Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 228 of 322
Found at i:75524179 original size:26 final size:26
Alignment explanation
Indices: 75524143--75524194 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
75524133 ATTGTAATTT
75524143 CCTAAGGCTTAAAAACAGACGCCTAA
1 CCTAAGGCTTAAAAACAGACGCCTAA
75524169 CCTAAGGCTTAAAAACAGACGCCTAA
1 CCTAAGGCTTAAAAACAGACGCCTAA
75524195 TTCTGTAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.27, G:0.15, T:0.15
Consensus pattern (26 bp):
CCTAAGGCTTAAAAACAGACGCCTAA
Found at i:75526060 original size:81 final size:82
Alignment explanation
Indices: 75525905--75526061 Score: 212
Period size: 82 Copynumber: 1.9 Consensus size: 82
75525895 AAAACTGAGC
* * *
75525905 AATAGCGGCGTTTCTGGTCCAAACGCCACTAAAAACTGAGCTATAGCGACATTTTTTGTTCAAAC
1 AATAGCAGCGTTTCTGGTCCAAACGCCACTAAAAACTAAGCAATAGCGACATTTTTTGTTCAAAC
**
75525970 GTCGCTAAAAACAAAGA
66 ACCGCTAAAAACAAAGA
* *
75525987 AATAGCAGCGTTT-TTGTCCAAACGCCACTAAAAAACTAAGCAATAGCGGCA-TTTTTGTTACAA
1 AATAGCAGCGTTTCTGGTCCAAACGCCACT-AAAAACTAAGCAATAGCGACATTTTTTGTT-CAA
75526050 ACACCG-TAAAAA
64 ACACCGCTAAAAA
75526062 GTTGATCTAT
Statistics
Matches: 66, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
81 29 0.44
82 37 0.56
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.24
Consensus pattern (82 bp):
AATAGCAGCGTTTCTGGTCCAAACGCCACTAAAAACTAAGCAATAGCGACATTTTTTGTTCAAAC
ACCGCTAAAAACAAAGA
Found at i:75526061 original size:41 final size:41
Alignment explanation
Indices: 75525883--75526051 Score: 171
Period size: 41 Copynumber: 4.1 Consensus size: 41
75525873 TGAGCAATTT
* * * * *
75525883 CAAATGCCACTAAAAACTGAGCAATAGCGGCGTTTCTGGTC
1 CAAACGCCACTAAAAACTAAGCAATAGCGGCATTTTTGTTC
* * *
75525924 CAAACGCCACTAAAAACTGAGCTATAGCGACATTTTTTGTT-
1 CAAACGCCACTAAAAACTAAGCAATAGCGGCA-TTTTTGTTC
* * * * * *
75525965 CAAACGTCGCTAAAAACAAAGAAATAGCAGCGTTTTTG-TC
1 CAAACGCCACTAAAAACTAAGCAATAGCGGCATTTTTGTTC
*
75526005 CAAACGCCACTAAAAAACTAAGCAATAGCGGCATTTTTGTTA
1 CAAACGCCACT-AAAAACTAAGCAATAGCGGCATTTTTGTTC
75526047 CAAAC
1 CAAAC
75526052 ACCGTAAAAA
Statistics
Matches: 102, Mismatches: 22, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
39 1 0.01
40 15 0.15
41 74 0.73
42 12 0.12
ACGTcount: A:0.37, C:0.22, G:0.17, T:0.24
Consensus pattern (41 bp):
CAAACGCCACTAAAAACTAAGCAATAGCGGCATTTTTGTTC
Found at i:75526406 original size:14 final size:15
Alignment explanation
Indices: 75526377--75526411 Score: 63
Period size: 14 Copynumber: 2.4 Consensus size: 15
75526367 TATGGTTTTC
75526377 TCTAAACCCTTAAAT
1 TCTAAACCCTTAAAT
75526392 TCTAAACCC-TAAAT
1 TCTAAACCCTTAAAT
75526406 TCTAAA
1 TCTAAA
75526412 AACATAGGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.55
15 9 0.45
ACGTcount: A:0.43, C:0.26, G:0.00, T:0.31
Consensus pattern (15 bp):
TCTAAACCCTTAAAT
Found at i:75526680 original size:21 final size:21
Alignment explanation
Indices: 75526655--75526695 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
75526645 TTAAGTTTAT
75526655 GGTTTAGGGTTT-GTTATTTTG
1 GGTTTAGGGTTTAGTT-TTTTG
75526676 GGTTTAGGGTTTAGTTTTTT
1 GGTTTAGGGTTTAGTTTTTT
75526696 AAATTTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.10, C:0.00, G:0.32, T:0.59
Consensus pattern (21 bp):
GGTTTAGGGTTTAGTTTTTTG
Found at i:75526922 original size:7 final size:7
Alignment explanation
Indices: 75526910--75526989 Score: 54
Period size: 7 Copynumber: 11.4 Consensus size: 7
75526900 ACTTAGTCTA
75526910 TAGGGTT
1 TAGGGTT
75526917 TAGGGTT
1 TAGGGTT
** *
75526924 TAGTCTA
1 TAGGGTT
* *
75526931 TAAGCTT
1 TAGGGTT
75526938 TAGGGTT
1 TAGGGTT
*
75526945 TATGGTAT
1 TAGGGT-T
75526953 T-GGGTT
1 TAGGGTT
*
75526959 TAAGGTT
1 TAGGGTT
** *
75526966 TAGTCTA
1 TAGGGTT
75526973 TAGGGTT
1 TAGGGTT
75526980 TAGGGTT
1 TAGGGTT
75526987 TAG
1 TAG
75526990 TCTATAAAAA
Statistics
Matches: 53, Mismatches: 18, Indels: 4
0.71 0.24 0.05
Matches are distributed among these distances:
6 2 0.04
7 49 0.92
8 2 0.04
ACGTcount: A:0.20, C:0.04, G:0.33, T:0.44
Consensus pattern (7 bp):
TAGGGTT
Found at i:75526926 original size:21 final size:21
Alignment explanation
Indices: 75526902--75526995 Score: 127
Period size: 21 Copynumber: 4.5 Consensus size: 21
75526892 GGTGTAAGAC
75526902 TTAGTCTATAGGGTTTAGGGT
1 TTAGTCTATAGGGTTTAGGGT
* *
75526923 TTAGTCTATAAGCTTTAGGGT
1 TTAGTCTATAGGGTTTAGGGT
* * *
75526944 TTA-TGGTATTGGGTTTAAGGT
1 TTAGT-CTATAGGGTTTAGGGT
75526965 TTAGTCTATAGGGTTTAGGGT
1 TTAGTCTATAGGGTTTAGGGT
75526986 TTAGTCTATA
1 TTAGTCTATA
75526996 AAAATTTGTG
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
20 1 0.02
21 59 0.97
22 1 0.02
ACGTcount: A:0.21, C:0.05, G:0.29, T:0.45
Consensus pattern (21 bp):
TTAGTCTATAGGGTTTAGGGT
Found at i:75527197 original size:84 final size:84
Alignment explanation
Indices: 75527099--75527260 Score: 202
Period size: 84 Copynumber: 1.9 Consensus size: 84
75527089 TTGTATTAGC
* * * * *
75527099 GGCGCATTGTAAAAAACGCCACTAAAAATATGGGAAATTGAATAAAAATG-CTGTCGTTTGAAGT
1 GGCGCATTGTAAAAAACGCCACAAAAAATATGAGAAATTAAATAAAAACGAC-ATCGTTTGAAGT
75527163 GGCGCGGTAGTGGACTTTGT
65 GGCGCGGTAGTGGACTTTGT
* * * *
75527183 GGCGC-TTAGTAAAAAATGCCGCAAAAAATATGAGAAATTAAATGAAAACGACATCGTTTTAAGT
1 GGCGCATT-GTAAAAAACGCCACAAAAAATATGAGAAATTAAATAAAAACGACATCGTTTGAAGT
*
75527247 GGCGGGGTAGTGGA
65 GGCGCGGTAGTGGA
75527261 ATTAGCGGCG
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
83 2 0.03
84 63 0.95
85 1 0.02
ACGTcount: A:0.36, C:0.12, G:0.27, T:0.24
Consensus pattern (84 bp):
GGCGCATTGTAAAAAACGCCACAAAAAATATGAGAAATTAAATAAAAACGACATCGTTTGAAGTG
GCGCGGTAGTGGACTTTGT
Found at i:75527404 original size:122 final size:123
Alignment explanation
Indices: 75527183--75527430 Score: 338
Period size: 122 Copynumber: 2.0 Consensus size: 123
75527173 TGGACTTTGT
75527183 GGCGCTTAGTAAAAAATGCCGCAAAAAATATGAGAAATTAAATGAAAACGACATCGTTTTAAGTG
1 GGCGCTTAGTAAAAAATGCCGCAAAAAATATGAGAAATTAAATGAAAACGACATCGTTTTAAGTG
* * * * *
75527248 GCGGGGTAGTGGAATTAGCGGCGTTAGGTCATAAACGCCACAATATATCAGTATTAGC
66 GCGAGGTAGTGAAATTAGCGGCGCTAGGTCATAAACACCACAATAGATCAGTATTAGC
* * * * *
75527306 GGCGCTTA-TTAAAAATGCTGCTAAAAATATGAGAAATTGAATGAAAAC-AGCGTCGTTTTAAGT
1 GGCGCTTAGTAAAAAATGCCGCAAAAAATATGAGAAATTAAATGAAAACGA-CATCGTTTTAAGT
* * ** *
75527369 GGCGAGGTAGTGAAATTAGTGGCGCTAGGTTATAAACACCGTAATAGGTCAGTATTAGC
65 GGCGAGGTAGTGAAATTAGCGGCGCTAGGTCATAAACACCACAATAGATCAGTATTAGC
75527428 GGC
1 GGC
75527431 CAAAATGACC
Statistics
Matches: 109, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
121 1 0.01
122 100 0.92
123 8 0.07
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (123 bp):
GGCGCTTAGTAAAAAATGCCGCAAAAAATATGAGAAATTAAATGAAAACGACATCGTTTTAAGTG
GCGAGGTAGTGAAATTAGCGGCGCTAGGTCATAAACACCACAATAGATCAGTATTAGC
Found at i:75530078 original size:9 final size:9
Alignment explanation
Indices: 75530055--75530092 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
75530045 TTAAAGTTTA
75530055 AATTT-CAT
1 AATTTACAT
*
75530063 AACTTACAT
1 AATTTACAT
75530072 AATTTACAT
1 AATTTACAT
*
75530081 AACTTACAT
1 AATTTACAT
75530090 AAT
1 AAT
75530093 ATATCATATC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
8 4 0.16
9 21 0.84
ACGTcount: A:0.45, C:0.16, G:0.00, T:0.39
Consensus pattern (9 bp):
AATTTACAT
Found at i:75530134 original size:27 final size:27
Alignment explanation
Indices: 75530060--75530250 Score: 164
Period size: 27 Copynumber: 7.2 Consensus size: 27
75530050 GTTTAAATTT
* *
75530060 CATAACTTACATAATTTACATAACTTA
1 CATAACTCACATAACTTACATAACTTA
* * *
75530087 CATAA-T---ATATCATATCATAACTCA
1 CATAACTCACATAACTTA-CATAACTTA
* *
75530111 CATAACTCATACAACTTACATAACTTA
1 CATAACTCACATAACTTACATAACTTA
* * * *
75530138 -ATAACTTATATGTATCATATCATAACTTA
1 CATAACTCACA--TAACTTA-CATAACTTA
75530167 CATAACTCACATAACTTACATAACTTA
1 CATAACTCACATAACTTACATAACTTA
* *
75530194 CATAACTCACAT-ACATCACATAACTCA
1 CATAACTCACATAAC-TTACATAACTTA
75530221 CATAACTCACATAACTTACATAA--TA
1 CATAACTCACATAACTTACATAACTTA
75530246 CATAA
1 CATAA
75530251 ATAGATATCA
Statistics
Matches: 133, Mismatches: 20, Indels: 24
0.75 0.11 0.14
Matches are distributed among these distances:
23 5 0.04
24 13 0.10
25 7 0.05
26 12 0.09
27 63 0.47
28 16 0.12
29 9 0.07
30 8 0.06
ACGTcount: A:0.45, C:0.23, G:0.01, T:0.31
Consensus pattern (27 bp):
CATAACTCACATAACTTACATAACTTA
Found at i:75530143 original size:8 final size:9
Alignment explanation
Indices: 75530060--75530243 Score: 148
Period size: 9 Copynumber: 20.6 Consensus size: 9
75530050 GTTTAAATTT
75530060 CATAACTTA
1 CATAACTTA
*
75530069 CATAATTTA
1 CATAACTTA
75530078 CATAACTTA
1 CATAACTTA
75530087 CATAA-TATA
1 CATAACT-TA
75530096 TCAT-A--T-
1 -CATAACTTA
*
75530102 CATAACTCA
1 CATAACTTA
*
75530111 CATAACTCA
1 CATAACTTA
* *
75530120 TACAACTTA
1 CATAACTTA
75530129 CATAACTTA
1 CATAACTTA
75530138 -ATAACTTA
1 CATAACTTA
* * *
75530146 TATGTATCATA
1 CA--TAACTTA
75530157 TCATAACTTA
1 -CATAACTTA
*
75530167 CATAACTCA
1 CATAACTTA
75530176 CATAACTTA
1 CATAACTTA
75530185 CATAACTTA
1 CATAACTTA
*
75530194 CATAACTCA
1 CATAACTTA
*
75530203 CAT-ACATCA
1 CATAAC-TTA
*
75530212 CATAACTCA
1 CATAACTTA
*
75530221 CATAACTCA
1 CATAACTTA
75530230 CATAACTTA
1 CATAACTTA
75530239 CATAA
1 CATAA
75530244 TACATAAATA
Statistics
Matches: 146, Mismatches: 17, Indels: 24
0.78 0.09 0.13
Matches are distributed among these distances:
5 3 0.02
6 1 0.01
7 1 0.01
8 11 0.08
9 114 0.78
10 10 0.07
11 5 0.03
12 1 0.01
ACGTcount: A:0.45, C:0.23, G:0.01, T:0.32
Consensus pattern (9 bp):
CATAACTTA
Found at i:75532446 original size:30 final size:29
Alignment explanation
Indices: 75532408--75532468 Score: 95
Period size: 30 Copynumber: 2.1 Consensus size: 29
75532398 ATACGTCAAT
*
75532408 CTAGCTCAAAAGATCGGAAGCCGTTGGAG
1 CTAGCTCAAAAGATCGGAAGACGTTGGAG
*
75532437 CTNAGCTCAAAGGATCGGAAGACGTTGGAG
1 CT-AGCTCAAAAGATCGGAAGACGTTGGAG
75532467 CT
1 CT
75532469 CGGATCATAC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 2 0.07
30 27 0.93
ACGTcount: A:0.30, C:0.20, G:0.31, T:0.18
Consensus pattern (29 bp):
CTAGCTCAAAAGATCGGAAGACGTTGGAG
Found at i:75535043 original size:12 final size:12
Alignment explanation
Indices: 75535026--75535051 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
75535016 AAGATCGAGG
75535026 GATGAATCTGAT
1 GATGAATCTGAT
75535038 GATGAATCTGAT
1 GATGAATCTGAT
75535050 GA
1 GA
75535052 AGAGGATGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.31
Consensus pattern (12 bp):
GATGAATCTGAT
Found at i:75539291 original size:38 final size:38
Alignment explanation
Indices: 75539249--75539339 Score: 137
Period size: 38 Copynumber: 2.4 Consensus size: 38
75539239 CGCAGCTATA
* * * * *
75539249 TGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
1 TGCTGGTATTATATCCGAGTTAAATCCCGAAGGCCTAG
75539287 TGCTGGTATTATATCCGAGTTAAATCCCGAAGGCCTAG
1 TGCTGGTATTATATCCGAGTTAAATCCCGAAGGCCTAG
75539325 TGCTGGTATTATATC
1 TGCTGGTATTATATC
75539340 TAAGTTTAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (38 bp):
TGCTGGTATTATATCCGAGTTAAATCCCGAAGGCCTAG
Found at i:75541543 original size:41 final size:43
Alignment explanation
