Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 229 of 322
Found at i:75991020 original size:27 final size:27
Alignment explanation
Indices: 75990831--75991017 Score: 250
Period size: 27 Copynumber: 6.9 Consensus size: 27
75990821 AAAATAATCA
*
75990831 TTTACCCTCTAGGGGCATTACGGT-TAT
1 TTTACCCTATAGGGGCATTACGGTCT-T
75990858 TTTACCCTATAGGGGCATTACGGTCTT
1 TTTACCCTATAGGGGCATTACGGTCTT
* *
75990885 TTTACCCTATAGAGGCATTATGGTCTT
1 TTTACCCTATAGGGGCATTACGGTCTT
* **
75990912 TTTACCCTACAGGGGCATTATAGTCTT
1 TTTACCCTATAGGGGCATTACGGTCTT
* **
75990939 TTTAACCTATAGGGGCATTACAATCTT
1 TTTACCCTATAGGGGCATTACGGTCTT
* *
75990966 TTTACCCTACAGGGGCATTACGGTCAT
1 TTTACCCTATAGGGGCATTACGGTCTT
*
75990993 TTTACGCTATAGGGGCATTACGGTC
1 TTTACCCTATAGGGGCATTACGGTC
75991018 ATTATACCTA
Statistics
Matches: 142, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
27 141 0.99
28 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.36
Consensus pattern (27 bp):
TTTACCCTATAGGGGCATTACGGTCTT
Found at i:75995957 original size:28 final size:27
Alignment explanation
Indices: 75995919--75995980 Score: 97
Period size: 28 Copynumber: 2.3 Consensus size: 27
75995909 CTGTACTGAC
* *
75995919 TACTGTATTGGGCTAAGGCCCATACTG
1 TACTGTTTTGGGCTAAGGCCCACACTG
75995946 TTACTGTTTTGGGCTAAGGCCCACACTG
1 -TACTGTTTTGGGCTAAGGCCCACACTG
75995974 TACTGTT
1 TACTGTT
75995981 ACTATATAGG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 7 0.22
28 25 0.78
ACGTcount: A:0.19, C:0.23, G:0.24, T:0.34
Consensus pattern (27 bp):
TACTGTTTTGGGCTAAGGCCCACACTG
Found at i:75995978 original size:33 final size:33
Alignment explanation
Indices: 75995907--75996006 Score: 102
Period size: 33 Copynumber: 3.2 Consensus size: 33
75995897 TGCATTATTG
*
75995907 CACTGTACTGACTACTGTATTGGGCTAAGG-CC-
1 CACTGTACTG-TTACTGTATTGGGCTAAGGCCCA
*
75995939 CA---TACTGTTACTGTTTTGGGCTAAGGCCCA
1 CACTGTACTGTTACTGTATTGGGCTAAGGCCCA
* * *
75995969 CACTGTACTGTTACTATATAGGGCTCAGGCCCA
1 CACTGTACTGTTACTGTATTGGGCTAAGGCCCA
*
75996002 GACTG
1 CACTG
75996007 ATATTGCATG
Statistics
Matches: 56, Mismatches: 7, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
28 17 0.30
29 7 0.12
30 2 0.04
32 2 0.04
33 28 0.50
ACGTcount: A:0.22, C:0.25, G:0.24, T:0.29
Consensus pattern (33 bp):
CACTGTACTGTTACTGTATTGGGCTAAGGCCCA
Found at i:76004466 original size:27 final size:27
Alignment explanation
Indices: 76004436--76004632 Score: 191
Period size: 27 Copynumber: 7.4 Consensus size: 27
76004426 TGCAATTCGT
* *
76004436 GGGTAAAATAACCGAAACACCCCCAAA
1 GGGTAAAATGACCGAAATACCCCCAAA
* * *
76004463 GGGTAGAATGACCAAAATACCCCGAAA
1 GGGTAAAATGACCGAAATACCCCCAAA
76004490 GGGTAAAATGACCGAAATACCCCCAAA
1 GGGTAAAATGACCGAAATACCCCCAAA
* * * * **
76004517 AGGTAAAAAGACTGAATTACCCCCGGA
1 GGGTAAAATGACCGAAATACCCCCAAA
* **
76004544 GGGTAAAATGACTGAAATA-CCCTGAA
1 GGGTAAAATGACCGAAATACCCCCAAA
** * *
76004570 GGGTAAAATGAGTGAAATACCCTCAGA
1 GGGTAAAATGACCGAAATACCCCCAAA
* * *
76004597 GGATAAAATGACCAAAATA-CCCCATA
1 GGGTAAAATGACCGAAATACCCCCAAA
76004623 GGGTAAAATG
1 GGGTAAAATG
76004633 GCTGCTATAC
Statistics
Matches: 138, Mismatches: 31, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
26 37 0.27
27 101 0.73
ACGTcount: A:0.44, C:0.21, G:0.21, T:0.14
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCCCAAA
Found at i:76004643 original size:53 final size:51
Alignment explanation
Indices: 76004493--76004645 Score: 137
Period size: 53 Copynumber: 2.9 Consensus size: 51
76004483 CCCGAAAGGG
* * * * * *
76004493 TAAAATGACCGAAATACCCCCAAAAGGTAAAAAGACTGAATTACCCCCGGAGGG
1 TAAAATGACCGAAATA-CCCC-AAGGGTAAAATGGCTGAA-TACCCTCAGAGGA
* *
76004547 TAAAATGACTGAAATACCCTGAAGGGTAAAATGAG-TGAAATACCCTCAGAGGA
1 TAAAATGACCGAAATACCC-CAAGGGTAAAATG-GCTG-AATACCCTCAGAGGA
* *
76004600 TAAAATGACCAAAATACCCCATAGGGTAAAATGGCTGCTATACCCT
1 TAAAATGACCGAAATACCCCA-AGGGTAAAATGGCTG-AATACCCT
76004646 TAGGAGATTT
Statistics
Matches: 81, Mismatches: 13, Indels: 11
0.77 0.12 0.10
Matches are distributed among these distances:
52 2 0.02
53 62 0.77
54 17 0.21
ACGTcount: A:0.42, C:0.21, G:0.20, T:0.18
Consensus pattern (51 bp):
TAAAATGACCGAAATACCCCAAGGGTAAAATGGCTGAATACCCTCAGAGGA
Found at i:76005055 original size:33 final size:32
Alignment explanation
Indices: 76004969--76005068 Score: 84
Period size: 28 Copynumber: 3.2 Consensus size: 32
76004959 TGCATTATTG
* *
76004969 CACTGTACTGATAACTGTATTGGACTAAGGCCCA
1 CACTGTACTG-TTACTGTA-TGGGCTAAGGCCCA
*
76005003 CACTGTTATTG-T--T-T-TGGGCTAAGGCCCA
1 CACTG-TACTGTTACTGTATGGGCTAAGGCCCA
*
76005031 CACTGTACTGTTACTGTATAGGGCTCAGGCCCA
1 CACTGTACTGTTACTGTAT-GGGCTAAGGCCCA
*
76005064 GACTG
1 CACTG
76005069 ATATTGCATG
Statistics
Matches: 53, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
27 4 0.08
28 19 0.36
30 2 0.04
31 2 0.04
32 1 0.02
33 16 0.30
34 5 0.09
35 4 0.08
ACGTcount: A:0.23, C:0.24, G:0.24, T:0.29
Consensus pattern (32 bp):
CACTGTACTGTTACTGTATGGGCTAAGGCCCA
Found at i:76006169 original size:40 final size:40
Alignment explanation
Indices: 76006114--76006197 Score: 168
Period size: 40 Copynumber: 2.1 Consensus size: 40
76006104 TAGAAACAAA
76006114 TTCTGAAATATCTCTTTTCATTCCTGCCCACCAGTACGTT
1 TTCTGAAATATCTCTTTTCATTCCTGCCCACCAGTACGTT
76006154 TTCTGAAATATCTCTTTTCATTCCTGCCCACCAGTACGTT
1 TTCTGAAATATCTCTTTTCATTCCTGCCCACCAGTACGTT
76006194 TTCT
1 TTCT
76006198 TCAAATCATT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.19, C:0.30, G:0.10, T:0.42
Consensus pattern (40 bp):
TTCTGAAATATCTCTTTTCATTCCTGCCCACCAGTACGTT
Found at i:76012715 original size:39 final size:40
Alignment explanation
Indices: 76012619--76012782 Score: 122
Period size: 40 Copynumber: 4.1 Consensus size: 40
76012609 CGGAATTTAA
** **
76012619 CCGGATATAGCTCCTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAGCAACTCGCACAAATGCCTTCGGGACATAGC
* * * *
76012659 CCGGTTATAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGCAACTCGCACAAATGCCTTCGGGACATAGC
* * * *
76012698 CCGGA-ATTAGCATCTCGCACAAATACCTTC-GGATCTTAGT
1 CCGGATA-TAGCAACTCGCACAAATGCCTTCGGGA-CATAGC
* * *
76012738 CCGGATATGGTC-ACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAG-CAAC-TCGCACAAATGCCTTCGGGACATAGC
76012778 CCGGA
1 CCGGA
76012783 CATCATTCAA
Statistics
Matches: 98, Mismatches: 19, Indels: 14
0.75 0.15 0.11
Matches are distributed among these distances:
38 3 0.03
39 28 0.29
40 54 0.55
41 13 0.13
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAGCAACTCGCACAAATGCCTTCGGGACATAGC
Found at i:76015406 original size:37 final size:37
Alignment explanation
Indices: 76015347--76015448 Score: 168
Period size: 37 Copynumber: 2.8 Consensus size: 37
76015337 AGCTCAGACG
* * *
76015347 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
76015384 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
76015421 TAATCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
76015449 TAGAGCTCGG
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:76015686 original size:49 final size:49
Alignment explanation
Indices: 76015567--76016081 Score: 803
Period size: 49 Copynumber: 10.6 Consensus size: 49
76015557 CCCTTCGGGA
* * * * * *
76015567 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
76015614 CCTGTCGC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
76015661 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
76015710 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
