Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 222 of 322
Found at i:73372227 original size:46 final size:47
Alignment explanation
Indices: 73372055--73372228 Score: 218
Period size: 46 Copynumber: 3.7 Consensus size: 47
73372045 TAACCTGCTA
*
73372055 ATAAGTGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCATCC
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGCATTCGCATCC
*
73372101 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACATCTC
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA-G-C-A-TTCGCATC-C
* *
73372152 A-CA---AACTCGGACTCAACTCAATGAGCTCGGA-CATTCGCATCC
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGCATTCGCATCC
73372194 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
73372229 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 7, Indels: 22
0.79 0.05 0.16
Matches are distributed among these distances:
42 4 0.04
43 6 0.05
44 1 0.01
46 59 0.54
47 29 0.26
48 1 0.01
49 1 0.01
50 5 0.05
51 4 0.04
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.20
Consensus pattern (47 bp):
ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGCATTCGCATCC
Found at i:73374489 original size:13 final size:14
Alignment explanation
Indices: 73374471--73374530 Score: 52
Period size: 13 Copynumber: 4.2 Consensus size: 14
73374461 GAATATCTTT
73374471 AAAAATAAT-TTTA
1 AAAAATAATATTTA
*
73374484 AAAAATTATATTTAA
1 AAAAATAATATTT-A
*
73374499 AATTAAAAAATATTTA
1 AA--AAATAATATTTA
*
73374515 AAATAT-ATATTTA
1 AAAAATAATATTTA
73374528 AAA
1 AAA
73374531 TATTATAAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
13 18 0.47
14 5 0.13
15 3 0.08
16 3 0.08
17 9 0.24
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
AAAAATAATATTTA
Found at i:73374531 original size:13 final size:13
Alignment explanation
Indices: 73374508--73374533 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
73374498 AAATTAAAAA
73374508 ATATTTAAAATAT
1 ATATTTAAAATAT
73374521 ATATTTAAAATAT
1 ATATTTAAAATAT
73374534 TATAAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
ATATTTAAAATAT
Found at i:73374626 original size:22 final size:22
Alignment explanation
Indices: 73374601--73374685 Score: 86
Period size: 22 Copynumber: 3.9 Consensus size: 22
73374591 TTATGATATT
*
73374601 AAAAATTTCTATTTAAAATTTA
1 AAAAATTTATATTTAAAATTTA
*
73374623 AAAAA-TAATATTT-AAATTTA
1 AAAAATTTATATTTAAAATTTA
*
73374643 ATAAAATATATATTTAAAATTTTA
1 A-AAAATTTATATTTAAAA-TTTA
*
73374667 AAAAA-TAATATTATAAAAT
1 AAAAATTTATATT-TAAAAT
73374686 ATTTCAAATA
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
20 8 0.15
21 10 0.19
22 17 0.33
23 12 0.23
24 5 0.10
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (22 bp):
AAAAATTTATATTTAAAATTTA
Found at i:73374647 original size:23 final size:21
Alignment explanation
Indices: 73374610--73374683 Score: 96
Period size: 21 Copynumber: 3.4 Consensus size: 21
73374600 TAAAAATTTC
*
73374610 TATTTAAAATTTAAAAAATAA
1 TATTTAAATTTTAAAAAATAA
73374631 TATTTAAA-TTTAATAAAATATA
1 TATTTAAATTTTAA-AAAATA-A
73374653 TATTTAAAATTTTAAAAAATAA
1 TATTT-AAATTTTAAAAAATAA
73374675 TATTATAAA
1 TATT-TAAA
73374684 ATATTTCAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 9
0.84 0.00 0.16
Matches are distributed among these distances:
20 5 0.10
21 14 0.29
22 14 0.29
23 10 0.21
24 5 0.10
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
TATTTAAATTTTAAAAAATAA
Found at i:73374771 original size:20 final size:20
Alignment explanation
Indices: 73374743--73374792 Score: 84
Period size: 21 Copynumber: 2.5 Consensus size: 20
73374733 AACAAAGGAC
73374743 AAATAAAAAAACTTAAAAAG
1 AAATAAAAAAACTTAAAAAG
73374763 TAAATAAAAAAACTTAAAAAG
1 -AAATAAAAAAACTTAAAAAG
73374784 AAA-AAAAAA
1 AAATAAAAAA
73374793 GGAAAAAGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
19 6 0.21
20 3 0.10
21 20 0.69
ACGTcount: A:0.78, C:0.04, G:0.04, T:0.14
Consensus pattern (20 bp):
AAATAAAAAAACTTAAAAAG
Found at i:73380650 original size:46 final size:46
Alignment explanation
Indices: 73380600--73380772 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
73380590 TGGTTGAGCA
*
73380600 TCCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
73380646 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
73380691 CATCCGAACCCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
73380739 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
73380773 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:73380756 original size:93 final size:93
Alignment explanation
Indices: 73380597--73380767 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
73380587 GGATGGTTGA
* * *
73380597 GCATCCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACCCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
73380662 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
73380690 GCATCCGAACCCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAGCTCGTTGAGT
1 GCATCCGAACCCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
73380755 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
73380768 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACCCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:73390649 original size:22 final size:22
Alignment explanation
Indices: 73390621--73390670 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
73390611 GAAGTGTTAT
*
73390621 TGCAGTCACTAACACTGGAATG
1 TGCAGTCACTAACACTAGAATG
73390643 TGCAGTCACTAACACTAGAATG
1 TGCAGTCACTAACACTAGAATG
73390665 TGCAGT
1 TGCAGT
73390671 GACCGTTTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (22 bp):
TGCAGTCACTAACACTAGAATG
Found at i:73394505 original size:31 final size:31
Alignment explanation
Indices: 73394467--73394528 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
73394457 AGTCAACAAG
*
73394467 GCATTCCTAATGATGCCTTGAAGATGTAATT
1 GCATTCCTAATGATGCCTTGAAGATGCAATT
*
73394498 GCATTCCTGATGATGCCTTGAAGATGCAATT
1 GCATTCCTAATGATGCCTTGAAGATGCAATT
73394529 ATGTCCTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (31 bp):
GCATTCCTAATGATGCCTTGAAGATGCAATT
Found at i:73401490 original size:21 final size:21
Alignment explanation
Indices: 73401464--73401517 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
73401454 ATTGTTGAGA
*
73401464 AGGAAGTTGCTGCTGCAAAAG
1 AGGAAGTTGCTGCTGAAAAAG
*
73401485 AGGAAGTTGTTGCTGAAAAAG
1 AGGAAGTTGCTGCTGAAAAAG
*
73401506 AAGAAGTTGCTG
1 AGGAAGTTGCTG
73401518 AAAATGAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.35, C:0.09, G:0.33, T:0.22
Consensus pattern (21 bp):
AGGAAGTTGCTGCTGAAAAAG
Found at i:73404743 original size:34 final size:34
Alignment explanation
Indices: 73404705--73404774 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
73404695 GAAATGCAAT
*
73404705 GATAGACAAAATTGAATCCATGATTGAGAAATAA
1 GATAGACAAAAATGAATCCATGATTGAGAAATAA
73404739 GATAGACAAAAATGAATCCATGATTGAGAAATAA
1 GATAGACAAAAATGAATCCATGATTGAGAAATAA
73404773 GA
1 GA
73404775 GCTTGGACAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.51, C:0.09, G:0.19, T:0.21
Consensus pattern (34 bp):
GATAGACAAAAATGAATCCATGATTGAGAAATAA
Found at i:73405325 original size:24 final size:25
Alignment explanation
Indices: 73405272--73405325 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
73405262 CATAGCCCTA
*
73405272 GGGAA-CGAAAACTTCCACAATCTC
1 GGGAATCGAAAACTTCCACAACCTC
**
73405296 AAGAATCG-AAACTTCCACAACCTC
1 GGGAATCGAAAACTTCCACAACCTC
73405320 GGGAAT
1 GGGAAT
73405326 AAGAACATCC
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
24 22 0.92
25 2 0.08
ACGTcount: A:0.39, C:0.28, G:0.17, T:0.17
Consensus pattern (25 bp):
GGGAATCGAAAACTTCCACAACCTC
Found at i:73407413 original size:10 final size:10
Alignment explanation
Indices: 73407398--73407430 Score: 66
Period size: 10 Copynumber: 3.3 Consensus size: 10
73407388 TGAATAACTC
73407398 ATCTTGTATA
1 ATCTTGTATA
73407408 ATCTTGTATA
1 ATCTTGTATA
73407418 ATCTTGTATA
1 ATCTTGTATA
73407428 ATC
1 ATC
73407431 CACTAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.30, C:0.12, G:0.09, T:0.48
Consensus pattern (10 bp):
ATCTTGTATA
Found at i:73409491 original size:43 final size:42
Alignment explanation
Indices: 73409444--73409678 Score: 229
Period size: 43 Copynumber: 5.7 Consensus size: 42
73409434 CCAACGTCGT
* *
73409444 AGACATGGTCTTACATGCAATCACATATCGATGCCACTGTCCC
1 AGACATGGTCTTACACG-AATCACATATCGATGCCAATGTCCC
* *
73409487 AGACATGGTTTTACACGAATCAAATA-CGATGCCAATGTCCC
1 AGACATGGTCTTACACGAATCACATATCGATGCCAATGTCCC
* *
73409528 AGACATGGTCTTTCACGTAATCACATATCGATGTCAATGTCCC
1 AGACATGGTCTTACACG-AATCACATATCGATGCCAATGTCCC
* * **
73409571 AGACGTGGTCTTACACGAGAACACATAT---TG--AAAAT-CC
1 AGACATGGTCTTACACGA-ATCACATATCGATGCCAATGTCCC
* *
73409608 ---TATGGTCTTACACGTAATCACATATCGATGCCAACGTCCC
1 AGACATGGTCTTACACG-AATCACATATCGATGCCAATGTCCC
* *
73409648 AGACATGGTCTTACAGGAGAACACATATCGA
1 AGACATGGTCTTACACGA-ATCACATATCGA
73409679 AAATCCTATG
Statistics
Matches: 157, Mismatches: 21, Indels: 28
0.76 0.10 0.14
Matches are distributed among these distances:
34 20 0.13
35 1 0.01
37 4 0.03
38 3 0.02
39 3 0.02
40 4 0.03
41 29 0.18
42 18 0.11
43 75 0.48
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (42 bp):
AGACATGGTCTTACACGAATCACATATCGATGCCAATGTCCC
Found at i:73409659 original size:77 final size:77
Alignment explanation
Indices: 73409532--73409688 Score: 260
Period size: 77 Copynumber: 2.0 Consensus size: 77
73409522 TGTCCCAGAC
* * * *
73409532 ATGGTCTTTCACGTAATCACATATCGATGTCAATGTCCCAGACGTGGTCTTACACGAGAACACAT
1 ATGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGACATGGTCTTACACGAGAACACAT
*
73409597 ATTGAAAATCCT
66 ATCGAAAATCCT
*
73409609 ATGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGACATGGTCTTACAGGAGAACACAT
1 ATGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGACATGGTCTTACACGAGAACACAT
73409674 ATCGAAAATCCT
66 ATCGAAAATCCT
73409686 ATG
1 ATG
73409689 TCATGACATA
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
77 74 1.00
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.26
Consensus pattern (77 bp):
ATGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGACATGGTCTTACACGAGAACACAT
ATCGAAAATCCT
Found at i:73410822 original size:14 final size:15
Alignment explanation
Indices: 73410805--73410833 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
73410795 ACACGAAAAT
73410805 TTCACACAT-ATAAA
1 TTCACACATAATAAA
73410819 TTCACACATAATAAA
1 TTCACACATAATAAA
73410834 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:73417063 original size:40 final size:39
Alignment explanation
Indices: 73416965--73417227 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
73416955 TCCTCGTTCA
* * * *
73416965 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
73417004 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
73417043 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
73417083 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
73417123 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
73417163 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
73417204 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
73417228 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:73417187 original size:120 final size:119
Alignment explanation
Indices: 73416965--73417227 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
73416955 TCCTCGTTCA
* * *
73416965 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