Indices: 75541481--75541595 Score: 180
Period size: 43 Copynumber: 2.7 Consensus size: 43
75541471 TTTGTGACAA
* * *
75541481 AAAGCGCCGCTAAAGGACATGTTCTTTAGCTGCG-TT-TGGTG
1 AAAGCGCCACTAAAGGTCATGTTCTTTAGCGGCGTTTGTGGTG
*
75541522 AAAGCGTCACTAAAGGTCATGTTCTTTAGCGGCGTTTGTGGTG
1 AAAGCGCCACTAAAGGTCATGTTCTTTAGCGGCGTTTGTGGTG
75541565 AAAGCGCCACTAAAGGTCATGTTCTTTAGCG
1 AAAGCGCCACTAAAGGTCATGTTCTTTAGCG
75541596 ACATTTTTTC
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
41 30 0.45
42 2 0.03
43 35 0.52
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (43 bp):
AAAGCGCCACTAAAGGTCATGTTCTTTAGCGGCGTTTGTGGTG
Found at i:75541959 original size:15 final size:15
Alignment explanation
Indices: 75541939--75541967 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
75541929 AGTGGTTATC
75541939 ATTTTTTTTCTTCAA
1 ATTTTTTTTCTTCAA
75541954 ATTTTTTTTCTTCA
1 ATTTTTTTTCTTCA
75541968 GATGATCATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.14, G:0.00, T:0.69
Consensus pattern (15 bp):
ATTTTTTTTCTTCAA
Found at i:75544291 original size:43 final size:42
Alignment explanation
Indices: 75544196--75544313 Score: 150
Period size: 43 Copynumber: 2.8 Consensus size: 42
75544186 GACTTATGTT
*
75544196 TTACATGTAAGACCACGTCAGGGAC-GTTGGCATCGTATTTGA
1 TTACATGTAAGACCACGTCTGGGACAG-TGGCATCGTATTTGA
* * *
75544238 TTTCGTGTAAGATCC-TGTCTGGGACAGTGGCATCGATATTTGA
1 TTACATGTAAGA-CCACGTCTGGGACAGTGGCATCG-TATTTGA
*
75544281 TTACATGTAAGACCACGTCTGGGACATTGGCAT
1 TTACATGTAAGACCACGTCTGGGACAGTGGCAT
75544314 TGTACGAGCT
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
42 28 0.44
43 36 0.56
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.31
Consensus pattern (42 bp):
TTACATGTAAGACCACGTCTGGGACAGTGGCATCGTATTTGA
Found at i:75547901 original size:14 final size:14
Alignment explanation
Indices: 75547882--75547910 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
75547872 CCCAAACAAA
75547882 CTAGGATGAGCATT
1 CTAGGATGAGCATT
75547896 CTAGGATGAGCATT
1 CTAGGATGAGCATT
75547910 C
1 C
75547911 AATTGGTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (14 bp):
CTAGGATGAGCATT
Found at i:75560574 original size:13 final size:13
Alignment explanation
Indices: 75560558--75560589 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
75560548 CTCACACGGG
75560558 CGTGTCACATGGC
1 CGTGTCACATGGC
75560571 CGTGTCACATGGC
1 CGTGTCACATGGC
75560584 CGTGTC
1 CGTGTC
75560590 CCTTTGGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.12, C:0.31, G:0.31, T:0.25
Consensus pattern (13 bp):
CGTGTCACATGGC
Found at i:75572828 original size:38 final size:38
Alignment explanation
Indices: 75572781--75572941 Score: 207
Period size: 38 Copynumber: 4.2 Consensus size: 38
75572771 GCTTAAAGGT
*
75572781 CCGCAGGCTTCATGCTGGTATTATATTCGAGTTAAATC
1 CCGCAGGCTTCATGCTGGTATTATATCCGAGTTAAATC
** *
75572819 CCAAAGGCTTCGTGCTGGTATTATATCCGAGTTAAATC
1 CCGCAGGCTTCATGCTGGTATTATATCCGAGTTAAATC
* *
75572857 CCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATC
1 CCGCAGGCTTCATGCTGGTATTATATCCGAGTTAAATC
* * *
75572895 CTGCAGGCTT-AGTGCTGGTATTATATTCGAGCTTAAAGTT
1 CCGCAGGCTTCA-TGCTGGTATTATATCCGAG-TTAAA-TC
75572935 CCGCAGG
1 CCGCAGG
75572942 TTTTGTGCTG
Statistics
Matches: 107, Mismatches: 13, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
38 95 0.89
39 5 0.05
40 7 0.07
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.32
Consensus pattern (38 bp):
CCGCAGGCTTCATGCTGGTATTATATCCGAGTTAAATC
Found at i:75572867 original size:76 final size:78
Alignment explanation
Indices: 75572771--75572941 Score: 231
Period size: 76 Copynumber: 2.2 Consensus size: 78
75572761 TTGTATTCGG
* *
75572771 GCTTAAAGGT-CCGCAGGCTTCATGCTGGTATTATATTCGAGTTAAATCCCAAAGGCTTCGTGCT
1 GCTTAAA-GTCCCGCAGGCTTCATGCTGGTATTATATCCGAGTTAAATCCCAAAGGCTTAGTGCT
75572835 GGTATTATATCCGA
65 GGTATTATATCCGA
* * ***
75572849 G-TTAAA-TCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCTGCAGGCTTAGTGCTG
1 GCTTAAAGTCCCGCAGGCTTCATGCTGGTATTATATCCGAGTTAAATCCCAAAGGCTTAGTGCTG
*
75572912 GTATTATATTCGA
66 GTATTATATCCGA
*
75572925 GCTTAAAGTTCCGCAGG
1 GCTTAAAGTCCCGCAGG
75572942 TTTTGTGCTG
Statistics
Matches: 81, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
75 1 0.01
76 61 0.75
77 10 0.12
78 9 0.11
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (78 bp):
GCTTAAAGTCCCGCAGGCTTCATGCTGGTATTATATCCGAGTTAAATCCCAAAGGCTTAGTGCTG
GTATTATATCCGA
Found at i:75578832 original size:42 final size:42
Alignment explanation
Indices: 75578726--75578883 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 42
75578716 ATGTGTTATT
* *
75578726 GTGTAAGACCACGTCTGGGATGTTGGCATTG-ACTTATGATTTAC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGTA-TT-TGATTT-C
75578770 GTGTAAGACCACGT-TAGGGACGTTGGCATCGTATTTGATTTC
1 GTGTAAGACCACGTCT-GGGACGTTGGCATCGTATTTGATTTC
* ** * *
75578812 GTGTAAGATCTTGTCTGGGACAG-TGGCATCGATATTTAATTAC
1 GTGTAAGACCACGTCTGGGAC-GTTGGCATCG-TATTTGATTTC
* *
75578855 ATGTAAGACCACATCTGGGACGTTGGCAT
1 GTGTAAGACCACGTCTGGGACGTTGGCAT
75578884 TGTACGAGCT
Statistics
Matches: 96, Mismatches: 12, Indels: 13
0.79 0.10 0.11
Matches are distributed among these distances:
42 26 0.27
43 40 0.42
44 29 0.30
45 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.32
Consensus pattern (42 bp):
GTGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTTC
Found at i:75580381 original size:6 final size:6
Alignment explanation
Indices: 75580361--75580413 Score: 63
Period size: 6 Copynumber: 8.7 Consensus size: 6
75580351 TTACCTTAAA
* *
75580361 ACAGAT ACAGAAT ACAGAT ACAGAT ACAGGT ACAGAT ACA-AGT ATAGAT
1 ACAGAT ACAG-AT ACAGAT ACAGAT ACAGAT ACAGAT ACAGA-T ACAGAT
75580410 ACAG
1 ACAG
75580414 GTGCACACCT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 1 0.03
6 32 0.80
7 7 0.17
ACGTcount: A:0.49, C:0.15, G:0.19, T:0.17
Consensus pattern (6 bp):
ACAGAT
Found at i:75582239 original size:42 final size:42
Alignment explanation
Indices: 75582122--75582243 Score: 156
Period size: 43 Copynumber: 2.9 Consensus size: 42
75582112 TACCATACCA
* * **
75582122 ATGCCATATCCTAGATATGGTCTTACATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACAAGAAATCTCATATCG
* * *
75582164 ATGCCAATAGCCCA-ACTATGGTCTTACACGAAATCTTATATCG
1 ATGCC-ATATCCCAGA-TATGGTCTTACAAGAAATCTCATATCG
75582207 ATGCCATATCCCAGATATGGTCTTACAAGAAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACAAGAAATCTCA
75582244 ACTAACCTTA
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
42 33 0.49
43 35 0.51
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACAAGAAATCTCATATCG
Found at i:75586416 original size:15 final size:16
Alignment explanation
Indices: 75586393--75586422 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
75586383 TTTCACAGAA
75586393 TAGATCCATAAAAATG
1 TAGATCCATAAAAATG
75586409 TAGA-CCATAAAAAT
1 TAGATCCATAAAAAT
75586423 ATAATAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.53, C:0.13, G:0.10, T:0.23
Consensus pattern (16 bp):
TAGATCCATAAAAATG
Found at i:75595926 original size:40 final size:40
Alignment explanation
Indices: 75595833--75596088 Score: 333
Period size: 40 Copynumber: 6.4 Consensus size: 40
75595823 AAGCCAAGTA
* * *
75595833 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
75595871 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
75595911 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
75595951 CCTTCGGGACTTAGCTCGGATGTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
75595991 CCTTCGGGACTTAGCCCGGATGTAATAACACGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
75596031 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
*
75596072 CCTTTGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
75596089 AGTTATCATC
Statistics
Matches: 196, Mismatches: 16, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
38 12 0.06
39 17 0.09
40 142 0.72
41 21 0.11
42 4 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:75602600 original size:29 final size:30
Alignment explanation
Indices: 75602553--75602620 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
75602543 TGGCCCAAGA
* *
75602553 GTAAATACTCAAAATTTGAAGGATTAA-AGT
1 GTAAATA-TCAAAAGTTGAAGGACTAATAGT
*
75602583 GTAAATATGAAAAGTTGAAGGACTAATAGT
1 GTAAATATCAAAAGTTGAAGGACTAATAGT
*
75602613 GCAAATAT
1 GTAAATAT
75602621 TTTAAGGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (30 bp):
GTAAATATCAAAAGTTGAAGGACTAATAGT
Found at i:75602895 original size:8 final size:8
Alignment explanation
Indices: 75602882--75602906 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
75602872 TTTTAAATGA
75602882 TATTTTAT
1 TATTTTAT
75602890 TATTTTAT
1 TATTTTAT
75602898 TATTTTAT
1 TATTTTAT
75602906 T
1 T
75602907 TAATATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:75605071 original size:46 final size:46
Alignment explanation
Indices: 75605018--75605197 Score: 236
Period size: 46 Copynumber: 3.9 Consensus size: 46
75605008 TGTGCTCTCT
* *
75605018 GATATGAAATGTGTAAGACCATGGTTGAAAGAAACCATGGCAGCCC
1 GATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCC
* *
75605064 GATATGAAATGTGTAAGACCATGGTTGAAAGATACCGTGGCAACCT
1 GATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCC
**
75605110 GATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAT
1 GATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCC
* ** * * *
75605156 GA-AAGAAAATAAGTAAGACCATAGTTGAAAGACACTATGGCA
1 GATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
75605198 TCATGTCAAA
Statistics
Matches: 121, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 2 0.02
46 119 0.98
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
GATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCC
Found at i:75622371 original size:35 final size:35
Alignment explanation
Indices: 75622325--75622395 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
75622315 ATTGGAGATA
75622325 GTGTGATGATGCTCCGACCGGTCTCCAACCTTTAC
1 GTGTGATGATGCTCCGACCGGTCTCCAACCTTTAC
*
75622360 GTGTGATGATGCTCTGACCGGTCTCCAACCTTTAC
1 GTGTGATGATGCTCCGACCGGTCTCCAACCTTTAC
75622395 G
1 G
75622396 AGGTTTCGAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.17, C:0.30, G:0.24, T:0.30
Consensus pattern (35 bp):
GTGTGATGATGCTCCGACCGGTCTCCAACCTTTAC
Found at i:75633948 original size:41 final size:41
Alignment explanation
Indices: 75633821--75634006 Score: 243
Period size: 41 Copynumber: 4.6 Consensus size: 41
75633811 CTCGCACAAG
* * * * * *
75633821 GCCTTCGGGTCTTAACCCGGATATGGTCAC-TAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
* *
75633861 GCCTTCGGGACTTAGCCCGAATATAGTCGC-TAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
* * *
75633901 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAACACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGCTTAGCACAAAA
75633942 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
75633983 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
75634007 CATTCGAGTA
Statistics
Matches: 129, Mismatches: 14, Indels: 5
0.87 0.09 0.03
Matches are distributed among these distances:
39 3 0.02
40 57 0.44
41 66 0.51