76015759 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
76015808 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
76015857 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
76015906 CTTATCACATATATATACACTTTCACATTCATCACATCGTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATC--GGCTATTAGGC
* *
76015957 CTTATCAC--ATATATACACTTTCACATTCATCACATCGTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATC--GGCTATTAGGC
* *
76016006 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
76016053 CTTATCACATATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
76016082 TATTCAAATA
Statistics
Matches: 444, Mismatches: 16, Indels: 14
0.94 0.03 0.03
Matches are distributed among these distances:
46 1 0.00
47 58 0.13
49 368 0.83
51 17 0.04
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:76015966 original size:24 final size:24
Alignment explanation
Indices: 76015936--76016015 Score: 65
Period size: 24 Copynumber: 3.3 Consensus size: 24
76015926 TTTCACATTC
76015936 ATCACATCGTGGCCATTCGGCCTT
1 ATCACATCGTGGCCATTCGGCCTT
* ** * * *
76015960 ATCACAT-ATATACACTTTC-ACATT
1 ATCACATCGT-GGC-CATTCGGCCTT
76015984 CATCACATCGTGGCCATTCGGCCTT
1 -ATCACATCGTGGCCATTCGGCCTT
76016009 ATCACAT
1 ATCACAT
76016016 ATATACACTT
Statistics
Matches: 39, Mismatches: 12, Indels: 10
0.64 0.20 0.16
Matches are distributed among these distances:
23 1 0.03
24 22 0.56
25 15 0.38
26 1 0.03
ACGTcount: A:0.25, C:0.31, G:0.12, T:0.31
Consensus pattern (24 bp):
ATCACATCGTGGCCATTCGGCCTT
Found at i:76023111 original size:39 final size:40
Alignment explanation
Indices: 76023067--76023148 Score: 157
Period size: 39 Copynumber: 2.1 Consensus size: 40
76023057 TGGGTTAAGC
76023067 CCCTAACTGAAATTGAAACTATTATTGAAATGGGCTT-GG
1 CCCTAACTGAAATTGAAACTATTATTGAAATGGGCTTAGG
76023106 CCCTAACTGAAATTGAAACTATTATTGAAATGGGCTTAGG
1 CCCTAACTGAAATTGAAACTATTATTGAAATGGGCTTAGG
76023146 CCC
1 CCC
76023149 AGACTATGAC
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
39 37 0.88
40 5 0.12
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (40 bp):
CCCTAACTGAAATTGAAACTATTATTGAAATGGGCTTAGG
Found at i:76046142 original size:25 final size:25
Alignment explanation
Indices: 76046102--76046196 Score: 111
Period size: 25 Copynumber: 3.8 Consensus size: 25
76046092 TATGCTCATA
* *
76046102 TGAGCTGTA-AACGGTAACCTCCTC
1 TGAGCTGAATAACGGTAAGCTCCTC
* *
76046126 TGAGTTGAATAATGGTAAGCTCCTC
1 TGAGCTGAATAACGGTAAGCTCCTC
** * *
76046151 CAAGCTGAATAACAGTAAGCTCATC
1 TGAGCTGAATAACGGTAAGCTCCTC
76046176 TGAGCTGAATAACGGTAAGCT
1 TGAGCTGAATAACGGTAAGCT
76046197 TATACAAGCT
Statistics
Matches: 57, Mismatches: 13, Indels: 1
0.80 0.18 0.01
Matches are distributed among these distances:
24 7 0.12
25 50 0.88
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (25 bp):
TGAGCTGAATAACGGTAAGCTCCTC
Found at i:76046185 original size:50 final size:50
Alignment explanation
Indices: 76046115--76046224 Score: 130
Period size: 50 Copynumber: 2.2 Consensus size: 50
76046105 GCTGTAAACG
* * * * * *
76046115 GTAACCTCCTCTGAGTTGAATAATGGTAAGCTCCTCCAAGCTGAATAACA
1 GTAAGCTCATCTGAGCTGAATAACGGTAAGCTCATACAAGCTGAATAACA
* * * *
76046165 GTAAGCTCATCTGAGCTGAATAACGGTAAGCTTATACAAGCTGAGTATCG
1 GTAAGCTCATCTGAGCTGAATAACGGTAAGCTCATACAAGCTGAATAACA
76046215 GTAAGCTCAT
1 GTAAGCTCAT
76046225 AAGAGCTAAA
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (50 bp):
GTAAGCTCATCTGAGCTGAATAACGGTAAGCTCATACAAGCTGAATAACA
Found at i:76046206 original size:25 final size:24
Alignment explanation
Indices: 76046131--76046224 Score: 98
Period size: 25 Copynumber: 3.8 Consensus size: 24
76046121 TCCTCTGAGT
* *
76046131 TGAATAATGGTAAGCTCCTCCAAGC
1 TGAATAACGGTAAGCTCAT-CAAGC
* *
76046156 TGAATAACAGTAAGCTCATCTGAGC
1 TGAATAACGGTAAGCTCATC-AAGC
*
76046181 TGAATAACGGTAAGCTTATACAAGC
1 TGAATAACGGTAAGCTCAT-CAAGC
* *
76046206 TGAGTATCGGTAAGCTCAT
1 TGAATAACGGTAAGCTCAT
76046225 AAGAGCTAAA
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
24 1 0.02
25 55 0.96
26 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (24 bp):
TGAATAACGGTAAGCTCATCAAGC
Found at i:76046231 original size:25 final size:25
Alignment explanation
Indices: 76046095--76046231 Score: 91
Period size: 25 Copynumber: 5.5 Consensus size: 25
76046085 GTACATGTAT
* *
76046095 GCTCATATGAGCTGTA-AACGGTAA
1 GCTCATAAGAGCTGAATAACGGTAA
* * ** * *
76046119 CCTCCTCTGAGTTGAATAATGGTAA
1 GCTCATAAGAGCTGAATAACGGTAA
* * *
76046144 GCTCCTCCA-AGCTGAATAACAGTAA
1 GCTCAT-AAGAGCTGAATAACGGTAA
**
76046169 GCTCATCTGAGCTGAATAACGGTAA
1 GCTCATAAGAGCTGAATAACGGTAA
* * *
76046194 GCTTATACA-AGCTGAGTATCGGTAA
1 GCTCATA-AGAGCTGAATAACGGTAA
76046219 GCTCATAAGAGCT
1 GCTCATAAGAGCT
76046232 AAAATCGGTA
Statistics
Matches: 88, Mismatches: 20, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
24 13 0.15
25 74 0.84
26 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (25 bp):
GCTCATAAGAGCTGAATAACGGTAA
Found at i:76056011 original size:27 final size:27
Alignment explanation
Indices: 76055981--76056158 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
76055971 ATATTGAGTC
* * * *
76055981 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
76056008 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
76056035 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
76056063 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
76056090 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
76056117 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
76056144 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
76056159 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:76056120 original size:82 final size:81
Alignment explanation
Indices: 76056002--76056157 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
76055992 TGCTATATAA
* *
76056002 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
76056067 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
76056084 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
76056148 CACTTAGTGC
65 CACTTAGTGC
76056158 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:76062901 original size:27 final size:27
Alignment explanation
Indices: 76062871--76063048 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
76062861 ATATTGAGTC
* * * *
76062871 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
76062898 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
76062925 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
76062953 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
76062980 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
76063007 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
76063034 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
76063049 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:76063010 original size:82 final size:81
Alignment explanation
Indices: 76062892--76063047 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
76062882 TGCTATATAA
* *
76062892 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
76062957 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
76062974 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
76063038 CACTTAGTGC
65 CACTTAGTGC
76063048 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:76071380 original size:28 final size:28
Alignment explanation
Indices: 76071349--76071421 Score: 87
Period size: 27 Copynumber: 2.6 Consensus size: 28
76071339 AAAGTGACTA
