus size: 25
72552358 CGCTTTTAAT
*
72552368 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
72552393 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
72552418 AACTGGGG
1 AACTGGGG
72552426 ATTAGCCCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:72553395 original size:27 final size:27
Alignment explanation
Indices: 72553365--72553462 Score: 110
Period size: 27 Copynumber: 3.6 Consensus size: 27
72553355 GTAAATCTAC
72553365 AAACCAAGGGTATTTC-AGTAATTTTGT
1 AAACCAAGGGTATTTCTA-TAATTTTGT
*
72553392 AAACCAATGGTATTTCTATAATTTT-T
1 AAACCAAGGGTATTTCTATAATTTTGT
*
72553418 AGAAAGTCAAGGGTATTTCTATAATTTTGT
1 --AAA-CCAAGGGTATTTCTATAATTTTGT
* *
72553448 AAATCAGGGGTATTT
1 AAACCAAGGGTATTT
72553463 TGGTAATTTT
Statistics
Matches: 62, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
26 1 0.02
27 33 0.53
28 7 0.11
29 20 0.32
30 1 0.02
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:72561082 original size:30 final size:31
Alignment explanation
Indices: 72561015--72561088 Score: 132
Period size: 31 Copynumber: 2.4 Consensus size: 31
72561005 ACGGTTACTG
72561015 GGCCGAAGCCTTTTCATAAATCATATCACTA
1 GGCCGAAGCCTTTTCATAAATCATATCACTA
*
72561046 GGCCGAAGCCTTTTCCTAAATCATATCACT-
1 GGCCGAAGCCTTTTCATAAATCATATCACTA
72561076 GGCCGAAGCCTTT
1 GGCCGAAGCCTTT
72561089 ACTATAAGCG
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
30 13 0.31
31 29 0.69
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.28
Consensus pattern (31 bp):
GGCCGAAGCCTTTTCATAAATCATATCACTA
Found at i:72561328 original size:24 final size:25
Alignment explanation
Indices: 72561301--72561352 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
72561291 GCCTAGCCGC
72561301 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
*
72561325 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
72561350 TTT
1 TTT
72561353 CGGTAAACTG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 6 0.23
25 20 0.77
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:72561377 original size:25 final size:25
Alignment explanation
Indices: 72561308--72561365 Score: 98
Period size: 25 Copynumber: 2.3 Consensus size: 25
72561298 CGCTTTTAAT
*
72561308 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
72561333 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
72561358 AACTGGGG
1 AACTGGGG
72561366 ATTAGCCCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:72562249 original size:27 final size:27
Alignment explanation
Indices: 72562187--72562264 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
72562177 GGGCATATTC
72562187 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
72562214 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
72562241 GTCTTTTTACC-TATTAGGGGTATT
1 GTCATTTTACCATA-CAGGGGTATT
72562265 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 3 0.07
27 39 0.91
28 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:72562419 original size:28 final size:27
Alignment explanation
Indices: 72562368--72562492 Score: 126
Period size: 27 Copynumber: 4.6 Consensus size: 27
72562358 AGAAAGTCAA
* * * *
72562368 GGGTTTTTTTGTAATTTTGTAAATTAG
1 GGGTATTTTGGTAATTTTATAAACTAG
* *
72562395 GGGTATTTTTGGTAATTTTACAAA-TCG
1 GGGTA-TTTTGGTAATTTTATAAACTAG
* *
72562422 AGGGTATTTCGGTAATTTCATAAACTAG
1 -GGGTATTTTGGTAATTTTATAAACTAG
* * *
72562450 TGGTATTTTCGTAATTTTATAACCTAG
1 GGGTATTTTGGTAATTTTATAAACTAG
72562477 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
72562493 CTACCCTATA
Statistics
Matches: 79, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
27 57 0.72
28 22 0.28
ACGTcount: A:0.26, C:0.06, G:0.22, T:0.46
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACTAG
Found at i:72562455 original size:55 final size:55
Alignment explanation
Indices: 72562309--72562468 Score: 160
Period size: 56 Copynumber: 2.9 Consensus size: 55
72562299 ATCTACAAAC
* * * * *
72562309 CAAGGTTATTTCAGTAATTTTGTAAACCAATGGTATTTTTATAATTTTTAGAAAGT
1 CAAGGGTATTTCAGTAATTTTGTAAACTAGTGGTATTTTTGTAA-TTTTACAAAGT
* ** * *
72562365 CAAGGGTTTTTTTGTAATTTTGTAAATTAGGGGTATTTTTGGTAATTTTACAAA-T
1 CAAGGGTATTTCAGTAATTTTGTAAACTAGTGGTATTTTT-GTAATTTTACAAAGT
* * ** *
72562420 CGAGGGTATTTCGGTAATTTCATAAACTAGTGGTATTTTCGTAATTTTA
1 CAAGGGTATTTCAGTAATTTTGTAAACTAGTGGTATTTTTGTAATTTTA
72562469 TAACCTAGGG
Statistics
Matches: 84, Mismatches: 19, Indels: 4
0.79 0.18 0.04
Matches are distributed among these distances:
54 9 0.11
55 32 0.38
56 40 0.48
57 3 0.04
ACGTcount: A:0.29, C:0.07, G:0.18, T:0.46
Consensus pattern (55 bp):
CAAGGGTATTTCAGTAATTTTGTAAACTAGTGGTATTTTTGTAATTTTACAAAGT
Found at i:72562545 original size:26 final size:25
Alignment explanation
Indices: 72562513--72562615 Score: 98
Period size: 27 Copynumber: 3.8 Consensus size: 25
72562503 GAGTTATTTT
*
72562513 AGTAATTTTACAATTGAGGGTAAAAC
1 AGTAATTTTA-AATCGAGGGTAAAAC
* *
72562539 GGTAATTTTGTAAATCGAGGGTAAAAT
1 AGTAA-TTT-TAAATCGAGGGTAAAAC
*
72562566 AGTAATTTTGTAAATCAAGGGTAAAAC
1 AGTAA-TTT-TAAATCGAGGGTAAAAC
*
72562593 AGTGATTCTATAAATCGAGGGTA
1 AGTAATT-T-TAAATCGAGGGTA
72562616 CTTGTGTAAT
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
26 6 0.09
27 57 0.88
28 2 0.03
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (25 bp):
AGTAATTTTAAATCGAGGGTAAAAC
Found at i:72562562 original size:27 final size:27
Alignment explanation
Indices: 72562528--72562615 Score: 122
Period size: 27 Copynumber: 3.3 Consensus size: 27