42 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (41 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
Found at i:75656146 original size:24 final size:25
Alignment explanation
Indices: 75656104--75656152 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
75656094 ACACAAATGC
*
75656104 AGCTCTTCGTGAGCATCCTGATATG
1 AGCTCTTCATGAGCATCCTGATATG
*
75656129 AGCTCTT-ATGAGCTTCCTGATATG
1 AGCTCTTCATGAGCATCCTGATATG
75656153 GCTTGCTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 15 0.68
25 7 0.32
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.35
Consensus pattern (25 bp):
AGCTCTTCATGAGCATCCTGATATG
Found at i:75656608 original size:16 final size:17
Alignment explanation
Indices: 75656589--75656621 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
75656579 ATGATGTTAT
75656589 ATGAAATAT-TGATATA
1 ATGAAATATATGATATA
*
75656605 ATGAAATGTATGATATA
1 ATGAAATATATGATATA
75656622 TGTTTATGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATATATGATATA
Found at i:75656620 original size:17 final size:17
Alignment explanation
Indices: 75656577--75656621 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 17
75656567 AAATTCATGA
*
75656577 AAATG-ATGTTAT-ATG
1 AAATGTATGATATAATG
*
75656592 AAATAT-TGATATAATG
1 AAATGTATGATATAATG
75656608 AAATGTATGATATA
1 AAATGTATGATATA
75656622 TGTTTATGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
15 9 0.38
16 8 0.33
17 7 0.29
ACGTcount: A:0.47, C:0.00, G:0.16, T:0.38
Consensus pattern (17 bp):
AAATGTATGATATAATG
Found at i:75661144 original size:124 final size:124
Alignment explanation
Indices: 75660963--75661209 Score: 485
Period size: 124 Copynumber: 2.0 Consensus size: 124
75660953 GTGAAAGTAA
*
75660963 GAAAGAAAACAAAGAAAAAAAAAGTGTCCATCTTTCTTCATTTCCCCTTGGCTGAATGTTCTAAG
1 GAAAGAAAACAAAGAAAAAAAAAGTGTCCATCTTTCTTCATTTCCCCTTGGCCGAATGTTCTAAG
75661028 GAAGAAAGAAAAACAAGTTGTGTTCTTTGGTTCTTCTTGGCCGAATTGAAAGGAAGAAG
66 GAAGAAAGAAAAACAAGTTGTGTTCTTTGGTTCTTCTTGGCCGAATTGAAAGGAAGAAG
75661087 GAAAGAAAACAAAGAAAAAAAAAGTGTCCATCTTTCTTCATTTCCCCTTGGCCGAATGTTCTAAG
1 GAAAGAAAACAAAGAAAAAAAAAGTGTCCATCTTTCTTCATTTCCCCTTGGCCGAATGTTCTAAG
75661152 GAAGAAAGAAAAACAAGTTGTGTTCTTTGGTTCTTCTTGGCCGAATTGAAAGGAAGAA
66 GAAGAAAGAAAAACAAGTTGTGTTCTTTGGTTCTTCTTGGCCGAATTGAAAGGAAGAA
75661210 AAAGGGAGTG
Statistics
Matches: 122, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
124 122 1.00
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (124 bp):
GAAAGAAAACAAAGAAAAAAAAAGTGTCCATCTTTCTTCATTTCCCCTTGGCCGAATGTTCTAAG
GAAGAAAGAAAAACAAGTTGTGTTCTTTGGTTCTTCTTGGCCGAATTGAAAGGAAGAAG
Found at i:75664145 original size:40 final size:40
Alignment explanation
Indices: 75664090--75664612 Score: 859
Period size: 40 Copynumber: 13.1 Consensus size: 40
75664080 GTGTGCATGA
* *
75664090 GCATTTGTGCGAATTGATATATCCGGGTTAAGACCCGAAG
1 GCATTTGTGCGAACTGATATATCCGGGCTAAGACCCGAAG
*
75664130 GCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG
1 GCATTTGTGCGAACTGATATATCCGGGCTAAGACCCGAAG
*
75664170 GCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG
1 GCATTTGTGCGAACTGATATATCCGGGCTAAGACCCGAAG
*
75664210 GCATTTGTGCGAACTGATATATCCGGGCTAAGCCCCGAAG
1 GCATTTGTGCGAACTGATATATCCGGGCTAAGACCCGAAG
*
75664250 GCATTTGTGCGAACTGATATATCCGGGCTAAGCCCCGAAG
1 GCATTTGTGCGAACTGATATATCCGGGCTAAGACCCGAAG
*
75664290 GCATTTGTGCGAACTGATATATCCGGGCTAAGCCCCGAAG
1 GCATTTGTGCGAACTGATATATCCGGGCTAAGACCCGAAG
*
75664330 GCATTTGTGCGAACTGATATATCCGGGCTAAGCCCCGAAG
1 GCATTTGTGCGAACTGATATATCCGGGCTAAGACCCGAAG
*
75664370 GCATTTGTGCGAACTGATATATCCGGGCTAAGCCCCGAAG
1 GCATTTGTGCGAACTGATATATCCGGGCTAAGACCCGAAG
75664410 GCATTTGTGCGAACTGATATATCCGGGCTAAGACCCGAAG
1 GCATTTGTGCGAACTGATATATCCGGGCTAAGACCCGAAG
* *
75664450 GCATTTGTGCGAATTGATATATCCGGGATAAGACCCGAAG
1 GCATTTGTGCGAACTGATATATCCGGGCTAAGACCCGAAG
*
75664490 GCATTTGTGCGAACTGATATATCCGGGCTAAGACCCGACG
1 GCATTTGTGCGAACTGATATATCCGGGCTAAGACCCGAAG
* *
75664530 GCGTTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG
1 GCATTTGTGCGAACTGATATATCCGGGCTAAGACCCGAAG
* ** * *
75664570 GCATTCGTGCGAGTTGCTAT-TCCCGGGTTAAGACCCGAAG
1 GCATTTGTGCGAACTGATATAT-CCGGGCTAAGACCCGAAG
75664610 GCA
1 GCA
75664613 ATTGAGCTTG
Statistics
Matches: 465, Mismatches: 17, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
39 1 0.00
40 464 1.00
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
GCATTTGTGCGAACTGATATATCCGGGCTAAGACCCGAAG
Found at i:75666750 original size:40 final size:40
Alignment explanation
Indices: 75666661--75666844 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
75666651 TTGAATGCTG
* *
75666661 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
75666699 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
75666740 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
75666779 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
75666818 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
75666845 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 12, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
39 54 0.43
40 63 0.50
41 9 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:75666796 original size:79 final size:81
Alignment explanation
Indices: 75666661--75666844 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 81
75666651 TTGAATGCTG
75666661 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
75666724 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * **
75666739 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
*
75666800 ATTTGTGCGAGTTACTATA
63 ATTTGTGCGAGATACTATA
* *
75666819 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
75666845 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
78 10 0.11
79 59 0.64
80 23 0.25
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:75666866 original size:79 final size:79
Alignment explanation
Indices: 75666713--75666877 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
75666703 GGACTAAGAT
* ** *
75666713 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
75666778 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
75666792 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-C
* *
75666855 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
75666871 CCGAAGG
1 CCGAAGG
75666878 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:75695346 original size:21 final size:21
Alignment explanation
Indices: 75695299--75695351 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
75695289 TGCAAGGCAT
*
75695299 ACACGCCCGTGTGGTCCAGGG
1 ACACGCCCGTGTGGTCCAGAG
*
75695320 AGACGCCCGTGTGGTCCTA-AG
1 ACACGCCCGTGTGGTCC-AGAG
75695341 ACACGCCCGTG
1 ACACGCCCGTG
75695352 CTGCAGGCCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 27 0.96
22 1 0.04
ACGTcount: A:0.17, C:0.34, G:0.34, T:0.15
Consensus pattern (21 bp):
ACACGCCCGTGTGGTCCAGAG
Found at i:75710988 original size:31 final size:30
Alignment explanation
Indices: 75710953--75711013 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 30
75710943 CTTTAATATG
*
75710953 AACTTTGGAAAAATTACATTTTTTGCCCCTA
1 AACTTTGGAAAAATTACA-CTTTTGCCCCTA
* * *
75710984 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
75711014 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 11 0.42
31 15 0.58
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:75712438 original size:36 final size:36
Alignment explanation
Indices: 75712398--75712470 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
75712388 GCTTGTATTT
*
75712398 ACTCGTTCCACGTTCATAGTAATTCAATCATAATTA
1 ACTCGTTCCACATTCATAGTAATTCAATCATAATTA
75712434 ACTCGTTCCACATTCATAGTAATTCAATCATAATTA
1 ACTCGTTCCACATTCATAGTAATTCAATCATAATTA
75712470 A
1 A
75712471 ACACATATAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.36, C:0.22, G:0.07, T:0.36
Consensus pattern (36 bp):
ACTCGTTCCACATTCATAGTAATTCAATCATAATTA
Found at i:75714655 original size:40 final size:40
Alignment explanation
Indices: 75714600--75714683 Score: 159
Period size: 40 Copynumber: 2.1 Consensus size: 40
75714590 CCCGAAATAA
*
75714600 AATCCATAATCACTCTATCCTATTTCCACTCGGGGATCAT
1 AATCCATAATCACTCTATCCCATTTCCACTCGGGGATCAT
75714640 AATCCATAATCACTCTATCCCATTTCCACTCGGGGATCAT
1 AATCCATAATCACTCTATCCCATTTCCACTCGGGGATCAT
75714680 AATC
1 AATC
75714684 GACTGCAATA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.29, C:0.31, G:0.10, T:0.31
Consensus pattern (40 bp):
AATCCATAATCACTCTATCCCATTTCCACTCGGGGATCAT
Found at i:75719968 original size:43 final size:43
Alignment explanation
Indices: 75719887--75719999 Score: 140
Period size: 43 Copynumber: 2.6 Consensus size: 43
75719877 GATGCTACTA
* * *
75719887 TCCCAGACAGGGTCTTACACG-AGATCAATTAACGATGCCAATG
1 TCCCAGACATGGTCTTACACGTA-ATCAAATAACAATGCCAATG
* *
75719930 TCCCAGACATGGTCTTACACGTAATCTAAAT-ACAATGCCATTT
1 TCCCAGACATGGTCTTACACGTAATC-AAATAACAATGCCAATG
*
75719973 TCCCAGACATGGTCTTACATGTAATCA
1 TCCCAGACATGGTCTTACACGTAATCA
75720000 TATCTTGGTA
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
42 1 0.02
43 57 0.92
44 4 0.06
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.27
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGTAATCAAATAACAATGCCAATG
Found at i:75720533 original size:28 final size:29
Alignment explanation
Indices: 75720492--75720547 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
75720482 ATTTCATGAA
*
75720492 TTAACCCCTCAATTTACACTTTTT-TCAAT
1 TTAACCCCTCAATTGACA-TTTTTGTCAAT
*
75720521 TTAATCCCT-AATTGACATTTTTGTCAA
1 TTAACCCCTCAATTGACATTTTTGTCAA
75720548 AAATCACTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 5 0.21
28 11 0.46
29 8 0.33
ACGTcount: A:0.29, C:0.23, G:0.04, T:0.45
Consensus pattern (29 bp):
TTAACCCCTCAATTGACATTTTTGTCAAT
Found at i:75737153 original size:39 final size:40
Alignment explanation
Indices: 75737053--75737237 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
75737043 TTGAATGATG
* * *
75737053 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
** * *
75737092 ATCCGGATTAAGAT-CCGAAGGCATTTGTGTGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
75737133 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACAAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
75737172 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
75737211 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
75737238 AACGAGGAGC
Statistics
Matches: 120, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
39 34 0.28
40 77 0.64
41 9 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:75737189 original size:79 final size:81
Alignment explanation
Indices: 75737053--75737237 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
75737043 TTGAATGATG
* *
75737053 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGATTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAAAATCCGGATTAAGATCCGAAGGCATT
*
75737117 TGTGTGAGATACTA-A
66 TGTGCGAGATACTATA
* * *
75737132 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACAAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAAAATCCGGATTAAGAT-CCGAAGGCA
*
75737194 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
75737212 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