76071349 GCGAACCCCA-CTTCACAAAAACCAACTG
1 GCGAACCCCAGC-TCACAAAAACCAACTG
** *
76071377 GCGAACCTTAGCTCAC-CAAACCAACTG
1 GCGAACCCCAGCTCACAAAAACCAACTG
*
76071404 GTGAACCCCAGCTCACAA
1 GCGAACCCCAGCTCACAA
76071422 TGAATTTGGC
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
27 23 0.64
28 12 0.33
29 1 0.03
ACGTcount: A:0.36, C:0.38, G:0.14, T:0.12
Consensus pattern (28 bp):
GCGAACCCCAGCTCACAAAAACCAACTG
Found at i:76076104 original size:23 final size:23
Alignment explanation
Indices: 76076078--76076176 Score: 110
Period size: 23 Copynumber: 4.3 Consensus size: 23
76076068 ATAAGTTCCA
**
76076078 CACTGATATGTAGCCAAATTTAC
1 CACTGATATGTAGCCAAAGCTAC
*
76076101 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCAAAGCTAC
**
76076124 CACTG-TAATGTAGCCGTAGCTAC
1 CACTGAT-ATGTAGCCAAAGCTAC
* * *
76076147 CACTGAAACGTAGCCGAAGCTAC
1 CACTGATATGTAGCCAAAGCTAC
76076170 CACTGAT
1 CACTGAT
76076177 CAATAACACT
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
22 1 0.02
23 65 0.98
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.23
Consensus pattern (23 bp):
CACTGATATGTAGCCAAAGCTAC
Found at i:76076428 original size:18 final size:17
Alignment explanation
Indices: 76076402--76076440 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
76076392 ATTTTCCTTC
76076402 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
76076419 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
76076437 CACA
1 CACA
76076441 ATTTATATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:76080659 original size:21 final size:21
Alignment explanation
Indices: 76080633--76080674 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
76080623 TCAACTTGCT
76080633 AGCAAGTCAAACATTTTGACA
1 AGCAAGTCAAACATTTTGACA
76080654 AGCAAGTCAAACATTTTGACA
1 AGCAAGTCAAACATTTTGACA
76080675 CTAACTCCGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.19, G:0.14, T:0.24
Consensus pattern (21 bp):
AGCAAGTCAAACATTTTGACA
Found at i:76086898 original size:29 final size:29
Alignment explanation
Indices: 76086849--76086909 Score: 104
Period size: 29 Copynumber: 2.1 Consensus size: 29
76086839 GCAAATACCA
*
76086849 TAGCCAATAGTTCATTTTCATTAGTAGTG
1 TAGCCAATAGTTCATTCTCATTAGTAGTG
*
76086878 TAGCCAATAGTTCCTTCTCATTAGTAGTG
1 TAGCCAATAGTTCATTCTCATTAGTAGTG
76086907 TAG
1 TAG
76086910 TTCAATTGCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.39
Consensus pattern (29 bp):
TAGCCAATAGTTCATTCTCATTAGTAGTG
Found at i:76094855 original size:30 final size:29
Alignment explanation
Indices: 76094821--76094890 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 29
76094811 ACAAACCAAG
*
76094821 AGAAAGAAAAGAAGAAAAATATGGAGAAAA
1 AGAAAGAAAAGAAGAAAAACAT-GAGAAAA
*
76094851 AGAAAGAACAA-AAGAAAAACGTGAGAAAA
1 AGAAAGAA-AAGAAGAAAAACATGAGAAAA
76094880 A-AAAGCAAAAG
1 AGAAAG-AAAAG
76094891 GAATGATGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
28 6 0.17
29 10 0.29
30 17 0.49
31 2 0.06
ACGTcount: A:0.70, C:0.04, G:0.21, T:0.04
Consensus pattern (29 bp):
AGAAAGAAAAGAAGAAAAACATGAGAAAA
Found at i:76101124 original size:80 final size:79
Alignment explanation
Indices: 76101040--76101211 Score: 202
Period size: 79 Copynumber: 2.2 Consensus size: 79
76101030 GGACTAAGAT
* *
76101040 CCGAAGGCTTTTGTGCGAGAT-ACAAATCCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATGACAAAT-CCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
76101104 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * ** * * * *
76101120 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATGACAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
76101185 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
76101199 CCGAAGGCATTTG
1 CCGAAGGCATTTG
76101212 AACGAGGAGC
Statistics
Matches: 77, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
79 38 0.49
80 35 0.45
81 4 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATGACAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:76101191 original size:39 final size:39
Alignment explanation
Indices: 76100987--76101209 Score: 198
Period size: 40 Copynumber: 5.6 Consensus size: 39
76100977 TTGAATGCTG
* * * * * *
76100987 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
76101027 TCCGGACTAAGAT-CCGAAGGCTTTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGC-ATTGTGCGAGTTACTAAA
* * *
76101066 TCCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 T-CCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
**
76101107 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* *
76101147 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
76101186 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
76101210 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 20, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
39 40 0.26
40 103 0.66
41 13 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:76101229 original size:79 final size:80
Alignment explanation
Indices: 76101063--76101244 Score: 197
Period size: 79 Copynumber: 2.3 Consensus size: 80
76101053 TGCGAGATAC
* * * *
76101063 AAATCCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGC
1 AAAT-CCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
** ** *
76101128 ATTCGTGCGAGTTGTT
65 ATTCGAACGAGGAGCT
* * * *
76101144 AAATCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCA
1 AAATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCA
*
76101208 TTTGAACGAGGAGCT
66 TTCGAACGAGGAGCT
* *
76101223 ATATCC-GGTTAAATCCCGAAGG
1 AAATCCGGGTTAAGTCCCGAAGG
76101245 TACGTGATTT
Statistics
Matches: 84, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
78 14 0.17
79 49 0.58
80 17 0.20
81 4 0.05
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
AAATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCA
TTCGAACGAGGAGCT
Found at i:76107350 original size:94 final size:92
Alignment explanation
Indices: 76107189--76107375 Score: 322
Period size: 94 Copynumber: 2.0 Consensus size: 92
76107179 ATTAAATAAT
76107189 GAAAAGGAGTATGATGAATACACAAAAAAAAAAAATGTGTAGTTGATTCTTTCCCCCCCATTGCC
1 GAAAAGGAGTATGATGAATACAC--AAAAAAAAAATGTGTAGTTGATTCTTTCCCCCCCATTGCC
76107254 GTGAGCTAAAGAAAAGAGAGGAGAAGATC
64 GTGAGCTAAAGAAAAGAGAGGAGAAGATC
76107283 GAAAAGGAGTATGATGAATACAC-AAAAAAAAATGTGTAGTTGATTCTTTTTCCCCCCCCATTGC
1 GAAAAGGAGTATGATGAATACACAAAAAAAAAATGTGTAGTTGATTC--TTT-CCCCCCCATTGC
76107347 CGTGAGCTAAAGAAAAGAGAGGAGAAGAT
63 CGTGAGCTAAAGAAAAGAGAGGAGAAGAT
76107376 TTTTGTTCAT
Statistics
Matches: 90, Mismatches: 0, Indels: 6
0.94 0.00 0.06
Matches are distributed among these distances:
91 23 0.26
93 3 0.03
94 64 0.71
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.21
Consensus pattern (92 bp):
GAAAAGGAGTATGATGAATACACAAAAAAAAAATGTGTAGTTGATTCTTTCCCCCCCATTGCCGT
GAGCTAAAGAAAAGAGAGGAGAAGATC
Found at i:76108562 original size:80 final size:79
Alignment explanation
Indices: 76108478--76108649 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
76108468 GGACTAAGAT
*
76108478 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
76108542 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
76108558 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
76108623 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
76108637 CCGAAGGCATTTG
1 CCGAAGGCATTTG
76108650 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:76108629 original size:39 final size:39
Alignment explanation
