Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 223 of 322
Found at i:73731616 original size:89 final size:89
Alignment explanation
Indices: 73731500--73731673 Score: 303
Period size: 89 Copynumber: 2.0 Consensus size: 89
73731490 CACCCGGATA
* *
73731500 ATGACAAGAGGATCCTATGCATTCCTCTCCCTCTTGAGGAAGAAGTGGATAGAATGGTATAGTGA
1 ATGACAAGAGGATCCTATGCATTCCTCTCCCTATTGAGGAAGAAGTGGATAGAATGGTATAGTAA
73731565 GGAAAAGCTTCAGGGACTTAGATG
66 GGAAAAGCTTCAGGGACTTAGATG
* *
73731589 ATGACAAGAGGATTCTATGCATTCCTCTCCCTATTGAGGAAGAAGTGGATAGAATGGTATGGTAA
1 ATGACAAGAGGATCCTATGCATTCCTCTCCCTATTGAGGAAGAAGTGGATAGAATGGTATAGTAA
*
73731654 GGAGAAGCTTCAGGGACTTA
66 GGAAAAGCTTCAGGGACTTA
73731674 CATGGTGTGG
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
89 80 1.00
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.25
Consensus pattern (89 bp):
ATGACAAGAGGATCCTATGCATTCCTCTCCCTATTGAGGAAGAAGTGGATAGAATGGTATAGTAA
GGAAAAGCTTCAGGGACTTAGATG
Found at i:73733680 original size:21 final size:20
Alignment explanation
Indices: 73733648--73733694 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
73733638 ATATAAATAA
* *
73733648 ATTTAATATCAATTTAATTC
1 ATTTCATATCAATTTAACTC
73733668 ATTTCATACTCAATTTAACTC
1 ATTTCATA-TCAATTTAACTC
*
73733689 AATTCA
1 ATTTCA
73733695 CATCCTAGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.38, C:0.17, G:0.00, T:0.45
Consensus pattern (20 bp):
ATTTCATATCAATTTAACTC
Found at i:73735161 original size:18 final size:18
Alignment explanation
Indices: 73735133--73735169 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
73735123 TTAGGTTGCA
73735133 AGGTCTGTTGAAGAGGAGG
1 AGGTCTGTTGAAGA-GAGG
73735152 AGGT-TGTTGAAGAGAGG
1 AGGTCTGTTGAAGAGAGG
73735169 A
1 A
73735170 TGGTAAAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.28
18 9 0.50
19 4 0.22
ACGTcount: A:0.30, C:0.03, G:0.46, T:0.22
Consensus pattern (18 bp):
AGGTCTGTTGAAGAGAGG
Found at i:73735614 original size:16 final size:16
Alignment explanation
Indices: 73735593--73735658 Score: 96
Period size: 16 Copynumber: 4.1 Consensus size: 16
73735583 GGTTGGGGTG
**
73735593 AATGGAATAGGGCTGT
1 AATGGAATAAAGCTGT
*
73735609 AATGGAATAAAGATGT
1 AATGGAATAAAGCTGT
*
73735625 AATGGAATATAGCTGT
1 AATGGAATAAAGCTGT
73735641 AATGGAATAAAGCTGT
1 AATGGAATAAAGCTGT
73735657 AA
1 AA
73735659 CTAGTAATTC
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 44 1.00
ACGTcount: A:0.42, C:0.05, G:0.27, T:0.26
Consensus pattern (16 bp):
AATGGAATAAAGCTGT
Found at i:73735900 original size:59 final size:59
Alignment explanation
Indices: 73735837--73735983 Score: 217
Period size: 59 Copynumber: 2.5 Consensus size: 59
73735827 TTTTAATAAG
* *
73735837 ATTATTACTAAATATAATTTAATAAAAATAATTATATAATTTAATAATATT-TTAACATA
1 ATTATTATTAAATATAATTTAATAAAAATAA-TATATAATTTAATAACATTCTTAACATA
*
73735896 ATTATTATTAAATATAATTTAAT-AAAATAATATATAATTTAATAACATTCTTAATATA
1 ATTATTATTAAATATAATTTAATAAAAATAATATATAATTTAATAACATTCTTAACATA
* *
73735954 ATTATTTTTAAAATATAAATTAATAAAAAT
1 ATTATTATT-AAATATAATTTAATAAAAAT
73735984 CATAATATGT
Statistics
Matches: 80, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
57 18 0.22
58 22 0.28
59 35 0.44
60 5 0.06
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (59 bp):
ATTATTATTAAATATAATTTAATAAAAATAATATATAATTTAATAACATTCTTAACATA
Found at i:73740509 original size:6 final size:6
Alignment explanation
Indices: 73740498--73740523 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
73740488 TGCGGTGCAT
73740498 ATAGTC ATAGTC ATAGTC ATAGTC AT
1 ATAGTC ATAGTC ATAGTC ATAGTC AT
73740524 GGTACAGTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (6 bp):
ATAGTC
Found at i:73749724 original size:93 final size:92
Alignment explanation
Indices: 73749566--73749735 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 92
73749556 GGATGGTTGA
* * *
73749566 GCATCCGAACTCGTTGAGTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCATTGAGTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTT
73749631 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
*
73749658 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAG-TGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73749723 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
73749736 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 17 0.23
93 56 0.77
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCATTGAGTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:73749735 original size:46 final size:46
Alignment explanation
Indices: 73749570--73749740 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
73749560 GGTTGAGCAT
* *
73749570 CCGAACTCGTTGAG-TGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
73749615 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
*
73749660 ATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
73749708 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
73749741 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 11, Indels: 19
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 17 0.16
46 44 0.42
47 27 0.26
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:73753927 original size:46 final size:45
Alignment explanation
Indices: 73753870--73753995 Score: 148
Period size: 46 Copynumber: 2.8 Consensus size: 45
73753860 GGTGGTATGT
* * *
73753870 GAGCCACTGTAAGACTTGTCTGGGACATGCATCGGCCATATTATG-AA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CAT-TGA-GAAA
*
73753917 -AGCCAGTGTAAGACATGTCTGGGACATGCATTGGCATTGAGACAA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGA-AA
* *
73753962 GAGCTAGTGTAAGACATGTTTGGGACATGCATCG
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCG
73753996 ACCTTGGGAT
Statistics
Matches: 69, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
43 1 0.01
44 2 0.03
45 5 0.07
46 61 0.88
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.25
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGAAA
Found at i:73754160 original size:49 final size:49
Alignment explanation
Indices: 73754107--73754311 Score: 138
Period size: 49 Copynumber: 4.3 Consensus size: 49
73754097 AGATGAGAGC
73754107 CAGTGTAAGACCTGCCTCAGACATGGCATCGACTTCGACATATGAAAGT
1 CAGTGTAAGACCTGCCTCAGACATGGCATCGACTTCGACATATGAAAGT
* ** * ***
73754156 CAGTGTAAGACCTGTCTGGGACATGGCGTC-AGCTT----AT-TGTGTGT
1 CAGTGTAAGACCTGCCTCAGACATGGCATCGA-CTTCGACATATGAAAGT
** ** ** * ** * * * * *
73754200 CAGTGTACCA-CTAGTTTGGGACATGCCA-CTGACACCAATAGATGAGAGC
1 CAGTGTAAGACCT-GCCTCAGACATGGCATC-GACTTCGACATATGAAAGT
73754249 CAGTGTAAGACCTGCCTCAGACATGGCATCGACTTCGACATATGAAAGT
1 CAGTGTAAGACCTGCCTCAGACATGGCATCGACTTCGACATATGAAAGT
73754298 CAGTGTAAGACCTG
1 CAGTGTAAGACCTG
73754312 TCTGGGACAC
Statistics
Matches: 113, Mismatches: 32, Indels: 22
0.68 0.19 0.13
Matches are distributed among these distances:
43 3 0.03
44 25 0.22
45 3 0.03
48 2 0.02
49 77 0.68
50 3 0.03
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (49 bp):
CAGTGTAAGACCTGCCTCAGACATGGCATCGACTTCGACATATGAAAGT
Found at i:73754171 original size:142 final size:142
Alignment explanation
Indices: 73754017--73754320 Score: 590
Period size: 142 Copynumber: 2.1 Consensus size: 142
73754007 TACAAGCTAA
*
73754017 TGTAAGACCTGTCTGGGACATGGCGTCAGCTTATTGTGTGTCAGTGTAAGACTAGTTTGGGACAT
1 TGTAAGACCTGTCTGGGACATGGCGTCAGCTTATTGTGTGTCAGTGTAACACTAGTTTGGGACAT
73754082 GCCACTGACACCAATAGATGAGAGCCAGTGTAAGACCTGCCTCAGACATGGCATCGACTTCGACA
66 GCCACTGACACCAATAGATGAGAGCCAGTGTAAGACCTGCCTCAGACATGGCATCGACTTCGACA
73754147 TATGAAAGTCAG
131 TATGAAAGTCAG
*
73754159 TGTAAGACCTGTCTGGGACATGGCGTCAGCTTATTGTGTGTCAGTGTACCACTAGTTTGGGACAT
1 TGTAAGACCTGTCTGGGACATGGCGTCAGCTTATTGTGTGTCAGTGTAACACTAGTTTGGGACAT
73754224 GCCACTGACACCAATAGATGAGAGCCAGTGTAAGACCTGCCTCAGACATGGCATCGACTTCGACA
66 GCCACTGACACCAATAGATGAGAGCCAGTGTAAGACCTGCCTCAGACATGGCATCGACTTCGACA
73754289 TATGAAAGTCAG
131 TATGAAAGTCAG
73754301 TGTAAGACCTGTCTGGGACA
1 TGTAAGACCTGTCTGGGACA
73754321 CGGTATCAAC
Statistics
Matches: 160, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
142 160 1.00
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (142 bp):
TGTAAGACCTGTCTGGGACATGGCGTCAGCTTATTGTGTGTCAGTGTAACACTAGTTTGGGACAT
GCCACTGACACCAATAGATGAGAGCCAGTGTAAGACCTGCCTCAGACATGGCATCGACTTCGACA
TATGAAAGTCAG
Found at i:73757531 original size:47 final size:47
Alignment explanation
Indices: 73757370--73757585 Score: 289
Period size: 47 Copynumber: 4.6 Consensus size: 47
73757360 TTTGTATGCT
** * *
73757370 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGA--GATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCACCTA-GATGGATGAGCC
* * * *
73757414 ATTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATTTCGAT-AGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCA-CCTAGA--TGGATGAGCC
73757463 AGTGTAAGACCATGTCTGGGACATGGCATCACCTAGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCACCTAGATGGATGAGCC
73757510 AGTGTAAGACCATGTCTGGGACATGGCATCACCTAGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCACCTAGATGGATGAGCC
73757557 AGTGTAAGACCATGTCTGGGACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
73757586 TGGCATTACA
Statistics
Matches: 155, Mismatches: 9, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
44 8 0.05
45 14 0.09
46 11 0.07
47 81 0.52
48 5 0.03
49 33 0.21
50 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCACCTAGATGGATGAGCC
Found at i:73764916 original size:37 final size:37
Alignment explanation
Indices: 73764866--73764944 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
73764856 TTATTACGAA
* * *
73764866 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCAG
*
73764903 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCAG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCAG
73764940 GTCTT
1 GTCTT
73764945 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCAG
Found at i:73765141 original size:47 final size:47
Alignment explanation
Indices: 73765063--73766241 Score: 2133
Period size: 47 Copynumber: 25.1 Consensus size: 47
73765053 CCCTTCGGGA
* ** * * * * *
73765063 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
*** *
73765110 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
* *
73765157 CTTATCACATATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
* *
73765204 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
* *
73765251 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
73765298 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
73765345 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
73765392 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
73765439 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
73765486 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
73765533 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
73765580 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
73765627 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
73765674 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
73765721 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
73765768 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
73765815 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
73765862 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
73765909 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
73765956 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
73766003 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
* *
73766050 CTTATCACATATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
* *
73766097 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
* *
73766144 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
*
73766191 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
73766238 CTTA
1 CTTA
73766242 CTATCATTTC
Statistics
Matches: 1107, Mismatches: 25, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 1107 1.00
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73770176 original size:49 final size:49
Alignment explanation
Indices: 73770067--73770238 Score: 220
Period size: 49 Copynumber: 3.5 Consensus size: 49
73770057 CTTGTTGTGT
* * * * * *