72562518 TTTTACAATT
*
72562528 GAGGGTAAAACGGTAATTTTGTAAATC
1 GAGGGTAAAACAGTAATTTTGTAAATC
*
72562555 GAGGGTAAAATAGTAATTTTGTAAATC
1 GAGGGTAAAACAGTAATTTTGTAAATC
* * * *
72562582 AAGGGTAAAACAGTGATTCTATAAATC
1 GAGGGTAAAACAGTAATTTTGTAAATC
72562609 GAGGGTA
1 GAGGGTA
72562616 CTTGTGTAAT
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (27 bp):
GAGGGTAAAACAGTAATTTTGTAAATC
Found at i:72566111 original size:30 final size:30
Alignment explanation
Indices: 72566077--72566137 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
72566067 TCCTTAACTC
72566077 AAACTTTAGAAAAATTACAATTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
* * * * *
72566107 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
72566137 A
1 A
72566138 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTAGAAAAATTACAATTTTGCCCCT
Found at i:72568071 original size:40 final size:40
Alignment explanation
Indices: 72568027--72568290 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
72568017 GCTCCTCGTT
* *
72568027 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
72568067 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
72568107 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
72568147 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
72568187 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
72568226 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCA
72568267 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
72568291 CATCATTCAA
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
38 2 0.01
39 49 0.24
40 146 0.71
41 9 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:72580771 original size:26 final size:26
Alignment explanation
Indices: 72580742--72580792 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
72580732 AGCTCGGGCA
72580742 TTCGCATCCATAAGTGAACTCGGACG
1 TTCGCATCCATAAGTGAACTCGGACG
72580768 TTCGCATCCATAAGTGAACTCGGAC
1 TTCGCATCCATAAGTGAACTCGGAC
72580793 TCAACTCAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (26 bp):
TTCGCATCCATAAGTGAACTCGGACG
Found at i:72582149 original size:21 final size:20
Alignment explanation
Indices: 72582115--72582159 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
72582105 AAAACAGGGC
72582115 ACACGCTCTGTGGAAG-GTTA
1 ACACGCTCTGTGGAAGAG-TA
72582135 ACACGCTCGTGTGGAAGAGTA
1 ACACGCTC-TGTGGAAGAGTA
72582156 ACAC
1 ACAC
72582160 ACCCGTTTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 8 0.35
21 14 0.61
22 1 0.04
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (20 bp):
ACACGCTCTGTGGAAGAGTA
Found at i:72582367 original size:27 final size:27
Alignment explanation
Indices: 72582329--72582383 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
72582319 AAAAACTAAG
*
72582329 TGTGGGATCTATCCCATGCCAACACAT
1 TGTGGGATCTATCCCAAGCCAACACAT
72582356 TGTGGGATCTATCCCAAGCCAACACAT
1 TGTGGGATCTATCCCAAGCCAACACAT
72582383 T
1 T
72582384 TGGCCAAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (27 bp):
TGTGGGATCTATCCCAAGCCAACACAT
Found at i:72582982 original size:46 final size:46
Alignment explanation
Indices: 72582931--72583069 Score: 147
Period size: 46 Copynumber: 3.0 Consensus size: 46
72582921 TACATTGACA
*
72582931 CATCTCATAGCCGATGCACGTCCCAGACATGTCTTACACTAGCTCT
1 CATCTCATAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT
* *
72582977 CATCTCA-ATGCCGATGCCATGTCCCAAACATGGTCTTACACTACCTCT
1 CATCTCATA-GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT
* * * * * *
72583025 CATAAT-GTGGTCGATGCATGTCCCAGATATGTTTTACACTAGCTC
1 CAT-CTCATAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
72583070 ACATGCATGA
Statistics
Matches: 77, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
45 1 0.01
46 27 0.35
47 24 0.31
48 24 0.31
49 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (46 bp):
CATCTCATAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT
Found at i:72583025 original size:48 final size:46
Alignment explanation
Indices: 72582931--72583027 Score: 133
Period size: 48 Copynumber: 2.1 Consensus size: 46
72582921 TACATTGACA
* *
72582931 CATCTCATAGCCGATGCACGTCCCAGACATGTCTTACACTAGCTCT
1 CATCTCATAGCCGATGCACGTCCCAAACATGTCTTACACTACCTCT
*
72582977 CATCTCA-ATGCCGATGCCATGTCCCAAACATGGTCTTACACTACCTCT
1 CATCTCATA-GCCGATG-CACGTCCCAAACAT-GTCTTACACTACCTCT
72583025 CAT
1 CAT
72583028 AATGTGGTCG
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
45 1 0.02
46 14 0.31
47 12 0.27
48 18 0.40
ACGTcount: A:0.25, C:0.35, G:0.13, T:0.27
Consensus pattern (46 bp):
CATCTCATAGCCGATGCACGTCCCAAACATGTCTTACACTACCTCT
Found at i:72583045 original size:47 final size:45
Alignment explanation
Indices: 72582940--72583065 Score: 121
Period size: 47 Copynumber: 2.7 Consensus size: 45
72582930 ACATCTCATA
* * *
72582940 GCCGATGCACGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAT
1 GCCGATGCATGTCCCAAACATGTCTTACACTACCTCTCA-CTCAAT
72582986 GCCGATGCCATGTCCCAAACATGGTCTTACACTACCTCTCA-T-AATGT
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTACCTCTCACTCAA--T
* * * *
72583033 GGTCGATGCATGTCCCAGATATGTTTTACACTA
1 -GCCGATGCATGTCCCAAACATGTCTTACACTA
72583066 GCTCACATGC
Statistics
Matches: 68, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
45 2 0.03
46 18 0.26
47 25 0.37
48 23 0.34
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.29
Consensus pattern (45 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTACCTCTCACTCAAT
Found at i:72585219 original size:35 final size:35
Alignment explanation
Indices: 72585137--72585235 Score: 110
Period size: 35 Copynumber: 2.8 Consensus size: 35
72585127 TTATGAATAT
* * ***
72585137 TCTAATTAC-GATTCATATGTTAAGCATGCTATTGT
1 TCTAATT-CTGATTCACATGTTAAGCATGCCATAAA
* *
72585172 TCTACTTATGATTCACATGTTAAGCATGCCATAAA
1 TCTAATTCTGATTCACATGTTAAGCATGCCATAAA
*
72585207 TCTAATTCTGATTCGCATGTTAAGCATGC
1 TCTAATTCTGATTCACATGTTAAGCATGC
72585236 AACTGTGTTA
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
35 53 1.00
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.38
Consensus pattern (35 bp):
TCTAATTCTGATTCACATGTTAAGCATGCCATAAA
Found at i:72593425 original size:42 final size:42
Alignment explanation
Indices: 72593304--72593425 Score: 138
Period size: 43 Copynumber: 2.9 Consensus size: 42
72593294 TACCGTACCA
*
72593304 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
** * ** * *
72593346 ATGTTAATAGCTTAGCTATGGTCTTACACG-AAGTCTCATATCG
1 ATG-CCATATCCCAGATATGGTCTTACATGTAA-TCTCATATCG
*
72593389 ATGCCATATCCCAGATATTGTCTTACATGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCA
72593426 GTAACCCTAA
Statistics
Matches: 61, Mismatches: 16, Indels: 6
0.73 0.19 0.07
Matches are distributed among these distances:
42 28 0.46
43 33 0.54
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
Found at i:72594527 original size:13 final size:13
Alignment explanation
Indices: 72594509--72594534 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72594499 GCCCAAACGT
72594509 CAAAATTTTCAAA
1 CAAAATTTTCAAA
72594522 CAAAATTTTCAAA
1 CAAAATTTTCAAA
72594535 AAATTATTCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
CAAAATTTTCAAA
Found at i:72596786 original size:40 final size:40
Alignment explanation
Indices: 72596731--72596887 Score: 219
Period size: 40 Copynumber: 4.0 Consensus size: 40
72596721 TGGAAAAAAA
* *
72596731 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGTTGGTTAT
1 TATAACCGGGTTAAGTCCCAAAGGCATTCGTGCTGGTTAT
*
72596771 TATAACCGGGTTAAGTCCCAAAGGCATTTGTGC-GTGTTAT
1 TATAACCGGGTTAAGTCCCAAAGGCATTCGTGCTG-GTTAT
* *
72596811 TATAACCAGGTTAAGTCCCAAAGGCATTCGTGCGGGTTA-
1 TATAACCGGGTTAAGTCCCAAAGGCATTCGTGCTGGTTAT
* * *
72596850 TATAACCGAGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCAAAGGCATTCGTGCTGGTT
72596888 GTTACATCCG
Statistics
Matches: 105, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
39 34 0.32
40 70 0.67
41 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCAAAGGCATTCGTGCTGGTTAT
Found at i:72604880 original size:11 final size:11
Alignment explanation
Indices: 72604864--72604893 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
72604854 ACTAAGGTGA
72604864 TTTTCTTTTTT
1 TTTTCTTTTTT
72604875 TTTTCTTTTTT
1 TTTTCTTTTTT
72604886 TTTCTCTT
1 TTT-TCTT
72604894 CATTTAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (11 bp):
TTTTCTTTTTT
Found at i:72604952 original size:13 final size:14
Alignment explanation
Indices: 72604934--72604971 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
72604924 TATATGTACT
*
72604934 AAATAATATAAT-A
1 AAATAATAAAATGA
72604947 AAATAATAAAATGA
1 AAATAATAAAATGA
*
72604961 AAATAACAAAA
1 AAATAATAAAA
72604972 AAAAGAGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (14 bp):
AAATAATAAAATGA
Found at i:72606686 original size:20 final size:20
Alignment explanation
Indices: 72606636--72606687 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
72606626 TTGGAGAGTC
*
72606636 ACACGCCTGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
* *
72606656 ACATGCTCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
72606676 ACACGCCCGTGT
1 ACACGCCCGTGT
72606688 CCTCAGCCCG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.12, C:0.27, G:0.37, T:0.25
Consensus pattern (20 bp):
ACACGCCCGTGTGGCTTGGG
Found at i:72609158 original size:24 final size:24
Alignment explanation
Indices: 72609104--72609199 Score: 133
Period size: 24 Copynumber: 4.0 Consensus size: 24
72609094 GCTTTATCAT
*
72609104 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
72609129 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
72609153 ACAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
72609176 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
72609200 CACTTCCTCC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
23 22 0.34
24 30 0.47
25 12 0.19
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:72609181 original size:23 final size:23
Alignment explanation
Indices: 72609125--72609197 Score: 119
Period size: 23 Copynumber: 3.1 Consensus size: 23
72609115 CCTAGCCTCT
*
72609125 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
72609148 TTTTAACAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
72609172 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
72609195 TTT
1 TTT
72609198 TACACTTCCT
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
23 25 0.54
24 21 0.46
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:72609273 original size:20 final size:20
Alignment explanation
Indices: 72609248--72609313 Score: 89
Period size: 20 Copynumber: 3.4 Consensus size: 20
72609238 TTATGATTAC
*
72609248 ATCATGTGCATATCATAAAT
1 ATCATGTGCATATCATACAT
*
72609268 ATCATGTCCATATCAT-CAT
1 ATCATGTGCATATCATACAT
*
72609287 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
72609307 ACCATGT
1 ATCATGT
72609314 TTATTAAAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