Indices: 76108425--76108647 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
76108415 TTGAATGCTG
* * * * *
76108425 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
76108465 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
76108504 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
76108545 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
76108585 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
76108624 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
76108648 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:76108667 original size:79 final size:80
Alignment explanation
Indices: 76108505--76108672 Score: 180
Period size: 79 Copynumber: 2.1 Consensus size: 80
76108495 AGATACAAAT
* * *
76108505 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGCCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
76108570 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * * *
76108585 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGCCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
76108649 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
76108664 TCC-GGTTAA
1 TCCGGGTTAA
76108673 ATCTCGAAGG
Statistics
Matches: 72, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
78 6 0.08
79 48 0.67
80 18 0.25
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGCCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:76112181 original size:92 final size:92
Alignment explanation
Indices: 76112055--76112238 Score: 368
Period size: 92 Copynumber: 2.0 Consensus size: 92
76112045 ACGCCGATTT
76112055 CGATAGCCCCATATCGTATGGCACCAACCGAGTTAAAAGAGTTAAAAGCTCAGTTGCAAGAATTG
1 CGATAGCCCCATATCGTATGGCACCAACCGAGTTAAAAGAGTTAAAAGCTCAGTTGCAAGAATTG
76112120 ACGGATAGAGGTTTTGCTCGACCAAGC
66 ACGGATAGAGGTTTTGCTCGACCAAGC
76112147 CGATAGCCCCATATCGTATGGCACCAACCGAGTTAAAAGAGTTAAAAGCTCAGTTGCAAGAATTG
1 CGATAGCCCCATATCGTATGGCACCAACCGAGTTAAAAGAGTTAAAAGCTCAGTTGCAAGAATTG
76112212 ACGGATAGAGGTTTTGCTCGACCAAGC
66 ACGGATAGAGGTTTTGCTCGACCAAGC
76112239 TTCTCACCTT
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
92 92 1.00
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.22
Consensus pattern (92 bp):
CGATAGCCCCATATCGTATGGCACCAACCGAGTTAAAAGAGTTAAAAGCTCAGTTGCAAGAATTG
ACGGATAGAGGTTTTGCTCGACCAAGC
Found at i:76114598 original size:30 final size:30
Alignment explanation
Indices: 76114562--76114676 Score: 203
Period size: 30 Copynumber: 3.8 Consensus size: 30
76114552 NNNNNACAAG
*
76114562 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
* *
76114592 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
76114622 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
76114652 TGGTGGTGGAAAAGGTGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGT
76114677 TGAGAAAAGT
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 80 1.00
ACGTcount: A:0.21, C:0.03, G:0.50, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
Found at i:76115727 original size:75 final size:75
Alignment explanation
Indices: 76115629--76115815 Score: 254
Period size: 75 Copynumber: 2.5 Consensus size: 75
76115619 CGACATGTAA
* * * *
76115629 ACCCAAGGCTCAACTCACATCTCGCAATATGAGTTGA-TTTTTGAAAAGTAGAAATTGAAAA-CG
1 ACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGAAGAAATTGAAAATAG
76115692 CCTCAGCGTGT
66 -CTCAGCGTGT
76115703 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGAAGAAATTGAAAAT
1 -ACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAGAAGAAATTGAAAAT
*
76115768 AGCTTAGCGTGT
64 AGCTCAGCGTGT
* * *
76115780 -CCTGAGGCTCAATTCACCTCTCGCAATATGAATTGA
1 ACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
76115816 AAAAAATACC
Statistics
Matches: 101, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
75 68 0.67
77 32 0.32
78 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.27
Consensus pattern (75 bp):
ACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGAAGAAATTGAAAATAG
CTCAGCGTGT
Found at i:76115929 original size:209 final size:207
Alignment explanation
Indices: 76115636--76116449 Score: 574
Period size: 224 Copynumber: 3.9 Consensus size: 207
76115626 TAAACCCAAG
* ** * * *
76115636 GCTCAACTCACATCTCGCAATATGAGTTGATTTTTGAAAAGTAGAAATTGAAAACGCCTCAGCGT
1 GCTCAACTCACATCTCGAAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAACACCTCAGCAT
* *
76115701 GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAAGAAGAAATTGAA
66 GTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTGAAAA-AAGAAATTGAA
* * * *
76115765 AATAGCTTAGCGTGTCCTGAGGCTCAATTCACCTCTCGCAATATGAATTGAAAAAAATACCACAG
130 AATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGAAAAAAATACCACAG
76115830 TGTGTAATCTGAA
195 TGTGTAATCTGAA
* * *
76115843 GCTCAACTCACCTCTCGAAATATGAGTTGATTTTTTTTAAAAACAGAAATTAAAAATACCTCAGC
1 GCTCAACTCACATCTCGAAATATGAGTTGA--TTTTTGAAAAACAGAAATTAAAAACACCTCAGC
*
76115908 ATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTG
64 ATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TTTTTTTTGAAAAAAGAAATTG
* **
76115973 AAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTAAA
128 AAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA----A-------TT---
* * * * *
76116038 AACAGAAATTGAAATTACCTCAGCGTGT--CCTGAG
179 ----GAAA---AAAATACCACAGTGTGTAATCTGAA
** * * * * **
76116072 GCTCAACTCATTTCTCGCAATATAAGTTGAATTTTG-AAAACAGAAATTGAAATTACCTCAGC--
1 GCTCAACTCACATCTCGAAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAACACCTCAGCAT
* ** * * *
76116134 GTG-TCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTAACAACAGAAATTGA
66 GTGAACC-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTGAA-AAAAGAAATTGA
* * * * **
76116198 AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAA-A-C
129 AAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGA---AAAAAATACC
***
76116261 A-AAAAT-TAA----AA
191 ACAGTGTGTAATCTGAA
* * * ** *
76116272 GGCTTAACTCACCTCTCGCAATATGAGTCAATTTTTTTTG-AAAACAGAAATTGAAAACACCTCA
1 -GCTCAACTCACATCTCGAAATATGAGT---TGATTTTTGAAAAACAGAAATTAAAAACACCTCA
* * * ** * *
76116336 --ACGTG-TCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA---ATTTTGAAAATAGAAAT
62 GCATGTGAAC-CGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTGAAAAAAGAAAT
* * ** *
76116395 TGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
126 TGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGA
76116450 TTTTTTTTTA
Statistics
Matches: 499, Mismatches: 69, Indels: 85
0.76 0.11 0.13
Matches are distributed among these distances:
200 61 0.12
201 29 0.06
202 1 0.00
203 2 0.00
204 66 0.13
205 1 0.00
206 5 0.01
207 28 0.06
209 66 0.13
210 49 0.10
211 12 0.02
213 2 0.00
214 1 0.00
221 2 0.00
223 12 0.02
224 86 0.17
226 24 0.05
227 4 0.01
228 4 0.01
229 30 0.06
231 14 0.03
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.31
Consensus pattern (207 bp):
GCTCAACTCACATCTCGAAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAACACCTCAGCAT
GTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTGAAAAAAGAAATTGAAA
ATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGAAAAAAATACCACAGT
GTGTAATCTGAA
Found at i:76116014 original size:76 final size:76
Alignment explanation
Indices: 76115838--76116253 Score: 574
Period size: 76 Copynumber: 5.5 Consensus size: 76
76115828 AGTGTGTAAT
* * * *
76115838 CTGAAGCTCAACTCACCTCTCGAAATATGAGTTGA-TTTTTTTTAAAAACAGAAATTAAAAATAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTGAAATTAC
*
76115902 CTCAGCATGTGAAC
66 CTCAGC--GTG-TC
* * *
76115916 C-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGAAAATAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTGAAATTAC
*
76115980 CTCAACGTGTC
66 CTCAGCGTGTC
* **
76115991 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTGAAATTAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTGAAATTAC
76116056 CTCAGCGTGTC
66 CTCAGCGTGTC
** * * *
76116067 CTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA----ATTTTGAAAACAGAAATTGAAATTAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTGAAATTAC
76116128 CTCAGCGTGTC
66 CTCAGCGTGTC
** *
76116139 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTAACAACAGAAATTGAAATTAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTGAAATTAC
76116204 CTCAGCGTGTC
66 CTCAGCGTGTC
*
76116215 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
76116254 GAAAAACAAA
Statistics
Matches: 307, Mismatches: 25, Indels: 14
0.89 0.07 0.04
Matches are distributed among these distances:
72 69 0.22
75 1 0.00
76 174 0.57
77 30 0.10
78 33 0.11
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33
Consensus pattern (76 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTGAAATTAC
CTCAGCGTGTC
Found at i:76116145 original size:148 final size:148
Alignment explanation
Indices: 76115838--76116271 Score: 615
Period size: 148 Copynumber: 2.9 Consensus size: 148
76115828 AGTGTGTAAT
* ** * * *
76115838 CTGAAGCTCAACTCACCTCTCGAAATATGAGTTGA-TTTTTTTTAAAAACAGAAATTAAAAATAC
1 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTGAAATTAC
* *
76115902 CTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACA
66 CTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA----ATTTTGAAAACA
76115966 GAAATTGAAAATACCTCAACGTGTC
124 GAAATTGAAAATACCTCAACGTGTC
*
76115991 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTGAAATTAC
1 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTGAAATTAC
**
76116056 CTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTG
66 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTG
* *
76116121 AAATTACCTCAGCGTGTC
131 AAAATACCTCAACGTGTC
*
76116139 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTAACAACAGAAATTGAAATTAC
1 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTGAAATTAC
* * *
76116204 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTG-ATTTTGAAAAACAAAAATT
66 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGAATTTTG-AAAACAGAAATT
76116268 -AAAA
130 GAAAA
76116272 GGCTTAACTC
Statistics
Matches: 257, Mismatches: 21, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
147 9 0.04
148 149 0.58
151 2 0.01
152 34 0.13
153 30 0.12
154 33 0.13
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (148 bp):
CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTGAAATTAC
CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTG
AAAATACCTCAACGTGTC
Found at i:76116350 original size:276 final size:270
Alignment explanation
Indices: 76115994--76117101 Score: 1409
Period size: 276 Copynumber: 4.0 Consensus size: 270
76115984 ACGTGTCTTG
* ** * * * *
76115994 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTGAAATTACCTC
1 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTTTTTTGAAAACAGAAATTGAAAATACCTC
* * * *
76116059 AGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAA
65 AACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAA-AAAAATTAAAA
* *
76116124 TTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTAACAAC
129 ATACCTCAACGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA---TTTTTTAA-AA-
* * * *
76116189 AGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
189 AAAAATTAAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
76116254 GAAAAACAAAAATT-AAA
254 GAAAAA-AAAAATTAAAA
*
76116271 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTTTTTTGAAAACAGAAATTGAAAACACCTCA
1 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTTTTTTGAAAACAGAAATTGAAAATACCTCA
* * *
76116336 ACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAATAGAAATTGAAAT
66 ACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAA-AAAAATTAAAAA
*
76116401 TACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTAACAACA
130 TACCTCAACGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA---TTTTTTAA-AA-A
* * * *
76116466 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG
190 AAAATTAAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG
76116531 AAAAACAAAAATT-AAA
255 AAAAA-AAAAATTAAAA
76116547 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTTTTTTGAAAACAGAAATTGAAAATACCTCA
1 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTTTTTTGAAAACAGAAATTGAAAATACCTCA
* * *
76116612 ACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTAAAAAAAAATTAAAAAT
66 ACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAAAAAAATTAAAAAT
*
76116677 ACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTAAAAAAAAATT
131 ACCTCAACGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTAAAAAAAAATT
* ** * **
76116742 AAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTAAAAA
196 AAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAA
76116807 AAAATTAAAAATACCTCA
261 AAAATT---AA-A----A
* ** * *
76116825 ACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--TTTTTT-AAAA-AAAAATTAA
1 A-G-G-CTT-A-ACTC-AC-C---TCTCGCAATATGAGTCAATTTTTTTTGAAAACAGAAATTGA
* * *
76116886 AAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTAAAAAAA
56 AAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAAAAA
*
76116951 AATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTA
121 AATTAAAAATACCTCAACGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTA
* ** *
76117016 AAAAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAT
186 AAAAAAAATTAAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
** *
76117081 TTTTTAAAAAAAAATTGAAA
251 TTTGAAAAAAAAAATTAAAA
76117101 A
1 A
76117102 TACCTCAACG
Statistics
Matches: 776, Mismatches: 36, Indels: 39
0.91 0.04 0.05
Matches are distributed among these distances:
269 7 0.01
270 61 0.08
271 2 0.00
272 8 0.01
273 1 0.00
274 1 0.00
275 56 0.07
276 355 0.46
277 25 0.03
278 2 0.00
279 1 0.00
280 2 0.00
281 4 0.01
282 1 0.00
283 3 0.00
284 220 0.28
285 5 0.01
286 6 0.01
288 16 0.02
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33
Consensus pattern (270 bp):
AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTTTTTTGAAAACAGAAATTGAAAATACCTCA
ACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAAAAAAATTAAAAAT
ACCTCAACGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTAAAAAAAAATT
AAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAA
AAAATTAAAA
Found at i:76116376 original size:128 final size:130
Alignment explanation
Indices: 76116142--76116387 Score: 352
Period size: 128 Copynumber: 1.9 Consensus size: 130
76116132 GCGTGTCCTG
** ** * **
76116142 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTAACAACAGAAATTGAAATTACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTTGAACAACAGAAATTGAAAACACCTC
* *
76116207 AGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTG-ATTTTGAAAAACAAAAATTAAA
66 AACGTGTCCTGAGGCTCAACTCACCTCTAGCAATATAAGTTGAATTTTGAAAAACAAAAATTAAA
*
76116271 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTTTTTTGAA-AACAGAAATTGAAAACACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTTGAACAACAGAAATTGAAAACACCTC