73770067 GTCAGTGTGAGACCAGTCTGGGACATGGCACCGGCAC-CAATAGATGGGA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGGC-CTCGATATATGGAA
* * * *
73770116 GCCAGTTTAAGACCTGTCTGGGACATGGCATCAGCCTCGATATATGAAA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGGAA
*
73770165 GTCAGTGTAAGATCTGTCTGGGACATGGCATCGGCCTCGATATATGGAA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGGAA
*
73770214 GTCAGTGTAAGATCTGTCTGGGACA
1 GTCAGTGTAAGACCTGTCTGGGACA
73770239 CAACATCGAC
Statistics
Matches: 107, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
48 1 0.01
49 106 0.99
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.23
Consensus pattern (49 bp):
GTCAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGGAA
Found at i:73779909 original size:40 final size:41
Alignment explanation
Indices: 73779807--73780031 Score: 215
Period size: 40 Copynumber: 5.6 Consensus size: 41
73779797 TATTCGAATG
* * * *
73779807 ATATCCGGGCTAAGTCCCAAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGACT
* * ** * *
73779848 ATAACCGGACTAAGATTCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGACT
* * * * *
73779888 ATATCCGGGCTAAGACCCGAAGGTATTTCTGTTAG-CGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGACT
* * *
73779928 GTATCCGGGCTAAAACCCGAAGGCATTTGTGCTAG-CGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGACT
* * * *
73779968 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAG-TGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGACT
*
73780008 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
73780032 CTTGTGCAAG
Statistics
Matches: 146, Mismatches: 37, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
39 1 0.01
40 117 0.80
41 28 0.19
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGACT
Found at i:73785746 original size:8 final size:8
Alignment explanation
Indices: 73785717--73785755 Score: 51
Period size: 8 Copynumber: 4.5 Consensus size: 8
73785707 ATGAGTCTAA
73785717 TATTATATT
1 TATTAT-TT
73785726 TATTAGCTTT
1 TATTA--TTT
73785736 TATTATTT
1 TATTATTT
73785744 TATTATTT
1 TATTATTT
73785752 TATT
1 TATT
73785756 TTCCTAAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
8 15 0.54
9 5 0.18
10 7 0.25
11 1 0.04
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.69
Consensus pattern (8 bp):
TATTATTT
Found at i:73797136 original size:31 final size:31
Alignment explanation
Indices: 73797086--73797969 Score: 1689
Period size: 31 Copynumber: 28.5 Consensus size: 31
73797076 TTTAACGGTT
* *
73797086 ACTAGGCCAAAGCCTTTTCATAAATCATATC
1 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
* * * *
73797117 ATTGGGCCGAAACCTTTTCATAAATCATATC
1 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
*
73797148 ACTAGGCCGAAGCCTTTTCATAAATCATATC
1 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
73797179 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
73797210 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
73797241 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
73797272 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
73797303 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
73797334 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
73797365 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
73797396 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
73797427 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
73797458 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
73797489 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
73797520 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
73797551 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
73797582 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
73797613 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
73797644 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
73797675 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
73797706 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
73797737 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
73797768 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
73797799 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
73797830 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
73797861 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
73797892 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
73797923 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
*
73797954 ACT-GGCCAAAGCCTTT
1 ACTAGGCCGAAGCCTTT
73797970 ACTGTAAACG
Statistics
Matches: 844, Mismatches: 9, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
30 12 0.01
31 832 0.99
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (31 bp):
ACTAGGCCGAAGCCTTTTCATAAATCATTTC
Found at i:73798039 original size:42 final size:42
Alignment explanation
Indices: 73797992--73798083 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
73797982 ATGACCATAG
* ** *
73797992 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
* *
73798034 GCCCATTTCAATATCATATGAAATACCAATGAATGTATGCGA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
73798076 GCCCATTT
1 GCCCATTT
73798084 AGGGAGACTA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:73798274 original size:26 final size:26
Alignment explanation
Indices: 73798229--73798300 Score: 119
Period size: 26 Copynumber: 2.8 Consensus size: 26
73798219 CTCCTTTAAT
**
73798229 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
73798254 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
73798280 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
73798301 GCACTTCCTC
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
25 10 0.23
26 34 0.77
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:73798415 original size:20 final size:20
Alignment explanation
Indices: 73798348--73798400 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
73798338 ATTTATGAAT
73798348 ATATCATGTGCATTTCATAC
1 ATATCATGTGCATTTCATAC
*
73798368 ATATCATGTGCATTTTATAC
1 ATATCATGTGCATTTCATAC
73798388 ATATCATGTGCAT
1 ATATCATGTGCAT
73798401 AGCATATCAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.30, C:0.17, G:0.11, T:0.42
Consensus pattern (20 bp):
ATATCATGTGCATTTCATAC
Found at i:73799186 original size:27 final size:27
Alignment explanation
Indices: 73799125--73799188 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
73799115 GGCGTATTCA
73799125 TCATTTTACCATACAAGGGTATTACGG
1 TCATTTTACCATACAAGGGTATTACGG
* * *
73799152 TCACTTTACCCTACAGGGGCT-TTACGG
1 TCATTTTACCATACAAGGG-TATTACGG
*
73799179 TCTTTTTACC
1 TCATTTTACC
73799189 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATACAAGGGTATTACGG
Found at i:73799272 original size:27 final size:27
Alignment explanation
Indices: 73799242--73799349 Score: 94
Period size: 27 Copynumber: 3.9 Consensus size: 27
73799232 GTGAATCTAC
73799242 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
* *
73799269 AAACCGATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
73799295 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * **
73799325 AAATCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
73799350 ACAAATTGAG
Statistics
Matches: 66, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.02
27 40 0.61
28 7 0.11
29 17 0.26
30 1 0.02
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:73799355 original size:27 final size:27
Alignment explanation
Indices: 73799305--73799455 Score: 191
Period size: 27 Copynumber: 5.6 Consensus size: 27
73799295 AGAAAGTCAA
**
73799305 GGGTATTTCT-GTAATTTTGTAAA-TCAG
1 GGGTATTT-TGGTAATTTTACAAACT-AG
*
73799332 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
73799358 AGGGTATTTCGGTAATTTCACAAACTAG
1 -GGGTATTTTGGTAATTTTACAAACTAG
* *
73799386 TGGTATTTCGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
73799413 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
73799440 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
73799456 CTATCCTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
26 2 0.02
27 107 0.96
28 2 0.02
ACGTcount: A:0.28, C:0.08, G:0.23, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:73799391 original size:54 final size:54
Alignment explanation
Indices: 73799330--73799488 Score: 205
Period size: 54 Copynumber: 2.9 Consensus size: 54
73799320 TTTGTAAATC
*
73799330 AGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGGTAATTTCACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGGTAATTTCACAAACT
* * * *
73799384 AGTGGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAACT
* ** *
73799438 AGGGGTATTTTGGTAATTCTATCCTAC-AGGGGTATTTCAGTAATTTCACAA
1 AGGGGTATTTTGGTAATTTTA-CAAACTAGGGGTATTTCGGTAATTTCACAA
73799489 TCGAGGGTAA
Statistics
Matches: 90, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
54 85 0.94
55 5 0.06
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (54 bp):
AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAACT
Found at i:73799422 original size:81 final size:81
Alignment explanation
Indices: 73799306--73799455 Score: 223
Period size: 81 Copynumber: 1.9 Consensus size: 81
73799296 GAAAGTCAAG
* ** *
73799306 GGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGG
1 GGTATTTCGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGG
73799370 TAATTTCACAAACTAGT
65 TAATTTCACAAACTAGT
*
73799387 GGTATTTCGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
1 GGTATTTCGGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGG
73799451 TAATT
65 TAATT
73799456 CTATCCTACA
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
80 1 0.02
81 59 0.95
82 2 0.03
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.42
Consensus pattern (81 bp):
GGTATTTCGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGT
AATTTCACAAACTAGT
Found at i:73799472 original size:81 final size:81
Alignment explanation
Indices: 73799305--73799488 Score: 214
Period size: 81 Copynumber: 2.3 Consensus size: 81
73799295 AGAAAGTCAA
* ** *
73799305 GGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGG
1 GGGTATTTCAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGG
73799370 TAATTTCACAAACTAG
66 TAATTTCACAAACTAG
* * *
73799386 TGGTATTTCGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTT
1 GGGTATTTCAGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTC
**
73799449 GGTAA-TTCTATCCTAC-AG
64 GGTAATTTC-A-CAAACTAG
*
73799467 GGGTATTTCAGTAATTTCACAA
1 GGGTATTTCAGTAATTTTACAA
73799489 TCGAGGGTAA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
80 4 0.05
81 79 0.90
82 5 0.06
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.40
Consensus pattern (81 bp):
GGGTATTTCAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGG
TAATTTCACAAACTAG
Found at i:73799495 original size:27 final size:27
Alignment explanation
Indices: 73799326--73799495 Score: 136
Period size: 27 Copynumber: 6.3 Consensus size: 27
73799316 TAATTTTGTA
* *
73799326 AATC-AGGGGTATTTTGGTAATTTTAC
1 AATCTAGGGGTATTTCGGTAATTTCAC
73799352 AAAT-T-GAGGGTATTTCGGTAATTTCAC
1 -AATCTAG-GGGTATTTCGGTAATTTCAC
* * *
73799379 AAACTAGTGGTATTTCGGTAATTTTAC
1 AATCTAGGGGTATTTCGGTAATTTCAC
* * *
73799406 AAACTAGGGGTATTTTGGTAATTTTAC
1 AATCTAGGGGTATTTCGGTAATTTCAC
* *
73799433 AAACTAGGGGTATTTTGGTAA-TT--C
1 AATCTAGGGGTATTTCGGTAATTTCAC
* *
73799457 TATCCTACAGGGGTATTTCAGTAATTTCAC
1 AAT-CT--AGGGGTATTTCGGTAATTTCAC
*
73799487 AATCGAGGG
1 AATCTAGGG
73799496 TAAAATAGTA
Statistics
Matches: 120, Mismatches: 13, Indels: 20
0.78 0.08 0.13
Matches are distributed among these distances:
24 2 0.02
25 2 0.02
26 5 0.04
27 104 0.87
28 3 0.03
29 1 0.01
30 3 0.03
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (27 bp):
AATCTAGGGGTATTTCGGTAATTTCAC
Found at i:73799521 original size:27 final size:27
Alignment explanation
Indices: 73799487--73799684 Score: 254
Period size: 27 Copynumber: 7.3 Consensus size: 27
73799477 GTAATTTCAC
* * *
73799487 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
73799514 AA-CTGAGGGTAAAATGGTAATTTTATA
1 AATC-GAGGGTAAAATGGTAATTCTATA
*
73799541 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
73799568 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * * *
73799595 AATTGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
73799622 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
73799649 AATTGAGGGTAAAATAGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTCTATA
73799676 AATCGAGGG
1 AATCGAGGG
73799685 CATTTCAGTA
Statistics
Matches: 150, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 148 0.99
28 1 0.01
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Found at i:73799602 original size:81 final size:81
Alignment explanation
Indices: 73799487--73799684 Score: 306
Period size: 81 Copynumber: 2.4 Consensus size: 81
73799477 GTAATTTCAC
* * * *
73799487 AATCGAGGGTAAAATAGTAATTTTGTAAACTGAGGGTAAAATGGTAATTTTATAAATCGAGGGTA
1 AATCGAGGGTAAAATAGTAATTCTATAAATTGAGGGTAAAACGGTAATTTTATAAATCGAGGGTA
73799552 AAACGGTAATTCTATA
66 AAACGGTAATTCTATA
* * *
73799568 AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATAGTAATTCTATAAATTGAGGGTAAAACGGTAATTTTATAAATCGAGGGTA
73799633 AAACGGTAATTCTATA
66 AAACGGTAATTCTATA
* * *
73799649 AATTGAGGGTAAAATAGTAATTCTACAAATCGAGGG
1 AATCGAGGGTAAAATAGTAATTCTATAAATTGAGGG
73799685 CATTTCAGTA
Statistics
Matches: 106, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 106 1.00
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.29
Consensus pattern (81 bp):
AATCGAGGGTAAAATAGTAATTCTATAAATTGAGGGTAAAACGGTAATTTTATAAATCGAGGGTA
AAACGGTAATTCTATA
Found at i:73816977 original size:13 final size:13
Alignment explanation
Indices: 73816959--73816984 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
73816949 TTGAATCCAT
73816959 ACCAAAACAATCA
1 ACCAAAACAATCA
73816972 ACCAAAACAATCA
1 ACCAAAACAATCA
73816985 TGAAACATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.31, G:0.00, T:0.08
Consensus pattern (13 bp):
ACCAAAACAATCA
Found at i:73821548 original size:18 final size:17
Alignment explanation
Indices: 73821511--73821549 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
73821501 TTATTTTCCC
73821511 TTTTTCTTACTTTCAAT
1 TTTTTCTTACTTTCAAT
* *
73821528 TTTTTCTTTCTTTCACT
1 TTTTTCTTACTTTCAAT
73821545 TTTTT
1 TTTTT
73821550 ATTAATTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.10, C:0.18, G:0.00, T:0.72
Consensus pattern (17 bp):
TTTTTCTTACTTTCAAT
Found at i:73822287 original size:23 final size:25
Alignment explanation
Indices: 73822245--73822290 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
73822235 TTTTTATTTT
*
73822245 AAAAAAAGTTATTTCTTAATATTGG
1 AAAAAAAGTTATGTCTTAATATTGG
73822270 AAAAAAA-TTATGTC-TAATATT
1 AAAAAAAGTTATGTCTTAATATT
73822291 TTTATCTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 7 0.35
24 6 0.30
25 7 0.35
ACGTcount: A:0.48, C:0.04, G:0.09, T:0.39
Consensus pattern (25 bp):
AAAAAAAGTTATGTCTTAATATTGG
Found at i:73822367 original size:8 final size:9
Alignment explanation
Indices: 73822349--73822405 Score: 53
Period size: 9 Copynumber: 6.2 Consensus size: 9
73822339 TTACACTTAA
73822349 TTATAATTT
1 TTATAATTT
73822358 TTAT-ATTT
1 TTATAATTT
* **
73822366 TTCTAAAGT
1 TTATAATTT
*
73822375 TTATACTTTT
1 TTATA-ATTT
73822385 TTATAATTTT
1 TTATAA-TTT
73822395 TTATAATTT
1 TTATAATTT
73822404 TT
1 TT
73822406 TTAAAATTTC
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
8 7 0.19
9 15 0.41
10 15 0.41
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.67
Consensus pattern (9 bp):
TTATAATTT
Found at i:73822389 original size:10 final size:10
Alignment explanation
Indices: 73822374--73822406 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
73822364 TTTTCTAAAG
*
73822374 TTTATACTTT
1 TTTATAATTT
73822384 TTTATAATTT
1 TTTATAATTT
73822394 TTTATAATTT
1 TTTATAATTT
73822404 TTT
1 TTT
73822407 TAAAATTTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (10 bp):
TTTATAATTT
Found at i:73822404 original size:19 final size:19
Alignment explanation
Indices: 73822319--73822406 Score: 65
Period size: 20 Copynumber: 4.6 Consensus size: 19
73822309 TTCTAACTTA
*
73822319 TTATATATTTTTTAAAATTT
1 TTATA-ATTTTTTATAATTT
* * **
73822339 TTACACTTAATTATAATTT
1 TTATAATTTTTTATAATTT
*
73822358 TTAT-ATTTTTCTA-AA-GT
1 TTATAATTTTT-TATAATTT
*
73822375 TTATACTTTTTTATAATTTT
1 TTATAATTTTTTATAA-TTT
73822395 TTATAATTTTTT
1 TTATAATTTTTT
73822407 TAAAATTTCT
Statistics
Matches: 50, Mismatches: 13, Indels: 10
0.68 0.18 0.14
Matches are distributed among these distances:
17 7 0.14
18 12 0.24
19 15 0.30
20 16 0.32
ACGTcount: A:0.31, C:0.05, G:0.01, T:0.64
Consensus pattern (19 bp):
TTATAATTTTTTATAATTT
Found at i:73822405 original size:11 final size:11
Alignment explanation
Indices: 73822381--73822414 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
73822371 AAGTTTATAC
73822381 TTTTTTATAA-
1 TTTTTTATAAT
73822391 TTTTTTATAAT
1 TTTTTTATAAT
*
73822402 TTTTTTAAAAT
1 TTTTTTATAAT
73822413 TT
1 TT
73822415 CTTAAATGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 10 0.45
11 12 0.55
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
TTTTTTATAAT
Found at i:73822426 original size:21 final size:21
Alignment explanation
Indices: 73822381--73822426 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
73822371 AAGTTTATAC
* *
73822381 TTTTTTATAATTTTTTATAAT
1 TTTTTTAAAATTTCTTATAAT
73822402 TTTTTTAAAATTTCTTA-AAT
1 TTTTTTAAAATTTCTTATAAT
*
73822422 GTTTT
1 TTTTT
73822427 AGATTATATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (21 bp):
TTTTTTAAAATTTCTTATAAT
Found at i:73825442 original size:16 final size:16
Alignment explanation
Indices: 73825421--73825455 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
73825411 TATTATACCC
73825421 AACCATAAATCTCATG
1 AACCATAAATCTCATG
73825437 AACCATAAATCTCATG
1 AACCATAAATCTCATG
73825453 AAC
1 AAC
73825456 ATGTGTATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.46, C:0.26, G:0.06, T:0.23
Consensus pattern (16 bp):
AACCATAAATCTCATG
Found at i:73829853 original size:38 final size:38
Alignment explanation
Indices: 73829811--73829886 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
73829801 TTCATCCTTT
73829811 TTCATTTCTTTTGGCCAAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCAAAAATTCTAAGGAAGGAGGAA
*
73829849 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCAAAAATTCTAAGGAAGGAGGAA
73829887 GGAGTTCTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.32
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCAAAAATTCTAAGGAAGGAGGAA
Found at i:73831173 original size:40 final size:40
Alignment explanation
Indices: 73831079--73831223 Score: 200
Period size: 40 Copynumber: 3.6 Consensus size: 40
73831069 TACTCGAATG
* *
73831079 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCT-AGCGACT
* * *
73831120 ACATCCGGACTAAGATCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
* * *
73831160 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
*
73831200 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
73831224 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
40 64 0.70
41 28 0.30
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
Found at i:73832147 original size:290 final size:290
Alignment explanation
Indices: 73831627--73832207 Score: 1153
Period size: 290 Copynumber: 2.0 Consensus size: 290
73831617 CAGCTATCGG
73831627 ACTCGGGATTTTTGGAAGTCGAAGTCTCCCACACTATCAAAGCCCCCTTTTGGTACAATTTTGGT
1 ACTCGGGATTTTTGGAAGTCGAAGTCTCCCACACTATCAAAGCCCCCTTTTGGTACAATTTTGGT
73831692 TGAACTTTGAAATGGCATGTATAGGACTACCCTTTTGTTGTTGGTCATGTACCCTTCGGTTTTGT
66 TGAACTTTGAAATGGCATGTATAGGACTACCCTTTTGTTGTTGGTCATGTACCCTTCGGTTTTGT
73831757 GTAAATTTGGATAGCCATGCGAAAATGGCTTAAATATACTTTGATCATAGCATTATAATCATTTT
131 GTAAATTTGGATAGCCATGCGAAAATGGCTTAAATATACTTTGATCATAGCATTATAATCATTTT
73831822 GTATGTTGTCCGTCGAGAGGTATGGAAATGTTGGTAACGGTTAGCCATGGGAAGGGTTATTCTTG
196 GTATGTTGTCCGTCGAGAGGTATGGAAATGTTGGTAACGGTTAGCCATGGGAAGGGTTATTCTTG
*
73831887 ATCACTTTTGGAATATGTATGACAAACTCT
261 ATCACCTTTGGAATATGTATGACAAACTCT
73831917 ACTCGGGATTTTTGGAAGTCGAAGTCTCCCACACTATCAAAGCCCCCTTTTGGTACAATTTTGGT
1 ACTCGGGATTTTTGGAAGTCGAAGTCTCCCACACTATCAAAGCCCCCTTTTGGTACAATTTTGGT
73831982 TGAACTTTGAAATGGCATGTATAGGACTACCCTTTTGTTGTTGGTCATGTACCCTTCGGTTTTGT
66 TGAACTTTGAAATGGCATGTATAGGACTACCCTTTTGTTGTTGGTCATGTACCCTTCGGTTTTGT
73832047 GTAAATTTGGATAGCCATGCGAAAATGGCTTAAATATACTTTGATCATAGCATTATAATCATTTT
131 GTAAATTTGGATAGCCATGCGAAAATGGCTTAAATATACTTTGATCATAGCATTATAATCATTTT
73832112 GTATGTTGTCCGTCGAGAGGTATGGAAATGTTGGTAACGGTTAGCCATGGGAAGGGTTATTCTTG
196 GTATGTTGTCCGTCGAGAGGTATGGAAATGTTGGTAACGGTTAGCCATGGGAAGGGTTATTCTTG
73832177 ATCACCTTTGGAATATGTATGACAAACTCT
261 ATCACCTTTGGAATATGTATGACAAACTCT
73832207 A
1 A
73832208 GTTGATCCAT
Statistics
Matches: 290, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
290 290 1.00
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (290 bp):
ACTCGGGATTTTTGGAAGTCGAAGTCTCCCACACTATCAAAGCCCCCTTTTGGTACAATTTTGGT
TGAACTTTGAAATGGCATGTATAGGACTACCCTTTTGTTGTTGGTCATGTACCCTTCGGTTTTGT
GTAAATTTGGATAGCCATGCGAAAATGGCTTAAATATACTTTGATCATAGCATTATAATCATTTT
GTATGTTGTCCGTCGAGAGGTATGGAAATGTTGGTAACGGTTAGCCATGGGAAGGGTTATTCTTG
ATCACCTTTGGAATATGTATGACAAACTCT
Found at i:73833455 original size:50 final size:49
Alignment explanation
Indices: 73833386--73833535 Score: 203
Period size: 50 Copynumber: 3.0 Consensus size: 49
73833376 CACATAGTGG
* ** *
73833386 GATGCCAATGCCATATCCCAGGTATGGTCTTACATGGGTTGACACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT-ACACATATC
* *
73833436 GATTCCAATGTCATGTCCCAGACATGGTCTTACATGGGATCACACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT-ACACATATC
* *
73833486 GATGCCAATGCCATGTCCCCGACATGGTCTTTCATGGGAT-CACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATACACATATC
73833534 GA
1 GA
73833536 AACTTTATCG
Statistics
Matches: 89, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
48 10 0.11
50 79 0.89
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (49 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATACACATATC
Found at i:73836849 original size:47 final size:47
Alignment explanation
Indices: 73836755--73836972 Score: 227
Period size: 47 Copynumber: 4.7 Consensus size: 47
73836745 CCATCTGTGC
*
73836755 CGATGCCGTGTCCCAGACA-GGTCTTACACTA--ACACATGTCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATGTCAAGT
*
73836799 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATGTCAAGT
* *
73836846 CGATGCCATGTCCCAGACATGGTCTTACACT-G-ACTATCATCATCAAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCAC-A-CAT-GTCAA-GT
* * * * **
73836895 CGATG-CGTGTCCTAGACA-CGTCTTACACTAGCACTCAACTCAA-T
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATGTCAAGT
*
73836939 ACCGATGCCATGTCTCAGACATGGTCTTACACTA
1 --CGATGCCATGTCCCAGACATGGTCTTACACTA
73836973 ACACGCATAT
Statistics
Matches: 145, Mismatches: 16, Indels: 22
0.79 0.09 0.12
Matches are distributed among these distances:
44 18 0.12
45 13 0.09
46 11 0.08
47 68 0.47
48 27 0.19
49 8 0.06
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATGTCAAGT
Found at i:73836945 original size:95 final size:92
Alignment explanation
Indices: 73836754--73837065 Score: 314
Period size: 95 Copynumber: 3.3 Consensus size: 92
73836744 TCCATCTGTG
* * * *
73836754 CCGATGCCGTGTCCCAGACA-GGTCTTACACTAACACATGTCAA-GTCGATGCCATGTCCCAGAC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAACACATATCAAGGCCGATG-CATGTCCTAGAC
* * *
73836817 ATGGTCTTACACTAGCTCACATGTCAAGT-
65 A-CGTCTTACACTAGCTCTCATCTCAA-TA
* *
73836846 -CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCATCAAGGCCGATGCGTGTCCTAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAAC-A-CAT-ATCAAGGCCGATGCATGTCCTAG
* *
73836910 ACACGTCTTACACTAGCACTCAACTCAATA
63 ACACGTCTTACACTAGCTCTCATCTCAATA
* * *
73836940 CCGATGCCATGTCTCAGACATGGTCTTACACTAACACGCATATCTCGAGGCCGATGCATATCCTA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAACA--CATA--TCAAGGCCGATGCATGTCCTA
** * *
73837005 GACATTTCTTACACTGGCTCTCGTCTCAA-A
62 GACACGTCTTACACTAGCTCTCATCTCAATA
73837035 GCCGATG-CATGTCCCAGACAT-GTCTTACACT
1 -CCGATGCCATGTCCCAGACATGGTCTTACACT
73837066 GGCGCACATA
Statistics
Matches: 185, Mismatches: 24, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
91 18 0.10