75737238 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAAAATCCGGATTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:75737268 original size:79 final size:79
Alignment explanation
Indices: 75737054--75737270 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
75737044 TGAATGATGT
** * * * *
75737054 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGATTAAGA-TCCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACAAAATCCGGGTTAA-ATTCCGAAGGCATT
* *
75737117 TGTGTGAGATACTAATT
63 TGTGCGAGATACTAATA
** * * *
75737134 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACAAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACAAAATCCGGGTTAAATTCCGAAGGCATTTGT
*
75737199 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * * *
75737213 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTACAT-CTGGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CAAAATCCGGGTTAAATTCCGAAGG
75737271 TACGTGATTT
Statistics
Matches: 113, Mismatches: 19, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
78 2 0.02
79 72 0.64
80 39 0.35
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACAAAATCCGGGTTAAATTCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:75740323 original size:20 final size:21
Alignment explanation
Indices: 75740285--75740325 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
75740275 AAATTTTATC
*
75740285 TTATAATCATTTTTGTAAAAA
1 TTATAATCATTTTTCTAAAAA
*
75740306 TTATAATGA-TTTTCTAAAAA
1 TTATAATCATTTTTCTAAAAA
75740326 CAGAACAGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (21 bp):
TTATAATCATTTTTCTAAAAA
Found at i:75746207 original size:28 final size:28
Alignment explanation
Indices: 75746174--75746383 Score: 99
Period size: 28 Copynumber: 7.4 Consensus size: 28
75746164 CCGATCTTGT
75746174 ACACACAGTGCTTGGTTACAAAACTCGC
1 ACACACAGTGCTTGGTTACAAAACTCGC
* ** * *
75746202 ACACACAGTGCCT--CAACAACCGATCTCTC
1 ACACACAGTGCTTGGTTACAA---AACTCGC
* *
75746231 ACACACAGTGCTCGGTTACAGAACTCGC
1 ACACACAGTGCTTGGTTACAAAACTCGC
* ** *
75746259 ACACACAGTGCCT--CAACAACCGATCTCGC
1 ACACACAGTGCTTGGTTACAA---AACTCGC
* **
75746288 ACACACAGTGCTCGGTTACGGAACTCGC
1 ACACACAGTGCTTGGTTACAAAACTCGC
* ** * *
75746316 ACACACAGTGCCT--CAACAACCGATCTCAC
1 ACACACAGTGCTTGGTTACAA---AACTCGC
** *
75746345 ACACACAGTGCTTGGTTACGGAACTCAC
1 ACACACAGTGCTTGGTTACAAAACTCGC
75746373 ACACACAGTGC
1 ACACACAGTGC
75746384 CTATGTTCAC
Statistics
Matches: 128, Mismatches: 39, Indels: 30
0.65 0.20 0.15
Matches are distributed among these distances:
26 9 0.07
28 62 0.48
29 50 0.39
31 7 0.05
ACGTcount: A:0.30, C:0.35, G:0.17, T:0.17
Consensus pattern (28 bp):
ACACACAGTGCTTGGTTACAAAACTCGC
Found at i:75746239 original size:57 final size:57
Alignment explanation
Indices: 75746151--75746385 Score: 364
Period size: 57 Copynumber: 4.1 Consensus size: 57
75746141 TCACATACTT
* * * *
75746151 AGTGCCCCAACAACCGATCT-TGTACACACAGTGCTTGGTTACAAAACTCGCACACAC
1 AGTGCCTCAACAACCGATCTCT-CACACACAGTGCTCGGTTACAGAACTCGCACACAC
75746208 AGTGCCTCAACAACCGATCTCTCACACACAGTGCTCGGTTACAGAACTCGCACACAC
1 AGTGCCTCAACAACCGATCTCTCACACACAGTGCTCGGTTACAGAACTCGCACACAC
* *
75746265 AGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCGCACACAC
1 AGTGCCTCAACAACCGATCTCTCACACACAGTGCTCGGTTACAGAACTCGCACACAC
* * * *
75746322 AGTGCCTCAACAACCGATCTCACACACACAGTGCTTGGTTACGGAACTCACACACAC
1 AGTGCCTCAACAACCGATCTCTCACACACAGTGCTCGGTTACAGAACTCGCACACAC
75746379 AGTGCCT
1 AGTGCCT
75746386 ATGTTCACTT
Statistics
Matches: 168, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
57 167 0.99
58 1 0.01
ACGTcount: A:0.30, C:0.35, G:0.17, T:0.18
Consensus pattern (57 bp):
AGTGCCTCAACAACCGATCTCTCACACACAGTGCTCGGTTACAGAACTCGCACACAC
Found at i:75746240 original size:29 final size:29
Alignment explanation
Indices: 75746197--75746355 Score: 178
Period size: 29 Copynumber: 5.6 Consensus size: 29
75746187 GGTTACAAAA
75746197 CTCGCACACACAGTGCCTCAACAACCGAT
1 CTCGCACACACAGTGCCTCAACAACCGAT
* **** * *
75746226 CTCTCACACACAGTG-CTCGGTTACAGAA
1 CTCGCACACACAGTGCCTCAACAACCGAT
75746254 CTCGCACACACAGTGCCTCAACAACCGAT
1 CTCGCACACACAGTGCCTCAACAACCGAT
**** * *
75746283 CTCGCACACACAGTG-CTCGGTTACGGAA
1 CTCGCACACACAGTGCCTCAACAACCGAT
75746311 CTCGCACACACAGTGCCTCAACAACCGAT
1 CTCGCACACACAGTGCCTCAACAACCGAT
*
75746340 CTCACACACACAGTGC
1 CTCGCACACACAGTGC
75746356 TTGGTTACGG
Statistics
Matches: 101, Mismatches: 27, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
28 43 0.43
29 58 0.57
ACGTcount: A:0.30, C:0.38, G:0.16, T:0.16
Consensus pattern (29 bp):
CTCGCACACACAGTGCCTCAACAACCGAT
Found at i:75747400 original size:30 final size:30
Alignment explanation
Indices: 75747364--75747423 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
75747354 ATCAATACCA
75747364 GATTTTTCTTAAAATTTCCCCTATTTCACT
1 GATTTTTCTTAAAATTTCCCCTATTTCACT
*
75747394 GATTTTTCTTAAAGTTTCCCCTATTTCACT
1 GATTTTTCTTAAAATTTCCCCTATTTCACT
75747424 TTTTGACTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.22, C:0.23, G:0.05, T:0.50
Consensus pattern (30 bp):
GATTTTTCTTAAAATTTCCCCTATTTCACT
Found at i:75752320 original size:93 final size:93
Alignment explanation
Indices: 75752208--75752378 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
75752198 GCCCATAAGT
* * * *
75752208 GAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAAGTGAACTCGGGCTCAACTCA
1 GAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
75752272 ACGAGCTCGGATGCCTAGTTACATCTCAC
65 ACGAGCTCGGATGCCTAGTTACATCTCAC
75752301 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
75752366 CGAGTTCGGATGC
66 CGAGCTCGGATGC
75752379 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:75752370 original size:46 final size:46
Alignment explanation
Indices: 75752200--75752375 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
75752190 TGTAACCCGC
* * *
75752200 CCATAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCAT
1 CCATAAATGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCAT
* * * *
75752246 CCATAAGTGAACTCGGGCTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
75752296 -C-T-CACGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
75752339 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGGA
75752376 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 20
0.76 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.58
47 27 0.25
48 1 0.01
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAATGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:75760984 original size:35 final size:35
Alignment explanation
Indices: 75760938--75761099 Score: 173
Period size: 35 Copynumber: 4.6 Consensus size: 35
75760928 AATACTCAAG
*
75760938 GTTCATTATATCATCACATATGGCCAAATATACAA
1 GTTCAATATATCATCACATATGGCCAAATATACAA
* * * **
75760973 GTACAATATATCATCATATATGACTGAATATACAA
1 GTTCAATATATCATCACATATGGCCAAATATACAA
* * * * * *
75761008 GCTCAATGA-AACATCACATGTAGTCAAATATTCAA
1 GTTCAAT-ATATCATCACATATGGCCAAATATACAA
* * *
75761043 GTTTAATATAACATCACATGTGGCCAAATATACAA
1 GTTCAATATATCATCACATATGGCCAAATATACAA
75761078 GTTCAATATATCATCACATATG
1 GTTCAATATATCATCACATATG
75761100 TACATACCTA
Statistics
Matches: 100, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
34 1 0.01
35 98 0.98
36 1 0.01
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.30
Consensus pattern (35 bp):
GTTCAATATATCATCACATATGGCCAAATATACAA
Found at i:75769023 original size:27 final size:27
Alignment explanation
Indices: 75768992--75769196 Score: 200
Period size: 27 Copynumber: 7.6 Consensus size: 27
75768982 TAAATTGTAC
*
75768992 AGCACTAACTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
75769019 TGCACTAAGTGTGCGGA-ATGAATATG-
1 AGCACTAAGTGTGC-GATTTGACTATGT
* * *
75769045 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* * *
75769073 GGCACTAAGTGTGCGAATTGACCATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
*
75769099 CGCCACTAAGTGTGCGAGTTTGACTATGT
1 AG-CACTAAGTGTGCGA-TTTGACTATGT
* *
75769128 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
75769155 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
75769182 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
75769197 GACTCAATAT
Statistics
Matches: 152, Mismatches: 19, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
26 3 0.02
27 124 0.82
28 24 0.16
29 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:75770119 original size:39 final size:39
Alignment explanation
Indices: 75770065--75770144 Score: 142
Period size: 39 Copynumber: 2.1 Consensus size: 39
75770055 TAAGAGATAA
* *
75770065 TCAGATTTTTGTGGGATAGGGCCAGAACGGTTTCTGGAT
1 TCAGATTTTAGTGGGACAGGGCCAGAACGGTTTCTGGAT
75770104 TCAGATTTTAGTGGGACAGGGCCAGAACGGTTTCTGGAT
1 TCAGATTTTAGTGGGACAGGGCCAGAACGGTTTCTGGAT
75770143 TC
1 TC
75770145 CCTGCTCCAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.21, C:0.15, G:0.33, T:0.31
Consensus pattern (39 bp):
TCAGATTTTAGTGGGACAGGGCCAGAACGGTTTCTGGAT
Found at i:75775699 original size:16 final size:16
Alignment explanation
Indices: 75775649--75775699 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
75775639 GTAGATCAGC
* *
75775649 AAATCCCGAAAAGCCA
1 AAATGCCGAAAAGCCG
*
75775665 AAATGCCGAAACA-CTG
1 AAATGCCGAAA-AGCCG
*
75775681 AAATGCTGAAAAGCCG
1 AAATGCCGAAAAGCCG
75775697 AAA
1 AAA
75775700 GTTTGGATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
15 1 0.04
16 26 0.93
17 1 0.04
ACGTcount: A:0.49, C:0.24, G:0.18, T:0.10
Consensus pattern (16 bp):
AAATGCCGAAAAGCCG
Found at i:75780896 original size:35 final size:35
Alignment explanation
Indices: 75780849--75781010 Score: 153
Period size: 35 Copynumber: 4.6 Consensus size: 35
75780839 AATACTCAAG
* *
75780849 GTTCATTATATCATCACATATGGCCAAATATACAA
1 GTTCAATATATCATCACATATGACCAAATATACAA
* * * *
75780884 GTACAATATATCATCATATATGACCGAGTATACAA
1 GTTCAATATATCATCACATATGACCAAATATACAA
* * * * * * *
75780919 GCTCAATAAAACATCACATGTAATCAAATATTCAA
1 GTTCAATATATCATCACATATGACCAAATATACAA
* * * * * *
75780954 GTTTAATATAACATCAAATGTGGCCAGATATACAA
1 GTTCAATATATCATCACATATGACCAAATATACAA
75780989 GTTCAATATATCATCACATATG
1 GTTCAATATATCATCACATATG
75781011 TACATACCTA
Statistics
Matches: 97, Mismatches: 30, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
35 97 1.00
ACGTcount: A:0.43, C:0.18, G:0.10, T:0.30
Consensus pattern (35 bp):
GTTCAATATATCATCACATATGACCAAATATACAA
Found at i:75782536 original size:27 final size:27
Alignment explanation
Indices: 75782505--75782664 Score: 180
Period size: 27 Copynumber: 6.0 Consensus size: 27
75782495 GGGCATAATC
* *
75782505 ATCATTTTACCATACAAGAGTATTACG
1 ATCATTTTACCATACAGGGGTATTACG
* *
75782532 ATCATTTTACCTTACAGGGGTATTATG
1 ATCATTTTACCATACAGGGGTATTACG
* * * *
75782559 GTCATTTTACCCTACAAGGGCATTACG
1 ATCATTTTACCATACAGGGGTATTACG
*
75782586 GTCATTTTA-CACTACAGGGGTATTACG
1 ATCATTTTACCA-TACAGGGGTATTACG
*
75782613 ATCATTTTACCCTACAGGGGTATTACG
1 ATCATTTTACCATACAGGGGTATTACG
* * *
75782640 GTCATTTTACCCTATA-GGGTATTAC
1 ATCATTTTACCATACAGGGGTATTAC
75782665 AGTAATTTTA
Statistics
Matches: 115, Mismatches: 16, Indels: 5
0.85 0.12 0.04
Matches are distributed among these distances:
26 10 0.09
27 104 0.90
28 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (27 bp):
ATCATTTTACCATACAGGGGTATTACG
Found at i:75782591 original size:54 final size:53
Alignment explanation
Indices: 75782505--75782664 Score: 214
Period size: 54 Copynumber: 3.0 Consensus size: 53
75782495 GGGCATAATC
* * * *
75782505 ATCATTTTACCATACAAGAGTATTACGATCATTTTACCTTACAGGGGTATTATG
1 ATCATTTTACCCTACAAGGGTATTACGGTCATTTTACC-TACAGGGGTATTACG
* *
75782559 GTCATTTTACCCTACAAGGGCATTACGGTCATTTTACACTACAGGGGTATTACG
1 ATCATTTTACCCTACAAGGGTATTACGGTCATTTTAC-CTACAGGGGTATTACG
* *
75782613 ATCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTATA-GGGTATTAC
1 ATCATTTTACCCTACAAGGGTATTACGGTCATTTTA-CCTACAGGGGTATTAC
75782665 AGTAATTTTA
Statistics
Matches: 94, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
53 9 0.10
54 83 0.88
55 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (53 bp):
ATCATTTTACCCTACAAGGGTATTACGGTCATTTTACCTACAGGGGTATTACG
Found at i:75782592 original size:81 final size:81
Alignment explanation
Indices: 75782493--75782675 Score: 246
Period size: 81 Copynumber: 2.3 Consensus size: 81
75782483 TACGGAACAT
* *
75782493 AAGGGCATAATCA-TCATTTTACCA-TACAAGAGTATTACGATCATTTTACCTTACAGGGGTATT
1 AAGGGCATTA-CAGTCATTTTACCACTACAAGAGTATTACGATCATTTTACCCTACAGGGGTATT
*
75782556 ATGGTCATTTTACCCTA
65 ACGGTCATTTTACCCTA
* * *
75782573 CAAGGGCATTACGGTCATTTTA-CACTACAGGGGTATTACGATCATTTTACCCTACAGGGGTATT
1 -AAGGGCATTACAGTCATTTTACCACTACAAGAGTATTACGATCATTTTACCCTACAGGGGTATT
75782637 ACGGTCATTTTACCCTA
65 ACGGTCATTTTACCCTA
* * *
75782654 TAGGGTATTACAGTAATTTTAC
1 AAGGGCATTACAGTCATTTTAC
75782676 TAACCGAGGG
Statistics
Matches: 89, Mismatches: 10, Indels: 6
0.85 0.10 0.06
Matches are distributed among these distances:
80 20 0.22
81 69 0.78
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.34
Consensus pattern (81 bp):
AAGGGCATTACAGTCATTTTACCACTACAAGAGTATTACGATCATTTTACCCTACAGGGGTATTA
CGGTCATTTTACCCTA
Found at i:75808900 original size:40 final size:40
Alignment explanation
Indices: 75808799--75808975 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
75808789 ACCCAAGCAT
*
75808799 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
* **
75808838 CTTCGAGTCTTAGCCCAAATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * **
75808878 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATGAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * * * *
75808918 CTTCGGGACATAACCCGGATATAGCAACTCACACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
75808958 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
75808976 TTGTCATCCG
Statistics
Matches: 111, Mismatches: 23, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
38 1 0.01
39 12 0.11
40 96 0.86
41 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:75814913 original size:27 final size:27
Alignment explanation
Indices: 75814842--75814973 Score: 131
Period size: 27 Copynumber: 4.9 Consensus size: 27
75814832 AAATACCACA
* *
75814842 CATAAGGTCAAAATAGTCAATTTACCAT
1 CATAAGGGCAAAATAGTCATTTTACC-T
* * *** *
75814870 -GTAGGGGCATTTTAGTCATTTTACCA
1 CATAAGGGCAAAATAGTCATTTTACCT
*
75814896 CATAAGGGCAAAACAGTCATTTTACCT
1 CATAAGGGCAAAATAGTCATTTTACCT
* * *
75814923 CATAATGGTAAAATAGTCACTTTACCT
1 CATAAGGGCAAAATAGTCATTTTACCT
*
75814950 CATAGGGGCAAAATAGTCATTTTA
1 CATAAGGGCAAAATAGTCATTTTA
75814974 TCAAATTGGG
Statistics
Matches: 80, Mismatches: 23, Indels: 3
0.75 0.22 0.03
Matches are distributed among these distances:
27 80 1.00
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (27 bp):
CATAAGGGCAAAATAGTCATTTTACCT
Found at i:75817448 original size:28 final size:28
Alignment explanation
Indices: 75817408--75817532 Score: 173
Period size: 28 Copynumber: 4.5 Consensus size: 28
75817398 CATGAGATTG
*
75817408 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAGTTTGACTATATA
75817436 GCACTAAGTGTGCGAGTTTGACTATATA
1 GCACTAAGTGTGCGAGTTTGACTATATA
* *
75817464 GCACTAAGTGTGCGAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGACTATATA
* * *
75817492 GCACTAGGTGTGCGAG-CTGATTATATA
1 GCACTAAGTGTGCGAGTTTGACTATATA
75817519 GCACTGAA-TGTGCG
1 GCACT-AAGTGTGCG
75817533 GACTTAATAT
Statistics
Matches: 89, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
27 20 0.22
28 69 0.78
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGACTATATA
Found at i:75826554 original size:24 final size:24
Alignment explanation
Indices: 75826527--75826604 Score: 111
Period size: 24 Copynumber: 3.2 Consensus size: 24
75826517 CTATCTGGAG
* *
75826527 CTTCCCAATATGGTTCTTTTTGAA
1 CTTCCCAATAAGGTTCTTTGTGAA
*
75826551 CTTCCCAAAAAGGTTCTTTGTGAA
1 CTTCCCAATAAGGTTCTTTGTGAA
* *
75826575 CTTCCCGACAAGGTTCTTTGTGAA
1 CTTCCCAATAAGGTTCTTTGTGAA
75826599 CTTCCC
1 CTTCCC
75826605 GATTATGGTT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 49 1.00
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (24 bp):
CTTCCCAATAAGGTTCTTTGTGAA
Found at i:75826672 original size:23 final size:24
Alignment explanation
Indices: 75826646--75826699 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
75826636 AGCCCAGATA
* *
75826646 AGCTTCTCGATAT-GCTCTTTATG
1 AGCTTCTCGAAATGGCTCTATATG
* *
75826669 AGCTTCCCGAAATGGCTCTATGTG
1 AGCTTCTCGAAATGGCTCTATATG
75826693 AGCTTCT
1 AGCTTCT
75826700 GGTTACAAGG
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 11 0.44
24 14 0.56
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.37
Consensus pattern (24 bp):
AGCTTCTCGAAATGGCTCTATATG
Found at i:75829655 original size:25 final size:26
Alignment explanation
Indices: 75829627--75829677 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
75829617 GAGCATCTCG
*
75829627 ATTAAA-GGTTCTTTGTGAACTTCCC
1 ATTAAATGGCTCTTTGTGAACTTCCC
*
75829652 ATTAAATTGGCTCTTTGTGAGCTTCC
1 ATTAAA-TGGCTCTTTGTGAACTTCC
75829678 TGATAGTGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 6 0.27
27 16 0.73
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.41
Consensus pattern (26 bp):
ATTAAATGGCTCTTTGTGAACTTCCC
Found at i:75834028 original size:5 final size:5
Alignment explanation
Indices: 75834018--75834045 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
75834008 ACTAACTGTA
75834018 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
75834046 GAACACACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:75842913 original size:69 final size:69
Alignment explanation
Indices: 75842836--75843110 Score: 532
Period size: 69 Copynumber: 4.0 Consensus size: 69
75842826 AAGTTTGTTT
* *
75842836 TGCATAAGAAAGAATTATAGCCGCTCATAATTATTTACCAATTTACACAAACATTAGAACAATAT
1 TGCATAAGAAAGAATCATAGCCACTCATAATTATTTACCAATTTACACAAACATTAGAACAATAT
75842901 ATGC
66 ATGC
75842905 TGCATAAGAAAGAATCATAGCCACTCATAATTATTTACCAATTTACACAAACATTAGAACAATAT
1 TGCATAAGAAAGAATCATAGCCACTCATAATTATTTACCAATTTACACAAACATTAGAACAATAT
75842970 ATGC
66 ATGC
75842974 TGCATAAGAAAGAATCATAGCCACTCATAATTATTTACCAATTTACACAAACATTAGAACAATAT
1 TGCATAAGAAAGAATCATAGCCACTCATAATTATTTACCAATTTACACAAACATTAGAACAATAT
75843039 ATGC
66 ATGC
75843043 TGCATAAGAAAGAATCATAGCCACTCATAATTATTTACCAATTTACACAAACATTAGAACAATAT
1 TGCATAAGAAAGAATCATAGCCACTCATAATTATTTACCAATTTACACAAACATTAGAACAATAT
75843108 ATG
66 ATG
75843111 TACATGTACC
Statistics
Matches: 204, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 204 1.00
ACGTcount: A:0.45, C:0.18, G:0.09, T:0.28
Consensus pattern (69 bp):
TGCATAAGAAAGAATCATAGCCACTCATAATTATTTACCAATTTACACAAACATTAGAACAATAT
ATGC
Found at i:75846707 original size:39 final size:40
Alignment explanation
Indices: 75846653--75846790 Score: 181
Period size: 40 Copynumber: 3.5 Consensus size: 40
75846643 AAACCAAGTA
* * * *
75846653 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTAGCACAAATG
* *
75846692 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
75846732 CCTTCGGGACTTAGCCCGGATTTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
75846772 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
75846791 TTATCATCCG
Statistics
Matches: 88, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 13 0.15
40 75 0.85
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:75846730 original size:40 final size:40
Alignment explanation
Indices: 75846686--75846794 Score: 184
Period size: 40 Copynumber: 2.7 Consensus size: 40
75846676 GCTACTTGCT
*
75846686 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTAGCA
*
75846726 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTAGCA
75846766 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
75846795 CATCCGAATA
Statistics
Matches: 65, Mismatches: 2, Indels: 4
0.92 0.03 0.06
Matches are distributed among these distances:
39 2 0.03
40 61 0.94
41 2 0.03
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTAGCA
Found at i:75856150 original size:40 final size:40
Alignment explanation
Indices: 75856095--75856282 Score: 331
Period size: 40 Copynumber: 4.7 Consensus size: 40
75856085 GAGCATTGGA
75856095 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
75856135 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
75856175 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
75856215 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
75856255 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
75856283 ATGTGTTTGC
Statistics
Matches: 141, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 141 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:75858683 original size:40 final size:39
Alignment explanation
Indices: 75858616--75858743 Score: 177
Period size: 40 Copynumber: 3.2 Consensus size: 39
75858606 CCTTCAGAAT
* *
75858616 TTAG-CCGGATATAGCTACTTGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-TACTAGCACAAATGCCTTCGGGAC
*
75858655 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGT-ACTAGCACAAATGCCTTCGGGAC
* *
75858695 TTAGCCCGGATTTAGTCACTAGCACAAATGCCTTCGAGAC
1 TTAGCCCGGATATAGT-ACTAGCACAAATGCCTTCGGGAC
75858735 TTAGCCCGG
1 TTAGCCCGG
75858744 TTATCATCCG
Statistics
Matches: 81, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 5 0.06
40 76 0.94
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAGTACTAGCACAAATGCCTTCGGGAC
Found at i:75864572 original size:46 final size:46
Alignment explanation
Indices: 75864522--75864697 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
75864512 TGGTTGAGCA
75864522 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75864568 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
75864613 TATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGGACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75864661 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75864698 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75864680 original size:93 final size:93
Alignment explanation
Indices: 75864521--75864690 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 93
75864511 ATGGTTGAGC
* *
75864521 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTG
75864586 AGTCCGAGTTCGTGAGATGTAACTAGGT
66 AGTCCGAGTTCGTGAGATGTAACTAGGT
* *
75864614 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGGACGCCCGAGCTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTG
75864679 AGTCCGAGTTCG
66 AGTCCGAGTTCG
75864691 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (93 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTG
AGTCCGAGTTCGTGAGATGTAACTAGGT
Found at i:75866355 original size:33 final size:33
Alignment explanation
Indices: 75866313--75866375 Score: 126
Period size: 33 Copynumber: 1.9 Consensus size: 33
75866303 TACTGGTACT
75866313 ATTGTCTTTGGTTTTAAATAAAATATTGTTACC
1 ATTGTCTTTGGTTTTAAATAAAATATTGTTACC
75866346 ATTGTCTTTGGTTTTAAATAAAATATTGTT
1 ATTGTCTTTGGTTTTAAATAAAATATTGTT
75866376 GTAATATTGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.30, C:0.06, G:0.13, T:0.51
Consensus pattern (33 bp):
ATTGTCTTTGGTTTTAAATAAAATATTGTTACC
Found at i:75868309 original size:15 final size:15
Alignment explanation
Indices: 75868289--75868323 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
75868279 ACTTTCTTTA
75868289 CTTCTCATTTTCTAC
1 CTTCTCATTTTCTAC
75868304 CTTCTCATTTTCTAC
1 CTTCTCATTTTCTAC
75868319 CTTCT
1 CTTCT
75868324 TCTTTACTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.11, C:0.34, G:0.00, T:0.54
Consensus pattern (15 bp):
CTTCTCATTTTCTAC
Found at i:75880352 original size:37 final size:37
Alignment explanation
Indices: 75880302--75880380 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
75880292 TTATTACGAA
* *
75880302 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
75880339 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
75880376 GTCTT
1 GTCTT
75880381 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:75880577 original size:47 final size:47
Alignment explanation
Indices: 75880499--75880589 Score: 101
Period size: 47 Copynumber: 1.9 Consensus size: 47
75880489 CCCTTCGGGA
* * * * * * *
75880499 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75880546 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
75880590 TATATACACT
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
47 35 1.00
ACGTcount: A:0.25, C:0.33, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75880594 original size:35 final size:35
Alignment explanation
Indices: 75880554--75880624 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
75880544 GCCCTGTCAC
75880554 ATATATACACTTTCACATTCATCACATCGGCCATT
1 ATATATACACTTTCACATTCATCACATCGGCCATT
*
75880589 ATATATACACTTTCACATTCATCACATCGGCTATT
1 ATATATACACTTTCACATTCATCACATCGGCCATT
75880624 A
1 A
75880625 GGCCTTATCA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (35 bp):
ATATATACACTTTCACATTCATCACATCGGCCATT
Found at i:75880651 original size:82 final size:83
Alignment explanation
Indices: 75880514--75880767 Score: 303
Period size: 82 Copynumber: 2.9 Consensus size: 83
75880504 CACATTTATG
* * * * * * *
75880514 CACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
75880579 ATCGGCCATTAT-ATATA
66 ATCGGCCATTATCATATA
*
75880596 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
*
75880661 ATCGGCTATTAGGCCTTATCACACATATA
66 ATCGGC-------CATTAT----CATATA
75880690 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATC
75880755 ACATCGGCCATTA
64 ACATCGGCCATTA
75880768 GGCCTTATCA
Statistics
Matches: 147, Mismatches: 11, Indels: 21
0.82 0.06 0.12
Matches are distributed among these distances:
82 63 0.43
89 9 0.06
94 44 0.30
96 31 0.21
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (83 bp):
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
ATCGGCCATTATCATATA
Found at i:75880689 original size:49 final size:47
Alignment explanation
Indices: 75880589--75880790 Score: 359
Period size: 47 Copynumber: 4.3 Consensus size: 47
75880579 ATCGGCCATT
*
75880589 ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
75880636 ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
75880683 ACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
75880730 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 --ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
75880779 ATATATACACTT
1 ATATATACACTT
75880791 CATCGGCTAT
Statistics
Matches: 150, Mismatches: 3, Indels: 4
0.96 0.02 0.03
Matches are distributed among these distances:
47 104 0.69
49 46 0.31
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (47 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:75880768 original size:96 final size:94
Alignment explanation
Indices: 75880591--75880790 Score: 355
Period size: 96 Copynumber: 2.1 Consensus size: 94
75880581 CGGCCATTAT
*
75880591 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTC
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTC
*
75880656 ATCACATCGGCTATTAGGCCTTATCACAC
66 ATCACATCGGCCATTAGGCCTTATCACAC
75880685 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACAT
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACAT
*
75880750 TCATCACATCGGCCATTAGGCCTTATCACAT
64 TCATCACATCGGCCATTAGGCCTTATCACAC
75880781 ATATACACTT
1 ATATACACTT
75880791 CATCGGCTAT
Statistics
Matches: 101, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
94 44 0.44
96 57 0.56
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.33
Consensus pattern (94 bp):
ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTC
ATCACATCGGCCATTAGGCCTTATCACAC
Found at i:75880796 original size:35 final size:35
Alignment explanation
Indices: 75880756--75880825 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
75880746 ACATTCATCA
*
75880756 CATCGGCCATTAGGCCTTATCACATATATACACTT
1 CATCGGCCATTAGGCCTTATCACACATATACACTT
*
75880791 CATCGGCTATTAGGCCTTATCACACATATACACTT
1 CATCGGCCATTAGGCCTTATCACACATATACACTT
75880826 TCTTGGCTGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.29, C:0.29, G:0.11, T:0.31
Consensus pattern (35 bp):
CATCGGCCATTAGGCCTTATCACACATATACACTT
Found at i:75880797 original size:178 final size:174
Alignment explanation
Indices: 75880499--75880827 Score: 423
Period size: 178 Copynumber: 1.9 Consensus size: 174
75880489 CCCTTCGGGA
** * * * * *
75880499 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACACATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
*
75880564 TTTCACATTCATCACATCGGCCATTATATATACACTTTCACATTCATCACATCGGCTATTAGGCC
66 TTTCACATTCATCACATCGGCC--TATATAGACACTTTCACATTCATCACATCGGCTATTAGGCC
*
75880629 TTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
129 TTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
75880675 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCAC--ATATATAC
*
75880740 ACTTTCACATTCATCACATCGGCC-AT-TAGGC-CTTATCACATAT-ATACACTTCATCGGCTAT
64 ACTTTCACATTCATCACATCGGCCTATATAGACACTT-TCACAT-TCAT-CA---CATCGGCTAT
75880801 TAGGCCTTATCACACATATACACTTTC
123 TAGGCCTTATCACACATATACACTTTC
75880828 TTGGCTGAAT
Statistics
Matches: 132, Mismatches: 13, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
173 3 0.02
174 11 0.08
175 5 0.04
176 45 0.34
178 68 0.52
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (174 bp):
CTTATCACACATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCTATATAGACACTTTCACATTCATCACATCGGCTATTAGGCCTT
ATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:75882226 original size:13 final size:13
Alignment explanation
Indices: 75882208--75882232 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75882198 TACTAAATTT
75882208 TCATGGATTCAAA
1 TCATGGATTCAAA
75882221 TCATGGATTCAA
1 TCATGGATTCAA
75882233 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:75887082 original size:17 final size:17
Alignment explanation
Indices: 75887060--75887092 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
75887050 TTGAATTGGG
*
75887060 TTGAGAAATTTATTTAA
1 TTGAGAAATTAATTTAA
75887077 TTGAGAAATTAATTTA
1 TTGAGAAATTAATTTA
75887093 TCTAATTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.45
Consensus pattern (17 bp):
TTGAGAAATTAATTTAA
Found at i:75889548 original size:48 final size:46
Alignment explanation
Indices: 75889382--75889556 Score: 169
Period size: 46 Copynumber: 3.7 Consensus size: 46
75889372 TGATATGTGT
*
75889382 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATT-ATG---AGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAG---CATTGA-GAAAAAA
* * * * *
75889428 GCCAGTGTAAGAAATGTCTAGGACATGCATCAGCATTGAGACAAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGAAAAAA
* *
75889474 GCTAGTGTAAGACATGTCTGGCACATGCATCAGCCTTGAGAAATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGAAA-A-AA
* *
75889522 GCTAGTGTAAGACCTGTTTGGGACATGGCATCAGC
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCAGC
75889557 TTGTTGAGTG
Statistics
Matches: 109, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
46 70 0.64
47 1 0.01
48 24 0.22
49 8 0.07
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGAAAAAA
Found at i:75889639 original size:49 final size:49
Alignment explanation
Indices: 75889387--75889743 Score: 187
Period size: 49 Copynumber: 7.6 Consensus size: 49
75889377 TGTGTGCTAG
* * * *
75889387 TGTAAGACATGTCTGGGACAT-GCATCAGCCAC-AT-TATGAGAGCCAG
1 TGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATGTATGAAAGCCAA
** * * * * * *
75889433 TGTAAGAAATGTCTAGGACAT-GCATCAGCATTGA-G-A-CAAGAGCTAG
1 TGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATGTATGAA-AGCCAA
* * * * * *
75889479 TGTAAGACATGTCTGGCACAT-GCATCAGCCTTGA-GAAAT-ACAAGCTAG
1 TGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATG-TATGA-AAGCCAA
* ** * *
75889527 TGTAAGACCTGTTTGGGACATGGCATCAG-CT---TGT-TGAGTGTCAG
1 TGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATGTATGAAAGCCAA
* *
75889571 TGGAAGACCTGTCTGGGACATGGCATCATCAC-CGATAG-ATGAAAGCCAA
1 TGTAAGACCTGTCTGGGACATGGCATCAGC-CTCGAT-GTATGAAAGCCAA
* * * * * *
75889620 TGTAAGACCTGTCTAGGACACGACATCGGCCTCGATGTATGAAAGTCAG
1 TGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATGTATGAAAGCCAA
* * ** *
75889669 TGTAAGACCTGTCTGGGACATGGCATC-GACTTTGATG--TGCTAGCCAG
1 TGTAAGACCTGTCTGGGACATGGCATCAG-CCTCGATGTATGAAAGCCAA
75889716 TGTAAGACCATGTCTGGGACATGGCATC
1 TGTAAGACC-TGTCTGGGACATGGCATC
75889744 GACATTTTAT
Statistics
Matches: 247, Mismatches: 43, Indels: 40
0.75 0.13 0.12
Matches are distributed among these distances:
44 30 0.12
45 2 0.01
46 66 0.27
47 17 0.07
48 50 0.20
49 82 0.33
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (49 bp):
TGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATGTATGAAAGCCAA
Found at i:75893029 original size:28 final size:28
Alignment explanation
Indices: 75892985--75893043 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
75892975 TTTGTTAATT
* *
75892985 GTTAACTAATCTATCTTGGGGGAGTGGA
1 GTTAACTAATCTATCTTGGGGCAGTGAA
*
75893013 GTTAACTAATCTGTCTTGGGGCAGTGAA
1 GTTAACTAATCTATCTTGGGGCAGTGAA
75893041 GTT
1 GTT
75893044 TTTGTTGTTC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.24, C:0.12, G:0.31, T:0.34
Consensus pattern (28 bp):
GTTAACTAATCTATCTTGGGGCAGTGAA
Found at i:75895749 original size:82 final size:82
Alignment explanation
Indices: 75895612--75895775 Score: 301
Period size: 82 Copynumber: 2.0 Consensus size: 82
75895602 TGAACTTACC
* *
75895612 TTGATATTAAAACGGCCATTTTACCAACTTTCCCAATTTTCGATTTTTCTCTCATTCTAGGTTCA