* ** *
76116335 AACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAA
66 AACGTGTCCTGAGGCTCAACTCACCTCTAGCAATATAAGTTGAATTTTGAAAA
76116388 TAGAAATTGA
Statistics
Matches: 102, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
128 55 0.54
129 47 0.46
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.32
Consensus pattern (130 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTTGAACAACAGAAATTGAAAACACCTC
AACGTGTCCTGAGGCTCAACTCACCTCTAGCAATATAAGTTGAATTTTGAAAAACAAAAATTAAA
Found at i:76116497 original size:76 final size:75
Alignment explanation
Indices: 76116271--76116529 Score: 344
Period size: 72 Copynumber: 3.5 Consensus size: 75
76116261 AAAAATTAAA
* ** **
76116271 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTTTTTTGAAAACAGAAATTGAAAACACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAATTACCTCA
* *
76116336 ACGTGTCTTG
66 GCGTGTCCTG
** * * *
76116346 AGGCTCAACTCATTTCTCGCAATATAAGTTGA---ATTTTGAAAATAGAAATTGAAATTACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAATTACCTCA
76116408 GCGTGTCCTG
66 GCGTGTCCTG
** *
76116418 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTAACAACAGAAATTGAAATTACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAA-AACAGAAATTGAAATTACCTC
76116483 AGCGTGTCCTG
65 AGCGTGTCCTG
*
76116494 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
76116530 GAAAAACAAA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
72 65 0.40
75 32 0.20
76 64 0.40
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (75 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAATTACCTCA
GCGTGTCCTG
Found at i:76116543 original size:148 final size:147
Alignment explanation
Indices: 76116271--76116543 Score: 377
Period size: 148 Copynumber: 1.9 Consensus size: 147
76116261 AAAAATTAAA
*
76116271 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTTTTTTGAAAACAGAAATTGAAAACACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTTGAAAACAGAAATTGAAAACACCTCA
* ** * * *
76116336 ACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAATAGAAATTGAAAT
66 ACGTGTCCTGAGGCTCAACTCACCTCTAGCAATATAAGTTGAATTTTGAAAACAAAAATTGAAAT
76116401 TACCTCAGCGTGTCCTG
131 TACCTCAGCGTGTCCTG
** ** * **
76116418 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTAACAACAGAAATTGAAATTACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTTGAA-AACAGAAATTGAAAACACCTC
* *
76116483 AGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTG-ATTTTGAAAAACAAAAATT
65 AACGTGTCCTGAGGCTCAACTCACCTCTAGCAATATAAGTTGAATTTTG-AAAACAAAAATT
76116544 AAAAGGCTTA
Statistics
Matches: 108, Mismatches: 16, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
147 43 0.40
148 65 0.60
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.32
Consensus pattern (147 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTTGAAAACAGAAATTGAAAACACCTCA
ACGTGTCCTGAGGCTCAACTCACCTCTAGCAATATAAGTTGAATTTTGAAAACAAAAATTGAAAT
TACCTCAGCGTGTCCTG
Found at i:76116647 original size:128 final size:128
Alignment explanation
Indices: 76116418--76116674 Score: 372
Period size: 128 Copynumber: 2.0 Consensus size: 128
76116408 GCGTGTCCTG
** ** * *
76116418 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTAACAACAGAAATTGAAATTACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTTGAACAACAGAAATTGAAAATACCTC
*
76116483 AGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
66 AACGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAA-AAAAATTAAA
*
76116547 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTTTTTTGAA-AACAGAAATTGAAAATACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTTGAACAACAGAAATTGAAAATACCTC
* ** * **
76116611 AACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTAAAAAAAAATTAAA
66 AACGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAAAAAATTAAA
76116674 A
1 A
76116675 ATACCTCAAC
Statistics
Matches: 114, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
127 11 0.10
128 66 0.58
129 37 0.32
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (128 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTTGAACAACAGAAATTGAAAATACCTC
AACGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAAAAAATTAAA
Found at i:76116699 original size:71 final size:71
Alignment explanation
Indices: 76116547--76117244 Score: 1153
Period size: 71 Copynumber: 9.7 Consensus size: 71
76116537 AAAAATTAAA
* ** ** * *
76116547 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTTTTTTGAAAACAGAAATTGAAAATACCTCA
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGA--TTTTTT-AAAA-AAAAATTAAAAATACCTCA
76116612 ACGTGTCTTG
62 ACGTGTCTTG
76116622 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTAAAAAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTAAAAAAAAATTAAAAATACCTCAACGT
76116687 GTCTTG
66 GTCTTG
76116693 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTAAAAAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTAAAAAAAAATTAAAAATACCTCAACGT
76116758 GTCTTG
66 GTCTTG
76116764 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTAAAAAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTAAAAAAAAATTAAAAATACCTCAACGT
76116829 GTCTTG
66 GTCTTG
76116835 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTAAAAAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTAAAAAAAAATTAAAAATACCTCAACGT
76116900 GTCTTG
66 GTCTTG
76116906 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTAAAAAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTAAAAAAAAATTAAAAATACCTCAACGT
76116971 GTCTTG
66 GTCTTG
76116977 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTAAAAAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTAAAAAAAAATTAAAAATACCTCAACGT
76117042 GTCTTG
66 GTCTTG
*
76117048 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTAAAAAAAAATTGAAAATACCTCAACGT
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTAAAAAAAAATTAAAAATACCTCAACGT
76117113 GTCTTG
66 GTCTTG
* * * * * * *
76117119 AGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTAAAA-AAAAATTAAAAATACCTCAACG
*
76117184 TGTCCTG
65 TGTCTTG
** * **
76117191 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTAAAA-AAAAATTAAAA
76117245 GGCTTAACTC
Statistics
Matches: 598, Mismatches: 24, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
71 491 0.82
72 74 0.12
73 6 0.01
75 27 0.05
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.33
Consensus pattern (71 bp):
AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTAAAAAAAAATTAAAAATACCTCAACGT
GTCTTG
Found at i:76117339 original size:122 final size:124
Alignment explanation
Indices: 76117119--76117365 Score: 320
Period size: 122 Copynumber: 2.0 Consensus size: 124
76117109 ACGTGTCTTG
** * * * *
76117119 AGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATAAGTTCAATTTTGAAAACAGAAACTAAAAATACCTCAGCG
* *
76117184 TGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAA-AAAAATTAAA
* * * *
76117244 AGGCTTAACTCACCTCTCGCAATATGAG-TCAA-TTT-AAAACATAAACTAAAAATACCTCGGCG
1 AGGCTCAACTCACCTCTCGCAATATAAGTTCAATTTTGAAAACAGAAACTAAAAATACCTCAGCG
* * **
76117306 TGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTAAAAAAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAAAAAATTAAA
76117365 A
1 A
76117366 ATACCTCAAC
Statistics
Matches: 106, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
121 11 0.10
122 65 0.61
123 3 0.03
124 3 0.03
125 24 0.23
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.28