92 13 0.07
93 2 0.01
94 35 0.19
95 64 0.35
96 53 0.29
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (92 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAACACATATCAAGGCCGATGCATGTCCTAGACA
CGTCTTACACTAGCTCTCATCTCAATA
Found at i:73837039 original size:142 final size:139
Alignment explanation
Indices: 73836753--73837065 Score: 337
Period size: 142 Copynumber: 2.2 Consensus size: 139
73836743 ATCCATCTGT
* **
73836753 GCCGATGCCGTGTCCCAGACAGGTCTTACACTAACACATGTCAAGTCGATGCCATGTCCCAGACA
1 GCCGATG-CGTGTCCCAGACACGTCTTACACTAACACAACTCAAGTCGATGCCATGTCCCAGACA
* * * * *
73836818 TGGTCTTACACTAGCTCACATGTCAAGTCGATGCCATGTCCCAGACATGGTCTTACACTGACTAT
65 TGGTCTTACACTAACGCACATCTCAAGCCGATGCCATATCCCAGACATGGTCTTACACTGACTAT
*
73836883 CATCATCAAG
130 CATCATCAAA
* * *
73836893 GCCGATGCGTGTCCTAGACACGTCTTACACTAGCACTCAACTCAA-TACCGATGCCATGTCTCAG
1 GCCGATGCGTGTCCCAGACACGTCTTACACTA--ACACAACTCAAGT--CGATGCCATGTCCCAG
* * * *
73836957 ACATGGTCTTACACTAACACGCATATCTCGAGGCCGATG-CATATCCTAGACAT-TTCTTACACT
62 ACATGGTCTTACACT-A-ACGCACATCTC-AAGCCGATGCCATATCCCAGACATGGTCTTACACT
* * *
73837020 GGCTCTCGTC-TCAAA
124 GACTATCATCATCAAA
* *
73837035 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCGTGTCCCAGACACGTCTTACACT
73837066 GGCGCACATA
Statistics
Matches: 144, Mismatches: 22, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
139 23 0.16
140 8 0.06
141 8 0.06
142 62 0.43
143 17 0.12
144 19 0.13
145 7 0.05
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (139 bp):
GCCGATGCGTGTCCCAGACACGTCTTACACTAACACAACTCAAGTCGATGCCATGTCCCAGACAT
GGTCTTACACTAACGCACATCTCAAGCCGATGCCATATCCCAGACATGGTCTTACACTGACTATC
ATCATCAAA
Found at i:73839794 original size:50 final size:50
Alignment explanation
Indices: 73839717--73839860 Score: 225
Period size: 50 Copynumber: 2.9 Consensus size: 50
73839707 CACATAGTGA
* * * * *
73839717 GATGCCAATGTCATATCCTAGATATGGTCTTACATGGGTTCACACATACC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACATACC
*
73839767 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACATACC
*
73839817 GATGCCAATGCCATGTCCCCGACATGGTCTTACATGGGATCACA
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACA
73839861 TATCGAAACT
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 87 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (50 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACATACC
Found at i:73858415 original size:24 final size:24
Alignment explanation
Indices: 73858388--73858434 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
73858378 ATGTATGAAA
73858388 TGTGAGCTCAATATATGCTATATT
1 TGTGAGCTCAATATATGCTATATT
73858412 TGTGAGCTCAATATATGCTATAT
1 TGTGAGCTCAATATATGCTATAT
73858435 GAGGTGTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (24 bp):
TGTGAGCTCAATATATGCTATATT
Found at i:73859176 original size:13 final size:13
Alignment explanation
Indices: 73859158--73859192 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
73859148 CCTAGCACAC
73859158 GGGCATGTGCCCT
1 GGGCATGTGCCCT
*
73859171 GGGCATGTGCCTT
1 GGGCATGTGCCCT
*
73859184 GGCCATGTG
1 GGGCATGTG
73859193 ACATTTTGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.09, C:0.26, G:0.40, T:0.26
Consensus pattern (13 bp):
GGGCATGTGCCCT
Found at i:73863090 original size:39 final size:39
Alignment explanation
Indices: 73863036--73863316 Score: 409
Period size: 39 Copynumber: 7.2 Consensus size: 39
73863026 GAAATGTGTA
73863036 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
* * *
73863075 TGGAAATATATCCGGGCCAAAGACCCACAGGCTTCGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
*
73863114 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
* * *
73863153 TGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTTGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
* * *
73863192 TGGAAATATATCTGGGCCAAAGACCCGCAGGCTTCGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
* * * *
73863231 TGGAAATGTATCCGGGCTAAAGACTCGCAAGCTTTGTAC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
* *
73863270 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
*
73863309 TGGTAATA
1 TGGAAATA
73863317 AAATTTTGGG
Statistics
Matches: 214, Mismatches: 28, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 214 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
Found at i:73863242 original size:117 final size:117
Alignment explanation
Indices: 73863032--73863316 Score: 482
Period size: 117 Copynumber: 2.4 Consensus size: 117
73863022 AGACGAAATG
* *
73863032 TGTA-TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGCTGGAAATATATCCGGGCCAAA
1 TGTACTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGAAATATATCCGGGCCAAA
*
73863096 GACCCACAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTT
66 GACCCACAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGACCCGCAAGCTT
* * *
73863148 TGTGCTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTTGTGCTGGAAATATATCTGGGCCAAA
1 TGTACTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGAAATATATCCGGGCCAAA
* *
73863213 GACCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGACTCGCAAGCTT
66 GACCCACAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGACCCGCAAGCTT
*
73863265 TGTACTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGTAATA
1 TGTACTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGAAATA
73863317 AAATTTTGGG
Statistics
Matches: 157, Mismatches: 11, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
116 3 0.02
117 154 0.98
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (117 bp):
TGTACTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGAAATATATCCGGGCCAAA
GACCCACAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGACCCGCAAGCTT
Found at i:73869908 original size:24 final size:24
Alignment explanation
Indices: 73869881--73869928 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
73869871 AAAATAAACA
73869881 AAGTAAGCTTTATAGCTTAGTAAG
1 AAGTAAGCTTTATAGCTTAGTAAG
73869905 AAGTAAGCTTTATAGCTTAGTAAG
1 AAGTAAGCTTTATAGCTTAGTAAG
73869929 CTCGTATGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.33
Consensus pattern (24 bp):
AAGTAAGCTTTATAGCTTAGTAAG
Found at i:73870242 original size:40 final size:40
Alignment explanation
Indices: 73870198--73870337 Score: 167
Period size: 41 Copynumber: 3.5 Consensus size: 40
73870188 CAAATCGCAC
* *
73870198 ACTAAGTGCGATATATAGCCAAGCTCTCTCGATCTCACAA
1 ACTAAGTGCCATATATAGCCAAGCTATCTCGATCTCACAA
* * *
73870238 ACTAAGTGCCATATATAGCCAAAGCTATCTTGATCTCGCAC
1 ACTAAGTGCCATATATAGCC-AAGCTATCTCGATCTCACAA
* *
73870279 ACTAAGTGCCATATATAGCCAAAGCTATGTCGAATCGCAC--
1 ACTAAGTGCCATATATAGCC-AAGCTATCTCG-ATCTCACAA
*
73870319 ACTAAGTGCCACATATAGC
1 ACTAAGTGCCATATATAGC
73870338 TAATTTGTCG
Statistics
Matches: 88, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
40 37 0.42
41 46 0.52
42 5 0.06
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (40 bp):
ACTAAGTGCCATATATAGCCAAGCTATCTCGATCTCACAA
Found at i:73870283 original size:41 final size:41
Alignment explanation
Indices: 73870179--73870337 Score: 207
Period size: 40 Copynumber: 4.0 Consensus size: 41
73870169 TACATAGTCG
** *
73870179 AAGCTATCTC-AAATCGCACACTAAGTGCGATATATAGCC-
1 AAGCTATCTCGATCTCGCACACTAAGTGCCATATATAGCCA
* * *
73870218 AAGCTCTCTCGATCTCACAAACTAAGTGCCATATATAGCCA
1 AAGCTATCTCGATCTCGCACACTAAGTGCCATATATAGCCA
*
73870259 AAGCTATCTTGATCTCGCACACTAAGTGCCATATATAGCCA
1 AAGCTATCTCGATCTCGCACACTAAGTGCCATATATAGCCA
* * *
73870300 AAGCTATGTCGA-ATCGCACACTAAGTGCCACATATAGC
1 AAGCTATCTCGATCTCGCACACTAAGTGCCATATATAGC
73870338 TAATTTGTCG
Statistics
Matches: 104, Mismatches: 14, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 9 0.09
40 48 0.46
41 47 0.45
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (41 bp):
AAGCTATCTCGATCTCGCACACTAAGTGCCATATATAGCCA
Found at i:73874058 original size:48 final size:47
Alignment explanation
Indices: 73873896--73874127 Score: 175
Period size: 48 Copynumber: 4.9 Consensus size: 47
73873886 GTCGAGGCTG
* * * * * *
73873896 ATGCCATGTCCCAGACATGGTCTTACACCAGCTCTCAT-CTCAGTACCG
1 ATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATAC-AAG-ACCA
* * * * *
73873944 ATGCCATGTTCCAAACAAGGTCTTACACTGGCTCACGTATCGAGGCCA
1 ATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATA-CAAGACCA
* ** * * *
73873992 AAGCCGCG-TCCTAGACATGGCCTTACACTAGCTCTTGCATA-AATG-CCA
1 ATGCCATGTTCC-AAACATGGTCTTACACTAGCTC--ACATACAA-GACCA
* *
73874040 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCAAGACCG
1 ATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATA-CAAGACCA
* *
73874088 ATGCCATGTTCCAAACATGGTCTTACGCTGGCTCACATAC
1 ATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATAC
73874128 CCTAGTATCA
Statistics
Matches: 145, Mismatches: 29, Indels: 21
0.74 0.15 0.11
Matches are distributed among these distances:
46 4 0.03
47 5 0.03
48 126 0.87
49 6 0.04
50 4 0.03
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (47 bp):
ATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATACAAGACCA
Found at i:73879067 original size:46 final size:46
Alignment explanation
Indices: 73879014--73879184 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
73879004 AGATTTGTGT
*
73879014 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGA
* * *
73879060 GCCAGTGTAGGACCATGTCTGGGACATGGCAT-TG--GCATTGA-GACGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCACATT-ATGA-GA
*
73879106 GGGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGA
1 --GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGA
* *
73879154 GCCAGTGTAAGACATGTTTGGGATATGCATC
1 GCCAGTGTAAGACATGTCTGGGACATGCATC
73879185 GGCCTCGAGA
Statistics
Matches: 104, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
45 6 0.06
46 45 0.43
47 30 0.29
48 17 0.16
49 6 0.06
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGA
Found at i:73881777 original size:40 final size:40
Alignment explanation
Indices: 73881722--73881864 Score: 225
Period size: 40 Copynumber: 3.6 Consensus size: 40
73881712 TGGATGATAA
* * *
73881722 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
73881762 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
73881802 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
73881842 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
73881865 CGAGCGACCT
Statistics
Matches: 97, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
39 1 0.01
40 96 0.99
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:73889220 original size:53 final size:55
Alignment explanation
Indices: 73889090--73889291 Score: 228
Period size: 53 Copynumber: 3.8 Consensus size: 55
73889080 ATATGCGGGT
* * * *
73889090 ACCTTACC-ATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTT---TT-GAA
1 ACCTTACCAATTGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTAGAA
*
73889140 A-CTTACC-ATTGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATG-A
1 ACCTTACCAATTGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAA
* *
73889193 A-CTCT-CCAA-TGCCATGCCTTGACATGGTATTACATGATTTCCTTGCCTTAGAA
1 ACCT-TACCAATTGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTAGAA
* *
73889246 ACCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 ACCTTACCAATTGCCATGCCTTGACATGGTCTTACATGATATCCTT
73889292 AAACCCTAAT
Statistics
Matches: 130, Mismatches: 11, Indels: 17
0.82 0.07 0.11
Matches are distributed among these distances:
49 39 0.30
50 1 0.01
52 3 0.02
53 47 0.36
54 9 0.07
55 31 0.24
ACGTcount: A:0.22, C:0.26, G:0.16, T:0.36
Consensus pattern (55 bp):
ACCTTACCAATTGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTAGAA
Found at i:73895959 original size:55 final size:54
Alignment explanation
Indices: 73895829--73896030 Score: 225
Period size: 55 Copynumber: 3.8 Consensus size: 54
73895819 ACGCGGGTAC
* * * *
73895829 CTTACCATTGCCATGACTTGTCATGGTCTTACATGGTATCCTT---TT-G-AAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAAA
* * * *
73895878 CTTACCATTGCCATGTCTTGACATGGTCTTACGTGATATCCTTGCCTTAATAAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTT-AGAAAA
* * * *
73895933 CTCACCAATGCCATGCCTTGACATGGTATTACATGATTTCCTTGCCTTAGAAAC