19 16 0.41
20 23 0.59
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:72609382 original size:25 final size:25
Alignment explanation
Indices: 72609350--72609397 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
72609340 ATACATAAAC
* * *
72609350 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
72609375 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
72609398 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:72611589 original size:40 final size:40
Alignment explanation
Indices: 72611530--72611693 Score: 283
Period size: 40 Copynumber: 4.1 Consensus size: 40
72611520 TGGGATTTAA
*
72611530 CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
72611570 CCGAATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
72611610 CCGGATACAGTGACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
72611650 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
72611690 CCGG
1 CCGG
72611694 TTATCATCCG
Statistics
Matches: 117, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 117 1.00
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.21
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:72620292 original size:31 final size:31
Alignment explanation
Indices: 72620254--72620317 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
72620244 CCTTTTCATA
*
72620254 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACAGGGCCGAAGCCT
**
72620285 TTTCATATTTCATATTACAGGGCCGAAGCCT
1 TTTCATATTTCATAACACAGGGCCGAAGCCT
72620316 TT
1 TT
72620318 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTTCATAACACAGGGCCGAAGCCT
Found at i:72620582 original size:23 final size:24
Alignment explanation
Indices: 72620525--72620606 Score: 112
Period size: 24 Copynumber: 3.4 Consensus size: 24
72620515 CTGGAGGCCT
* *
72620525 AGCCTCTTTTAATAACTTGGGCAAA
1 AGCC-CTTTTAATAACTAGGGCATA
*
72620550 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTAGGGCATA
72620574 AGCCC-TTTAATAACTAGGGCATA
1 AGCCCTTTTAATAACTAGGGCATA
*
72620597 AGCCATTTTA
1 AGCCCTTTTA
72620607 CACTTCCTCC
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
23 21 0.40
24 27 0.52
25 4 0.08
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTAGGGCATA
Found at i:72620682 original size:20 final size:20
Alignment explanation
Indices: 72620657--72620721 Score: 103
Period size: 20 Copynumber: 3.2 Consensus size: 20
72620647 ATGATTACAT
*
72620657 CATGTGCATATCACACATAC
1 CATGTGCATATCATACATAC
**
72620677 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAC
72620697 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
72620717 CATGT
1 CATGT
72620722 TTATCAAAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.32, C:0.25, G:0.12, T:0.31
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:72620790 original size:25 final size:25
Alignment explanation
Indices: 72620758--72620805 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
72620748 ATACATAAAC
* * *
72620758 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
72620783 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
72620806 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:72623066 original size:28 final size:28
Alignment explanation
Indices: 72623034--72623098 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
72623024 ATTTACTAGA
*
72623034 ATACCCCTATGTATGCAAAATTACCAT-T
1 ATACCCCTATGTATGCAAAATGACC-TCT
72623062 ATACCCCTATGTATGCAAAATGACCTCT
1 ATACCCCTATGTATGCAAAATGACCTCT
72623090 ATACCCCTA
1 ATACCCCTA
72623099 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.34, C:0.29, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCTCT
Found at i:72623235 original size:28 final size:27
Alignment explanation
Indices: 72623204--72623293 Score: 83
Period size: 27 Copynumber: 3.2 Consensus size: 27
72623194 AGGGAGCGTC
**
72623204 CTGGTGGTTATGCCACAAACTATCTGTT
1 CTGGTGGCCATGCCACAAA-TATCTGTT
* * *
72623232 CTGGTAGCCCTGCCACATATATCTGTT
1 CTGGTGGCCATGCCACAAATATCTGTT
*
72623259 CTGGTGG-CACTGCCACAACATATTTGTAT
1 CTGGTGGCCA-TGCCACAA-ATATCTGT-T
72623288 CTGGTG
1 CTGGTG
72623294 ACTCTGTCAC
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
26 1 0.02
27 21 0.42
28 21 0.42
29 7 0.14
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.33
Consensus pattern (27 bp):
CTGGTGGCCATGCCACAAATATCTGTT
Found at i:72623262 original size:27 final size:28
Alignment explanation
Indices: 72623214--72623276 Score: 92
Period size: 27 Copynumber: 2.3 Consensus size: 28
72623204 CTGGTGGTTA
*
72623214 TGCCACAAACTATCTGTTCTGGTAGCCC
1 TGCCACAAACTATCTGTTCTGGTAGCAC
* *
72623242 TGCCACATA-TATCTGTTCTGGTGGCAC
1 TGCCACAAACTATCTGTTCTGGTAGCAC
72623269 TGCCACAA
1 TGCCACAA
72623277 CATATTTGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 23 0.74
28 8 0.26
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (28 bp):
TGCCACAAACTATCTGTTCTGGTAGCAC
Found at i:72623304 original size:29 final size:28
Alignment explanation
Indices: 72623214--72623304 Score: 80
Period size: 27 Copynumber: 3.2 Consensus size: 28
72623204 CTGGTGGTTA
*
72623214 TGCCACAA-ACTATCTGTTCTGGT-AGCCC
1 TGCCACAACA-TATCTGTTCTGGTGA-CAC
* *
72623242 TGCCAC-ATATATCTGTTCTGGTGGCAC
1 TGCCACAACATATCTGTTCTGGTGACAC
* *
72623269 TGCCACAACATATTTGTATCTGGTGACTC
1 TGCCACAACATATCTGT-TCTGGTGACAC
*
72623298 TGTCACA
1 TGCCACA
72623305 TTTTCAGTAT
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
27 22 0.42