73417030 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
73417083 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
73417148 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
73417204 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
73417228 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:73417236 original size:41 final size:41
Alignment explanation
Indices: 73417159--73417236 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
73417149 TTTGTATCTC
* * *
73417159 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
73417200 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
73417237 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:73424959 original size:40 final size:40
Alignment explanation
Indices: 73424911--73425178 Score: 491
Period size: 40 Copynumber: 6.7 Consensus size: 40
73424901 GCAAACACAT
* *
73424911 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
73424951 TTACCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
73424991 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
73425031 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
73425071 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
73425111 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
73425151 TTGCCTTCGGGTCATAACCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
73425179 TCCAATGTTC
Statistics
Matches: 222, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 222 1.00
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:73430033 original size:38 final size:38
Alignment explanation
Indices: 73429987--73430065 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
73429977 GTTTTAAAGA
73429987 TTGATTTTTATATTATGAATCTTTCTTTTCGCGGATTG
1 TTGATTTTTATATTATGAATCTTTCTTTTCGCGGATTG
*
73430025 TTGATTTTTATATTATGAATCTTTCTTTTCGTGGATTG
1 TTGATTTTTATATTATGAATCTTTCTTTTCGCGGATTG
73430063 TTG
1 TTG
73430066 CCTTGACTAG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.18, C:0.09, G:0.16, T:0.57
Consensus pattern (38 bp):
TTGATTTTTATATTATGAATCTTTCTTTTCGCGGATTG
Found at i:73430476 original size:24 final size:24
Alignment explanation
Indices: 73430444--73430493 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
73430434 CTAGTTTTGG
73430444 TTTTGCTTC-AGCAAGCTATGTTGC
1 TTTTGCTTCGA-CAAGCTATGTTGC
* *
73430468 TTTTTCTTCGACAAGCTTTGTTGC
1 TTTTGCTTCGACAAGCTATGTTGC
73430492 TT
1 TT
73430494 CTAAATAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 22 0.96
25 1 0.04
ACGTcount: A:0.14, C:0.20, G:0.18, T:0.48
Consensus pattern (24 bp):
TTTTGCTTCGACAAGCTATGTTGC
Found at i:73452154 original size:28 final size:30
Alignment explanation
Indices: 73452097--73452177 Score: 96
Period size: 29 Copynumber: 2.8 Consensus size: 30
73452087 GAGGTAAAAC
* *
73452097 TGTAAAATTCTAGAAAA-TAGTGGCAGAA-T
1 TGTAAAA-TCTGGAAAACCAGTGGCAGAATT
73452126 TGTAAAATCTGGAAAACCAGTGGCA-AATT
1 TGTAAAATCTGGAAAACCAGTGGCAGAATT
* *
73452155 TGTAAAATATGAAAAACCAGTGG
1 TGTAAAATCTGGAAAACCAGTGG
73452178 TCATTGATGG
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
28 10 0.22
29 36 0.78
ACGTcount: A:0.44, C:0.10, G:0.21, T:0.25
Consensus pattern (30 bp):
TGTAAAATCTGGAAAACCAGTGGCAGAATT
Found at i:73452321 original size:28 final size:28
Alignment explanation
Indices: 73452290--73452370 Score: 81
Period size: 28 Copynumber: 2.9 Consensus size: 28
73452280 GAAAGGTTTG
* * *
73452290 GGTAAAATTGTAAAATCTTGAAAGTTGA
1 GGTAAAATTGTAAAATCTAGAAAATAGA
* *
73452318 GGTAAAACTGTAAAATTCTAGAAAATAGT
1 GGTAAAATTGTAAAA-TCTAGAAAATAGA
* * *
73452347 GGCAGAATTGTAAAATCTGGAAAA
1 GGTAAAATTGTAAAATCTAGAAAA
73452371 CCAGTGGCAA
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
28 22 0.51
29 21 0.49
ACGTcount: A:0.46, C:0.06, G:0.21, T:0.27
Consensus pattern (28 bp):
GGTAAAATTGTAAAATCTAGAAAATAGA
Found at i:73452356 original size:229 final size:230
Alignment explanation
Indices: 73451944--73452639 Score: 1241
Period size: 229 Copynumber: 3.0 Consensus size: 230
73451934 CATTAATTTA
*
73451944 GTCATTCATGGATTCTAGCATGTCATATATCATTAGGGACCTAATTGCATACTTTAAGTTACTAA
1 GTCATTGATGGATTCTAGCATGTCATATATCATTAGGGACCTAATTGCATACTTTAAGTTAC--A
73452009 GAATAATTTGGAATCTATTTATGGACTAAACTAATCAACACAGAAAGGTTTGGGTAAAGTTGTAA
64 -AATAATTTGGAATCTATTTATGGACTAAACTAATCAACACAGAAAGGTTTGGGTAAAGTTGTAA
73452074 AATCTTGAAAGTTGAGGTAAAACTGTAAAATTCTAGAAAATAGTGGCAGAATTGTAAAATCTGGA
128 AATCTTGAAAGTTGAGGTAAAACTGTAAAATTCTAGAAAATAGTGGCAGAATTGTAAAATCTGGA
73452139 AAACCAGTGGCAAATTTGTAAAATATGAAAAACCAGTG
193 AAACCAGTGGCAAATTTGTAAAATATGAAAAACCAGTG
*
73452177 GTCATTGATGGATTCTAGCATGTCATATATCATTAGGGACCTAATTGCATACTTCAAGTTAC-AA
1 GTCATTGATGGATTCTAGCATGTCATATATCATTAGGGACCTAATTGCATACTTTAAGTTACAAA
* * * * *
73452241 TAATTTAGAATCTATTCAGGGACTAAACTAATCAAAACAGAAAGGTTTGGGTAAAATTGTAAAAT
66 TAATTTGGAATCTATTTATGGACTAAACTAATCAACACAGAAAGGTTTGGGTAAAGTTGTAAAAT
73452306 CTTGAAAGTTGAGGTAAAACTGTAAAATTCTAGAAAATAGTGGCAGAATTGTAAAATCTGGAAAA
131 CTTGAAAGTTGAGGTAAAACTGTAAAATTCTAGAAAATAGTGGCAGAATTGTAAAATCTGGAAAA
73452371 CCAGTGGCAAATTTGTAAAATATGAAAAACCAGTG
196 CCAGTGGCAAATTTGTAAAATATGAAAAACCAGTG
73452406 GTCATTGATGGATTCTAGCATGTCATATATCATTAGGGACCTAATTGCATACTTTAAGTTACTAA
1 GTCATTGATGGATTCTAGCATGTCATATATCATTAGGGACCTAATTGCATACTTTAAGTTAC--A
73452471 GAATAATTTGGAATCTATTTATGGACTAAACTAATCAACACAGAAAGGTTTGGGTAAAGTTGTAA
64 -AATAATTTGGAATCTATTTATGGACTAAACTAATCAACACAGAAAGGTTTGGGTAAAGTTGTAA
* * *
73452536 AATCTTGAAAGTTGAGGTAAAACTGTAAAGTTCTGGAAAATAGTGGCAGAATTGTAAAATCTAGA
128 AATCTTGAAAGTTGAGGTAAAACTGTAAAATTCTAGAAAATAGTGGCAGAATTGTAAAATCTGGA
73452601 AAACCAGTGGCAAATTTGTAAAATATGAAAAACCAGTG
193 AAACCAGTGGCAAATTTGTAAAATATGAAAAACCAGTG
73452639 G
1 G
73452640 CGAAACTAAA
Statistics
Matches: 443, Mismatches: 16, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
229 223 0.50
233 220 0.50
ACGTcount: A:0.40, C:0.11, G:0.19, T:0.30
Consensus pattern (230 bp):
GTCATTGATGGATTCTAGCATGTCATATATCATTAGGGACCTAATTGCATACTTTAAGTTACAAA
TAATTTGGAATCTATTTATGGACTAAACTAATCAACACAGAAAGGTTTGGGTAAAGTTGTAAAAT
CTTGAAAGTTGAGGTAAAACTGTAAAATTCTAGAAAATAGTGGCAGAATTGTAAAATCTGGAAAA
CCAGTGGCAAATTTGTAAAATATGAAAAACCAGTG
Found at i:73452383 original size:28 final size:30
Alignment explanation
Indices: 73452326--73452406 Score: 96
Period size: 29 Copynumber: 2.8 Consensus size: 30
73452316 GAGGTAAAAC
* *
73452326 TGTAAAATTCTAGAAAA-TAGTGGCAGAA-T
1 TGTAAAA-TCTGGAAAACCAGTGGCAGAATT
73452355 TGTAAAATCTGGAAAACCAGTGGCA-AATT
1 TGTAAAATCTGGAAAACCAGTGGCAGAATT
* *
73452384 TGTAAAATATGAAAAACCAGTGG
1 TGTAAAATCTGGAAAACCAGTGG
73452407 TCATTGATGG
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
28 10 0.22
29 36 0.78
ACGTcount: A:0.44, C:0.10, G:0.21, T:0.25
Consensus pattern (30 bp):
TGTAAAATCTGGAAAACCAGTGGCAGAATT
Found at i:73452616 original size:28 final size:30
Alignment explanation
Indices: 73452577--73452640 Score: 89
Period size: 29 Copynumber: 2.2 Consensus size: 30
73452567 TCTGGAAAAT
*
73452577 AGTGGCAGAA-TTGTAAAATCT-AGAAAACC
1 AGTGGCAGAATTTGTAAAATATGA-AAAACC
73452606 AGTGGCA-AATTTGTAAAATATGAAAAACC
1 AGTGGCAGAATTTGTAAAATATGAAAAACC
73452635 AGTGGC
1 AGTGGC
73452641 GAAACTAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
28 2 0.06
29 29 0.91
30 1 0.03
ACGTcount: A:0.44, C:0.12, G:0.22, T:0.22
Consensus pattern (30 bp):
AGTGGCAGAATTTGTAAAATATGAAAAACC
Found at i:73456336 original size:40 final size:40
Alignment explanation
Indices: 73456281--73456361 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
73456271 TTGTTAGATA
73456281 AACAATATTTGTAAAGTGATTTTGGTTGAAAATGTCAAAT
1 AACAATATTTGTAAAGTGATTTTGGTTGAAAATGTCAAAT
73456321 AACAATATTTGTAAAGTGATTTTGGTTGAAAATGTCAAAT
1 AACAATATTTGTAAAGTGATTTTGGTTGAAAATGTCAAAT
73456361 A
1 A
73456362 GGGATTTATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.41, C:0.05, G:0.17, T:0.37
Consensus pattern (40 bp):
AACAATATTTGTAAAGTGATTTTGGTTGAAAATGTCAAAT
Found at i:73458616 original size:28 final size:28
Alignment explanation
Indices: 73458580--73458640 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 28
73458570 CTGATCATGT
*
73458580 AGATAGGACCTTAACTTGCTATCTAAGA
1 AGATAGGACCTTAACCTGCTATCTAAGA
* * *
73458608 AGATCGGACCTTGACCTGCTATCTAGGA
1 AGATAGGACCTTAACCTGCTATCTAAGA
73458636 AGATA
1 AGATA
73458641 CGAACCAAAG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (28 bp):
AGATAGGACCTTAACCTGCTATCTAAGA
Found at i:73461527 original size:20 final size:20
Alignment explanation
Indices: 73461504--73461546 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
73461494 GCTCACATGC
73461504 TTTTTCTATCTCAATCTCTT
1 TTTTTCTATCTCAATCTCTT
* * *
73461524 TTTTTCTCTTTCATTCTCTT
1 TTTTTCTATCTCAATCTCTT
73461544 TTT
1 TTT
73461547 CTTTTTCGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.09, C:0.23, G:0.00, T:0.67
Consensus pattern (20 bp):
TTTTTCTATCTCAATCTCTT
Found at i:73465460 original size:43 final size:43
Alignment explanation
Indices: 73465413--73465515 Score: 138
Period size: 43 Copynumber: 2.4 Consensus size: 43
73465403 TATCGAGATG
*
73465413 TGATTACAGGTAAGACCATGTCTAGGACATTGGCATTG-TATT
1 TGATTACAGGTAAGACCATGTCTAGGACATTGGCATCGTTATT
*
73465455 ATGATTAC-GTGTAAGACCATGTCTAGGACGTTGGCATCGTTATT
1 -TGATTACAG-GTAAGACCATGTCTAGGACATTGGCATCGTTATT
* *
73465499 TGATTTCATGTAAGACC
1 TGATTACAGGTAAGACC
73465516 TTGCTTGGGA
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
42 1 0.02
43 48 0.91
44 4 0.08
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (43 bp):
TGATTACAGGTAAGACCATGTCTAGGACATTGGCATCGTTATT
Found at i:73477627 original size:40 final size:38
Alignment explanation
Indices: 73477563--73477842 Score: 321
Period size: 40 Copynumber: 7.0 Consensus size: 38
73477553 CCGGAATTTA
*
73477563 ACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAG
1 ACCGGA-ATAG-TACTCGCACAAATGCCTTCGGGACTTAG
* *
73477603 ACCGGATATAGTAGTTCGCACAAATGCCTTCGAGACTTAG
1 ACCGGA-ATAGTA-CTCGCACAAATGCCTTCGGGACTTAG
*
73477643 CCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTA-
1 ACCGGA-ATAGT-ACTCGCACAAATGCCTTCGGGACTTAG
73477682 ACCCGGAAATAGTAACTCGCACAAATGCCTTCGGGACTTAG
1 A-CCGG-AATAGT-ACTCGCACAAATGCCTTCGGGACTTAG
* *
73477723 CCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAG
1 ACCGGAA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAG
*
73477763 -CCTGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAG
1 ACC-GGAA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAG
* *
73477803 TCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAG
1 ACCGGAA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAG
73477843 CCCCGTTATC
Statistics
Matches: 222, Mismatches: 10, Indels: 16
0.90 0.04 0.06
Matches are distributed among these distances:
39 6 0.03
40 212 0.95
41 4 0.02
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (38 bp):
ACCGGAATAGTACTCGCACAAATGCCTTCGGGACTTAG
Found at i:73477702 original size:80 final size:80
Alignment explanation
Indices: 73477583--73477841 Score: 378
Period size: 80 Copynumber: 3.2 Consensus size: 80
73477573 GCTACTCGCT
* ** *
73477583 CAAATGCCTTCGGGACTTAGA-CCGGATATAGTAGTTCGCACAAATGCCTTCGAGACTTAGCCCG
1 CAAATGCCTTCGGGACTTA-ACCCGGAAATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
* *
73477647 G-ATATAGTAACTCGCA
65 GAAT-TAGTCACTAGCA
73477663 CAAATGCCTTCGGGACTTAACCCGGAAATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCGGAAATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
73477728 AATTAGTCACTAGCA
66 AATTAGTCACTAGCA
* * * * * *