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAAA
* *
73895987 CTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGATATCCTT
73896031 AAACCCTAAT
Statistics
Matches: 128, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
49 39 0.30
52 2 0.02
54 11 0.09
55 76 0.59
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAAA
Found at i:73899807 original size:40 final size:40
Alignment explanation
Indices: 73899748--73900003 Score: 333
Period size: 40 Copynumber: 6.5 Consensus size: 40
73899738 AAGCCAAGTA
* * * *
73899748 CCTTCGGGAGTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
73899787 CCTTCGAGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
73899827 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
73899867 CCTTCGGGACTTA--ACGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
73899905 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
73899945 GCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
73899985 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
73900004 TTATCATCCG
Statistics
Matches: 193, Mismatches: 19, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
38 36 0.19
39 12 0.06
40 145 0.75
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:73899905 original size:78 final size:79
Alignment explanation
Indices: 73899748--73900003 Score: 304
Period size: 78 Copynumber: 3.2 Consensus size: 79
73899738 AAGCCAAGTA
* * * * * * * *
73899748 CCTTCGGGAGTTA-ACCGGATATAGCT-ACTCGCTCGAATGCCTTCGAGACATAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATACCTTCGGGACTTA-CACGGATATA
*
73899811 GTAACTCGCACCAATG
64 GTAACTCGCACAAATG
73899827 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATACCTTCGGGACTTA-ACGGATATAGT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATACCTTCGGGACTTACACGGATATAGT
73899891 AACTCGCACAAATG
66 AACTCGCACAAATG
* ** *
73899905 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATGGCTTCGGGACTTAGCCCGGA-ACTA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATACCTTCGGGACTTA-CACGGATA-TA
* * *
73899969 GTCACTAGCGCAAATG
64 GTAACTCGCACAAATG
73899985 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
73900004 TTATCATCCG
Statistics
Matches: 155, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
78 73 0.47
79 14 0.09
80 68 0.44
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATACCTTCGGGACTTACACGGATATAGT
AACTCGCACAAATG
Found at i:73899908 original size:118 final size:119
Alignment explanation
Indices: 73899746--73899997 Score: 357
Period size: 118 Copynumber: 2.1 Consensus size: 119
73899736 CCAAGCCAAG
* * * *
73899746 TACCTTCGGGAGTTAACCGGATATAGCTACTCGCTCGAATGCCTTCGAGACATAGCCCGGATATA
1 TACCTTCGGGACTTAACCGGATATAGCTACTCGCACAAATGCCTTCGAGACATAACCCGGATATA
* *
73899811 GTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAA
66 GTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ACTAGTAACTAGCACAAA
* *
73899865 TACCTTCGGGACTTAA-CGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAACCCGGATAT
1 TACCTTCGGGACTTAACCGGATATAGCT-ACTCGCACAAATGCCTTCGAGACATAACCCGGATAT
* * *
73899928 AGTAACTCGCACAAATGGCTTCGGGACTTAGCCCGGAACTAGTCACTAGCGCAAA
65 AGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTAACTAGCACAAA
*
73899983 TGCCTTCGGGACTTA
1 TACCTTCGGGACTTA
73899998 GCCCGGTTAT
Statistics
Matches: 119, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
117 2 0.02
118 102 0.86
119 15 0.13
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (119 bp):
TACCTTCGGGACTTAACCGGATATAGCTACTCGCACAAATGCCTTCGAGACATAACCCGGATATA
GTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTAACTAGCACAAA
Found at i:73903796 original size:40 final size:40
Alignment explanation
Indices: 73903741--73903934 Score: 316
Period size: 40 Copynumber: 4.8 Consensus size: 40
73903731 GCATTTGTAT
73903741 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
73903781 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
73903821 ATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
73903861 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* ** *
73903901 CTATGCCCGGGCTAAGACCCGAAGGCAATTGTGC
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
73903935 TTGTGGTAAT
Statistics
Matches: 142, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
Found at i:73907169 original size:194 final size:194
Alignment explanation
Indices: 73906840--73907227 Score: 749
Period size: 194 Copynumber: 2.0 Consensus size: 194
73906830 AGTAAGACTT
73906840 TACCTATTGAGTCTACTGAGTTCATAATTCGGGTGTCAAATCCCTTGGGTCGTTACGTGCTTGTC
1 TACCTATTGAGTCTACTGAGTTCATAATTCGGGTGTCAAATCCCTTGGGTCGTTACGTGCTTGTC
*
73906905 GACAAAGTGTGTAAGAAATGTCCCCTGGAAATTCGAGGTTCCTGTTTTCCGGCGGACTTGATGCT
66 GACAAAGTGTGTAAGAAATGTCCCCTAGAAATTCGAGGTTCCTGTTTTCCGGCGGACTTGATGCT
73906970 TTTGCCGTTTGATGTTATTCTTGGTTTGGATTGGCTGACCGTGCATGATGCAGTTGTGAATTGC
131 TTTGCCGTTTGATGTTATTCTTGGTTTGGATTGGCTGACCGTGCATGATGCAGTTGTGAATTGC
*
73907034 TACCTATTGAGTCTACTGAGTTCGTAATTCGGGTGTCAAATCCCTTGGGTCGTTACGTGCTTGTC
1 TACCTATTGAGTCTACTGAGTTCATAATTCGGGTGTCAAATCCCTTGGGTCGTTACGTGCTTGTC
*
73907099 GACAAAGTGTGTAAGAAATGTCCCCTAGTAATTCGAGGTTCCTGTTTTCCGGCGGACTTGATGCT
66 GACAAAGTGTGTAAGAAATGTCCCCTAGAAATTCGAGGTTCCTGTTTTCCGGCGGACTTGATGCT
73907164 TTTGCCGTTTGATGTTATTCTTGGTTTGGATTGGCTGACCGTGCATGATGCAGTTGTGAATTGC
131 TTTGCCGTTTGATGTTATTCTTGGTTTGGATTGGCTGACCGTGCATGATGCAGTTGTGAATTGC
73907228 AAAAGCAAGA
Statistics
Matches: 191, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
194 191 1.00
ACGTcount: A:0.18, C:0.19, G:0.27, T:0.36
Consensus pattern (194 bp):
TACCTATTGAGTCTACTGAGTTCATAATTCGGGTGTCAAATCCCTTGGGTCGTTACGTGCTTGTC
GACAAAGTGTGTAAGAAATGTCCCCTAGAAATTCGAGGTTCCTGTTTTCCGGCGGACTTGATGCT
TTTGCCGTTTGATGTTATTCTTGGTTTGGATTGGCTGACCGTGCATGATGCAGTTGTGAATTGC
Found at i:73914350 original size:17 final size:17
Alignment explanation
Indices: 73914328--73914373 Score: 83
Period size: 17 Copynumber: 2.7 Consensus size: 17
73914318 TGCCCGTGTG
73914328 GGCCCACACGCCCATGT
1 GGCCCACACGCCCATGT
*
73914345 GGCCCACACACCCATGT
1 GGCCCACACGCCCATGT
73914362 GGCCCACACGCC
1 GGCCCACACGCC
73914374 TAGATTGGCC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.20, C:0.50, G:0.22, T:0.09
Consensus pattern (17 bp):
GGCCCACACGCCCATGT
Found at i:73922937 original size:26 final size:26
Alignment explanation
Indices: 73922908--73923003 Score: 79
Period size: 27 Copynumber: 3.6 Consensus size: 26
73922898 TTAGTTTACC
*
73922908 AAATTACTGAAATACCTCCAGTTGTA
1 AAATTACTCAAATACCTCCAGTTGTA
* * *
73922934 AAATTAC-CAAAGTACCCCCGGTTTATA
1 AAATTACTCAAA-TACCTCCAG-TTGTA
* * *
73922961 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTCAAATA-CCTCCAGTTGTA
73922988 AAATTA-TCGAAATACC
1 AAATTACTC-AAATACC
73923004 CCCGTAAGGT
Statistics
Matches: 55, Mismatches: 10, Indels: 10
0.73 0.13 0.13
Matches are distributed among these distances:
25 3 0.05
26 17 0.31
27 28 0.51
28 7 0.13
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (26 bp):
AAATTACTCAAATACCTCCAGTTGTA
Found at i:73922966 original size:27 final size:27
Alignment explanation
Indices: 73922932--73923007 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
73922922 CCTCCAGTTG
*
73922932 TAAAATTA-CCAAAGTACCCCCGGTTTA
1 TAAAATTACCCAAA-TACCCCCGATTTA
* * *
73922959 TAAAATTACCCAAATATCCTCGATTTG
1 TAAAATTACCCAAATACCCCCGATTTA
* *
73922986 TAAAATTATCGAAATACCCCCG
1 TAAAATTACCCAAATACCCCCG
73923008 TAAGGTAGAA
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
27 35 0.88
28 5 0.12
ACGTcount: A:0.38, C:0.25, G:0.09, T:0.28
Consensus pattern (27 bp):
TAAAATTACCCAAATACCCCCGATTTA
Found at i:73923019 original size:27 final size:27
Alignment explanation
Indices: 73922989--73924053 Score: 1379
Period size: 27 Copynumber: 39.6 Consensus size: 27
73922979 CGATTTGTAA
* *
73922989 AATTATCGAAATACCCCCGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
** * *
73923016 AATTATTGAAATACCCTTGTAAGGTAA
1 AATTACCGAAATACCCCTGTAAGGTAG
73923043 AATTACCGAAATACCCCTGT-AGAGTAG
1 AATTACCGAAATACCCCTGTAAG-GTAG
*
73923070 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
73923097 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
** *
73923124 AATTACTAAAATACCCTTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
73923151 AATTACTG-AATACCCCTAT-AGTGTAG
1 AATTACCGAAATACCCCTGTAAG-GTAG
**
73923177 AATTACTAAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
*
73923204 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
*
73923231 AATTACCAAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
73923258 AATTACCGAAATACCGCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
*
73923285 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
*
73923312 AATTACCAAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
73923339 AATTACCGAAATACCGCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
*
73923366 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
*
73923393 AATTACCAAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
73923420 AATTACCGAAATACCGCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
*
73923447 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
*
73923474 AATTACCAAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
73923501 AATTACCGAAATACCGCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
*
73923528 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
*
73923555 AATTACCAAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
73923582 AATTACCGAAATACCGCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
*
73923609 AATTACCGAAATACCCCTGTAAGGTAC
1 AATTACCGAAATACCCCTGTAAGGTAG
**
73923636 AATTATTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* * *
73923663 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
** *
73923690 AATTACTAAAATACCCTTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
73923717 AATTACTG-AATACCCCTAT-AGTGTAG
1 AATTACCGAAATACCCCTGTAAG-GTAG
**
73923743 AATTACTAAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
73923770 AATTACCGAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAAGGTAG
* * *
73923797 AATTACTGAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAAGGTAG
*
73923824 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
*
73923851 AATTACCAAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* * *
73923878 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
** *
73923905 AATTACTAAAATACCCTTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
73923932 AATTACTG-AATACCCCTAT-AGTGTAG
1 AATTACCGAAATACCCCTGTAAG-GTAG
**
73923958 AATTACTAAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
73923985 AATTACCGAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAAGGTAG
** * * *
73924012 AATTACTAAAATACCCCTATAGGGTGG
1 AATTACCGAAATACCCCTGTAAGGTAG
*
73924039 AATTACCGAGATACC
1 AATTACCGAAATACC
73924054 TTGTGGGGTA
Statistics
Matches: 927, Mismatches: 100, Indels: 22
0.88 0.10 0.02
Matches are distributed among these distances:
25 6 0.01
26 62 0.07
27 851 0.92
28 8 0.01
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAAGGTAG
Found at i:73924359 original size:27 final size:26
Alignment explanation
Indices: 73924315--73924366 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
73924305 CTCGCTGCAA
*
73924315 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
73924342 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
73924367 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:73924488 original size:100 final size:100
Alignment explanation
Indices: 73924315--73924881 Score: 1100
Period size: 100 Copynumber: 5.7 Consensus size: 100
73924305 CTCGCTGCAA
* *
73924315 TCTGGTGGCCTCGCCACATATATCTGT-TCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTG
1 TCTGGTGGCCTAGCCACA-ATATCTGTATCTAGTGACTTCGTCACAATATCTGGCAGCCTCGCTG
73924379 CAATCTGGTGGCTTCGCCACATATATATATATCTGT
65 CAATCTGGTGGCTTCGCCACATATATATATATCTGT
73924415 TCTGGTGGCCTAGCCACAATATCTGTATCTAGTGACTTCGTCACAATATCTGGCAGCCTCGCTGC
1 TCTGGTGGCCTAGCCACAATATCTGTATCTAGTGACTTCGTCACAATATCTGGCAGCCTCGCTGC
73924480 AATCTGGTGGCTTCGCCACATATATATATATCTGT
66 AATCTGGTGGCTTCGCCACATATATATATATCTGT