1 TTGATATTAAAACGACCATTTTACCAACTTTCCCAATTTTCAATTTTTCTCTCATTCTAGGTTCA
*
75895677 AATCTCGTTTTCTGGGA
66 AATCTCGTTTTCCGGGA
75895694 TTGATATTAAAACGACCATTTTACCAACTTTCCCAATTTTCAATTTTTCTCTCATTCTAGGTTCA
1 TTGATATTAAAACGACCATTTTACCAACTTTCCCAATTTTCAATTTTTCTCTCATTCTAGGTTCA
75895759 AATCTCGTTTTCCGGGA
66 AATCTCGTTTTCCGGGA
75895776 CCTAAAACAT
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
82 79 1.00
ACGTcount: A:0.24, C:0.23, G:0.11, T:0.42
Consensus pattern (82 bp):
TTGATATTAAAACGACCATTTTACCAACTTTCCCAATTTTCAATTTTTCTCTCATTCTAGGTTCA
AATCTCGTTTTCCGGGA
Found at i:75895869 original size:30 final size:30
Alignment explanation
Indices: 75895835--75895895 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
75895825 TCCTTAACTC
75895835 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
75895865 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
75895895 A
1 A
75895896 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:75896066 original size:81 final size:81
Alignment explanation
Indices: 75895967--75896122 Score: 285
Period size: 81 Copynumber: 1.9 Consensus size: 81
75895957 CTTCTATGGC
*
75895967 AACATCAAATTCTCACTCTAACATATACTTATGACTATTAGGTATTTTTACTAATTAAGCCCTTT
1 AACATCAAATTCTCACTCTAACATATACTTATGACTATTAGGTATTTTTACCAATTAAGCCCTTT
*
75896032 TGCTCGTTTTTACTTA
66 TACTCGTTTTTACTTA
*
75896048 AACATCAAATTCTCACTCTAACATATACTTATGACTATTAGGTATTTTTACCGATTAAGCCCTTT
1 AACATCAAATTCTCACTCTAACATATACTTATGACTATTAGGTATTTTTACCAATTAAGCCCTTT
75896113 TACTCGTTTT
66 TACTCGTTTT
75896123 CACTAAAAAC
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
81 72 1.00
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (81 bp):
AACATCAAATTCTCACTCTAACATATACTTATGACTATTAGGTATTTTTACCAATTAAGCCCTTT
TACTCGTTTTTACTTA
Found at i:75910722 original size:16 final size:16
Alignment explanation
Indices: 75910684--75910722 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
75910674 TCCAAAAAAA
*
75910684 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
75910700 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
75910716 AATAACT
1 AAAAACT
75910723 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:75910970 original size:30 final size:30
Alignment explanation
Indices: 75910880--75910975 Score: 147
Period size: 30 Copynumber: 3.2 Consensus size: 30
75910870 TAGGTACAAG
75910880 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* * * *
75910910 AGGTAGTGGAGTAAGTGTAGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
*
75910940 TGGTGGTGGAGCAATTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
75910970 TGGTGG
1 TGGTGG
75910976 CGGCAAAGGC
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 57 1.00
ACGTcount: A:0.19, C:0.05, G:0.48, T:0.28
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:75914511 original size:46 final size:46
Alignment explanation
Indices: 75914444--75914571 Score: 211
Period size: 46 Copynumber: 2.8 Consensus size: 46
75914434 TGTAACCCGC
* * * *
75914444 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
75914490 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
*
75914536 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
75914572 ATGCTCAACC
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
Found at i:75917558 original size:29 final size:31
Alignment explanation
Indices: 75917504--75917568 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 31
75917494 TATAGTTTAT
* *
75917504 ATTTTTATAATTTTTAAAGGATTAAATTA-A
1 ATTTTTATAATTTTTAAAGGACTAAAGTATA
* *
75917534 ATTTTTATAA-TTTTAGAGGGCTAAAGTATA
1 ATTTTTATAATTTTTAAAGGACTAAAGTATA
75917564 ATTTT
1 ATTTT
75917569 AACTTTACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 14 0.47
30 16 0.53
ACGTcount: A:0.38, C:0.02, G:0.11, T:0.49
Consensus pattern (31 bp):
ATTTTTATAATTTTTAAAGGACTAAAGTATA
Found at i:75917569 original size:29 final size:30
Alignment explanation
Indices: 75917501--75917569 Score: 70
Period size: 29 Copynumber: 2.3 Consensus size: 30
75917491 TTTTATAGTT
* * *
75917501 TATATTTTTATAATTTTTAAAGGATTAAAT
1 TATAATTTTATAATTTTTAAAGGACTAAAG
* *
75917531 TA-AATTTTTATAA-TTTTAGAGGGCTAAAG
1 TATAA-TTTTATAATTTTTAAAGGACTAAAG
75917560 TATAATTTTA
1 TATAATTTTA
75917570 ACTTTACTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
29 20 0.62
30 12 0.38
ACGTcount: A:0.39, C:0.01, G:0.10, T:0.49
Consensus pattern (30 bp):
TATAATTTTATAATTTTTAAAGGACTAAAG
Found at i:75926019 original size:49 final size:49
Alignment explanation
Indices: 75925953--75926199 Score: 289
Period size: 49 Copynumber: 5.0 Consensus size: 49
75925943 TAGCAAAAGC
* * * * *
75925953 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
75926002 TATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACTAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
** *
75926051 TATCTGGTACACGTAGTAGCCTGCAGGTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * *
75926101 CATTTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
* * * * *
75926152 T-TCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
75926200 AGATCATTCG
Statistics
Matches: 167, Mismatches: 28, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
48 3 0.02
49 85 0.51
50 76 0.46
51 2 0.01
52 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:75929784 original size:3 final size:3
Alignment explanation
Indices: 75929776--75929814 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
75929766 GCATTGGCTA
* *
75929776 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTA TTG TCG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
75929815 ATGATTCCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.03, C:0.03, G:0.31, T:0.64
Consensus pattern (3 bp):
TTG
Found at i:75937595 original size:45 final size:44
Alignment explanation
Indices: 75937531--75937639 Score: 121
Period size: 44 Copynumber: 2.5 Consensus size: 44
75937521 TCTGAACTTA
* *
75937531 TTGAGTTGGTCTGGGTTCATGATATATATG-AGGCATCCGAGCTAG
1 TTGAGTTGGTCTGAGTTCAT--TATAGATGCAGGCATCCGAGCTAG
* * *
75937576 TTGAGTTGGTCTGAGTTCATTATGGATGCGGGCATCCGAGCTCG
1 TTGAGTTGGTCTGAGTTCATTATAGATGCAGGCATCCGAGCTAG
** *
75937620 TTCTGTTGGTCCGAGTTCAT
1 TTGAGTTGGTCTGAGTTCAT
75937640 AATGGATGTG
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
43 6 0.11
44 30 0.55
45 19 0.35
ACGTcount: A:0.17, C:0.17, G:0.31, T:0.35
Consensus pattern (44 bp):
TTGAGTTGGTCTGAGTTCATTATAGATGCAGGCATCCGAGCTAG
Found at i:75937628 original size:44 final size:44
Alignment explanation
Indices: 75937562--75937647 Score: 127
Period size: 44 Copynumber: 2.0 Consensus size: 44
75937552 ATATATATGA
* * *
75937562 GGCATCCGAGCTAGTTGAGTTGGTCTGAGTTCATTATGGATGCG
1 GGCATCCGAGCTAGTTCAGTTGGTCCGAGTTCATAATGGATGCG
* *
75937606 GGCATCCGAGCTCGTTCTGTTGGTCCGAGTTCATAATGGATG
1 GGCATCCGAGCTAGTTCAGTTGGTCCGAGTTCATAATGGATG
75937648 TGATACATGT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.17, C:0.19, G:0.33, T:0.31
Consensus pattern (44 bp):
GGCATCCGAGCTAGTTCAGTTGGTCCGAGTTCATAATGGATGCG
Found at i:75942034 original size:46 final size:45
Alignment explanation
Indices: 75941967--75942142 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 45
75941957 ATATTTGGGA
75941967 TCCGAACTCGTTGAGTTGAGTCCGAGTT-GACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGACTTATGGATG-GAA-G
*** * *
75942013 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGACTTATG-GA-T-GGAAG
* * *
75942060 TCTGAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTGTGGATGGGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGACTTATGGAT-GGAA-G
* *
75942106 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCG-CTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGACTTATGG
75942143 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
44 4 0.04
45 1 0.01
46 64 0.60
47 32 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.32, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGACTTATGGATGGAAG
Found at i:75953935 original size:121 final size:121
Alignment explanation
Indices: 75953721--75953959 Score: 460
Period size: 121 Copynumber: 2.0 Consensus size: 121
75953711 TAATGTTGGG
75953721 ATGTTTCAAGCGTATTAACTGAAATTTTTACAGCAAGATCATTCATTCCCAAATCACGTACCTTC
1 ATGTTTCAAGCGTATTAACTGAAATTTTTACAGCAAGATCATTCATTCCCAAATCACGTACCTTC
*
75953786 GGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTA
66 GGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAACCCGGTTA
75953842 ATGTTTCAAGCGTATTAACTGAAATTTTTACAGCAAGATCATTCATTCCCAAATCACGTACCTTC
1 ATGTTTCAAGCGTATTAACTGAAATTTTTACAGCAAGATCATTCATTCCCAAATCACGTACCTTC
*
75953907 GGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGACTTAACCCGG
66 GGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAACCCGG
75953960 ATTTAGTAAC
Statistics
Matches: 116, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
121 116 1.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (121 bp):
ATGTTTCAAGCGTATTAACTGAAATTTTTACAGCAAGATCATTCATTCCCAAATCACGTACCTTC
GGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAACCCGGTTA
Found at i:75953956 original size:39 final size:40
Alignment explanation
Indices: 75953902--75954119 Score: 191
Period size: 40 Copynumber: 5.5 Consensus size: 40
75953892 AAATCACGTA
* * **
75953902 CCTTCGGAATTTA-ACCGGATATAGCT-ACTCGTTCAAATG
1 CCTTCGGGACTTAGACCGGATATAG-TAACTCGCACAAATG
*
75953941 CCTTCGGGACTTA-ACCCGGATTTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGA-CCGGATATAGTAACTCGCACAAATG
* * *
75953981 CCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTACAAATG
1 CCTTCGGGA-CTTAGACCGGATATAGTAACTCGCACAAATG
* *
75954021 CCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATG
1 CCTTCGGGACTTAGACCGGATA-TAGTAACTCGCACAAATG
* * * *
75954060 CCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-G
1 CCTTCGGGA-CTTAGACCGGATATAGTAAC-TCGCACAAATG
*
75954100 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAGACCGGA
75954120 CATCATTCAA
Statistics
Matches: 151, Mismatches: 17, Indels: 21
0.80 0.09 0.11
Matches are distributed among these distances:
38 2 0.01
39 47 0.31
40 88 0.58
41 14 0.09
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCTTCGGGACTTAGACCGGATATAGTAACTCGCACAAATG
Found at i:75953972 original size:40 final size:40
Alignment explanation
Indices: 75953935--75954119 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
75953925 GCTACTCGTT
75953935 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** *
75953975 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
* * *
75954015 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
75954054 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
75954095 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
75954120 CATCATTCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 35 0.28
40 74 0.60
41 13 0.10
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:75954053 original size:79 final size:80
Alignment explanation
Indices: 75953916--75954119 Score: 288
Period size: 79 Copynumber: 2.6 Consensus size: 80
75953906 CGGAATTTAA
* * *
75953916 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAAT
1 CCGGATATAG-TAACTCGTACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAAT
75953980 GCCTTCGGATCTTAGT
65 GCCTTCGGATCTTAGT
* *
75953996 CCGGATTTAGTAACTCGTACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATG
1 CCGGATATAGTAACTCGTACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATG
75954060 CCTTCGGATCTTAGT
66 CCTTCGGATCTTAGT
* * * *
75954075 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCGGATATAGTAAC-TCGTACAAATGCCTTCGGGACTTAGCCCGGA
75954120 CATCATTCAA
Statistics
Matches: 111, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
79 64 0.58
80 47 0.42
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (80 bp):
CCGGATATAGTAACTCGTACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATG
CCTTCGGATCTTAGT
Found at i:75956067 original size:40 final size:40
Alignment explanation
Indices: 75956022--75956450 Score: 840
Period size: 40 Copynumber: 10.7 Consensus size: 40
75956012 GCAAACACAT
*
75956022 TTGCCTTCGGGTCTTAGCCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGACATATCATCTCGCATAA
75956062 TTGCCTTCGGGTCTTAGCCCGGACATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGACATATCATCTCGCATAA
75956102 TTGCCTTCGGGTCTTAGCCCGGACATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGACATATCATCTCGCATAA
75956142 TTGCCTTCGGGTCTTAGCCCGGACATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGACATATCATCTCGCATAA
75956182 TTGCCTTCGGGTCTTAGCCCGGACATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGACATATCATCTCGCATAA
75956222 TTGCCTTCGGGTCTTAGCCCGGACATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGACATATCATCTCGCATAA
75956262 TTGCCTTCGGGTCTTAGCCCGGACATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGACATATCATCTCGCATAA
75956302 TTGCCTTCGGGTCTTAGCCCGGACATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGACATATCATCTCGCATAA
75956342 TTGCCTTCGGGTCTTAGCCCGGACATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGACATATCATCTCGCATAA
75956382 TTGCCTTCGGGTCTTAGCCCGGACATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGACATATCATCTCGCATAA
*
75956422 TTGCCTTCGGGTCTTAGCCCGGATATATC
1 TTGCCTTCGGGTCTTAGCCCGGACATATC
75956451 CCAATGCTCA
Statistics
Matches: 387, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 387 1.00
ACGTcount: A:0.20, C:0.30, G:0.20, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGACATATCATCTCGCATAA
Found at i:75964864 original size:40 final size:40
Alignment explanation
Indices: 75964819--75964967 Score: 262
Period size: 40 Copynumber: 3.7 Consensus size: 40
75964809 GCAAACACAT
75964819 TTGCCTTCGGGTCTTAGCCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGACATATCAACTCGCATAA
*
75964859 TTGCCTTCGGGTCTTAGCCCGGACATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGACATATCAACTCGCATAA
* *
75964899 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGACATATCAACTCGCATAA
*
75964939 TTGCCTTCGGGTCTTAGCCCGGATATATC
1 TTGCCTTCGGGTCTTAGCCCGGACATATC
75964968 CCAATGCTCA
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGACATATCAACTCGCATAA
Found at i:75973381 original size:40 final size:40
Alignment explanation
Indices: 75973336--75973684 Score: 617
Period size: 40 Copynumber: 8.7 Consensus size: 40
75973326 GCAAACACAT
*
75973336 TTGCCTTCGGGTCTTAGCCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
75973376 TTGCCTTCGGGTCTTAGCCCGGACATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
75973416 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
75973456 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
75973496 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
75973536 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
75973576 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
75973616 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
75973656 TTGCCTTCGGGTCTTAGCCCGGATATATC
1 TTGCCTTCGGGTCTTAGCCCGGATATATC
75973685 CCAATGCTCA
Statistics
Matches: 296, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 296 1.00
ACGTcount: A:0.21, C:0.28, G:0.20, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:75982098 original size:40 final size:40
Alignment explanation
Indices: 75982053--75983041 Score: 1942
Period size: 40 Copynumber: 24.7 Consensus size: 40
75982043 GCAAACACAT
* *
75982053 TTGCCTTCGGGTCTTAGCCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
*
75982093 TTGCCTTCGGGTCATAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
75982133 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
75982173 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
75982213 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
75982253 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
75982293 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
75982333 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
75982373 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
75982413 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
75982453 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
75982493 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
75982533 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
75982573 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
75982613 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
75982653 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
75982693 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
75982733 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
75982773 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
75982813 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
75982853 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
75982893 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
75982933 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
75982973 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
*
75983013 TTGCCTTCGGGTCTTAGCCCGGATATATC
1 TTGCCTTCGGGTCATAGCCCGGATATATC
75983042 CCAATGCTCA
Statistics
Matches: 944, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 944 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (40 bp):
TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
Found at i:75985910 original size:50 final size:50
Alignment explanation
Indices: 75985832--75986073 Score: 306
Period size: 50 Copynumber: 4.8 Consensus size: 50
75985822 ATAATAACAA
* ** *
75985832 GCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGGT
1 GCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGGT
* * * *** *
75985883 GCCCATG-CATGTCCCAAACATGGTCTTATGGGGGGCCTCTCATCTCGGT
1 GCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGT
* * *
75985932 GCCAACGCCATGTCCCAGACATGGTCTTACATAGGACCTCTTATCTCAGT
1 GCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGT
* * *
75985982 GCAAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGGT
1 GCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGT
*
75986032 GCCAACGCCATGTCCCAGACATAGTCTTACATGGGACCTCTC
1 GCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC
75986074 TACCCAAATG
Statistics
Matches: 161, Mismatches: 29, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
49 16 0.10
50 140 0.87
51 5 0.03
ACGTcount: A:0.21, C:0.31, G:0.22, T:0.26
Consensus pattern (50 bp):
GCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGT
Found at i:75986806 original size:50 final size:50
Alignment explanation
Indices: 75986700--75986935 Score: 328
Period size: 50 Copynumber: 4.7 Consensus size: 50
75986690 CATGCCAAAT
** * * *
75986700 CCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGGTGCCCATG
1 CCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGGTGCCAACG
* *** *
75986751 CCATGTCCCAAACATGGTCTTATGGGGGACCTCTCATCTCGGTGCCATCG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACG
* *
75986801 CCATGTCCCAGACATGGTCTTACATAGGACCTCTTATCTCGGTGCCAACG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACG
* * *
75986851 CCATGTCCCAGACATGGCCTTACATGGGACCTCTCATCTTGGTGCCAACA
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACG
75986901 CCATGTCCCAGACATGGTCTTACATGGGACCTCTC
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTC
75986936 TACCCAAATG
Statistics
Matches: 162, Mismatches: 23, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
50 137 0.85
51 25 0.15
ACGTcount: A:0.20, C:0.32, G:0.22, T:0.26
Consensus pattern (50 bp):
CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACG
Found at i:75990493 original size:32 final size:32
Alignment explanation
Indices: 75990450--75990580 Score: 163
Period size: 32 Copynumber: 4.1 Consensus size: 32
75990440 AGCCAAAAGT
* *
75990450 ACAGTAATATGATTGGCATAAAGCCATCAGTA
1 ACAGTAATATGATCGGCACAAAGCCATCAGTA
* * * *
75990482 GCAGTGATATGATCGGCACACAGTCATCAGTA
1 ACAGTAATATGATCGGCACAAAGCCATCAGTA
** *
75990514 ATGGTAATATGATTGGCACAAAGCCATCAGTA
1 ACAGTAATATGATCGGCACAAAGCCATCAGTA
* *
75990546 ACGGCAATATGATCGGCACAAAGCCATCAGTA
1 ACAGTAATATGATCGGCACAAAGCCATCAGTA
75990578 ACA
1 ACA
75990581 TCGGAACAAA
Statistics
Matches: 82, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 82 1.00
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.21
Consensus pattern (32 bp):
ACAGTAATATGATCGGCACAAAGCCATCAGTA
Found at i:75990556 original size:64 final size:64
Alignment explanation
Indices: 75990453--75990578 Score: 189
Period size: 64 Copynumber: 2.0 Consensus size: 64
75990443 CAAAAGTACA
* * ** * *
75990453 GTAATATGATTGGCATAAAGCCATCAGTAGCAGTGATATGATCGGCACACAGTCATCAGTAATG
1 GTAATATGATTGGCACAAAGCCATCAGTAACAGCAATATGATCGGCACAAAGCCATCAGTAATG
*
75990517 GTAATATGATTGGCACAAAGCCATCAGTAACGGCAATATGATCGGCACAAAGCCATCAGTAA
1 GTAATATGATTGGCACAAAGCCATCAGTAACAGCAATATGATCGGCACAAAGCCATCAGTAA
75990579 CATCGGAACA
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
64 55 1.00
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22
Consensus pattern (64 bp):
GTAATATGATTGGCACAAAGCCATCAGTAACAGCAATATGATCGGCACAAAGCCATCAGTAATG
Found at i:75990790 original size:24 final size:23
Alignment explanation
Indices: 75990772--75990835 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 23
75990762 AATCACAGAC
*
75990772 AAATCAGTCATTTACATCAAGGGA
1 AAATCAATCATTTACATCAA-GGA
*
75990796 AAATCAATCATTTACACTCAGGGGCA
1 AAATCAATCATTTACA-TCA-AGG-A
75990822 AAAT-AATCATTTAC
1 AAATCAATCATTTAC
75990836 CCTCTAGGGG
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
24 15 0.43
25 15 0.43
26 5 0.14
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.27
Consensus pattern (23 bp):
AAATCAATCATTTACATCAAGGA
Found at i:75990844 original size:26 final size:26
Alignment explanation
Indices: 75990772--75990847 Score: 95
Period size: 25 Copynumber: 3.0 Consensus size: 26
75990762 AATCACAGAC
* *
75990772 AAATCAGTCATTTACA-TCAAGGG-A
1 AAATCAATCATTTACACTCAGGGGCA
75990796 AAATCAATCATTTACACTCAGGGGCA
1 AAATCAATCATTTACACTCAGGGGCA
*
75990822 AAAT-AATCATTTACCCTCTAGGGGCA
1 AAATCAATCATTTACACTC-AGGGGCA
75990848 TTACGGTTAT
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
24 15 0.33
25 19 0.41
26 12 0.26
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (26 bp):
AAATCAATCATTTACACTCAGGGGCA
Done.