Consensus pattern (124 bp):
AGGCTCAACTCACCTCTCGCAATATAAGTTCAATTTTGAAAACAGAAACTAAAAATACCTCAGCG
TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAAAAAATTAAA
Found at i:76117392 original size:71 final size:72
Alignment explanation
Indices: 76117244--76117419 Score: 200
Period size: 71 Copynumber: 2.5 Consensus size: 72
76117234 AAAAATTAAA
* * * * * **
76117244 AGGCTTAACTCACCTCTCGCAATATGAG-TCA--ATTTAAAACATAAACTAAAAATACCTCGGCG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTAAAACAAAAACTAAAAATACCTCAACG
76117306 TGCCCCG
66 TGCCCCG
*
76117313 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTAAAA-AAAAATTAAAAATACCTCAACG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTAAAACAAAAACTAAAAATACCTCAACG
* **
76117377 TGTCTTG
66 TGCCCCG
*
76117384 AGGCTCAACTCA-TCTCTCGCAACATGAGTTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTT
76117420 CCTTGGAAAG
Statistics
Matches: 91, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
69 26 0.29
70 3 0.03
71 55 0.60
72 7 0.08
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (72 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTAAAACAAAAACTAAAAATACCTCAACG
TGCCCCG
Found at i:76126347 original size:38 final size:38
Alignment explanation
Indices: 76126282--76126363 Score: 96
Period size: 38 Copynumber: 2.2 Consensus size: 38
76126272 GAAATATAGA
* *
76126282 AAAAATATAAAGAATTTATAAAGTCGTAAGAA-AATGAT
1 AAAAGTATAAAGAATATATAAAGTCGTAA-AAGAATGAT
* *
76126320 AAAAGTATAAAGAA-ATATAAAATTCGTAAAAGAATTAT
1 AAAAGTATAAAGAATATAT-AAAGTCGTAAAAGAATGAT
76126358 AAAAGT
1 AAAAGT
76126364 TATCATACCA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
37 5 0.13
38 33 0.87
ACGTcount: A:0.60, C:0.02, G:0.12, T:0.26
Consensus pattern (38 bp):
AAAAGTATAAAGAATATATAAAGTCGTAAAAGAATGAT
Found at i:76126649 original size:38 final size:37
Alignment explanation
Indices: 76126607--76126703 Score: 97
Period size: 38 Copynumber: 2.6 Consensus size: 37
76126597 TTTTTATGAT
*
76126607 TTTTATATTGTTTTTTAATTTTTAGTAAATTTTAAATA
1 TTTTATATT-TTTTTTAATTTTTAATAAATTTTAAATA
* ** * **
76126645 TTTTATAATTTTTATTAAAGTTTAATAACTTTTATTTA
1 TTTTAT-ATTTTTTTTAATTTTTAATAAATTTTAAATA
*
76126683 TTTT-TATTTTTTATAATTTTT
1 TTTTATATTTTTTTTAATTTTT
76126704 TGCCACATCT
Statistics
Matches: 47, Mismatches: 11, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
36 12 0.26
37 1 0.02
38 31 0.66
39 3 0.06
ACGTcount: A:0.30, C:0.01, G:0.03, T:0.66
Consensus pattern (37 bp):
TTTTATATTTTTTTTAATTTTTAATAAATTTTAAATA
Found at i:76126702 original size:9 final size:9
Alignment explanation
Indices: 76126589--76126703 Score: 74
Period size: 9 Copynumber: 12.4 Consensus size: 9
76126579 TTTTATTTTA
*
76126589 TTTTATATT
1 TTTTATAAT
*
76126598 TTTTATGAT
1 TTTTATAAT
*
76126607 TTTTATATT
1 TTTTATAAT
*
76126616 GTTTTTTAAT
1 -TTTTATAAT
*
76126626 TTTTAGTAAA
1 TTTTA-TAAT
76126636 TTTTA-AAT
1 TTTTATAAT
76126644 ATTTTATAAT
1 -TTTTATAAT
*
76126654 TTTTATTAAAG
1 TTTTA-T-AAT
* *
76126665 TTTAATAAC
1 TTTTATAAT
*
76126674 TTTTATTTAT
1 TTTTA-TAAT
76126684 TTTTAT--T
1 TTTTATAAT
76126691 TTTTATAAT
1 TTTTATAAT
76126700 TTTT
1 TTTT
76126704 TGCCACATCT
Statistics
Matches: 82, Mismatches: 15, Indels: 18
0.71 0.13 0.16
Matches are distributed among these distances:
7 7 0.09
8 2 0.02
9 40 0.49
10 27 0.33
11 6 0.07
ACGTcount: A:0.29, C:0.01, G:0.03, T:0.67
Consensus pattern (9 bp):
TTTTATAAT
Found at i:76126989 original size:22 final size:20
Alignment explanation
Indices: 76126952--76126999 Score: 53
Period size: 22 Copynumber: 2.3 Consensus size: 20
76126942 ATTTAGTTAC
*
76126952 TTTTTTTTTAAATTTGAG-G
1 TTTTTTTTAAAATTTGAGTG
76126971 ATTTTTTTTAAATAGTTTGAGTG
1 -TTTTTTTTAAA-A-TTTGAGTG
76126994 TTTTTT
1 TTTTTT
76127000 ACACCCTGTC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 10 0.42
21 1 0.04
22 12 0.50
23 1 0.04
ACGTcount: A:0.21, C:0.00, G:0.15, T:0.65
Consensus pattern (20 bp):
TTTTTTTTAAAATTTGAGTG
Found at i:76135714 original size:46 final size:46
Alignment explanation
Indices: 76135664--76136025 Score: 397
Period size: 46 Copynumber: 7.8 Consensus size: 46
76135654 TGGTTGAGCA
76135664 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
76135710 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
76135755 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
76135803 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
76135848 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
76135896 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
76135941 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
76135989 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76136026 GCGGGTTACA
Statistics
Matches: 268, Mismatches: 21, Indels: 54
0.78 0.06 0.16
Matches are distributed among these distances:
42 6 0.02
43 15 0.06
45 9 0.03
46 122 0.46
47 87 0.32
48 9 0.03
50 14 0.05
51 6 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:76135820 original size:93 final size:93
Alignment explanation
Indices: 76135661--76136017 Score: 687
Period size: 93 Copynumber: 3.8 Consensus size: 93
76135651 GGATGGTTGA
76135661 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
76135726 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
76135754 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
76135819 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
76135847 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
76135912 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
76135940 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
76136005 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
76136018 ACTTATGGGC
Statistics
Matches: 261, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 261 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:76137447 original size:13 final size:13
Alignment explanation
Indices: 76137429--76137464 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
76137419 GTGTGTGTGA
76137429 CCACACGGGCTGC
1 CCACACGGGCTGC
76137442 CCACACGGGCTGC
1 CCACACGGGCTGC
76137455 CCACACGGGC
1 CCACACGGGC
76137465 GTGTCCCAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.17, C:0.47, G:0.31, T:0.06
Consensus pattern (13 bp):
CCACACGGGCTGC
Found at i:76141300 original size:12 final size:12
Alignment explanation
Indices: 76141283--76141311 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
76141273 AAATTGTAAT
76141283 TAGCACTTAAAG
1 TAGCACTTAAAG
76141295 TAGCACTTAAAG
1 TAGCACTTAAAG
76141307 TAGCA
1 TAGCA
76141312 AATTTTCCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.24
Consensus pattern (12 bp):
TAGCACTTAAAG
Found at i:76142540 original size:13 final size:13
Alignment explanation
Indices: 76142522--76142548 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
76142512 CCCTGACGGA
76142522 TATGACACATATG
1 TATGACACATATG
76142535 TATGACACATATG
1 TATGACACATATG
76142548 T
1 T
76142549 TAGGCTGCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (13 bp):
TATGACACATATG
Found at i:76146570 original size:21 final size:22
Alignment explanation
Indices: 76146544--76146591 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
76146534 TTCCAGTGAT
*
76146544 ATTTATTATT-AATAAAATTTA
1 ATTTATTATTAAAGAAAATTTA
*
76146565 ATTTATTATTAAAGAAAATTTT
1 ATTTATTATTAAAGAAAATTTA
76146587 ATTTA
1 ATTTA
76146592 ATCCATTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 10 0.42