73924515 TCTGGTGGCCTAGCCACAATATCTGTATCTAGTGACTTCGTCACAATATCTGGCAGCCTCGCTGC
1 TCTGGTGGCCTAGCCACAATATCTGTATCTAGTGACTTCGTCACAATATCTGGCAGCCTCGCTGC
73924580 AATCTGGTGGCTTCGCCACATATATATATATCTGT
66 AATCTGGTGGCTTCGCCACATATATATATATCTGT
73924615 TCTGGTGGCCTAGCCACAATATCTGTATCTAGTGACTTCGTCACAATATCTGGCAGCCTCGCTGC
1 TCTGGTGGCCTAGCCACAATATCTGTATCTAGTGACTTCGTCACAATATCTGGCAGCCTCGCTGC
73924680 AATCTGGTGGCTTCGCCACATATATATATATCTGT
66 AATCTGGTGGCTTCGCCACATATATATATATCTGT
73924715 TCTGGTGGCCTAGCCACAATATCTGTATCTAGTGACTTCGTCACAATATCTGGCAGCCTCGCTGC
1 TCTGGTGGCCTAGCCACAATATCTGTATCTAGTGACTTCGTCACAATATCTGGCAGCCTCGCTGC
73924780 AATCTGGTGGCTTCGCCACATATATATATATCTGT
66 AATCTGGTGGCTTCGCCACATATATATATATCTGT
73924815 TCTGGTGGCCTAGCCACAATATCTGTATCTAGTGACTTCGTCACAATATCTGGCAGCCTCGCTGC
1 TCTGGTGGCCTAGCCACAATATCTGTATCTAGTGACTTCGTCACAATATCTGGCAGCCTCGCTGC
73924880 AA
66 AA
73924882 ATTCTGTGGT
Statistics
Matches: 464, Mismatches: 2, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
99 8 0.02
100 456 0.98
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (100 bp):
TCTGGTGGCCTAGCCACAATATCTGTATCTAGTGACTTCGTCACAATATCTGGCAGCCTCGCTGC
AATCTGGTGGCTTCGCCACATATATATATATCTGT
Found at i:73924998 original size:6 final size:6
Alignment explanation
Indices: 73924989--73925239 Score: 203
Period size: 6 Copynumber: 40.7 Consensus size: 6
73924979 ATTCACATTT
* *
73924989 TGATTC TGATTC TG-TTACC TGATAC TGATTC TGATTC TG-TTACC TAATTC
1 TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC TGATT--C TGATTC
* *
73925039 TGATTC TGGTTC TGATTC TGATTC TG-TTACC TGATAC TGATTC TGATTC
1 TGATTC TGATTC TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC
* * *
73925088 TG-TTACC TAATTC TGATTC TGGTTC TGATTC TGATTC TG-TTACC TGATAC
1 TGATT--C TGATTC TGATTC TGATTC TGATTC TGATTC TGATT--C TGATTC
* *
73925138 TGATTC TGATTC TG-TTACC TAATTC TGATTC TGATTC TGATTT TGATTC
1 TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC TGATTC TGATTC
* * *
73925187 TG-TCACC TGATTC TGATTC TGATTC TGATTC TCATTT TGATTC T-AGTTC
1 TGAT--TC TGATTC TGATTC TGATTC TGATTC TGATTC TGATTC TGA-TTC
73925236 TGAT
1 TGAT
73925240 AATGTTTCTT
Statistics
Matches: 198, Mismatches: 24, Indels: 46
0.74 0.09 0.17
Matches are distributed among these distances:
5 14 0.07
6 155 0.78
7 19 0.10
8 10 0.05
ACGTcount: A:0.18, C:0.19, G:0.16, T:0.48
Consensus pattern (6 bp):
TGATTC
Found at i:73925017 original size:25 final size:25
Alignment explanation
Indices: 73924989--73925176 Score: 185
Period size: 25 Copynumber: 7.6 Consensus size: 25
73924979 ATTCACATTT
*
73924989 TGATTCTGATTCTGTTACCTGATAC
1 TGATTCTGATTCTGTTACCTGATTC
*
73925014 TGATTCTGATTCTGTTACCTAATTC
1 TGATTCTGATTCTGTTACCTGATTC
*
73925039 TGATTCTGGTTCTGATT--CTGATTC
1 TGATTCTGATTCTG-TTACCTGATTC
*
73925063 TG-TTACCTGATACTGATT--CTGATTC
1 TGATT--CTGATTCTG-TTACCTGATTC
* *
73925088 TG-TTACCTAATTCTGATT--CTGGTTC
1 TGATT--CTGATTCTG-TTACCTGATTC
*
73925113 TGATTCTGATTCTGTTACCTGATAC
1 TGATTCTGATTCTGTTACCTGATTC
*
73925138 TGATTCTGATTCTGTTACCTAATTC
1 TGATTCTGATTCTGTTACCTGATTC
73925163 TGATTCTGATTCTG
1 TGATTCTGATTCTG
73925177 ATTTTGATTC
Statistics
Matches: 143, Mismatches: 14, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
23 4 0.03
24 16 0.11
25 119 0.83
26 4 0.03
ACGTcount: A:0.18, C:0.19, G:0.16, T:0.47
Consensus pattern (25 bp):
TGATTCTGATTCTGTTACCTGATTC
Found at i:73925055 original size:37 final size:37
Alignment explanation
Indices: 73925013--73925218 Score: 175
Period size: 37 Copynumber: 5.2 Consensus size: 37
73925003 TTACCTGATA
73925013 CTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTT
1 CTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTT
73925050 CTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCT-GTT
1 CTGATTCTGATTCTGTTACC---TA---ATTCTGATTCTGGTT
* * *
73925092 ACCTAATTCTGATTCTGGTT--CTGATTCTGATTCTGTTACCTGAT
1 --CTGATTCTGATTCT-GTTACCTAATTCTGATTCTG------GTT
*
73925136 ACTGATTCTGATTCTGTTACCTAATTCTGATTCTGATT
1 -CTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTT
* * * *
73925174 CTGATTTTGATTCTGTCACCTGATTCTGATTCTGATT
1 CTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTT
73925211 CTGATTCT
1 CTGATTCT
73925219 CATTTTGATT
Statistics
Matches: 139, Mismatches: 12, Indels: 36
0.74 0.06 0.19
Matches are distributed among these distances:
37 72 0.52
38 1 0.01
40 3 0.02
42 6 0.04
43 25 0.18
44 29 0.21
45 3 0.02
ACGTcount: A:0.17, C:0.19, G:0.16, T:0.48
Consensus pattern (37 bp):
CTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTT
Found at i:73925086 original size:62 final size:62
Alignment explanation
Indices: 73924989--73925239 Score: 416
Period size: 62 Copynumber: 4.1 Consensus size: 62
73924979 ATTCACATTT
73924989 TGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTTC
1 TGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTTC
73925051 TGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTTC
1 TGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTTC
*
73925113 TGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGATTC
1 TGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTTC
* * * * * *
73925175 TGATTTTGATTCTGTCACCTGATTCTGATTCTGATTCTGATT--CTCATTTTGATTCTAGTTC
1 TGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTG-TTACCTAATTCTGATTCTGGTTC
73925236 TGAT
1 TGAT
73925240 AATGTTTCTT
Statistics
Matches: 180, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
61 19 0.11
62 159 0.88
63 2 0.01
ACGTcount: A:0.18, C:0.19, G:0.16, T:0.48
Consensus pattern (62 bp):
TGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTTC
Found at i:73926314 original size:42 final size:42
Alignment explanation
Indices: 73926251--73926339 Score: 151
Period size: 42 Copynumber: 2.1 Consensus size: 42
73926241 AGCATGAGAC
73926251 TTGAACCCAAGACCTCACACACACACCTAGAACACTTAACCA
1 TTGAACCCAAGACCTCACACACACACCTAGAACACTTAACCA
* *
73926293 TTGAACCTAAGACCTCTCACACACACCTAGAACACTTAACCA
1 TTGAACCCAAGACCTCACACACACACCTAGAACACTTAACCA
*
73926335 CTGAA
1 TTGAA
73926340 GCAGATATGC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.39, C:0.36, G:0.08, T:0.17
Consensus pattern (42 bp):
TTGAACCCAAGACCTCACACACACACCTAGAACACTTAACCA
Found at i:73927496 original size:25 final size:25
Alignment explanation
Indices: 73927448--73927496 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
73927438 CGTAATTGAA
* *
73927448 ATGAAATAAATTGATTTTGTATATT
1 ATGAAATAAATTGATTATGAATATT
*
73927473 ATGAAATATATTGATTATGAATAT
1 ATGAAATAAATTGATTATGAATAT
73927497 ATGTGTATTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.12, T:0.45
Consensus pattern (25 bp):
ATGAAATAAATTGATTATGAATATT
Found at i:73927856 original size:43 final size:43
Alignment explanation
Indices: 73927771--73927854 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 43
73927761 GTGATTGATA
** *
73927771 TTGAAATAACAAAGATGAGAAATGAATATGAGATGAGAAAATG
1 TTGAAATAACAAAGATGAGAAATGAATACAAAATGAGAAAATG
** *
73927814 TTGAAATGGCAAAGATGAGAAATGATTACCAAAATGAGAAA
1 TTGAAATAACAAAGATGAGAAATGAATA-CAAAATGAGAAA
73927855 TGAAATATGA
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
43 25 0.74
44 9 0.26
ACGTcount: A:0.52, C:0.05, G:0.23, T:0.20
Consensus pattern (43 bp):
TTGAAATAACAAAGATGAGAAATGAATACAAAATGAGAAAATG
Found at i:73931889 original size:66 final size:66
Alignment explanation
Indices: 73931808--73931938 Score: 244
Period size: 66 Copynumber: 2.0 Consensus size: 66
73931798 AAAAATTTTA
*
73931808 TCGTTTCGATAGTTAATTAAGCAAAAAGGACTCAATCGCGTAAAGTGTAAAACATGTGTGCTATT
1 TCGTTTCGATAGTTAATTAAGCAAAAAGGACTAAATCGCGTAAAGTGTAAAACATGTGTGCTATT
73931873 G
66 G
*
73931874 TCGTTTCGATAGTTAATTAAGCAAAAAGGACTAAATCGTGTAAAGTGTAAAACATGTGTGCTATT
1 TCGTTTCGATAGTTAATTAAGCAAAAAGGACTAAATCGCGTAAAGTGTAAAACATGTGTGCTATT
73931939 AGTTAAGGTG
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (66 bp):
TCGTTTCGATAGTTAATTAAGCAAAAAGGACTAAATCGCGTAAAGTGTAAAACATGTGTGCTATT
G
Found at i:73932935 original size:28 final size:28
Alignment explanation
Indices: 73932904--73933003 Score: 105
Period size: 28 Copynumber: 3.6 Consensus size: 28
73932894 AGTATCGGGG
73932904 ATGGCACTTAGTGTGCGATACATCCAGA
1 ATGGCACTTAGTGTGCGATACATCCAGA
* * *
73932932 ATGGCACTTAGTGTGTGAAGTA-A-CGAGG
1 ATGGCACTTAGTGTGCG-A-TACATCCAGA
* *
73932960 ATGGCACTTAGTTTGCGAAACATCCAGA
1 ATGGCACTTAGTGTGCGATACATCCAGA
* *
73932988 ACGGCAATTAGTGTGC
1 ATGGCACTTAGTGTGC
73933004 AAGGCATCGG
Statistics
Matches: 57, Mismatches: 11, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
26 1 0.02
27 2 0.04
28 50 0.88
29 2 0.04
30 2 0.04
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGATACATCCAGA
Found at i:73932965 original size:56 final size:56
Alignment explanation
Indices: 73932879--73933002 Score: 176
Period size: 56 Copynumber: 2.2 Consensus size: 56
73932869 ATTATATGTA
** * * * *
73932879 GCACTTAACGTGTGAAGTATCGGGGATGGCACTTAGTGTGCGATACATCCAGAATG
1 GCACTTAGTGTGTGAAGTAACGAGGATGGCACTTAGTGTGCGAAACATCCAGAACG
*
73932935 GCACTTAGTGTGTGAAGTAACGAGGATGGCACTTAGTTTGCGAAACATCCAGAACG
1 GCACTTAGTGTGTGAAGTAACGAGGATGGCACTTAGTGTGCGAAACATCCAGAACG
*
73932991 GCAATTAGTGTG
1 GCACTTAGTGTG
73933003 CAAGGCATCG
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 60 1.00
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (56 bp):
GCACTTAGTGTGTGAAGTAACGAGGATGGCACTTAGTGTGCGAAACATCCAGAACG
Found at i:73933033 original size:56 final size:56
Alignment explanation
Indices: 73932902--73933038 Score: 145
Period size: 56 Copynumber: 2.4 Consensus size: 56
73932892 GAAGTATCGG
* * * * *
73932902 GGATGGCACTTAGTGTGCGATACATCCAGAATGGCACTTAGTGTGTGAAGTAACGA
1 GGATGACACTTAGTGTGCGATACATCCAGAACGGCAATTAGTGTGTCAAGCAACGA
* * * *
73932958 GGATGGCACTTAGTTTGCGAAACATCCAGAACGGCAATTAGTGTG-CAAGGCATCG-
1 GGATGACACTTAGTGTGCGATACATCCAGAACGGCAATTAGTGTGTCAA-GCAACGA
73933013 GGTATGACA-TCTAGTGTGCGATACAT
1 GG-ATGACACT-TAGTGTGCGATACAT
73933039 TGAATATTCA
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
55 5 0.07
56 63 0.93
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (56 bp):
GGATGACACTTAGTGTGCGATACATCCAGAACGGCAATTAGTGTGTCAAGCAACGA
Found at i:73933147 original size:32 final size:32
Alignment explanation
Indices: 73933111--73933179 Score: 111
Period size: 32 Copynumber: 2.2 Consensus size: 32
73933101 GTATCTGTGG
* *
73933111 AAATTGGTATAATATGGTACATGTATGTACGA
1 AAATTGGTACAATATGGTACAGGTATGTACGA
*
73933143 AAATTGGTACAATATGGTACAGGTATGTACGG
1 AAATTGGTACAATATGGTACAGGTATGTACGA
73933175 AAATT
1 AAATT
73933180 CAATTGAGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.38, C:0.07, G:0.23, T:0.32
Consensus pattern (32 bp):
AAATTGGTACAATATGGTACAGGTATGTACGA
Found at i:73938730 original size:28 final size:28
Alignment explanation
Indices: 73938698--73938787 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
73938688 TAAAAATATC
73938698 AATTTTGGATTAAATTGTGAAATGTGGA
1 AATTTTGGATTAAATTGTGAAATGTGGA
* * *
73938726 AATTTAGTGG--TACTATTGGTAAAAATGT--C
1 AATTT--TGGATTA-AATT-GT-GAAATGTGGA
73938755 AATTTTGGATTAAATTGTGAAATGTGGA
1 AATTTTGGATTAAATTGTGAAATGTGGA
73938783 AATTT
1 AATTT
73938788 AGTGGTACTA
Statistics
Matches: 47, Mismatches: 6, Indels: 18
0.66 0.08 0.25
Matches are distributed among these distances:
26 6 0.13
27 5 0.11
28 15 0.32
29 10 0.21
30 5 0.11
31 6 0.13
ACGTcount: A:0.36, C:0.02, G:0.22, T:0.40
Consensus pattern (28 bp):
AATTTTGGATTAAATTGTGAAATGTGGA
Found at i:73938757 original size:57 final size:57
Alignment explanation
Indices: 73938684--73938798 Score: 221
Period size: 57 Copynumber: 2.0 Consensus size: 57
73938674 AAAGTGAATT
73938684 TTGGTAAAAATATCAATTTTGGATTAAATTGTGAAATGTGGAAATTTAGTGGTACTA
1 TTGGTAAAAATATCAATTTTGGATTAAATTGTGAAATGTGGAAATTTAGTGGTACTA
*
73938741 TTGGTAAAAATGTCAATTTTGGATTAAATTGTGAAATGTGGAAATTTAGTGGTACTA
1 TTGGTAAAAATATCAATTTTGGATTAAATTGTGAAATGTGGAAATTTAGTGGTACTA
73938798 T
1 T
73938799 GTGTAATAAA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.36, C:0.03, G:0.22, T:0.39
Consensus pattern (57 bp):
TTGGTAAAAATATCAATTTTGGATTAAATTGTGAAATGTGGAAATTTAGTGGTACTA
Found at i:73939254 original size:28 final size:28
Alignment explanation
Indices: 73939212--73939338 Score: 112