28 15 0.29
29 15 0.29
ACGTcount: A:0.22, C:0.27, G:0.19, T:0.32
Consensus pattern (28 bp):
TGCCACAACATATCTGTTCTGGTGACAC
Found at i:72628342 original size:47 final size:47
Alignment explanation
Indices: 72628266--72628378 Score: 156
Period size: 47 Copynumber: 2.4 Consensus size: 47
72628256 TCGCATAACT
* * *
72628266 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTT-GGCCC
1 TATCACATATATACACTTTCACATCCATCACATCGGCCA-TTAGGCCC
* * *
72628313 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGCCC
72628360 TATCACATATATACACTTT
1 TATCACATATATACACTTT
72628379 GTGACAGCCC
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
46 2 0.03
47 56 0.97
ACGTcount: A:0.27, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGCCC
Found at i:72629404 original size:49 final size:49
Alignment explanation
Indices: 72629333--72629440 Score: 193
Period size: 49 Copynumber: 2.2 Consensus size: 49
72629323 GGGGTGTTAC
72629333 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
72629382 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATAT
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
72629431 ACA--TTCACAT
1 ACACTTTCACAT
72629441 CACAATTATC
Statistics
Matches: 58, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
47 7 0.12
49 51 0.88
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.33
Consensus pattern (49 bp):
ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
Found at i:72631484 original size:43 final size:43
Alignment explanation
Indices: 72631436--72631521 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
72631426 TACTCACATC
72631436 ATAAACACAGAATATAACCTTTAATTATTTATAAGACTCGGTT
1 ATAAACACAGAATATAACCTTTAATTATTTATAAGACTCGGTT
72631479 ATAAACACAGAATATAACCTTTAATTATTTATAAGACTCGGTT
1 ATAAACACAGAATATAACCTTTAATTATTTATAAGACTCGGTT
72631522 TCGTGGTCCC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.42, C:0.14, G:0.09, T:0.35
Consensus pattern (43 bp):
ATAAACACAGAATATAACCTTTAATTATTTATAAGACTCGGTT
Found at i:72632642 original size:40 final size:40
Alignment explanation
Indices: 72632543--72633706 Score: 1988
Period size: 40 Copynumber: 28.9 Consensus size: 40
72632533 CGAATACACG
* * * *
72632543 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * ** * *
72632583 -AACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
72632622 TCACTAGCACGAATGCTCTTCAGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
72632662 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
** *
72632702 TCACTAGCACAAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
72632742 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
** *
72632782 TCACTAGCACAAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
72632822 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
72632862 CCACTAGCATGAATGCTCTTCGGTTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATG-----C---TCTTCGGGACTTAGCCCGGATACA
* * *
72632910 TCACTGGCTTGAATGCTCTTCGGGACTTAGCCCGAATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
72632950 TCACTGGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
72632990 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
72633030 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
72633070 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
72633110 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
72633150 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
72633190 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
72633230 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
72633270 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
72633310 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
72633350 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
72633390 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
72633430 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
72633470 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
72633510 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
72633550 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
72633590 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
72633630 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
72633670 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
72633707 CATTGTCGAG
Statistics
Matches: 1071, Mismatches: 44, Indels: 18
0.95 0.04 0.02
Matches are distributed among these distances:
39 32 0.03
40 1001 0.93
43 1 0.00
45 1 0.00
48 36 0.03
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:72638443 original size:40 final size:40
Alignment explanation
Indices: 72638361--72638571 Score: 311
Period size: 40 Copynumber: 5.3 Consensus size: 40
72638351 GCTCCTCGTT
* * *
72638361 CAAATGCCTTCGGGACAT-AGCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
72638400 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCTCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
72638440 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
72638480 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
72638520 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
72638559 CAAATGCCTTCGG
1 CAAATGCCTTCGG
72638572 ATCTTAGTCC
Statistics
Matches: 158, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 50 0.32
40 106 0.67
41 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:72638617 original size:79 final size:80
Alignment explanation
Indices: 72638363--72638619 Score: 309