73477743 CAAATGCCTTCGGGACTTAGCCTGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGTCCGG
1 CAAATGCCTTCGGGACTTAACCCGGAAATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
73477808 AATTAGTCACTAGCA
66 AATTAGTCACTAGCA
73477823 CAAATGCCTTCGGGACTTA
1 CAAATGCCTTCGGGACTTA
73477842 GCCCCGTTAT
Statistics
Matches: 165, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
79 1 0.01
80 162 0.98
81 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAACCCGGAAATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTCACTAGCA
Found at i:73477784 original size:120 final size:118
Alignment explanation
Indices: 73477560--73477845 Score: 371
Period size: 120 Copynumber: 2.4 Consensus size: 118
73477550 CCTCCGGAAT
* * * * *
73477560 TTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGACCGGATATAGTAGTTCGCACA
1 TTAACCGGAAATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTAGCACA
*
73477625 AATGCCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
65 AATGCCTTCGAGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
73477679 TTAACCCGGAAATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTCA-CTAGC
1 TTAA-CCGGAAATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGT-AGCTAGC
* * *
73477742 ACAAATGCCTTCGGGACTTAGCCTGGA-ATTAGTCACTAGCACAAATGCCTTCGGGAC
62 ACAAATGCCTTCGAGACTTAGCCCGGATA-TAGTAACTAGCACAAATGCCTTCGGGAC
* * *
73477799 TTAGTCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCC
1 TTA-ACCGGAAATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCC
73477846 CGTTATCATC
Statistics
Matches: 148, Mismatches: 13, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
119 7 0.05
120 140 0.95
121 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.24
Consensus pattern (118 bp):
TTAACCGGAAATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTAGCACAA
ATGCCTTCGAGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
Found at i:73484776 original size:21 final size:21
Alignment explanation
Indices: 73484750--73484800 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
73484740 ATTGTTGAGA
*
73484750 AGGAAGTTGTTGCT-ACAAAAG
1 AGGAAGTTGTTGATGA-AAAAG
73484771 AGGAAGTTGTTGATGAAAAAG
1 AGGAAGTTGTTGATGAAAAAG
*
73484792 AAGAAGTTG
1 AGGAAGTTG
73484801 CTGAAAAAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 26 0.96
22 1 0.04
ACGTcount: A:0.41, C:0.04, G:0.31, T:0.24
Consensus pattern (21 bp):
AGGAAGTTGTTGATGAAAAAG
Found at i:73487278 original size:81 final size:81
Alignment explanation
Indices: 73487034--73487988 Score: 1557
Period size: 81 Copynumber: 11.8 Consensus size: 81
73487024 CTCGAATGAT
* * *
73487034 ATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCT
1 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCAACTATATCCGGGCTAAGTCCCGAAGGCT
*
73487098 TTTGTGCTAAGCGACTAT
64 TTTGTGCTAAGCGACTAC
* * *
73487116 ATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCT
1 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCAACTATATCCGGGCTAAGTCCCGAAGGCT
73487180 TTTGTGCTAAGCGACTAC
64 TTTGTGCTAAGCGACTAC
73487198 ATCCGGACTAAGATCCGAAGGCATTTGTGCTAGCAACTATATCCGGGCTAAGTCCCGAAGGCTTT
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCTAGCAACTATATCCGGGCTAAGTCCCGAAGGCTTT
73487263 TGTGCTAAGCGACTAC
66 TGTGCTAAGCGACTAC
73487279 ATCCGGACTAAGATCCGAAGGCATTTGTGCTAGCAACTATATCCGGGCTAAGTCCCGAAGGCTTT
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCTAGCAACTATATCCGGGCTAAGTCCCGAAGGCTTT
73487344 TGTGCTAAGCGACTAC
66 TGTGCTAAGCGACTAC
73487360 ATCCGGACTAAGATCCGAAGGCATTTGTGCTAGCAACTATATCCGGGCTAAGTCCCGAAGGCTTT
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCTAGCAACTATATCCGGGCTAAGTCCCGAAGGCTTT
73487425 TGTGCTAAGCGACTAC
66 TGTGCTAAGCGACTAC
73487441 ATCCGGACTAAGATCCGAAGGCATTTGTGCTAGCAACTATATCCGGGCTAAGTCCCGAAGGCTTT
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCTAGCAACTATATCCGGGCTAAGTCCCGAAGGCTTT
73487506 TGTGCTAAGCGACTAC
66 TGTGCTAAGCGACTAC
73487522 ATCCGGACTAAGATCCGAAGGCATTTGTGCTAGCAACTATATCCGGGCTAAGTCCCGAAGGCTTT
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCTAGCAACTATATCCGGGCTAAGTCCCGAAGGCTTT
73487587 TGTGCTAAGCGACTAC
66 TGTGCTAAGCGACTAC
73487603 ATCCGGACTAAGATCCGAAGGCATTTGTGCTAGCAACTATATCCGGGCTAAGTCCCGAAGGCTTT
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCTAGCAACTATATCCGGGCTAAGTCCCGAAGGCTTT
73487668 TGTGCTAAGCGACTAC
66 TGTGCTAAGCGACTAC
73487684 ATCCGGACTAAGATCCGAAGGCATTTGTGCTAGCAACTATATCCGGGCTAAGTCCCGAAGGCTTT
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCTAGCAACTATATCCGGGCTAAGTCCCGAAGGCTTT
73487749 TGTGCTAAGCGACTAC
66 TGTGCTAAGCGACTAC
73487765 ATCCGGACTAAGATCCGAAGGCATTTGTGCTA-CGAA-TGATATCCGGGCTAAGTCCCGAAGGCT
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCTAGC-AACT-ATATCCGGGCTAAGTCCCGAAGGCT
*
73487828 TTTGTGCTAAGCGACTAT
64 TTTGTGCTAAGCGACTAC
* * * * *
73487846 ATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAAGCGACTACATCCGGACTAAGAT-CCGAAGGC
1 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCAACTATATCCGGGCTAAG-TCCCGAAGGC
* * *
73487909 ATTTGTGCT-AGCAACTAT
63 TTTTGTGCTAAGCGACTAC
* * ** * * *
73487927 ATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACCATATCCGGGTTAAGACCCGAAGGC
1 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCAACTATATCCGGGCTAAGTCCCGAAGGC
73487989 CTTGTGCGAG
Statistics
Matches: 844, Mismatches: 20, Indels: 20
0.95 0.02 0.02
Matches are distributed among these distances:
80 27 0.03
81 675 0.80
82 138 0.16
83 4 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (81 bp):
ATCCGGACTAAGATCCGAAGGCATTTGTGCTAGCAACTATATCCGGGCTAAGTCCCGAAGGCTTT
TGTGCTAAGCGACTAC
Found at i:73491959 original size:41 final size:39
Alignment explanation
Indices: 73491845--73491961 Score: 103
Period size: 41 Copynumber: 2.9 Consensus size: 39
73491835 TATAATAGTT
* *
73491845 CACCGGCATAAAGCCTGCTAGGCCT-AAGCTTG-TATCACA
1 CACCGGCAT-AAGCCTGCTAGG-CTAAAGCCTGATTTCACA
* * * * *
73491884 CACCGGCTTAAGGCCTGCTAGACTCAAAGTCTGATTTTATA
1 CACCGGCATAA-GCCTGCTAGGCT-AAAGCCTGATTTCACA
73491925 CACCGGCAATAAGCCTGCTAGGCATAAAGCCTGATTT
1 CACCGGC-ATAAGCCTGCTAGGC-TAAAGCCTGATTT
73491962 AATTCACCAG
Statistics
Matches: 62, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
38 4 0.06
39 17 0.27
40 5 0.08
41 32 0.52
42 4 0.06
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CACCGGCATAAGCCTGCTAGGCTAAAGCCTGATTTCACA
Found at i:73500283 original size:49 final size:46
Alignment explanation
Indices: 73500163--73500339 Score: 151
Period size: 47 Copynumber: 3.7 Consensus size: 46
73500153 GGTATAATGC
** ** *
73500163 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
1 CGATGCCATGT-CCAGACATGGTCTTACACTAACTCATAAATCAAGG
73500210 CGATGCCATGTTCCAGACATGGTCTTACACTAACT-ATAGAAATCAAGG
1 CGATGCCATG-TCCAGACATGGTCTTACACTAACTCAT--AAATCAAGG
* * ** *
73500258 CTGATGCCATGTCCAACACATGGTCTTACACTAGCTC-TCACATATTCGTGC
1 C-GATGCCATGTCC-AGACATGGTCTTACACTAACTCAT-A-A-A-TCAAGG
73500309 CGATGCCATGTCCCAGACATGGTCTTACACT
1 CGATGCCATGT-CCAGACATGGTCTTACACT
73500340 GACACATCTC
Statistics
Matches: 108, Mismatches: 12, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
46 2 0.02
47 31 0.29
48 12 0.11
49 30 0.28
50 27 0.25
51 6 0.06
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (46 bp):
CGATGCCATGTCCAGACATGGTCTTACACTAACTCATAAATCAAGG
Found at i:73500393 original size:46 final size:44
Alignment explanation
Indices: 73500307--73500521 Score: 182
Period size: 46 Copynumber: 4.7 Consensus size: 44
73500297 ACATATTCGT
73500307 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGCA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACACATCTCG-AG
* *
73500353 GCCGATGCATGTCCCAGACATATCTTACACTGGCTTACATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGAC--ACATCTCGAG
* * * * *
73500399 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACT-G-ACACATCTCGAG
** * * * * *
73500445 GTTGATGCCATGTCCCATACATGGTCTTACACTAGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACT-G-ACACAT-CTCGAG
73500493 GCCGATGCATGTCCCAGACATGTCTTACA
1 GCCGATGCATGTCCCAGACATGTCTTACA
73500522 ATAGCACACA
Statistics
Matches: 142, Mismatches: 19, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
44 11 0.08
45 15 0.11
46 64 0.45
47 27 0.19
48 24 0.17
49 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGACACATCTCGAG
Found at i:73500474 original size:94 final size:96
Alignment explanation
Indices: 73500164--73500526 Score: 317
Period size: 94 Copynumber: 3.9 Consensus size: 96
73500154 GTATAATGCC
* * * * *
73500164 GATGCCATGTCCCAGACATGGTCTTACACT-G-GCTCATCCATC-AAGTCGATGCCATGTTCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAC-TCGAGGCCGATGCCATGTCCCAG
* * * **
73500226 ACATGGTCTTACACTAACTATAGAAATCAAGGCT
65 ACATGGTCTTACACTAGCTCTCG-TCTCAA-GCT
* * * *
73500260 GATGCCATGTCCAACACATGGTCTTACACTAGCTCTCACATATTCG-TGCCGATGCCATGTCCCA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCT--CATACTCGAGGCCGATGCCATGTCCCA
* * *
73500324 GACATGGTCTTACACT-GACACATC-TCGC-AGCC
64 GACATGGTCTTACACTAG-CTC-TCGTCTCAAGCT
* *
73500356 GATG-CATGTCCCAGACAT-ATCTTACACTGGCT-TACAT-CTCGAGGCCGATG-CATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATACTCGAGGCCGATGCCATGTCCCAG
*
73500416 ACAT-GTCTTACACTAGCTCTCGTCTCAATGTT
65 ACATGGTCTTACACTAGCTCTCGTCTCAA-GCT
* * *
73500448 GATGCCATGTCCCATACATGGTCTTACACTAGCTCTCATAAT-GTGGCCGATG-CATGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATACTCGAGGCCGATGCCATGTCCCAGA
*
73500511 CAT-GTCTTACAATAGC
66 CATGGTCTTACACTAGC
73500527 ACACAAATAA
Statistics
Matches: 219, Mismatches: 32, Indels: 34
0.77 0.11 0.12
Matches are distributed among these distances:
89 2 0.01
90 15 0.07
91 19 0.09
92 16 0.07
93 14 0.06
94 62 0.28
95 14 0.06
96 34 0.16
97 2 0.01
98 3 0.01
99 34 0.16
100 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (96 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATACTCGAGGCCGATGCCATGTCCCAGA
CATGGTCTTACACTAGCTCTCGTCTCAAGCT
Found at i:73505648 original size:46 final size:44
Alignment explanation
Indices: 73505598--73505770 Score: 172
Period size: 46 Copynumber: 3.8 Consensus size: 44
73505588 TGGTTGAGCA
73505598 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATG-GAATG
* * * *
73505644 TCCGAACTTGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGGAA-T--G
*
73505689 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATTGATGGAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-TGATGG-AATG
* *
73505737 -CCTGAGCTCGTTGAATTGAGTCCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
73505771 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 57 0.54
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (44 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGGAATG
Found at i:73505756 original size:93 final size:93
Alignment explanation
Indices: 73505595--73505765 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
73505585 GGATGGTTGA
* * *
73505595 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAAT
73505660 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
73505688 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATTGATG-GAAACG-CCTGAGCTCGTTGA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-AACGTCC-GAACTCGTTGA
73505751 ATTGAGTCCGAGTTC
64 ATTGAGTCCGAGTTC
73505766 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
92 3 0.04
93 68 0.96
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAAT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:73512761 original size:46 final size:45