Period size: 28 Copynumber: 4.5 Consensus size: 28
73939202 TAATTATATG
** *
73939212 TGGCACTTAACGTGCGAAGTATCGGGGA
1 TGGCACTTAGTGTGCGAAGTATCGAGGA
* * **
73939240 TGGCACTTAGTGTGCGATA-CATCCAAAA
1 TGGCACTTAGTGTGCGA-AGTATCGAGGA
*
73939268 TGGCACTTAGTGTGCGAAGTAACGAGGA
1 TGGCACTTAGTGTGCGAAGTATCGAGGA
* ** * *
73939296 TGGCACTTAGTTTGCGAAACATCCAGAA
1 TGGCACTTAGTGTGCGAAGTATCGAGGA
*
73939324 CGGCACTTAGTGTGC
1 TGGCACTTAGTGTGC
73939339 AAGGCATCGG
Statistics
Matches: 77, Mismatches: 20, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
27 1 0.01
28 75 0.97
29 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (28 bp):
TGGCACTTAGTGTGCGAAGTATCGAGGA
Found at i:73939298 original size:56 final size:56
Alignment explanation
Indices: 73939212--73939338 Score: 182
Period size: 56 Copynumber: 2.3 Consensus size: 56
73939202 TAATTATATG
** * * *
73939212 TGGCACTTAACGTGCGAAGTATCGGGGATGGCACTTAGTGTGCGATACATCCAAAA
1 TGGCACTTAGTGTGCGAAGTAACGAGGATGGCACTTAGTGTGCGAAACATCCAAAA
* *
73939268 TGGCACTTAGTGTGCGAAGTAACGAGGATGGCACTTAGTTTGCGAAACATCCAGAA
1 TGGCACTTAGTGTGCGAAGTAACGAGGATGGCACTTAGTGTGCGAAACATCCAAAA
*
73939324 CGGCACTTAGTGTGC
1 TGGCACTTAGTGTGC
73939339 AAGGCATCGG
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (56 bp):
TGGCACTTAGTGTGCGAAGTAACGAGGATGGCACTTAGTGTGCGAAACATCCAAAA
Found at i:73939346 original size:28 final size:28
Alignment explanation
Indices: 73939239--73939338 Score: 119
Period size: 28 Copynumber: 3.6 Consensus size: 28
73939229 AGTATCGGGG
* *
73939239 ATGGCACTTAGTGTGCGATACATCCAAA
1 ATGGCACTTAGTGTGCGAAACATCCAGA
** * * *
73939267 ATGGCACTTAGTGTGCGAAGTAACGAGG
1 ATGGCACTTAGTGTGCGAAACATCCAGA
*
73939295 ATGGCACTTAGTTTGCGAAACATCCAGA
1 ATGGCACTTAGTGTGCGAAACATCCAGA
*
73939323 ACGGCACTTAGTGTGC
1 ATGGCACTTAGTGTGC
73939339 AAGGCATCGG
Statistics
Matches: 57, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 57 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAACATCCAGA
Found at i:73939355 original size:56 final size:55
Alignment explanation
Indices: 73939213--73939372 Score: 164
Period size: 56 Copynumber: 2.9 Consensus size: 55
73939203 AATTATATGT
** * * *
73939213 GGCACTTAACGTGCGAAGTATCGGGGATGGCACTTAGTGTGCGATACATCCAAAAT
1 GGCACTTAGTGTGCGAAGCATC-GGGATGGCACTTAGTGTGCGAAACATCCAAAAC
* * * *
73939269 GGCACTTAGTGTGCGAAGTAACGAGGATGGCACTTAGTTTGCGAAACATCCAGAAC
1 GGCACTTAGTGTGCGAAGCATCG-GGATGGCACTTAGTGTGCGAAACATCCAAAAC
*
73939325 GGCACTTAGTGTGC-AAGGCATCGGGTATGGCA-TCTAGTGT-CGATACAT
1 GGCACTTAGTGTGCGAA-GCATCGGG-ATGGCACT-TAGTGTGCGAAACAT
73939373 TGAATATTCA
Statistics
Matches: 89, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
55 13 0.15
56 76 0.85
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (55 bp):
GGCACTTAGTGTGCGAAGCATCGGGATGGCACTTAGTGTGCGAAACATCCAAAAC
Found at i:73939451 original size:32 final size:32
Alignment explanation
Indices: 73939415--73939513 Score: 110
Period size: 32 Copynumber: 3.1 Consensus size: 32
73939405 TGAGTATGAG
*
73939415 ATTGGTACGAGATGATACAGGTATCTACGAAA
1 ATTGGTACAAGATGATACAGGTATCTACGAAA
* * *
73939447 ATTGGTACAATATGGTACAGGTATGTACGAAA
1 ATTGGTACAAGATGATACAGGTATCTACGAAA
* * * *
73939479 ATTGGT-CAAATATGGTATAGGTATGTACGAAA
1 ATTGGTAC-AAGATGATACAGGTATCTACGAAA
73939511 ATT
1 ATT
73939514 CAATTGAGTA
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
31 1 0.02
32 60 0.98
ACGTcount: A:0.37, C:0.09, G:0.24, T:0.29
Consensus pattern (32 bp):
ATTGGTACAAGATGATACAGGTATCTACGAAA
Found at i:73945493 original size:30 final size:30
Alignment explanation
Indices: 73945459--73945519 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
73945449 TCCTTAACTC
73945459 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * * *
73945489 AAACTTTTGCATATTTACACTTTTTCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
73945519 A
1 A
73945520 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:73948851 original size:27 final size:27
Alignment explanation
Indices: 73948821--73948873 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
73948811 GTGATTGATA
73948821 ATGAAATGACAAAGATG-AGAAATGAAT
1 ATGAAATGACAAA-ATGTAGAAATGAAT
* * *
73948848 ATGAGATGAGAAAATGTTGAAATGAA
1 ATGAAATGACAAAATGTAGAAATGAA
73948874 AAAGATGAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 3 0.14
27 19 0.86
ACGTcount: A:0.53, C:0.02, G:0.25, T:0.21
Consensus pattern (27 bp):
ATGAAATGACAAAATGTAGAAATGAAT
Found at i:73948883 original size:43 final size:43
Alignment explanation
Indices: 73948822--73948903 Score: 137
Period size: 43 Copynumber: 1.9 Consensus size: 43
73948812 TGATTGATAA
* *
73948822 TGAAATGACAAAGATGAGAAATGAATATGAGATGAGAAAATGT
1 TGAAATGAAAAAGATGAGAAATGAATATGAAATGAGAAAATGT
*
73948865 TGAAATGAAAAAGATGAGAAATGATTATGAAATGAGAAA
1 TGAAATGAAAAAGATGAGAAATGAATATGAAATGAGAAA
73948904 TGAAATACGA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.54, C:0.01, G:0.24, T:0.21
Consensus pattern (43 bp):
TGAAATGAAAAAGATGAGAAATGAATATGAAATGAGAAAATGT
Found at i:73950859 original size:20 final size:20
Alignment explanation
Indices: 73950836--73950873 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
73950826 AAATGGTAAT
*
73950836 CCATTTCATTTACTTATTTA
1 CCATTTCATTTACCTATTTA
73950856 CCATTTCATTTACCTATT
1 CCATTTCATTTACCTATT
73950874 CTCAACCGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.53
Consensus pattern (20 bp):
CCATTTCATTTACCTATTTA
Found at i:73968624 original size:11 final size:11
Alignment explanation
Indices: 73968608--73968634 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
73968598 TTAATTAATA
73968608 ACCTTTAAAAC
1 ACCTTTAAAAC
73968619 ACCTTTAAAAC
1 ACCTTTAAAAC
73968630 ACCTT
1 ACCTT
73968635 AAGTAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.41, C:0.30, G:0.00, T:0.30
Consensus pattern (11 bp):
ACCTTTAAAAC
Found at i:73973950 original size:93 final size:93
Alignment explanation
Indices: 73973838--73974009 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
73973828 CGCCCATAAG
* * *
73973838 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAAATCGGACTCAACTCA
*
73973903 ATGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
73973931 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAAATCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAAATCGGACTCAACTCA
73973996 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
73974010 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAAATCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:73974006 original size:46 final size:46
Alignment explanation
Indices: 73973831--73974006 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
73973821 TGTAACCCGC
* * *
73973831 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
73973877 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
73973927 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
73973970 CCATAAGTGAAATCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
73974007 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:73978752 original size:26 final size:26
Alignment explanation
Indices: 73978716--73978768 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
73978706 TCTGCACCAC
73978716 TAGCTTTTACATTCTGAAAATTTTCT
1 TAGCTTTTACATTCTGAAAATTTTCT
*
73978742 TAGCTTTTACATTCTGAAATTTTTCT
1 TAGCTTTTACATTCTGAAAATTTTCT
73978768 T
1 T
73978769 TCTCAGCTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.15, G:0.08, T:0.53
Consensus pattern (26 bp):
TAGCTTTTACATTCTGAAAATTTTCT
Found at i:73981448 original size:93 final size:93
Alignment explanation
Indices: 73981319--73981490 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
73981309 CGCCCATAAG
* *
73981319 CGAACTCGGACTCAACTCAACAAGCTCTGGCGTTCGCATCCGTAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACAAGCTCTGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73981384 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
73981412 CGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACAAGCTCTGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTC
73981476 AACGAGTTCGGATGC
65 AACGAGTTCGGATGC
73981491 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACAAGCTCTGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:73981485 original size:46 final size:46
Alignment explanation
Indices: 73981312--73981487 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
73981302 TGTAACCCGC
* * *
73981312 CCATAAGCGAACTCGGACTCAACTCAACAAGCTCTGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* * *
73981358 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
73981408 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
73981451 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
73981488 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 59 0.54
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:73981506 original size:46 final size:44
Alignment explanation
Indices: 73981363--73981506 Score: 141
Period size: 46 Copynumber: 3.1 Consensus size: 44
73981353 CGCATCCGTA
73981363 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
73981410 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
73981456 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
73981502 AGTGA
1 AGTGA
73981507 CATGTCACTT
Statistics
Matches: 80, Mismatches: 9, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 33 0.41
47 31 0.39
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:73982912 original size:50 final size:50
Alignment explanation
Indices: 73982801--73982985 Score: 228
Period size: 50 Copynumber: 3.7 Consensus size: 50
73982791 CTGGTACGCA
* * *
73982801 TAGTAGCTTGCACTTAGTACTACACATGTCACC-AATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCCGGTACACG
* * *
73982850 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCCGGTACACG
* * * * *
73982900 CAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-TTATCCGGTACACG
* * *
73982951 TAATAGCCTGCACTTAGTACTACACATGCGACCTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTA
73982986 GCTACATATA
Statistics
Matches: 115, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
49 30 0.26
50 46 0.40
51 39 0.34
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCCGGTACACG
Found at i:73982969 original size:101 final size:99
Alignment explanation
Indices: 73982802--73982985 Score: 269
Period size: 101 Copynumber: 1.8 Consensus size: 99
73982792 TGGTACGCAT
* * * *
73982802 AGTAGCTTGCACTTAGTACTACACATGTCACCAATTATCCGGTACACGTAGTAGCCTGCACTTAG
1 AGTAGCCTGCACTTAGTACTACACACGTCACCAATTATCCGGTACACATAATAGCCTGCACTTAG
*
73982867 TACTACACACGTGACCTAACTATCTGATACACGC
66 TACTACACACGCGACCTAACTATCTGATACACGC
* * *
73982901 AGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACACATAATAGCCTGCACTT
1 AGTAGCCTGCACTTAGTACTACACACGTCA-CCAA-TTATCCGGTACACATAATAGCCTGCACTT
*
73982966 AGTACTACACATGCGACCTA
64 AGTACTACACACGCGACCTA
73982986 GCTACATATA
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
99 27 0.36
100 3 0.04
101 44 0.59
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (99 bp):
AGTAGCCTGCACTTAGTACTACACACGTCACCAATTATCCGGTACACATAATAGCCTGCACTTAG
TACTACACACGCGACCTAACTATCTGATACACGC
Found at i:73994356 original size:29 final size:29
Alignment explanation
Indices: 73994316--73994468 Score: 132
Period size: 29 Copynumber: 5.3 Consensus size: 29
73994306 TAGATAATGG
*
73994316 AAAGGGATAGCTTCGGCTATTGAATATGA
1 AAAGGGATAGCTTCGGCTATCGAATATGA
* *
73994345 AAAGAGATAGCTTCGGCTATCGATTATGA
1 AAAGGGATAGCTTCGGCTATCGAATATGA
* * *
73994374 AAAGGGATAG-TGACGACCATC-AACTATGA
1 AAAGGGATAGCT-TCGGCTATCGAA-TATGA
* * * * *
73994403 AAAAGGAT-GGTGACGACCATCGAATATGA
1 AAAGGGATAGCT-TCGGCTATCGAATATGA
* * *
73994432 AAAAGGATAGCTTTGGCTATCAAATATGA
1 AAAGGGATAGCTTCGGCTATCGAATATGA
73994461 AAAGGGAT
1 AAAGGGAT
73994469 GGTTTCGACC
Statistics
Matches: 103, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
28 3 0.03
29 96 0.93
30 4 0.04
ACGTcount: A:0.39, C:0.12, G:0.25, T:0.23
Consensus pattern (29 bp):
AAAGGGATAGCTTCGGCTATCGAATATGA
Found at i:73994482 original size:29 final size:29
Alignment explanation
Indices: 73994369--73994507 Score: 127