Period size: 79 Copynumber: 3.2 Consensus size: 80
72638353 TCCTCGTTCA
*
72638363 AATGCCTTCGGGACATAG-CCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGATT-TAGT-ATCTCGCACAAATGCCTTCGGGACTTAACCCGG
72638425 ATTTAGTAACTCT-CAC
64 ATTTAGTAACTCTACAC
* * *
72638441 AAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGA
72638506 TTTAGTAACTCGTACA-
65 TTTAGTAACTC-TACAC
* **
72638522 AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
*
72638585 TATT-GTCACT-TAGCAC
65 T-TTAGTAACTCTA-CAC
72638601 AA-GCCTTCGGGACTTAGCC
1 AATGCCTTCGGGACTTAGCC
72638620 TGGACAGCAT
Statistics
Matches: 157, Mismatches: 11, Indels: 20
0.84 0.06 0.11
Matches are distributed among these distances:
77 2 0.01
78 14 0.09
79 73 0.46
80 63 0.40
81 3 0.02
82 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGAT
TTAGTAACTCTACAC
Found at i:72639720 original size:12 final size:12
Alignment explanation
Indices: 72639703--72639727 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
72639693 GATGAGCATT
72639703 TTTTTTTCTTTC
1 TTTTTTTCTTTC
72639715 TTTTTTTCTTTC
1 TTTTTTTCTTTC
72639727 T
1 T
72639728 AGTTTCGGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTTTTTCTTTC
Found at i:72642566 original size:48 final size:48
Alignment explanation
Indices: 72642507--72642772 Score: 238
Period size: 48 Copynumber: 5.5 Consensus size: 48
72642497 ATTGTCGATA
* * * * *
72642507 CCATGTTCCAAACATGGTCTTACACTGGCTTACATGTCGAGGTTGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTTACATGTCAATGTTGATG
* * *
72642555 CCATGTCCCAAACATGGTCTTCCACTAGC-T-CTTGTTTCAATGTTGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTTACATG--TCAATGTTGATG
* * *** * *
72642603 GCATGTCCCAGACATGGTCTTAGACTAGGACACATGTCAATGTCGATA
1 CCATGTCCCAGACATGGTCTTACACTAGCTTACATGTCAATGTTGATG
72642651 CCATGTCCCAGACATGGTCTTACACTAGCTCT-CA--T-AATGTGGCTGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCT-TACATGTCAATGT---TGATG
* ** ** *
72642699 CCATGTCCTAGACATGGTCTTACACTAGCACACATGTCAATGCCGATT
1 CCATGTCCCAGACATGGTCTTACACTAGCTTACATGTCAATGTTGATG
*
72642747 CCATGTCCCATACATGGTCTTACACT
1 CCATGTCCCAGACATGGTCTTACACT
72642773 GGCTCTCACC
Statistics
Matches: 176, Mismatches: 30, Indels: 24
0.77 0.13 0.10
Matches are distributed among these distances:
45 5 0.03
46 4 0.02
47 1 0.01
48 158 0.90
50 4 0.02
51 4 0.02
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (48 bp):
CCATGTCCCAGACATGGTCTTACACTAGCTTACATGTCAATGTTGATG
Found at i:72642677 original size:96 final size:95
Alignment explanation
Indices: 72642507--72642870 Score: 299
Period size: 96 Copynumber: 3.8 Consensus size: 95
72642497 ATTGTCGATA
* * * ** * * ** *
72642507 CCATGTTCCAAACATGGTCTTACACTGGCTTACATGTCGAGGTTGATGCCATGTCCCAAACATGG
1 CCATGTCCCAGACATGGTCTTACACTAGCACACATGTCAATGCCGATACCATGTCCCAAACATGG
* **
72642572 TCTTCCACTAGCTCTTGTTTCAATGT-TGATG
66 TCTTACACTAGCTCTT-CAT-AATGTGTGATG
* * * * *
72642603 GCATGTCCCAGACATGGTCTTAGACTAGGACACATGTCAATGTCGATACCATGTCCCAGACATGG
1 CCATGTCCCAGACATGGTCTTACACTAGCACACATGTCAATGCCGATACCATGTCCCAAACATGG
72642668 TCTTACACTAGCTC-TCATAATGTGGCTGATG
66 TCTTACACTAGCTCTTCATAATGT-G-TGATG
* * *
72642699 CCATGTCCTAGACATGGTCTTACACTAGCACACATGTCAATGCCGATTCCATGTCCCATACATGG
1 CCATGTCCCAGACATGGTCTTACACTAGCACACATGTCAATGCCGATACCATGTCCCAAACATGG
* * *
72642764 TCTTACACTGGCTC-TCACCATAT-TTTCGATG
66 TCTTACACTAGCTCTTCA-TA-ATGTGT-GATG
** * * * * * * * *
72642795 CCATGTTTCA-ACATGATCTTACACTGGCTCTCATAT-TATGGCCGACACCATGTCCCAGACATG
1 CCATGTCCCAGACATGGTCTTACACTAGCACACATGTCAAT-GCCGATACCATGTCCCAAACATG
*
72642858 GTCTTACGCTAGC
65 GTCTTACACTAGC
72642871 ACACATATCA
Statistics
Matches: 221, Mismatches: 40, Indels: 15
0.80 0.14 0.05
Matches are distributed among these distances:
93 5 0.02
94 3 0.01
95 54 0.24
96 155 0.70
97 2 0.01
98 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (95 bp):
CCATGTCCCAGACATGGTCTTACACTAGCACACATGTCAATGCCGATACCATGTCCCAAACATGG
TCTTACACTAGCTCTTCATAATGTGTGATG
Found at i:72642762 original size:144 final size:143
Alignment explanation
Indices: 72642497--72642876 Score: 374
Period size: 144 Copynumber: 2.6 Consensus size: 143
72642487 CAAGCGGTGA
* * *
72642497 ATTGTCGATACCATGTTCCAAACATGGTCTTACACTGGCT-TACAT-GTCGAGGTTGATGCCATG
1 ATTGTCGATACCATGTTCC-AACATGGTCTTACACTGGCTCT-CATAAT-GTGGCTGATGCCATG
* * * *** * ** *
72642560 TCCCAAACATGGTCTTCCACTAGCTCTTGTTTCAATGTTGATGGCATGTCCCAGACATGGTCTTA
63 TCCCAGACATGGTCTTACACTAGCACACATGTCAATGCCGATGCCATGTCCCAGACATGGTCTTA
* **
72642625 GACTAGGACACAT-GTCA-
128 CACT-GG-CAC-TCACCAT
* *
72642642 A-TGTCGATACCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCTGATGCCATGTC
1 ATTGTCGATACCATGTTCCA-ACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCCATGTC
* * *
72642706 CTAGACATGGTCTTACACTAGCACACATGTCAATGCCGATTCCATGTCCCATACATGGTCTTACA
65 CCAGACATGGTCTTACACTAGCACACATGTCAATGCCGATGCCATGTCCCAGACATGGTCTTACA
*
72642771 CTGGCTCTCACCAT
130 CTGGCACTCACCAT
* * * * * * * **
72642785 ATTTTCGATGCCATGTTTCAACATGATCTTACACTGGCTCTCATATTATGGCCGACACCATGTCC
1 ATTGTCGATACCATGTTCCAACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCCATGTCC
*
72642850 CAGACATGGTCTTACGCTAGCACACAT
66 CAGACATGGTCTTACACTAGCACACAT
72642877 ATCACCCAAA
Statistics
Matches: 194, Mismatches: 35, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
141 1 0.01
142 4 0.02
143 67 0.35
144 119 0.61
145 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.30
Consensus pattern (143 bp):
ATTGTCGATACCATGTTCCAACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCCATGTCC
CAGACATGGTCTTACACTAGCACACATGTCAATGCCGATGCCATGTCCCAGACATGGTCTTACAC
TGGCACTCACCAT
Found at i:72642799 original size:48 final size:46
Alignment explanation
Indices: 72642551--72642870 Score: 198
Period size: 48 Copynumber: 6.7 Consensus size: 46
72642541 TGTCGAGGTT
* * ** *
72642551 GATGCCATGTCCCAAACATGGTCTTCCACTAGCTCTTGTTTCAA-TGTT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTC---TCACAATTGTC
* * * **
72642599 GATGGCATGTCCCAGACATGGTCTTAGACTAGGACACATGTCAA-TGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTA-G-CTC-TCACAATTGTC
* * *
72642647 GATACCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAAT-TGTC
* * * *
72642694 TGATGCCATGTCCTAGACATGGTCTTACACTAGCACACATGTCAA-TGCC
1 -GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA---CAATTGTC
* * * *
72642743 GATTCCATGTCCCATACATGGTCTTACACTGGCTCTCACCATATTTTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-CA-ATTGTC
** * * * * *
72642791 GATGCCATGTTTCA-ACATGATCTTACACTGGCTCTCATATTATGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACA--ATTGTC
** *
72642838 GACACCATGTCCCAGACATGGTCTTACGCTAGC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC
72642871 ACACATATCA
Statistics
Matches: 214, Mismatches: 46, Indels: 24
0.75 0.16 0.08
Matches are distributed among these distances:
45 3 0.01
46 5 0.02
47 41 0.19
48 157 0.73
49 4 0.02
50 2 0.01
51 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (46 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAATTGTC
Found at i:72642878 original size:48 final size:47
Alignment explanation
Indices: 72642604--72642878 Score: 214
Period size: 48 Copynumber: 5.8 Consensus size: 47
72642594 ATGTTGATGG
* * * * *
72642604 CATGTCCCAGACATGGTCTTAGACTAGGACACATGTCAATGTCGATAC
1 CATGTCCCAGACATGGTCTTACACTAGCACACATAT-TATGCCGATAC
* * * * * *
72642652 CATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCTGATGC
1 CATGTCCCAGACATGGTCTTACACTAGCACACATATTAT-GCCGATAC
* * * *
72642700 CATGTCCTAGACATGGTCTTACACTAGCACACATGTCAATGCCGATTC
1 CATGTCCCAGACATGGTCTTACACTAGCACACATAT-TATGCCGATAC
* * * * *
72642748 CATGTCCCATACATGGTCTTACACTGGCTCTCACCATATT-T-TCGATGC
1 CATGTCCCAGACATGGTCTTACACTAG--CACA-CATATTATGCCGATAC
** * * * * *
72642796 CATGTTTCA-ACATGATCTTACACTGGCTCTCATATTATGGCCGACAC
1 CATGTCCCAGACATGGTCTTACACTAGCACACATATTAT-GCCGATAC
*
72642843 CATGTCCCAGACATGGTCTTACGCTAGCACACATAT
1 CATGTCCCAGACATGGTCTTACACTAGCACACATAT
72642879 CACCCAAATG
Statistics
Matches: 176, Mismatches: 42, Indels: 18
0.75 0.18 0.08
Matches are distributed among these distances:
44 6 0.03
45 4 0.02
47 28 0.16
48 129 0.73
49 2 0.01
50 3 0.02
51 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.29
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTAGCACACATATTATGCCGATAC
Found at i:72645737 original size:37 final size:37
Alignment explanation
Indices: 72645687--72645765 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
72645677 TTATTACGAA
* * *
72645687 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
72645724 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
72645761 GTCTT
1 GTCTT
72645766 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:72645962 original size:47 final size:47
Alignment explanation
Indices: 72645884--72646334 Score: 794
Period size: 47 Copynumber: 9.6 Consensus size: 47
72645874 CCCTTCGGGA
* * * * * *
72645884 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72645931 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72645978 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72646025 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72646072 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72646119 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72646166 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72646213 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72646260 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72646307 CTTATTACATATATATACACTTTCACAT
1 CTTA-T-CACATATATACACTTTCACAT
72646335 CACAATTATC
Statistics
Matches: 390, Mismatches: 12, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
47 369 0.95
48 1 0.00
49 20 0.05
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72649066 original size:40 final size:40
Alignment explanation
Indices: 72649021--72649217 Score: 232
Period size: 40 Copynumber: 4.9 Consensus size: 40
72649011 CGAATACACG
* * * * *
72649021 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * * ** * ** *
72649061 ACACCAGCACGAATGCTCTTTGGGGTTTAGCACAAATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
72649101 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
72649141 TCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
72649181 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
72649218 TTAGTAACTC
Statistics
Matches: 130, Mismatches: 27, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 130 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:72649250 original size:80 final size:80
Alignment explanation
Indices: 72649021--72649258 Score: 214
Period size: 80 Copynumber: 3.0 Consensus size: 80
72649011 CGAATACACG
* * * * * * * *
72649021 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGG--ACATAACACCAGCACGAATGCTCTTTGG
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACAT-A-ACTAGCACCAATGCTCCTCGG