Alignment explanation
Indices: 73512711--73512882 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 45
73512701 GGTTGAGCAT
73512711 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGA
* * *
73512757 CCGAACTCGTTGAGTTGAGTCTGAGTTCA-TGA--GATGTAACTAGGCA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G-A
* * * * *
73512803 TTCGAACTCGTTGACTTGAGTCTGAGTTCACTTATGGATGTGAAAGC
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGA
*
73512850 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
73512883 GAGGCGGGTT
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 58 0.56
47 27 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.30
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATGA
Found at i:73512876 original size:93 final size:93
Alignment explanation
Indices: 73512707--73512878 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
73512697 GGATGGTTGA
* *
73512707 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGACCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGACTTGAGTCCGAGTTCACTTATGGATGCGAAAGACCGAACTCGTTGAGT
*
73512772 TGAGTCTGAGTTCATGAGATGTAACTAG
66 TGAGTCCGAGTTCATGAGATGTAACTAG
* * * * *
73512800 GCATTCGAACTCGTTGACTTGAGTCTGAGTTCACTTATGGATGTGAAAGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGACTTGAGTCCGAGTTCACTTATGGATGCGAAAGACCGAACTCGTTGAGT
73512865 TGAGTCCGAGTTCA
66 TGAGTCCGAGTTCA
73512879 CTTAGAGGCG
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGACTTGAGTCCGAGTTCACTTATGGATGCGAAAGACCGAACTCGTTGAGT
TGAGTCCGAGTTCATGAGATGTAACTAG
Found at i:73514626 original size:234 final size:234
Alignment explanation
Indices: 73514217--73514683 Score: 871
Period size: 234 Copynumber: 2.0 Consensus size: 234
73514207 TTTAATAATT
*
73514217 CAAAACTTCTCCTTGATCCATTCTGAATTTGCTTAGCTTCCATCAATTCACCAAGCTCTTCAATC
1 CAAAACTTCTCCTTGATCCATTCTCAATTTGCTTAGCTTCCATCAATTCACCAAGCTCTTCAATC
* *
73514282 ATTTCTGCTTCAATTAACTCAAATGAGTCTACATCATCATTAGAATTATTATGATAAAATTCTGC
66 ATTTCTGCTTCAATTAACTCAAATGAGTCTACATCATCATAAGAATTATTATGATAAAATTCTAC
73514347 AAATTCTTCTTGAACTATTGTGTTAACAATCTAAACAACGTGACATTCTTCATTTGTATCAGTAC
131 AAATTCTTCTTGAACTATTGTGTTAACAATCTAAACAACGTGACATTCTTCATTTGTATCAGTAC
*
73514412 ACTTCATAGCATCGAAAACATTAAAGGTTATCTGCTTAC
196 ACTTCATAGCATCGAAAACATTAAAGGTTATCTACTTAC
*
73514451 CAAAACTTCTCCTTGATCCATTCTCAATTTGCTTAGCTTCCATCAATTCACCATGCTCTTCAATC
1 CAAAACTTCTCCTTGATCCATTCTCAATTTGCTTAGCTTCCATCAATTCACCAAGCTCTTCAATC
*
73514516 ATTTCTGCTTCAATTAACTCAAATGAGTCTACATCATCATAAGAATTATTGTGATAAAATTCTAC
66 ATTTCTGCTTCAATTAACTCAAATGAGTCTACATCATCATAAGAATTATTATGATAAAATTCTAC
*
73514581 AAATTCTTCTTGAACTATTGTGTTAACAATCTCAACAACGTGACATTCTTCATTTGTATCAGTAC
131 AAATTCTTCTTGAACTATTGTGTTAACAATCTAAACAACGTGACATTCTTCATTTGTATCAGTAC
73514646 ACTTCATAGCATCGAAAACATTAAAGGTTATCTACTTA
196 ACTTCATAGCATCGAAAACATTAAAGGTTATCTACTTA
73514684 TCATTAACTC
Statistics
Matches: 226, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
234 226 1.00
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.36
Consensus pattern (234 bp):
CAAAACTTCTCCTTGATCCATTCTCAATTTGCTTAGCTTCCATCAATTCACCAAGCTCTTCAATC
ATTTCTGCTTCAATTAACTCAAATGAGTCTACATCATCATAAGAATTATTATGATAAAATTCTAC
AAATTCTTCTTGAACTATTGTGTTAACAATCTAAACAACGTGACATTCTTCATTTGTATCAGTAC
ACTTCATAGCATCGAAAACATTAAAGGTTATCTACTTAC
Found at i:73516509 original size:22 final size:22
Alignment explanation
Indices: 73516462--73516517 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
73516452 TTAATATTAC
**
73516462 ATATATATTTTATAGTTGTTAT
1 ATATATATTTTATAGTTCCTAT
*
73516484 ATATATATTATTATTGTTCCTA-
1 ATATATATT-TTATAGTTCCTAT
*
73516506 ATATATCTTTTA
1 ATATATATTTTA
73516518 GGTATACATA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 17 0.59
23 9 0.31
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.57
Consensus pattern (22 bp):
ATATATATTTTATAGTTCCTAT
Found at i:73516605 original size:24 final size:24
Alignment explanation
Indices: 73516578--73516623 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
73516568 TACCTCTATA
73516578 TTTATTATTAATATTAATATATGT
1 TTTATTATTAATATTAATATATGT
73516602 TTTATTATTAATATTAATATAT
1 TTTATTATTAATATTAATATAT
73516624 ATACGTATAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (24 bp):
TTTATTATTAATATTAATATATGT
Found at i:73519898 original size:34 final size:34
Alignment explanation
Indices: 73519846--73519928 Score: 136
Period size: 34 Copynumber: 2.5 Consensus size: 34
73519836 TGACCAAATT
73519846 TCACTTG-C-AACA-TAACCAATTCATACATTGC
1 TCACTTGACTAACATTAACCAATTCATACATTGC
73519877 TCACTTGACTAACATTAACCAATTCATACATTGC
1 TCACTTGACTAACATTAACCAATTCATACATTGC
*
73519911 TCACCTGACTAACATTAA
1 TCACTTGACTAACATTAA
73519929 TCATTTTTCA
Statistics
Matches: 48, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
31 7 0.15
32 1 0.02
33 4 0.08
34 36 0.75
ACGTcount: A:0.36, C:0.28, G:0.06, T:0.30
Consensus pattern (34 bp):
TCACTTGACTAACATTAACCAATTCATACATTGC
Found at i:73521735 original size:48 final size:50
Alignment explanation
Indices: 73521557--73521739 Score: 156
Period size: 51 Copynumber: 3.7 Consensus size: 50
73521547 ATCTATTGTG
* * * **
73521557 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCATACCT-GATAACTT
1 AGGTCACATGCGTAGTACTAAGTGCAGGCTACTACGTGTA-CTAGATAA-TT
* * * * * **
73521608 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGTTT
1 AGGTCACATGCGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAATT
* * * *
73521658 AGGTCACGTGCGTATTACTAAGTGTAGGCTACTACGTGT-CTGGATAATT
1 AGGTCACATGCGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAATT
* **
73521707 -GGTCGCATGTTTAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGCGTAGTACTAAGTGCAGGCTACTA
73521740 TACGTACTAG
Statistics
Matches: 108, Mismatches: 23, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
48 27 0.25
49 6 0.06
50 37 0.34
51 38 0.35
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (50 bp):
AGGTCACATGCGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAATT
Found at i:73540691 original size:24 final size:24
Alignment explanation
Indices: 73540640--73540783 Score: 218
Period size: 24 Copynumber: 6.0 Consensus size: 24
73540630 GCTTTATCAT
*
73540640 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
73540665 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
73540689 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
73540713 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
73540737 GTAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
73540761 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
73540784 GCACTTCCTC
Statistics
Matches: 110, Mismatches: 8, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
24 98 0.89
25 12 0.11
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:73540860 original size:20 final size:20
Alignment explanation
Indices: 73540835--73540899 Score: 112
Period size: 20 Copynumber: 3.2 Consensus size: 20
73540825 ATGAATACAC
73540835 CATGTGCATATCATACATAT
1 CATGTGCATATCATACATAT
*
73540855 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAT
*
73540875 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAT
73540895 CATGT
1 CATGT
73540900 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.34
Consensus pattern (20 bp):
CATGTGCATATCATACATAT
Found at i:73540866 original size:11 final size:11
Alignment explanation
Indices: 73540835--73540888 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
73540825 ATGAATACAC
73540835 CATGTGCATAT
1 CATGTGCATAT
*
73540846 CA--TACATAT
1 CATGTGCATAT
73540855 CATGTGCATAT
1 CATGTGCATAT
* *
73540866 CA--TACATGT
1 CATGTGCATAT
73540875 CATGTGCATAT
1 CATGTGCATAT
73540886 CAT
1 CAT
73540889 ACATACCATG
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.45
11 18 0.55
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.35
Consensus pattern (11 bp):
CATGTGCATAT
Found at i:73543231 original size:15 final size:15
Alignment explanation
Indices: 73543198--73543241 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
73543188 TTTTCCCTAT
* *
73543198 ATAATAATAATTATA
1 ATAATAATAATTTTC
73543213 ATAATAATAATTTTC
1 ATAATAATAATTTTC
73543228 ATAA-AA-AATTTTC
1 ATAATAATAATTTTC
73543241 A
1 A
73543242 AACATACTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
13 8 0.30
14 2 0.07
15 17 0.63
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (15 bp):
ATAATAATAATTTTC
Found at i:73543292 original size:19 final size:18
Alignment explanation
Indices: 73543255--73543298 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
73543245 ATACTTACAG
73543255 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
73543272 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
73543291 TACTAATT
1 TAATAATT
73543299 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:73544985 original size:47 final size:48
Alignment explanation
Indices: 73544870--73544994 Score: 180
Period size: 48 Copynumber: 2.6 Consensus size: 48
73544860 ATATCTGTAA
** *
73544870 GTGCTAAGTGGATATACCACAATTACACATATTGATACATGTAATGTG
1 GTGCTAAGTGGATATACCACGGTTACACATATTGATACATGTAACGTG
* * *
73544918 GTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT-TAACGTG
1 GTGCTAAGTGGATATACCACGGTTACACATATTGATACATGTAACGTG
*
73544965 GTGCTAAGTGGATATACCACGGTTAAACAT
1 GTGCTAAGTGGATATACCACGGTTACACAT
73544995 GTAACGTGGT
Statistics
Matches: 68, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
47 33 0.49
48 35 0.51
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (48 bp):
GTGCTAAGTGGATATACCACGGTTACACATATTGATACATGTAACGTG
Found at i:73545009 original size:38 final size:38
Alignment explanation
Indices: 73544958--73545034 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
73544948 ATTGATTCAT
73544958 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
* *
73544996 TAACGTGGTGCTAAGTGGATATGCCACGGTTATACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
73545034 T
1 T
73545035 TAATTTGAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
Found at i:73548491 original size:47 final size:47
Alignment explanation
Indices: 73548425--73548789 Score: 721
Period size: 47 Copynumber: 7.7 Consensus size: 47
73548415 GAAATGATAG
73548425 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
73548472 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
73548519 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
73548566 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
73548613 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
73548660 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
73548707 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
73548754 TAAGGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGA-AAGT
73548790 CCCGAAGGGC
Statistics
Matches: 317, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
47 313 0.99
48 4 0.01
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:73550392 original size:40 final size:40
Alignment explanation
Indices: 73550149--73550380 Score: 338
Period size: 40 Copynumber: 5.8 Consensus size: 40
73550139 GAGAATTGAG
*
73550149 AGTGATGTATCCGGGCTAAGTCCCGAAGAGTATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
73550189 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCTTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
73550229 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
73550269 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * ** *