Period size: 29 Copynumber: 4.8 Consensus size: 29
73994359 GGCTATCGAT
* ** *
73994369 TATGAAAAGGGATAGTGACGACCATCAAC
1 TATGAAAAGGGATGGTTTCGACCATCAAA
* ** *
73994398 TATGAAAAAGGATGGTGACGACCATCGAA
1 TATGAAAAGGGATGGTTTCGACCATCAAA
* * * *
73994427 TATGAAAAAGGATAGCTTT-GGCTATCAAA
1 TATGAAAAGGGAT-GGTTTCGACCATCAAA
73994456 TATGAAAAGGGATGGTTTCGACCATCAAA
1 TATGAAAAGGGATGGTTTCGACCATCAAA
* * *
73994485 TATTAAAAGGAATGGTTTTGACC
1 TATGAAAAGGGATGGTTTCGACC
73994508 GTCGTTAAAG
Statistics
Matches: 91, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
28 4 0.04
29 85 0.93
30 2 0.02
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.24
Consensus pattern (29 bp):
TATGAAAAGGGATGGTTTCGACCATCAAA
Found at i:73994521 original size:87 final size:87
Alignment explanation
Indices: 73994337--73994500 Score: 224
Period size: 87 Copynumber: 1.9 Consensus size: 87
73994327 TTCGGCTATT
* * *
73994337 GAATATG-AAAAGAGATAGCTTCGGCTATCGATTATGAAAAGGGATAGTGACGACCATCAACTAT
1 GAATATGAAAAAG-GATAGCTTCGGCTATCAAATATGAAAAGGGATAGTGACGACCATCAAATAT
73994401 GAAAAAGGATGGTGACGACCATC
65 GAAAAAGGATGGTGACGACCATC
* * **
73994424 GAATATGAAAAAGGATAGCTTTGGCTATCAAATATGAAAAGGGATGGTTTCGACCATCAAATAT-
1 GAATATGAAAAAGGATAGCTTCGGCTATCAAATATGAAAAGGGATAGTGACGACCATCAAATATG
*
73994488 TAAAAGGAATGGT
66 AAAAAGG-ATGGT
73994501 TTTGACCGTC
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
86 6 0.09
87 56 0.84
88 5 0.07
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.23
Consensus pattern (87 bp):
GAATATGAAAAAGGATAGCTTCGGCTATCAAATATGAAAAGGGATAGTGACGACCATCAAATATG
AAAAAGGATGGTGACGACCATC
Found at i:74002173 original size:56 final size:56
Alignment explanation
Indices: 74002098--74002208 Score: 204
Period size: 56 Copynumber: 2.0 Consensus size: 56
74002088 CAAAATTCAA
*
74002098 TAAATGTGAATTCTGGTTGCGAGAAGTTGGCTTTTTGGGCCATATTGTATCAGCCG
1 TAAATGTGAATTCTAGTTGCGAGAAGTTGGCTTTTTGGGCCATATTGTATCAGCCG
*
74002154 TAAATGTGAATTCTAGTTGCGAGAAGTTGGCTTTTTGGGCTATATTGTATCAGCC
1 TAAATGTGAATTCTAGTTGCGAGAAGTTGGCTTTTTGGGCCATATTGTATCAGCC
74002209 TCCAGAATTC
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.23, C:0.14, G:0.27, T:0.37
Consensus pattern (56 bp):
TAAATGTGAATTCTAGTTGCGAGAAGTTGGCTTTTTGGGCCATATTGTATCAGCCG
Found at i:74005645 original size:44 final size:42
Alignment explanation
Indices: 74005591--74005681 Score: 121
Period size: 44 Copynumber: 2.1 Consensus size: 42
74005581 ATATCATGTG
* *
74005591 AGACCGTGTCTGGGACATAGGCCTCG-ATTTGAGATTTACGTGTA
1 AGACCATGTCTGGGACATAGGCATCGTATTT--GATTT-CGTGTA
*
74005635 AGACCATGTCTGGGACATCGGCATCGTATTTGATTTCGTGTA
1 AGACCATGTCTGGGACATAGGCATCGTATTTGATTTCGTGTA
74005677 AGACC
1 AGACC
74005682 CTATCAGGGA
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
42 11 0.26
43 5 0.12
44 23 0.53
45 4 0.09
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (42 bp):
AGACCATGTCTGGGACATAGGCATCGTATTTGATTTCGTGTA
Found at i:74007183 original size:79 final size:80
Alignment explanation
Indices: 74007083--74007265 Score: 239
Period size: 79 Copynumber: 2.3 Consensus size: 80
74007073 TACTTGTTCA
* *
74007083 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* * *
74007146 ATTTAGTGAC-TCGCACC
64 ATATAGTCACTTAGCA-C
**
74007163 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
74007227 ATAGTCACTTAGCAC
66 ATAGTCACTTAGCAC
*
74007242 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
74007266 CATCATTCGA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 3 0.03
79 60 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTCACTTAGCAC
Found at i:74007265 original size:40 final size:40
Alignment explanation
Indices: 74007081--74007265 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
74007071 ACTACTTGTT
* *
74007081 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
74007121 CAAATGCCTTCGGGACTTAACCCGGATTTAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
74007161 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * *
74007200 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
74007241 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74007266 CATCATTCGA
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 80 0.64
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:74010746 original size:64 final size:64
Alignment explanation
Indices: 74010640--74010766 Score: 236
Period size: 64 Copynumber: 2.0 Consensus size: 64
74010630 GTATGCTCGA
*
74010640 GAATGTGTATCAAATGAAGCAATAATGTGCAAAAGGTTTGAAGATGGACTAAATGAAGATATCG
1 GAATCTGTATCAAATGAAGCAATAATGTGCAAAAGGTTTGAAGATGGACTAAATGAAGATATCG
*
74010704 GAATCTGTATCAAATGAAGCAATCATGTGCAAAAGGTTTGAAGATGGACTAAATGAAGATATC
1 GAATCTGTATCAAATGAAGCAATAATGTGCAAAAGGTTTGAAGATGGACTAAATGAAGATATC
74010767 TGTTTGTTAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 61 1.00
ACGTcount: A:0.42, C:0.09, G:0.24, T:0.25
Consensus pattern (64 bp):
GAATCTGTATCAAATGAAGCAATAATGTGCAAAAGGTTTGAAGATGGACTAAATGAAGATATCG
Found at i:74016091 original size:42 final size:43
Alignment explanation
Indices: 74015985--74016123 Score: 106
Period size: 42 Copynumber: 3.2 Consensus size: 43
74015975 GAAGATATCG
* * * * *
74015985 TGTAAGACCGTGTCTGGGACATAGGCCTCTATTTGAGATTTACG
1 TGTAAGACCATGTCAGGGACATAGACATCTATTT-AGATTTACA
*
74016029 TGTAAGACCATGTCTA-GGACATCGACATCGTATTT-GATTT-CA
1 TGTAAGACCATGTC-AGGGACATAGACATC-TATTTAGATTTACA
* * * * * *
74016071 TGTAAGACCCTGTCAGGGACAGAGGCATCGATACT-GAATTACA
1 TGTAAGACCATGTCAGGGACATAGACATCTAT-TTAGATTTACA
74016114 TGTAAGACCA
1 TGTAAGACCA
74016124 CGTCTGGAAC
Statistics
Matches: 76, Mismatches: 14, Indels: 11
0.75 0.14 0.11
Matches are distributed among these distances:
41 3 0.04
42 29 0.38
43 16 0.21
44 23 0.30
45 5 0.07
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (43 bp):
TGTAAGACCATGTCAGGGACATAGACATCTATTTAGATTTACA
Found at i:74018318 original size:18 final size:17
Alignment explanation
Indices: 74018292--74018346 Score: 65
Period size: 17 Copynumber: 3.2 Consensus size: 17
74018282 TGTATGGATT
74018292 GCCCATGTGGGCCCACAC
1 GCCCATGT-GGCCCACAC
* *
74018310 GCCCCTGTGGCCCACAT
1 GCCCATGTGGCCCACAC
* *
74018327 GCCCATATGGCCGACAC
1 GCCCATGTGGCCCACAC
74018344 GCC
1 GCC
74018347 TAGATTGGCC
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
17 24 0.77
18 7 0.23
ACGTcount: A:0.16, C:0.45, G:0.25, T:0.13
Consensus pattern (17 bp):
GCCCATGTGGCCCACAC
Found at i:74024199 original size:22 final size:21
Alignment explanation
Indices: 74024174--74024237 Score: 67
Period size: 25 Copynumber: 2.9 Consensus size: 21
74024164 ACTATTTCAA
74024174 TATAGTTTCAGAAAGTACTATC
1 TATAGTTTCAGAAA-TACTATC
*
74024196 TATAGTGTTTTCCGAATATACTATC
1 TATA--G-TTTCAGAA-ATACTATC
74024221 TA-AGTTTCAGAAATACT
1 TATAGTTTCAGAAATACT
74024238 TATAGGATCA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
20 5 0.14
21 7 0.19
22 5 0.14
24 2 0.06
25 16 0.44
26 1 0.03
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.39
Consensus pattern (21 bp):
TATAGTTTCAGAAATACTATC
Found at i:74025199 original size:6 final size:6
Alignment explanation
Indices: 74025172--74025210 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
74025162 CCCCAAAAAC
* *
74025172 AGATAT AGTATAC AGATTT AGATAT AGATAT AGATAT AG
1 AGATAT AG-ATAT AGATAT AGATAT AGATAT AGATAT AG
74025211 CATGCTTATC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
6 23 0.82
7 5 0.18
ACGTcount: A:0.46, C:0.03, G:0.18, T:0.33
Consensus pattern (6 bp):
AGATAT
Found at i:74027223 original size:40 final size:40
Alignment explanation
Indices: 74027144--74027320 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 40
74027134 CGGATGATAA
* *
74027144 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * * * *
74027184 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
74027224 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
74027264 CCGGGCTAAGACCCGAGGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
74027304 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
74027321 ATACTTGGGT
Statistics
Matches: 119, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.12
40 102 0.86
41 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:74030028 original size:15 final size:15
Alignment explanation
Indices: 74030008--74030036 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
74029998 TTATATATTA
74030008 AGTTATAATAATAAT
1 AGTTATAATAATAAT
74030023 AGTTATAATAATAA
1 AGTTATAATAATAA
74030037 AAAAAAAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (15 bp):
AGTTATAATAATAAT
Found at i:74030847 original size:25 final size:25
Alignment explanation
Indices: 74030799--74030847 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
74030789 CATAATTGAA
* *
74030799 ATGAAATAAATTGATTTTGTATATT
1 ATGAAATAAATTGATTATGAATATT
*
74030824 ATGAAATATATTGATTATGAATAT
1 ATGAAATAAATTGATTATGAATAT
74030848 ATGTGTATTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.12, T:0.45
Consensus pattern (25 bp):
ATGAAATAAATTGATTATGAATATT
Found at i:74044625 original size:40 final size:40
Alignment explanation
Indices: 74044581--74044838 Score: 335
Period size: 40 Copynumber: 6.5 Consensus size: 40
74044571 GCTCCTCGTT
* *
74044581 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
74044621 CAAATGCCTTCGGGACTTAACCCGGATTTTGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
74044661 CAAATGCCTTCGGGACTTAACCCGGATTTTGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
74044701 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * * *
74044741 CCAATGTCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * * *
74044780 CAAATGCCTTC-GGATCTTAATCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
74044821 CAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGGACTTA
74044839 GCCCAGACAT
Statistics
Matches: 194, Mismatches: 19, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
38 2 0.01
39 31 0.16
40 148 0.76
41 13 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:74044836 original size:119 final size:120
Alignment explanation
Indices: 74044581--74044838 Score: 344
Period size: 119 Copynumber: 2.2 Consensus size: 120
74044571 GCTCCTCGTT
* *
74044581 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* * * * *
74044646 ATTTTGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTTGTAACTCGCA
66 AATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATGGTAACTAGCA
* * *
74044701 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGTCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACTTAACCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* * *
74044764 GAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAATCCGGATATGGTCACTTAGCA
65 GAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATGGTAAC-TAGCA
74044821 CAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGGACTTA
74044839 GCCCAGACAT
Statistics
Matches: 122, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
118 3 0.02
119 62 0.51
120 55 0.45
121 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (120 bp):
CAAATGCCTTCGGGACTTAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
AATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATGGTAACTAGCA
Found at i:74059192 original size:40 final size:40
Alignment explanation
Indices: 74058928--74059185 Score: 353
Period size: 40 Copynumber: 6.5 Consensus size: 40
74058918 ATGTCTGGGC
* * * * **
74058928 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGAC
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGT
* *
74058968 TAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
*
74059008 TAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
74059047 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
74059087 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
* *
74059127 TAAGTCCCGAAGGCATTTGTGCGAGTTACTGTAA-CCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAATCCGGGT
*
74059167 TATGTCCCGAAGGCATTTG
1 TAAGTCCCGAAGGCATTTG
74059186 AACGAGTAGC
Statistics
Matches: 200, Mismatches: 13, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
39 35 0.17
40 155 0.77
41 10 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
Done.