** * ** *
72649084 GGTTTAGCACAAATATA
64 GACTTAGCCCGGATACA
* *
72649101 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATAACTAGCACCAATGCTCCTCGGGA
72649166 CTTAGCCCGGATACA
66 CTTAGCCCGGATACA
* ** * *
72649181 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATGC-CTTC-GG
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA-TAACTAGCACCAATGCTCCTCGGG
*
72649244 ATCTTAGTCCGGATA
65 A-CTTAGCCCGGATA
72649259 TGGTCACTTA
Statistics
Matches: 132, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
79 3 0.02
80 112 0.85
81 13 0.10
82 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATAACTAGCACCAATGCTCCTCGGGA
CTTAGCCCGGATACA
Found at i:72649634 original size:29 final size:28
Alignment explanation
Indices: 72649600--72649673 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 28
72649590 TAATCAACCA
*
72649600 CGCACACTTAGTGCCATGTACTTT-AAAC
1 CGCACACTTAGTGCCATGCA-TTTCAAAC
*
72649628 TCGCACACTTAGTGCCATGCATTTCAAGC
1 -CGCACACTTAGTGCCATGCATTTCAAAC
72649657 CAGCACACTTAGTGCCA
1 C-GCACACTTAGTGCCA
72649674 ATCTCATAAC
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
28 4 0.10
29 37 0.90
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCCATGCATTTCAAAC
Found at i:72649720 original size:43 final size:43
Alignment explanation
Indices: 72649659--72649929 Score: 533
Period size: 43 Copynumber: 6.3 Consensus size: 43
72649649 TTTCAAGCCA
*
72649659 GCACACTTAGTGCCAATCTCATAACCGTGAACACTTATTGCCC
1 GCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCC
72649702 GCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCC
1 GCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCC
72649745 GCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCC
1 GCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCC
72649788 GCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCC
1 GCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCC
72649831 GCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCC
1 GCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCC
72649874 GCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCC
1 GCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCC
72649917 GCACACTTAGTGC
1 GCACACTTAGTGC
72649930 TGAAAACCAA
Statistics
Matches: 227, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 227 1.00
ACGTcount: A:0.28, C:0.34, G:0.14, T:0.24
Consensus pattern (43 bp):
GCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCC
Found at i:72650886 original size:47 final size:47
Alignment explanation
Indices: 72650832--72651096 Score: 485
Period size: 47 Copynumber: 5.6 Consensus size: 47
72650822 CATATATGGC
* *
72650832 CACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTT
1 CACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTT
*
72650879 CACATTCATCACATTGGCTATTAGGCCTTATCACATATATACACTTT
1 CACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTT
72650926 CACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTT
1 CACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTT
72650973 CACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTT
1 CACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTT
72651020 CACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTT
1 CACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTT
* *
72651067 CACATTCATCCCATCGGCCATTAGGCCTTA
1 CACATTCATCACATTGGCCATTAGGCCTTA
72651097 CTATCATTTC
Statistics
Matches: 214, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 214 1.00
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (47 bp):
CACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTT
Found at i:72650961 original size:22 final size:22
Alignment explanation
Indices: 72650933--72651055 Score: 66
Period size: 22 Copynumber: 5.3 Consensus size: 22
72650923 TTTCACATTC
72650933 ATCACATTGGCCATTAGGCCTT
1 ATCACATTGGCCATTAGGCCTT
*** *** *
72650955 ATCACATATATACACTTTCACATT
1 ATCACAT-TGGCCA-TTAGGCCTT
72650979 CATCACATTGGCCATTAGGCCTT
1 -ATCACATTGGCCATTAGGCCTT
*** *** *
72651002 ATCACATATATACACTTTCACATT
1 ATCACAT-TGGCCA-TTAGGCCTT
72651026 CATCACATTGGCCATTAGGCCTT
1 -ATCACATTGGCCATTAGGCCTT
72651049 ATCACAT
1 ATCACAT
72651056 ATATACACTT
Statistics
Matches: 67, Mismatches: 28, Indels: 12
0.63 0.26 0.11
Matches are distributed among these distances:
22 21 0.31
23 16 0.24
24 16 0.24
25 14 0.21
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTAGGCCTT
Found at i:72660183 original size:25 final size:25
Alignment explanation
Indices: 72660154--72660204 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
72660144 TAATTAAAGG
72660154 GGAAAGACTAAACAAACGCTAGAAA
1 GGAAAGACTAAACAAACGCTAGAAA
* *
72660179 GGAAAGAGTAAACAAATGCTAGAAA
1 GGAAAGACTAAACAAACGCTAGAAA
72660204 G
1 G
72660205 AGGAGAATGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.55, C:0.12, G:0.24, T:0.10
Consensus pattern (25 bp):
GGAAAGACTAAACAAACGCTAGAAA
Found at i:72665485 original size:24 final size:26
Alignment explanation
Indices: 72665448--72665500 Score: 92
Period size: 24 Copynumber: 2.1 Consensus size: 26
72665438 TAAGTCCGCA
72665448 CACTCAGTGCTATATAATC-AACTCG
1 CACTCAGTGCTATATAATCAAACTCG
72665473 CACT-AGTGCTATATAATCAAACTCG
1 CACTCAGTGCTATATAATCAAACTCG
72665498 CAC
1 CAC
72665501 ACTTAGTGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 14 0.52
25 13 0.48
ACGTcount: A:0.34, C:0.28, G:0.11, T:0.26
Consensus pattern (26 bp):
CACTCAGTGCTATATAATCAAACTCG
Done.