73550309 AGTGATATATCCGTGCTAAACCCCAAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
73550349 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
73550381 ATCATGCTGG
Statistics
Matches: 171, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 171 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:73553109 original size:69 final size:70
Alignment explanation
Indices: 73552977--73553109 Score: 214
Period size: 69 Copynumber: 1.9 Consensus size: 70
73552967 TAGTTTATTA
* * * * *
73552977 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
73553042 CTTAG
66 CTTAG
73553047 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
73553110 GTTATGTACT
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
69 35 0.60
70 23 0.40
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:73554491 original size:47 final size:47
Alignment explanation
Indices: 73554437--73554886 Score: 828
Period size: 47 Copynumber: 9.6 Consensus size: 47
73554427 TATTTGAATA
*
73554437 AATGTGAAAGTTTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
73554484 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
73554531 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
73554578 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
73554625 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
73554672 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
73554719 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
73554766 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
73554813 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
73554860 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
73554887 TCCCGAAGAG
Statistics
Matches: 394, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 394 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:73556612 original size:495 final size:495
Alignment explanation
Indices: 73555682--73556835 Score: 2267
Period size: 495 Copynumber: 2.3 Consensus size: 495
73555672 AAATGGCATC
73555682 TTTTGAATGTGTACTTATAGAAGTTTAAATTGTATCCCTGACTGTCTTTAGTACTTATCTAAAGG
1 TTTTGAATGTGTACTTATAGAAGTTTAAATTGTATCCCTGACTGTCTTTAGTACTTATCTAAAGG
73555747 AATGTTCAAAAAAAAAATTTTACTGTTCTGATATGAGTTTCAAGACTGGTAATGCCCCTTTATCT
66 AATGTTCAAAAAAAAAATTTTACTGTTCTGATATGAGTTTCAAGACTGGTAATGCCCCTTTATCT
73555812 ATTCCGGCGACGGATACGAGATTGGGGTGTTACATTTTATTGGTATCAGAGCTACGGTTTAGTCG
131 ATTCCGGCGACGGATACGAGATTGGGGTGTTACATTTTATTGGTATCAGAGCTACGGTTTAGTCG
73555877 ATTCTAGGACTAACGTAGCACGCGTGAGTCTATTTATACATGCCATAAAGTGATAAAATGATAGT
196 ATTCTAGGACTAACGTAGCACGCGTGAGTCTATTTATACATGCCATAAAGTGATAAAATGATAGT
73555942 GTGATGATTTTTGACTATTAAAATGTGTTTTCTGTAACGTAATGAATCTTGATCCCGACCGAGCT
261 GTGATGATTTTTGACTATTAAAATGTGTTTTCTGTAACGTAATGAATCTTGATCCCGACCGAGCT
73556007 GTAGCAAGCTTCTGACTATGAGAATTTGCGATATAACTTCTCTTAGATATGCCTGAATTATTAAG
326 GTAGCAAGCTTCTGACTATGAGAATTTGCGATATAACTTCTCTTAGATATGCCTGAATTATTAAG
73556072 TTGATCAGGTGCGTATCATGTACTCGTATTTGAATTTCGATTTGGATTGAATTATAAGGGTATAA
391 TTGATCAGGTGCGTATCATGTACTCGTATTTGAATTTCGATTTGGATTGAATTATAAGGGTATAA
73556137 GTGATGCAATTTTGAAGGAGTGTTATGACTATAAATGTGA
456 GTGATGCAATTTTGAAGGAGTGTTATGACTATAAATGTGA
73556177 TTTTGAATGTGTACTTATAGAAGTTTAAATTGTATCCCTGACTGTCTTTAGTACTTATCTAAAGG
1 TTTTGAATGTGTACTTATAGAAGTTTAAATTGTATCCCTGACTGTCTTTAGTACTTATCTAAAGG
73556242 AATGTTCAAAAAAAAAATTTTACTGTTCTGATATGAGTTTCAAGACTGGTAATGCCCCTTTATCT
66 AATGTTCAAAAAAAAAATTTTACTGTTCTGATATGAGTTTCAAGACTGGTAATGCCCCTTTATCT
73556307 ATTCCGGCGACGGATACGAGATTGGGGTGTTACATTTTATTGGTATCAGAGCTACGGTTTAGTCG
131 ATTCCGGCGACGGATACGAGATTGGGGTGTTACATTTTATTGGTATCAGAGCTACGGTTTAGTCG
73556372 ATTCTAGGACTAACGTAGCACGCGTGAGTCTATTTATACATGCCATAAAGTGATAAAATGATAGT
196 ATTCTAGGACTAACGTAGCACGCGTGAGTCTATTTATACATGCCATAAAGTGATAAAATGATAGT
73556437 GTGATGATTTTTGACTATTAAAATGTGTTTTCTGTAACGTAATGAATCTTGATCCCGACCGAGCT
261 GTGATGATTTTTGACTATTAAAATGTGTTTTCTGTAACGTAATGAATCTTGATCCCGACCGAGCT
73556502 GTAGCAAGCTTCTGACTATGAGAATTTGCGATATAACTTCTCTTAGATATGCCTGAATTATTAAG
326 GTAGCAAGCTTCTGACTATGAGAATTTGCGATATAACTTCTCTTAGATATGCCTGAATTATTAAG
73556567 TTGATCAGGTGCGTATCATGTACTCGTATTTGAATTTCGATTTGGATTGAATTATAAGGGTATAA
391 TTGATCAGGTGCGTATCATGTACTCGTATTTGAATTTCGATTTGGATTGAATTATAAGGGTATAA
73556632 GTGATGCAATTTTGAAGGAGTGTTATGACTATAAATGTGA
456 GTGATGCAATTTTGAAGGAGTGTTATGACTATAAATGTGA
73556672 TTTTGAATGTGTACTTATAGAAGTTTAAATTGTATCCCTGACTGTCTTTAGTACTTATCTAAAGG
1 TTTTGAATGTGTACTTATAGAAGTTTAAATTGTATCCCTGACTGTCTTTAGTACTTATCTAAAGG
73556737 AATGTTC-AAAAAAAAA-TTTACTGTTCTGATATGAGTTTCAAGACTGGTAATGCCCCTTTATCT
66 AATGTTCAAAAAAAAAATTTTACTGTTCTGATATGAGTTTCAAGACTGGTAATGCCCCTTTATCT
* * *
73556800 ATTTCGGTGACGGATACGGGATTGGGGTGTTACATT
131 ATTCCGGCGACGGATACGAGATTGGGGTGTTACATT
73556836 GTTAGTATGA
Statistics
Matches: 656, Mismatches: 3, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
493 80 0.12
494 9 0.01
495 567 0.86
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.37
Consensus pattern (495 bp):
TTTTGAATGTGTACTTATAGAAGTTTAAATTGTATCCCTGACTGTCTTTAGTACTTATCTAAAGG
AATGTTCAAAAAAAAAATTTTACTGTTCTGATATGAGTTTCAAGACTGGTAATGCCCCTTTATCT
ATTCCGGCGACGGATACGAGATTGGGGTGTTACATTTTATTGGTATCAGAGCTACGGTTTAGTCG
ATTCTAGGACTAACGTAGCACGCGTGAGTCTATTTATACATGCCATAAAGTGATAAAATGATAGT
GTGATGATTTTTGACTATTAAAATGTGTTTTCTGTAACGTAATGAATCTTGATCCCGACCGAGCT
GTAGCAAGCTTCTGACTATGAGAATTTGCGATATAACTTCTCTTAGATATGCCTGAATTATTAAG
TTGATCAGGTGCGTATCATGTACTCGTATTTGAATTTCGATTTGGATTGAATTATAAGGGTATAA
GTGATGCAATTTTGAAGGAGTGTTATGACTATAAATGTGA
Found at i:73561568 original size:34 final size:35
Alignment explanation
Indices: 73561524--73561591 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 35
73561514 TATGGTACTA
*
73561524 AATTGGGCTAAGGCCCACACTGTTACTGCTACTGT
1 AATTGGGCTAAGGCCCACACTGATACTGCTACTGT
* *
73561559 AATT-GGCTAAGGCCCACATTGATATTGCTACTG
1 AATTGGGCTAAGGCCCACACTGATACTGCTACTG
73561592 ATATGGGCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 26 0.87
35 4 0.13
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (35 bp):
AATTGGGCTAAGGCCCACACTGATACTGCTACTGT
Found at i:73561608 original size:34 final size:34
Alignment explanation
Indices: 73561527--73561613 Score: 97
Period size: 34 Copynumber: 2.6 Consensus size: 34
73561517 GGTACTAAAT
*
73561527 TGGGCTAAGGCCCACACTGTTACTGCTACTGTAA
1 TGGGCTAAGGCCCACACTGATACTGCTACTGTAA
* * *
73561561 TTGGCTAAGGCCCACATTGATATTGCTACTG-ATA
1 TGGGCTAAGGCCCACACTGATACTGCTACTGTA-A
*
73561595 TGGGCTTAA-GCCCAGACTG
1 TGGGC-TAAGGCCCACACTG
73561614 TTTAGCACTG
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
33 1 0.02
34 40 0.91
35 3 0.07
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (34 bp):
TGGGCTAAGGCCCACACTGATACTGCTACTGTAA
Found at i:73564277 original size:39 final size:39
Alignment explanation
Indices: 73564218--73564439 Score: 167
Period size: 41 Copynumber: 5.6 Consensus size: 39
73564208 AATCAAGCAT
* * ** * *
73564218 CTTCGGGT-TTTAGCCGGATATAACCACTCGCACAAGGC
1 CTTCGGGTCTTAACCCGGATATAGTCACTAGCACAATGC
* *
73564256 CTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAACCCGGATATAGTCACTAGCA-CAATGC
* *
73564296 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGTCTTAACCCGGATATAGTCACTAGCAC-AATGC
* ** * ** *
73564336 CTTCGGATCTTAGTCCGGATGTAGTTGCTTAGCACAAAAGC
1 CTTCGGGTCTTAACCCGGATATAGTCAC-TAGCAC-AATGC
* ** * *
73564377 CTTCGGGACTTCGCCCGGATATAGTCGCTTAGCACAAAAGC
1 CTTCGGGTCTTAACCCGGATATAGTCAC-TAGCAC-AATGC
* *
73564418 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAACCCGGATAT
73564440 CATTCGAGTA
Statistics
Matches: 154, Mismatches: 26, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
38 8 0.05
39 18 0.12
40 61 0.40
41 67 0.44
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (39 bp):
CTTCGGGTCTTAACCCGGATATAGTCACTAGCACAATGC
Found at i:73564381 original size:41 final size:41
Alignment explanation
Indices: 73564254--73564439 Score: 234
Period size: 41 Copynumber: 4.6 Consensus size: 41
73564244 CTCGCACAAG
* * * * * *
73564254 GCCTTCGGGTCTTAACCCGGATATGGTCAC-TAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
* *
73564294 GCCTTCGGGACTTAGCCCGGATATAGTCAC-TAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
* * *
73564334 GCCTTC-GGATCTTAGTCCGGATGTAGTTGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
73564375 GCCTTCGGGACTTCGCCCGGATATAGTCGCTTAGCACAAAA
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
73564416 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
73564440 CATTCGAGTA
Statistics
Matches: 129, Mismatches: 14, Indels: 5
0.87 0.09 0.03
Matches are distributed among these distances:
39 3 0.02
40 58 0.45
41 65 0.50
42 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.25
Consensus pattern (41 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
Found at i:73564393 original size:81 final size:82
Alignment explanation
Indices: 73564284--73564437 Score: 231
Period size: 81 Copynumber: 1.9 Consensus size: 82
73564274 ATATGGTCAC
* * *
73564284 TAGCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCAC-TAGCACAAATGCCTTC-GGATCTT
1 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCACTTAGCACAAAAGCCTTCGGGA-CTT
*
73564347 AGTCCGGATGTAGTTGCT
65 AGCCCGGATGTAGTTGCT
* *
73564365 TAGCACAAAAGCCTTCGGGACTTCGCCCGGATATAGTCGCTTAGCACAAAAGCCTTCGGGACTTA
1 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTA
73564430 GCCCGGAT
66 GCCCGGAT
73564438 ATCATTCGAG
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 36 0.55
82 26 0.40
83 3 0.05
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (82 bp):
TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTA
GCCCGGATGTAGTTGCT
Found at i:73566302 original size:42 final size:42
Alignment explanation
Indices: 73566246--73566353 Score: 112
Period size: 42 Copynumber: 2.6 Consensus size: 42
73566236 AATGCCAACA
* * * *
73566246 TCCCAAACATGGTCTTACATGTAATCAAATATC-ATGCC-ACTG
1 TCCCAGACAGGGTCTTACACGAAATCAAATA-CGATGCCTA-TG
*
73566288 TCCCAGACAGGGTCTTACACGAAATCATATACGATGCCTATG
1 TCCCAGACAGGGTCTTACACGAAATCAAATACGATGCCTATG
* * *
73566330 TCCCAGAAATGGTTTTACACGAAA
1 TCCCAGACAGGGTCTTACACGAAA
73566354 CCACATGTCG
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
41 1 0.02
42 54 0.96
43 1 0.02
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (42 bp):
TCCCAGACAGGGTCTTACACGAAATCAAATACGATGCCTATG
Found at i:73569331 original size:40 final size:40
Alignment explanation
Indices: 73569287--73569417 Score: 138
Period size: 40 Copynumber: 3.3 Consensus size: 40
73569277 GGGTGCCGAA
* * * *
73569287 GTGCAAATAAAGACACTAAAGTGTATTCAGTGGTACAGTT
1 GTGCAAACAAGGACACTAAAGTGTATTCAGAGGCACAGTT
* * * * *
73569327 GTGCAAACAGGGACACTAAACTGTATTAAGGGGCACAATT
1 GTGCAAACAAGGACACTAAAGTGTATTCAGAGGCACAGTT
** *
73569367 GTGCAAACAAGGACAC-CGAGTTGTATTCAGAGGCATAGTT
1 GTGCAAACAAGGACACTAAAG-TGTATTCAGAGGCACAGTT
73569407 GTGCAAACAAG
1 GTGCAAACAAG
73569418 AGCACTTCTT
Statistics
Matches: 74, Mismatches: 16, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.22
Consensus pattern (40 bp):
GTGCAAACAAGGACACTAAAGTGTATTCAGAGGCACAGTT
Found at i:73574832 original size:24 final size:25
Alignment explanation
Indices: 73574814--73574873 Score: 93
Period size: 25 Copynumber: 2.4 Consensus size: 25
73574804 AAAAACGCTA
*
73574814 TGCCCCAGTTTACCGAAAAGGGCTT
1 TGCCCCAGTTTACCAAAAAGGGCTT
* *
73574839 TGCCCCATTTTATCAAAAAGGGCTT
1 TGCCCCAGTTTACCAAAAAGGGCTT
73574864 TGCCCCAGTT
1 TGCCCCAGTT
73574874 ATTAAAAGAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (25 bp):
TGCCCCAGTTTACCAAAAAGGGCTT
Found at i:73574832 original size:25 final size:24
Alignment explanation
Indices: 73574803--73574873 Score: 79
Period size: 25 Copynumber: 2.9 Consensus size: 24
73574793 TGAGGAAGTG
* *
73574803 CAAAAACGCTATGCCCCAGTTTAC
1 CAAAAAGGCTTTGCCCCAGTTTAC
* * *
73574827 CGAAAAGGGCTTTGCCCCATTTTAT
1 C-AAAAAGGCTTTGCCCCAGTTTAC
73574852 CAAAAAGGGCTTTGCCCCAGTT
1 CAAAAA-GGCTTTGCCCCAGTT
73574874 ATTAAAAGAG
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
24 5 0.13
25 33 0.87
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (24 bp):
CAAAAAGGCTTTGCCCCAGTTTAC
Found at i:73574875 original size:24 final size:24
Alignment explanation
Indices: 73574814--73574880 Score: 80
Period size: 25 Copynumber: 2.7 Consensus size: 24
73574804 AAAAACGCTA
* *
73574814 TGCCCCAGTTTACCGAAAAGGGCTT
1 TGCCCCAG-TTATCAAAAAGGGCTT
*
73574839 TGCCCCATTTTATCAAAAAGGGCTT
1 TGCCCCA-GTTATCAAAAAGGGCTT
*
73574864 TGCCCCAGTTATTAAAA
1 TGCCCCAGTTATCAAAA
73574881 GAGGCTAGGC
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
24 8 0.22
25 28 0.78
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.28
Consensus pattern (24 bp):
TGCCCCAGTTATCAAAAAGGGCTT
Found at i:73574886 original size:24 final size:24
Alignment explanation
Indices: 73574814--73574900 Score: 70
Period size: 25 Copynumber: 3.5 Consensus size: 24
73574804 AAAAACGCTA
*
73574814 TGCCCCAGTTTACCGAAAAG-GGCTT
1 TGCCCCAG-TTATC-AAAAGAGGCTT
*
73574839 TGCCCCATTTTATCAAAA-AGGGCTT
1 TGCCCCA-GTTATCAAAAGA-GGCTT
* *
73574864 TGCCCCAGTTATTAAAAGAGGCTA
1 TGCCCCAGTTATCAAAAGAGGCTT
*
73574888 GGCCTCCAGTTAT
1 TGCC-CCAGTTAT
73574901 ATGATAAAGC
Statistics
Matches: 51, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
24 19 0.37
25 32 0.63
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (24 bp):
TGCCCCAGTTATCAAAAGAGGCTT
Found at i:73575703 original size:38 final size:38
Alignment explanation
Indices: 73575652--73575730 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
73575642 AGCCTTCATG
*
73575652 GCTCACCTCCTCTGTTTCGGATACCTACTTGGTGCACA
1 GCTCACCTCCTCTGTTTCGGATACCTACCTGGTGCACA
73575690 GCTCACCTCCTCTGTTTCGGATACCTACCTGGTGCACA
1 GCTCACCTCCTCTGTTTCGGATACCTACCTGGTGCACA
73575728 GCT
1 GCT
73575731 TCCATTCACT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.15, C:0.35, G:0.19, T:0.30
Consensus pattern (38 bp):
GCTCACCTCCTCTGTTTCGGATACCTACCTGGTGCACA
Found at i:73582770 original size:25 final size:25
Alignment explanation
Indices: 73582742--73582811 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
73582732 GAGGAAGTGC
* * *
73582742 AAAAGCGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
73582767 AAAAGGGCTTTGCCCCATTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
73582792 AAAAGGGCTTTACCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
73582812 ATTAAAAGAG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:73582813 original size:24 final size:25
Alignment explanation
Indices: 73582767--73582818 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
73582757 CAGTTTACCG
* *
73582767 AAAAGGGCTTTGCCCCATTTTATCA
1 AAAAGGGCTTTACCCCATGTTATCA
*
73582792 AAAAGGGCTTTACCCCA-GTTATTA
1 AAAAGGGCTTTACCCCATGTTATCA
73582816 AAA
1 AAA
73582819 GAGGCTAGGC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 8 0.33
25 16 0.67
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (25 bp):
AAAAGGGCTTTACCCCATGTTATCA
Found at i:73585412 original size:138 final size:138
Alignment explanation
Indices: 73585250--73585548 Score: 374
Period size: 138 Copynumber: 2.2 Consensus size: 138
73585240 TATGAGAGCT
**
73585250 AGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGACGAATGCTAGTGTAAGACATGTCTG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGTACGGAGACGAATGCTAGTGTAAGACATGTCTG
* * *
73585315 GGACATGCATCAG-TC-TCGGGATATAAGCCAATGTAAGA-CATGTTTGGGACATGG-ATCGGCT
66 GAACATGCATCAGCACATCGGG--A-AAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCT
73585376 ACGAGATGTGTC
128 -CGAGATGTGTC
* * * **
73585388 AGTGTAAGACCATGTTTGGGACATGGCATCGGTACGGATATGTGTGCTAGTGTAAGACATGTCTG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGTACGGAGACGAATGCTAGTGTAAGACATGTCTG
* * * *
73585453 GAACATGCATCAGCCACATCGTGAAAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTG
66 GAACATGCATCAG-CACATCGGGAAAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCTCG
* *
73585518 ATATGTGTT
130 AGATGTGTC
73585527 AGTGTAAGACC-TGTCTGGGACA
1 AGTGTAAGACCATGTCTGGGACA
73585549 CGGTATCGAC
Statistics
Matches: 139, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
138 92 0.66
139 35 0.25
140 8 0.06
141 4 0.03
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (138 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGTACGGAGACGAATGCTAGTGTAAGACATGTCTG
GAACATGCATCAGCACATCGGGAAAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCTCGA
GATGTGTC
Found at i:73585463 original size:46 final size:46
Alignment explanation
Indices: 73585247--73585513 Score: 202
Period size: 46 Copynumber: 5.7 Consensus size: 46
73585237 CATTATGAGA
** * *
73585247 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGACGAAT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGTACGGAGATGTAT
* * * *
73585295 GCTAGTGTAAGACATGTCTGGGACATGCATCAGTCTCGG-GATATAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGT-ACGGAGATGTAT
* * * * *
73585341 GCCAATGTAAGACATGTTTGGGACATGGATCGGCTAC-GAGATGTGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-TACGGAGATGTAT
* * *
73585387 -C-AGTGTAAGACCATGTTTGGGACATGGCATCGGTACGGATATGTGT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGTACGGAGATGTAT
* ** *** * *
73585433 GCTAGTGTAAGACATGTCTGGAACATGCATCAGCCACATCG-TGAAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATC-GGTACGGAGATGTAT
73585479 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGG
73585514 CTTGATATGT
Statistics
Matches: 175, Mismatches: 33, Indels: 23
0.76 0.14 0.10
Matches are distributed among these distances:
44 8 0.05
45 19 0.11
46 76 0.43
47 46 0.26
48 26 0.15
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGTACGGAGATGTAT
Found at i:73589736 original size:54 final size:54
Alignment explanation
Indices: 73589671--73589778 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
73589661 CAGGTAGGTA
73589671 TGGTGGCCTCCTTATACGCAATTTAAGGAGCCATAGCCTTAGTAAAGGAAATAG
1 TGGTGGCCTCCTTATACGCAATTTAAGGAGCCATAGCCTTAGTAAAGGAAATAG
*
73589725 TGGTGGTCTCCTTATACGCAATTTAAGGAGCCATAGCCTTAGTAAAGGAAATAG
1 TGGTGGCCTCCTTATACGCAATTTAAGGAGCCATAGCCTTAGTAAAGGAAATAG
73589779 CGGAGGCTTG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (54 bp):
TGGTGGCCTCCTTATACGCAATTTAAGGAGCCATAGCCTTAGTAAAGGAAATAG
Found at i:73593081 original size:46 final size:45
Alignment explanation
Indices: 73593027--73593201 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 45
73593017 TGTTTGGGCA
73593027 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
* *** * * *
73593072 GTCCAAACTCGTTGAGTTGA-TCCGAGTTCGAGAGATGTAACTGGGCA-
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-TGCGAAT
* * *
73593119 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGTGAACT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T
* *
73593165 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73593202 GTGGGTTACA
Statistics
Matches: 105, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
44 4 0.04
45 10 0.10
46 78 0.74
47 9 0.09
48 4 0.04
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
Found at i:73593178 original size:92 final size:93
Alignment explanation
Indices: 73593021--73593193 Score: 269
Period size: 92 Copynumber: 1.9 Consensus size: 93
73593011 CTAGGATGTT
*
73593021 TGGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTG
1 TGGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCAAACTCGTTG
73593086 AGTTGA-TCCGAGTTCGAGAGATGTAAC
66 AGTTGAGTCCGAGTTCGAGAGATGTAAC
* * * * *
73593113 TGGGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGTGAACT-CCCGAGCTCGTT
1 TGGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-TGCCCAAACTCGTT
73593177 GAGTTGAGTCCGAGTTC
65 GAGTTGAGTCCGAGTTC
73593194 ACTTATGGGT
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
92 63 0.86
93 10 0.14
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
TGGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCAAACTCGTTG
AGTTGAGTCCGAGTTCGAGAGATGTAAC
Found at i:73598199 original size:20 final size:20
Alignment explanation
Indices: 73598176--73598283 Score: 83
Period size: 20 Copynumber: 5.5 Consensus size: 20
73598166 GGTGAAGCCA
73598176 CCAGTAATGCAGATAAACTG
1 CCAGTAATGCAGATAAACTG
* * *
73598196 CCAGTAGTACAGAT-AACTA
1 CCAGTAATGCAGATAAACTG
* * * *
73598215 CCAATATTGTAGATAAAATG
1 CCAGTAATGCAGATAAACTG
* * * *
73598235 CCAGTAATGCAAACAAGCTT
1 CCAGTAATGCAGATAAACTG
* **
73598255 CCAGTATTGTTGATAAACTG
1 CCAGTAATGCAGATAAACTG
73598275 CCAGTAATG
1 CCAGTAATG
73598284 TGGTCAAGCC
Statistics
Matches: 62, Mismatches: 25, Indels: 2
0.70 0.28 0.02
Matches are distributed among these distances:
19 14 0.23
20 48 0.77
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.25
Consensus pattern (20 bp):
CCAGTAATGCAGATAAACTG
Found at i:73598299 original size:40 final size:40
Alignment explanation
Indices: 73598124--73598299 Score: 122
Period size: 40 Copynumber: 4.4 Consensus size: 40
73598114 ACTCAAATTC
* * * *
73598124 GTGGACAAGCCACTAGTAATGCAGATAAGCTGCTAGTAAT
1 GTGGTCAAGCCACCAGTAATGCAGATAAACTGCCAGTAAT
* *
73598164 GTGGTGAAGCCACCAGTAATGCAGATAAACTGCCAGTAGT
1 GTGGTCAAGCCACCAGTAATGCAGATAAACTGCCAGTAAT
** * * * * * *
73598204 ACAGAT-AA-CTACCAATATTGTAGATAAAATGCCAGTAAT
1 -GTGGTCAAGCCACCAGTAATGCAGATAAACTGCCAGTAAT
**** ** * **
73598243 GCAAACAAGCTTCCAGTATTGTTGATAAACTGCCAGTAAT
1 GTGGTCAAGCCACCAGTAATGCAGATAAACTGCCAGTAAT
73598283 GTGGTCAAGCCACCAGT
1 GTGGTCAAGCCACCAGT
73598300 GATGTGGATA
Statistics
Matches: 104, Mismatches: 29, Indels: 6
0.75 0.21 0.04
Matches are distributed among these distances:
38 1 0.01
39 27 0.26
40 74 0.71
41 2 0.02
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23
Consensus pattern (40 bp):
GTGGTCAAGCCACCAGTAATGCAGATAAACTGCCAGTAAT
Found at i:73600339 original size:44 final size:44
Alignment explanation
Indices: 73600276--73600396 Score: 145
Period size: 44 Copynumber: 2.7 Consensus size: 44
73600266 AGTACATGTA
73600276 TCGCATCCATAATGAACTCGAACCAACTCAACAAGCTCGGATGC
1 TCGCATCCATAATGAACTCGAACCAACTCAACAAGCTCGGATGC
* * * *
73600320 TCGCATCCATAATGAACTCGGACCAACTTAACGAGCTCTGATGC
1 TCGCATCCATAATGAACTCGAACCAACTCAACAAGCTCGGATGC
* * * *
73600364 -CTCATACATATCACGAACCCGAACCAACTCAAC
1 TCGCATCCATA--ATGAACTCGAACCAACTCAAC
73600397 GAGTTCAGAT
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
43 8 0.12
44 40 0.62
45 17 0.26
ACGTcount: A:0.34, C:0.33, G:0.14, T:0.19
Consensus pattern (44 bp):
TCGCATCCATAATGAACTCGAACCAACTCAACAAGCTCGGATGC
Found at i:73601314 original size:50 final size:50
Alignment explanation
Indices: 73601198--73601475 Score: 270
Period size: 50 Copynumber: 5.5 Consensus size: 50
73601188 CTAGTACGCA
* * * * * *
73601198 TAGTAGGCTGCACTTAGTACTACACATGCGACC-AACAATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGGTACACG
* *
73601247 TAGTAGCTTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGGTACACG
* * * *** * ** *
73601297 TAGTAGCCTGCACTTAGTAATACACACGTGATCAAAGTTGTCGGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CCATCTGGTACACG
* * *
73601348 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGGTACACG
* * *** *
73601398 TAGTAGCCTGCAATTAGTACTACACACGTGACTTAAAACCATCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACCATCTGGTACACG
*
73601450 TAGTAGCCTGCACATAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
73601476 TGTATGCTCA
Statistics
Matches: 183, Mismatches: 42, Indels: 5
0.80 0.18 0.02
Matches are distributed among these distances:
49 29 0.16
50 82 0.45
51 37 0.20
52 35 0.19
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGGTACACG
Found at i:73601372 original size:101 final size:101
Alignment explanation
Indices: 73601247--73601428 Score: 301
Period size: 101 Copynumber: 1.8 Consensus size: 101
73601237 CCGGTACATG
* * *
73601247 TAGTAGCTTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGATACACGTAGTAGCCTGCAATT
73601312 AGTAATACACACGTGATCAAAGTTGTCGGGTATGCA
66 AGTAATACACACGTGATCAAAGTTGTCGGGTATGCA
* * *
73601348 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCCTGCAATT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGATACACGTAGTAGCCTGCAATT
*
73601413 AGTACTACACACGTGA
66 AGTAATACACACGTGA
73601429 CTTAAAACCA
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
101 74 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGATACACGTAGTAGCCTGCAATT
AGTAATACACACGTGATCAAAGTTGTCGGGTATGCA
Found at i:73605929 original size:23 final size:23
Alignment explanation
Indices: 73605903--73605988 Score: 72
Period size: 23 Copynumber: 3.7 Consensus size: 23
73605893 GCTCTATTAG
*
73605903 GCTGAAACGGTAAGCTTCATCGA
1 GCTGAAACAGTAAGCTTCATCGA
*
73605926 GCTG-AACAGTAAGGC--CATACAA
1 GCTGAAACAGTAA-GCTTCAT-CGA
**
73605948 GCTGAAATGGTAAG-TTCAATCGA
1 GCTGAAACAGTAAGCTTC-ATCGA
73605971 GCTGAAAGCAGTAAGCTT
1 GCTGAAA-CAGTAAGCTT
73605989 TTCTAAGCTA
Statistics
Matches: 48, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
21 3 0.06
22 14 0.29
23 22 0.46
24 7 0.15
25 2 0.04
ACGTcount: A:0.35, C:0.19, G:0.26, T:0.21
Consensus pattern (23 bp):
GCTGAAACAGTAAGCTTCATCGA
Found at i:73607425 original size:15 final size:15
Alignment explanation
Indices: 73607405--73607434 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
73607395 GCTAAAAAAA
*
73607405 AGAAGAGAAATGGAG
1 AGAAGAGAAAGGGAG
73607420 AGAAGAGAAAGGGAG
1 AGAAGAGAAAGGGAG
73607435 GAGCTAGAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.53, C:0.00, G:0.43, T:0.03
Consensus pattern (15 bp):
AGAAGAGAAAGGGAG
Found at i:73610233 original size:44 final size:44
Alignment explanation
Indices: 73610183--73610275 Score: 168
Period size: 44 Copynumber: 2.1 Consensus size: 44
73610173 TATTATGACC
* *
73610183 TTACTAACGTCCCGTAGAAATTAAAATAATAATAAAATAAAAAT
1 TTACTAACATCCCATAGAAATTAAAATAATAATAAAATAAAAAT
73610227 TTACTAACATCCCATAGAAATTAAAATAATAATAAAATAAAAAT
1 TTACTAACATCCCATAGAAATTAAAATAATAATAAAATAAAAAT
73610271 TTACT
1 TTACT
73610276 CGTCAAATTT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.55, C:0.12, G:0.04, T:0.29
Consensus pattern (44 bp):
TTACTAACATCCCATAGAAATTAAAATAATAATAAAATAAAAAT
Found at i:73620713 original size:50 final size:53
Alignment explanation
Indices: 73620619--73620722 Score: 178
Period size: 50 Copynumber: 2.0 Consensus size: 53
73620609 TATTTGTTTT
73620619 ATTTTTTTCTTTAAAAAAAATATCTGTTGCACTGTTTTATTTTTATTTAAACAA
1 ATTTTTTTCTTTAAAAAAAATA-CTGTTGCACTGTTTTATTTTTATTTAAACAA
73620673 ATTTTTTTCTTT-AAAAAAA-A-TGTTGCACTGTTTTATTTTTATTTAAACAA
1 ATTTTTTTCTTTAAAAAAAATACTGTTGCACTGTTTTATTTTTATTTAAACAA
73620723 TACCAAGTTA
Statistics
Matches: 50, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
50 30 0.60
52 1 0.02
53 7 0.14
54 12 0.24
ACGTcount: A:0.34, C:0.09, G:0.06, T:0.52
Consensus pattern (53 bp):
ATTTTTTTCTTTAAAAAAAATACTGTTGCACTGTTTTATTTTTATTTAAACAA
Found at i:73625575 original size:38 final size:39
Alignment explanation
Indices: 73625491--73625646 Score: 164
Period size: 39 Copynumber: 4.1 Consensus size: 39
73625481 TTCCCTTTTT
* * *
73625491 TACTTTGGTACCCCT-A-GT-ACTTACATG-CCCTGTTC
1 TACTTTGGTACCCCTGATCTCACTTACGTGCCCCTGTTG
* *
73625526 TAGTTCT-GTACCCCTGATCTCACTTACGTG-CCTTGTTG
1 TACTT-TGGTACCCCTGATCTCACTTACGTGCCCCTGTTG
* * *
73625564 TATTTTGGTACCCCTGAT-TGCACTTACATGCCCCTGCTG
1 TACTTTGGTACCCCTGATCT-CACTTACGTGCCCCTGTTG
*
73625603 TACTTTGGTACCCCTGATCACACTTACGTGCCCCTGTTG
1 TACTTTGGTACCCCTGATCTCACTTACGTGCCCCTGTTG
73625642 TACTT
1 TACTT
73625647 CGATACTCCT
Statistics
Matches: 100, Mismatches: 13, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
35 12 0.12
36 2 0.02
37 3 0.03
38 38 0.38
39 45 0.45
ACGTcount: A:0.15, C:0.31, G:0.17, T:0.37
Consensus pattern (39 bp):
TACTTTGGTACCCCTGATCTCACTTACGTGCCCCTGTTG
Found at i:73625619 original size:39 final size:38
Alignment explanation
Indices: 73625491--73625665 Score: 153
Period size: 39 Copynumber: 4.6 Consensus size: 38
73625481 TTCCCTTTTT
* *
73625491 TACTTTGGTACCCCT-A--GTACTTACATGCCCTGTTC
1 TACTTTGGTACCCCTGATTGCACTTACATGCCCTGTTG
* * *
73625526 TAGTTCT-GTACCCCTGATCT-CACTTACGTGCCTTGTTG
1 TACTT-TGGTACCCCTGAT-TGCACTTACATGCCCTGTTG
* *
73625564 TATTTTGGTACCCCTGATTGCACTTACATGCCCCTGCTG
1 TACTTTGGTACCCCTGATTGCACTTACATG-CCCTGTTG
** *
73625603 TACTTTGGTACCCCTGATCACACTTACGTGCCCCTGTTG
1 TACTTTGGTACCCCTGATTGCACTTACATG-CCCTGTTG
* * * *
73625642 TACTTCGATACTCCTGATAGCACT
1 TACTTTGGTACCCCTGATTGCACT
73625666 CTTGTGCCAT
Statistics
Matches: 113, Mismatches: 19, Indels: 12
0.78 0.13 0.08
Matches are distributed among these distances:
35 12 0.11
36 2 0.02
37 2 0.02
38 38 0.34
39 59 0.52
ACGTcount: A:0.17, C:0.31, G:0.17, T:0.36
Consensus pattern (38 bp):
TACTTTGGTACCCCTGATTGCACTTACATGCCCTGTTG
Found at i:73629136 original size:47 final size:47
Alignment explanation
Indices: 73629069--73629236 Score: 222
Period size: 47 Copynumber: 3.6 Consensus size: 47
73629059 TCCATAAGTG
73629069 AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACA
1 AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACA
* * *
73629116 AACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCA-TCCATAA
1 AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACATTTCA-CA
73629159 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACA
1 ---AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACA
73629209 AACTCGGACTCAACTCAACGAGTTCGGA
1 AACTCGGACTCAACTCAACGAGTTCGGA
73629237 CATTCGCATC
Statistics
Matches: 104, Mismatches: 6, Indels: 22
0.79 0.05 0.17
Matches are distributed among these distances:
42 5 0.05
43 4 0.04
44 1 0.01
46 28 0.27
47 56 0.54
49 1 0.01
50 4 0.04
51 5 0.05
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.23
Consensus pattern (47 bp):
AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACA
Found at i:73629136 original size:93 final size:93
Alignment explanation
Indices: 73629023--73629285 Score: 508
Period size: 93 Copynumber: 2.8 Consensus size: 93
73629013 CCCATAAGTG
* *
73629023 AACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
73629088 GAGTTCGGATGCCTAGTTACATTTCACA
66 GAGTTCGGATGCCTAGTTACATTTCACA
73629116 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
73629181 GAGTTCGGATGCCTAGTTACATTTCACA
66 GAGTTCGGATGCCTAGTTACATTTCACA
73629209 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
73629274 GAGTTCGGATGC
66 GAGTTCGGATGC
73629286 TCAACCATCC
Statistics
Matches: 168, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 168 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTTCACA
Found at i:73629282 original size:46 final size:46
Alignment explanation
Indices: 73629014--73629282 Score: 288
Period size: 46 Copynumber: 5.8 Consensus size: 46
73629004 TGTAACCCGC
* *
73629014 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
73629060 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACATT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCA-T
* *
73629111 TCA-CA---AACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
73629153 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACATT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCA-T
* *
73629204 TCA-CA---AACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
73629246 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
73629283 TGCTCAACCA
Statistics
Matches: 187, Mismatches: 14, Indels: 44
0.76 0.06 0.18
Matches are distributed among these distances:
42 10 0.05
43 8 0.04
44 2 0.01
46 91 0.49
47 56 0.30
49 2 0.01
50 8 0.04
51 10 0.05
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:73631741 original size:26 final size:26
Alignment explanation
Indices: 73631705--73631760 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
73631695 TGAAGGGCAT
73631705 GGCCCTAGGACATGGCCGTGCGCCCA
1 GGCCCTAGGACATGGCCGTGCGCCCA
*
73631731 GGCCTTAGGACATGGCCGTGCGCCCA
1 GGCCCTAGGACATGGCCGTGCGCCCA
73631757 GGCC
1 GGCC
73631761 ATGTGAAGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.14, C:0.38, G:0.36, T:0.12
Consensus pattern (26 bp):
GGCCCTAGGACATGGCCGTGCGCCCA
Found at i:73632491 original size:16 final size:16
Alignment explanation
Indices: 73632470--73632500 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
73632460 GTAACGCCCC
73632470 AAAAATCCCAAAATCT
1 AAAAATCCCAAAATCT
*
73632486 AAAAATCCCGAAATC
1 AAAAATCCCAAAATC
73632501 CTGAATTTTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.26, G:0.03, T:0.16
Consensus pattern (16 bp):
AAAAATCCCAAAATCT
Found at i:73636684 original size:43 final size:43
Alignment explanation
Indices: 73636637--73636722 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
73636627 AAGAAGATAA
73636637 TATACTATCTTAGCATATTGTACAATAAGAGATAATAAACTCT
1 TATACTATCTTAGCATATTGTACAATAAGAGATAATAAACTCT
73636680 TATACTATCTTAGCATATTGTACAATAAGAGATAATAAACTCT
1 TATACTATCTTAGCATATTGTACAATAAGAGATAATAAACTCT
73636723 ATCTCCCACT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.42, C:0.14, G:0.09, T:0.35
Consensus pattern (43 bp):
TATACTATCTTAGCATATTGTACAATAAGAGATAATAAACTCT
Found at i:73641725 original size:50 final size:51
Alignment explanation
Indices: 73641659--73641802 Score: 173
Period size: 50 Copynumber: 2.8 Consensus size: 51
73641649 GTAACTGAAG
* *
73641659 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCT-AA
1 CTATCTCGTACACATAGTAGCCTGCACTTAGTACTACACATGCAACCTAAA
* **
73641709 CTATCTCGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAA
1 CTATCTCGTACACATAGTAGCCTGCACTTAGTACTACACATGCAACCT-AAA
* *** * *
73641761 CCATCTTAAACACATAGTAGCCTGCACATATTACTACACATG
1 CTATCTCGTACACATAGTAGCCTGCACTTAGTACTACACATG
73641803 TGTTCTCACA
Statistics
Matches: 80, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
50 43 0.54
52 37 0.46
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (51 bp):
CTATCTCGTACACATAGTAGCCTGCACTTAGTACTACACATGCAACCTAAA
Found at i:73643669 original size:28 final size:28
Alignment explanation
Indices: 73643593--73643716 Score: 131
Period size: 28 Copynumber: 4.4 Consensus size: 28
73643583 CGATATTTCG
** **
73643593 CACACTAAGTGCCATACCCAATGCCTCA
1 CACACTAAGTGCCATATTCAATATCTCA
* *
73643621 TACACTAAGTGCCATATTCAATGTCTCA
1 CACACTAAGTGCCATATTCAATATCTCA
* **
73643649 CACACTAAGTGCCATAATCAATATCTTT
1 CACACTAAGTGCCATATTCAATATCTCA
* **
73643677 CACACTAAGTGTCATATTCAATATCTTG
1 CACACTAAGTGCCATATTCAATATCTCA
*
73643705 CACACTATGTGC
1 CACACTAAGTGC
73643717 TATACGTAGC
Statistics
Matches: 82, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 82 1.00
ACGTcount: A:0.32, C:0.28, G:0.10, T:0.29
Consensus pattern (28 bp):
CACACTAAGTGCCATATTCAATATCTCA
Found at i:73645203 original size:22 final size:22
Alignment explanation
Indices: 73645178--73645221 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
73645168 TTTGTACTTA
73645178 AATT-ATTAAAATAATTAATTTT
1 AATTCATT-AAATAATTAATTTT
**
73645200 AATTCATTTTATAATTAATTTT
1 AATTCATTAAATAATTAATTTT
73645222 GATTTATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (22 bp):
AATTCATTAAATAATTAATTTT
Found at i:73645230 original size:22 final size:22
Alignment explanation
Indices: 73645188--73645231 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
73645178 AATTATTAAA
73645188 ATAATTAATTTTAATTCATTTT
1 ATAATTAATTTTAATTCATTTT
* *
73645210 ATAATTAATTTTGATTTATTTT
1 ATAATTAATTTTAATTCATTTT
73645232 GATTATTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (22 bp):
ATAATTAATTTTAATTCATTTT
Found at i:73650505 original size:27 final size:26
Alignment explanation
Indices: 73650447--73650515 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 26
73650437 GGTGGCTAAG
** *
73650447 CCACAAATATCTGTTCTGGTGGTTCTG
1 CCAC-AATATCTGTTCTGGTGACTCTA
73650474 CCACAATATCTGTATCTGGTGACTCTA
1 CCACAATATCTGT-TCTGGTGACTCTA
* *
73650501 TCACATTATCTGTTC
1 CCACAATATCTGTTC
73650516 AGGCCGCTCT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
26 11 0.31
27 25 0.69
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.38
Consensus pattern (26 bp):
CCACAATATCTGTTCTGGTGACTCTA
Found at i:73659609 original size:29 final size:30
Alignment explanation
Indices: 73659556--73659613 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
73659546 CAAAAGTTTT
73659556 GGCACTAAGTGTGCGATTTAAACTAGCTTG
1 GGCACTAAGTGTGCGATTTAAACTAGCTTG
73659586 GGCACTAAGTGTGCGATTT-AACTAGCTT
1 GGCACTAAGTGTGCGATTTAAACTAGCTT
73659614 CGGCTATTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 9 0.32
30 19 0.68
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (30 bp):
GGCACTAAGTGTGCGATTTAAACTAGCTTG
Found at i:73666218 original size:63 final size:63
Alignment explanation
Indices: 73666103--73666223 Score: 154
Period size: 63 Copynumber: 1.9 Consensus size: 63
73666093 TACATCCATT
* * * **
73666103 GAAATTGATGAACAAAAGGATAGAATGAAAGATTTTAGGTTTCGACTTATTGGAAGCTCCACC
1 GAAATTGAAGAACAAAAAGAAAGAATGAAAGATTTTAGGTTTCGACACATTGGAAGCTCCACC
* * *
73666166 GAAATTGAAGAACAAAAAGAAAGAAT-AAAGGCTTTTAGGTTTTGGCACATTGGAAGCT
1 GAAATTGAAGAACAAAAAGAAAGAATGAAA-GATTTTAGGTTTCGACACATTGGAAGCT
73666224 TAATTTGGGT
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
62 3 0.06
63 46 0.94
ACGTcount: A:0.40, C:0.11, G:0.23, T:0.26
Consensus pattern (63 bp):
GAAATTGAAGAACAAAAAGAAAGAATGAAAGATTTTAGGTTTCGACACATTGGAAGCTCCACC
Found at i:73667298 original size:28 final size:28
Alignment explanation
Indices: 73667266--73667321 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
73667256 ATGTTTTGAG
73667266 TACGAGCTTACTAAGCTTTTGAAAGCTT
1 TACGAGCTTACTAAGCTTTTGAAAGCTT
73667294 TACGAGCTTACTAAGCTTTTGAAAGCTT
1 TACGAGCTTACTAAGCTTTTGAAAGCTT
73667322 ACTCTGTGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.36
Consensus pattern (28 bp):
TACGAGCTTACTAAGCTTTTGAAAGCTT
Found at i:73668752 original size:18 final size:18
Alignment explanation
Indices: 73668727--73668764 Score: 69
Period size: 17 Copynumber: 2.2 Consensus size: 18
73668717 AATTCGTTTG
73668727 TTTATTTTTC-TTATTTA
1 TTTATTTTTCGTTATTTA
73668744 TTTATTTTTCGTTATTTA
1 TTTATTTTTCGTTATTTA
73668762 TTT
1 TTT
73668765 TTTATGTCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.16, C:0.05, G:0.03, T:0.76
Consensus pattern (18 bp):
TTTATTTTTCGTTATTTA
Found at i:73672023 original size:41 final size:41
Alignment explanation
Indices: 73671942--73672035 Score: 118
Period size: 41 Copynumber: 2.3 Consensus size: 41
73671932 TCATATGAGA
* * * *
73671942 GGTATCGATACCTTTGCTAACTGTATCGATGCATTGACTTG
1 GGTATCGATACCTCTGCCAACTGTATCGATACATTAACTTG
* *
73671983 GGTATCGATACCTCTGCCAA-TGGTGTTGATACATTAACTTG
1 GGTATCGATACCTCTGCCAACT-GTATCGATACATTAACTTG
73672024 GGTATCGATACC
1 GGTATCGATACC
73672036 CATGTCAAGT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 1 0.02
41 45 0.98
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.34
Consensus pattern (41 bp):
GGTATCGATACCTCTGCCAACTGTATCGATACATTAACTTG
Found at i:73673581 original size:3 final size:3
Alignment explanation
Indices: 73673573--73673602 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
73673563 TTCCTTTGTT
*
73673573 TTC TTC TTC TTC TTC TTC TTT TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
73673603 CTCCTCCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (3 bp):
TTC
Found at i:73675932 original size:47 final size:47
Alignment explanation
Indices: 73675837--73675966 Score: 152
Period size: 47 Copynumber: 2.8 Consensus size: 47
73675827 GTGTGAATAG
* * * *
73675837 TACCTTGATTTAGCTACGGGTCATGGTATAGGTATTTTGAAAGGAGT
1 TACCTTGATTTAGCTACGGGCCATGGTATAGGTACTCTGAAAGAAGT
* ** *
73675884 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCTGGGATAAGT
1 TACCTTGATTTAGCTACGGGCCATGGTATAGGTACTCTGAAAGAAGT
* ** *
73675931 TACCTTGATTTTGCTATTGGCCATGGAATAGGTACT
1 TACCTTGATTTAGCTACGGGCCATGGTATAGGTACT
73675967 TATCAATTAT
Statistics
Matches: 71, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.35
Consensus pattern (47 bp):
TACCTTGATTTAGCTACGGGCCATGGTATAGGTACTCTGAAAGAAGT
Found at i:73677130 original size:13 final size:13
Alignment explanation
Indices: 73677114--73677141 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
73677104 CAGCCTGTTT
73677114 ACACGGGCATGTG
1 ACACGGGCATGTG
73677127 ACACGGGCATGTG
1 ACACGGGCATGTG
73677140 AC
1 AC
73677142 CTATGATTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.25, G:0.36, T:0.14
Consensus pattern (13 bp):
ACACGGGCATGTG
Found at i:73680217 original size:40 final size:40
Alignment explanation
Indices: 73679778--73680203 Score: 651
Period size: 40 Copynumber: 10.7 Consensus size: 40
73679768 ATTCGGATTG
*
73679778 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
73679817 ATAACCAGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
73679856 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
73679896 ATAACCAGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
73679935 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * *
73679975 ATAATCGGGCCAAGTCCCGATGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
73680015 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
73680055 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * *
73680095 ATAATCGGGCCAAGTCCCGATGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
73680135 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
73680175 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
73680204 AGTGAGAAGC
Statistics
Matches: 347, Mismatches: 38, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
39 83 0.24
40 264 0.76
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:73682663 original size:17 final size:19
Alignment explanation
Indices: 73682621--73682664 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
73682611 ATGAAATTTT
*
73682621 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
73682640 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
73682658 AA-TATTA
1 AATTATTA
73682665 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:73689555 original size:8 final size:8
Alignment explanation
Indices: 73689542--73689582 Score: 55
Period size: 8 Copynumber: 5.1 Consensus size: 8
73689532 AACTGCTAAG
73689542 GCTGAAAA
1 GCTGAAAA
73689550 GCTGAAAA
1 GCTGAAAA
* *
73689558 GCAGAAAG
1 GCTGAAAA
73689566 GCTGAAAA
1 GCTGAAAA
*
73689574 GCCGAAAA
1 GCTGAAAA
73689582 G
1 G
73689583 TGGGTAGATG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.49, C:0.15, G:0.29, T:0.07
Consensus pattern (8 bp):
GCTGAAAA
Found at i:73689844 original size:27 final size:27
Alignment explanation
Indices: 73689813--73689873 Score: 113
Period size: 27 Copynumber: 2.3 Consensus size: 27
73689803 TCTAGGCTAA
73689813 ATGGGCCATATAGAGGTATAGGCCCAC
1 ATGGGCCATATAGAGGTATAGGCCCAC
*
73689840 ATGGGCCATATGGAGGTATAGGCCCAC
1 ATGGGCCATATAGAGGTATAGGCCCAC
73689867 ATGGGCC
1 ATGGGCC
73689874 CTTAATATGG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.26, C:0.23, G:0.33, T:0.18
Consensus pattern (27 bp):
ATGGGCCATATAGAGGTATAGGCCCAC
Found at i:73693563 original size:47 final size:47
Alignment explanation
Indices: 73693510--73693639 Score: 145
Period size: 47 Copynumber: 2.8 Consensus size: 47
73693500 GTACGAATAA
* * *
73693510 TACCTTGATTTGGCTACGGGCCATGGTATAGATA-TTTTGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGATACTCTAGA-AGAAGT
* * * *
73693557 TACCTTGATTTGGCTACGAGACATGGTATAGGTACTCTAGAATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGATACTCTAGAAGAAGT
* * * *
73693604 TACCTAGATTTAGCTACGGGCAATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGATACT
73693640 TATCGATTAT
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
47 66 0.94
48 4 0.06
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGATACTCTAGAAGAAGT
Found at i:73699373 original size:18 final size:19
Alignment explanation
Indices: 73699350--73699388 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
73699340 GGGATTTATT
73699350 TGTGAAAA-TGTGA-AAATG
1 TGTGAAAAGT-TGATAAATG
73699368 TGTGAAAAGTTGATAAATG
1 TGTGAAAAGTTGATAAATG
73699387 TG
1 TG
73699389 GGCTGCTAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.41, C:0.00, G:0.28, T:0.31
Consensus pattern (19 bp):
TGTGAAAAGTTGATAAATG
Found at i:73703035 original size:43 final size:43
Alignment explanation
Indices: 73702885--73703037 Score: 175
Period size: 43 Copynumber: 3.6 Consensus size: 43
73702875 TAATATGTGT
* *
73702885 TTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGTGA
1 TTACATGTAAGACCATGTCTGGGACATTGGCATCGTATAGTGA
** *
73702928 TTATGTGTAAGACTATGTCTGGGACATTGGCATCGTTATA-TGA
1 TTACATGTAAGACCATGTCTGGGACATTGGCATCG-TATAGTGA
* * *
73702971 TTTCGTGTAAGATCATGTCTGGGACATTGGCATCG-ATAAGTGA
1 TTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT-AGTGA
* * *
73703014 TAACATGTAGGACCATATCTGGGA
1 TTACATGTAAGACCATGTCTGGGA
73703038 TATAGCATTG
Statistics
Matches: 92, Mismatches: 15, Indels: 6
0.81 0.13 0.05
Matches are distributed among these distances:
41 2 0.02
42 1 0.01
43 86 0.93
44 3 0.03
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (43 bp):
TTACATGTAAGACCATGTCTGGGACATTGGCATCGTATAGTGA
Found at i:73725891 original size:45 final size:45
Alignment explanation
Indices: 73725840--73725930 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 45
73725830 TAATTAAAGT
* *
73725840 TAAAATTAATTGAAATAAAAGCCAAGTATCATCTTTTCTTCTTTC
1 TAAAATTAATTAAAATAAAAGCCAAGTATCACCTTTTCTTCTTTC
73725885 TAAAATTAATTAAAATAAAAGCCAAGTATCACCTTTTCTTCTTTC
1 TAAAATTAATTAAAATAAAAGCCAAGTATCACCTTTTCTTCTTTC
73725930 T
1 T
73725931 TCAACTGATT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.38, C:0.16, G:0.05, T:0.40
Consensus pattern (45 bp):
TAAAATTAATTAAAATAAAAGCCAAGTATCACCTTTTCTTCTTTC
Found at i:73726762 original size:25 final size:25
Alignment explanation
Indices: 73726711--73726770 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
73726701 CATCTCAAGA
*
73726711 GAGCTTACCAATATTTAGCTCACAT
1 GAGCTTACCAATATTCAGCTCACAT
* ***
73726736 GAGCTTACCGATATTCAGCTTGTAT
1 GAGCTTACCAATATTCAGCTCACAT
73726761 GAGCTTACCA
1 GAGCTTACCA
73726771 TTTATATCTC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (25 bp):
GAGCTTACCAATATTCAGCTCACAT
Done.