22 14 0.58
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (22 bp):
ATTTATTATTAAAGAAAATTTA
Found at i:76146760 original size:21 final size:21
Alignment explanation
Indices: 76146721--76146760 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
76146711 AAAATAGAAT
*
76146721 ATAATTTTAAAATTTAATTGG
1 ATAATTTTAAAATTAAATTGG
76146742 ATAATATTTAAAA-TAAATT
1 ATAAT-TTTAAAATTAAATT
76146761 TAAAATGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (21 bp):
ATAATTTTAAAATTAAATTGG
Found at i:76148084 original size:143 final size:140
Alignment explanation
Indices: 76147908--76148292 Score: 442
Period size: 143 Copynumber: 2.8 Consensus size: 140
76147898 GTCCAAAATT
* * *
76147908 TAACACATTTTGAAGTCCAAGATCCAACTTCAAATGTAACTACTTATTCAACTAGTTCATGCAAT
1 TAACAAATTTTGAAGTCCAAGATCAAACTTCAAATGTAACTACTTATTCAACTAATTCATGCAAT
*
76147973 TTTTGTAATTTTACACTTCATATACTAATATTTTTGTTTTAAACAAAT-TCAACCTCTCAACTCT
66 TTTTGTAA--TTACACTTTATATACTAATATTTTTGTTTTAAACAAATGT-AACCTCTCAACTCT
*
76148037 TAAATCTAAGATTC
128 CAAATCTAAGA-TC
* * *
76148051 TAACAAATTCTGAAGTCCAAGGTCAAACTTCAAATGTAACTACTTATTCAACTAACTCATGCAAT
1 TAACAAATTTTGAAGTCCAAGATCAAACTTCAAATGTAACTACTTATTCAACTAATTCATGCAAT
* * * ** * *
76148116 TTTTGTAACTACACTTTATATACTAGTA-TTTT-TTTTAACCACCTGTAGCCTCTTAACTCTCAA
66 TTTTGTAATTACACTTTATATACTAATATTTTTGTTTTAAACAAATGTAACCTCTCAACTCTCAA
*
76148179 GTCTAAGATC
131 ATCTAAGATC
* * * * * * *
76148189 CAATAGATTTTTG-AGCCCAAAATCAAACTTCAAATGT-ACTACTTATCCAACTAACTT-GTGCA
1 TAACA-AATTTTGAAGTCCAAGATCAAACTTCAAATGTAACTACTTATTCAACTAA-TTCATGC-
*
76148251 AATTTTT-TAATTGCACTTTATATACTAATATTTTTGTTTTAA
63 AATTTTTGTAATTACACTTTATATACTAATATTTTTGTTTTAA
76148293 CTAACTGCAA
Statistics
Matches: 207, Mismatches: 29, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
137 39 0.19
138 38 0.18
139 41 0.20
140 5 0.02
141 17 0.08
143 67 0.32
ACGTcount: A:0.34, C:0.19, G:0.08, T:0.39
Consensus pattern (140 bp):
TAACAAATTTTGAAGTCCAAGATCAAACTTCAAATGTAACTACTTATTCAACTAATTCATGCAAT
TTTTGTAATTACACTTTATATACTAATATTTTTGTTTTAAACAAATGTAACCTCTCAACTCTCAA
ATCTAAGATC
Found at i:76148270 original size:137 final size:140
Alignment explanation
Indices: 76147915--76148330 Score: 423
Period size: 139 Copynumber: 3.0 Consensus size: 140
76147905 ATTTAACACA
* * * * **
76147915 TTTTGAAGTCCAAGATCCAACTTCAAATGTAACTACTTATTCAACTAGTTCATGCAATTTTTGTA
1 TTTTG-AGCCCAAAATCAAACTTCAAATGTAACTACTTATCCAACTAACTCATGCAATTTTTGTA
* * * * * * * *
76147980 ATTTTACACTTCATATACTAATATTTTTGTTTTAAACAAATTCAACCTCTCAACTCTTAA-ATCT
65 A--CTACACTTTATATACTAATATTTTTGTTTTAACCAACTGCAACCTCTTAACTCTCAAGTTC-
* * *
76148044 AAGATTCTAACA-AA
127 AAGA-TCCAATAGAT
* * ** *
76148058 TTCTGAAGTCCAAGGTCAAACTTCAAATGTAACTACTTATTCAACTAACTCATGCAATTTTTGTA
1 TTTTG-AGCCCAAAATCAAACTTCAAATGTAACTACTTATCCAACTAACTCATGCAATTTTTGTA
* * * *
76148123 ACTACACTTTATATACTAGTA-TTTT-TTTTAACCACCTGTAGCCTCTTAACTCTCAAG-TCTAA
65 ACTACACTTTATATACTAATATTTTTGTTTTAACCAACTGCAACCTCTTAACTCTCAAGTTC-AA
76148185 GATCCAATAGAT
129 GATCCAATAGAT
**
76148197 TTTTGAGCCCAAAATCAAACTTCAAATGT-ACTACTTATCCAACTAACTTGTGCAAATTTTT-TA
1 TTTTGAGCCCAAAATCAAACTTCAAATGTAACTACTTATCCAACTAACTCATGC-AATTTTTGTA
* * * *
76148260 ATTGCACTTTATATACTAATATTTTTGTTTTAACTAACTGCAACCTCTTAGCTCTCAAGTTCAAG
65 ACTACACTTTATATACTAATATTTTTGTTTTAACCAACTGCAACCTCTTAACTCTCAAGTTCAAG
76148325 ATCCAA
130 ATCCAA
76148331 ATCTATCTGG
Statistics
Matches: 233, Mismatches: 34, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
137 41 0.18
138 37 0.16
139 71 0.30
140 6 0.03
141 17 0.07
143 61 0.26
ACGTcount: A:0.34, C:0.20, G:0.08, T:0.38
Consensus pattern (140 bp):
TTTTGAGCCCAAAATCAAACTTCAAATGTAACTACTTATCCAACTAACTCATGCAATTTTTGTAA
CTACACTTTATATACTAATATTTTTGTTTTAACCAACTGCAACCTCTTAACTCTCAAGTTCAAGA
TCCAATAGAT
Found at i:76148430 original size:22 final size:22
Alignment explanation
Indices: 76148402--76148460 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
76148392 CACGTTAGCG
76148402 AATAAATATATAAATATAAAT-A
1 AATAAATATATAAATA-AAATAA
* *
76148424 AATAAATATTTATATAAAATAA
1 AATAAATATATAAATAAAATAA
76148446 AATAAA-ATAATAAAT
1 AATAAATAT-ATAAAT
76148461 TGAATAATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
21 6 0.19
22 25 0.81
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (22 bp):
AATAAATATATAAATAAAATAA
Found at i:76148930 original size:20 final size:20
Alignment explanation
Indices: 76148907--76148948 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
76148897 TTAAATCAAT
76148907 TTGATTAAAATCAAATAAAA
1 TTGATTAAAATCAAATAAAA
**
76148927 TTGATTGGAATCAAATAAAA
1 TTGATTAAAATCAAATAAAA
76148947 TT
1 TT
76148949 AGGATATAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.52, C:0.05, G:0.10, T:0.33
Consensus pattern (20 bp):
TTGATTAAAATCAAATAAAA
Found at i:76152148 original size:45 final size:45
Alignment explanation
Indices: 76152092--76152252 Score: 182
Period size: 45 Copynumber: 3.6 Consensus size: 45
76152082 GCCCATAGCG
* * *
76152092 TCTTTCAGCTATGGCCTTAGTCAT-TTATATCATGATGCCATAACA
1 TCTTTTAGCTATGGTCTTACTCATCTT-TATCATGATGCCATAACA
* *
76152137 TCTTTTAGCTATGGTCGTACTCATCTTTATCATGATGCCATAGCA
1 TCTTTTAGCTATGGTCTTACTCATCTTTATCATGATGCCATAACA
* * *
76152182 TTTTTTAGCTAT-ATCTTACTCATCTTTATCATGATACCATAACA
1 TCTTTTAGCTATGGTCTTACTCATCTTTATCATGATGCCATAACA
* * ** *
76152226 TATTTCAAATGTGGTCTTACTCATCTT
1 TCTTTTAGCTATGGTCTTACTCATCTT
76152253 GGTGTATAAC
Statistics
Matches: 98, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
44 35 0.36
45 61 0.62
46 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.11, T:0.42
Consensus pattern (45 bp):
TCTTTTAGCTATGGTCTTACTCATCTTTATCATGATGCCATAACA
Found at i:76152222 original size:44 final size:45
Alignment explanation
Indices: 76152119--76152226 Score: 164
Period size: 44 Copynumber: 2.4 Consensus size: 45
76152109 TAGTCATTTA
*
76152119 TATCATGATGCCATAACATCTTTTAGCTATGGTCGTACTCATCTT
1 TATCATGATGCCATAACATCTTTTAGCTATGATCGTACTCATCTT
* * *
76152164 TATCATGATGCCATAGCATTTTTTAGCTAT-ATCTTACTCATCTT
1 TATCATGATGCCATAACATCTTTTAGCTATGATCGTACTCATCTT
*
76152208 TATCATGATACCATAACAT
1 TATCATGATGCCATAACAT
76152227 ATTTCAAATG
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
44 29 0.51
45 28 0.49
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (45 bp):
TATCATGATGCCATAACATCTTTTAGCTATGATCGTACTCATCTT
Found at i:76154985 original size:66 final size:64
Alignment explanation
Indices: 76154821--76154988 Score: 151
Period size: 65 Copynumber: 2.6 Consensus size: 64
76154811 CAGTTCCGAT
* * * * * * *
76154821 CACGGGCTAGACACATGGGCGTGTGGTCAGCCGTGTGGCCAAGTCAGTAGCCTCTTTAATTTTCA
1 CACGGCCTAGACACACGGGCGTGT-CTAAGCCGTGTGGACAAGTCAGTAGCATCCTTAATTTTCA
* * ** *
76154886 CACGGCCTAG-CACACGGGTGTGCCTTGTGGCCGTGTGGACAAGTCAGTATGTATGCCTT-ATTT
1 CACGGCCTAGACACACGGGCGTGTC-T-AAGCCGTGTGGACAAGTCAGTA-GCAT-CCTTAATTT
*
76154949 TGA
62 TCA
76154952 CACGGCCTAGACACACGGGCGTGTCTAAAGCCGTGTG
1 CACGGCCTAGACACACGGGCGTGTCT-AAGCCGTGTG
76154989 AGGCACATGG
Statistics
Matches: 81, Mismatches: 17, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
64 11 0.14
65 28 0.35
66 27 0.33
67 15 0.19
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (64 bp):
CACGGCCTAGACACACGGGCGTGTCTAAGCCGTGTGGACAAGTCAGTAGCATCCTTAATTTTCA
Found at i:76156968 original size:62 final size:62
Alignment explanation
Indices: 76156886--76157002 Score: 171
Period size: 62 Copynumber: 1.9 Consensus size: 62
76156876 GTTTTCCGGT
* * * * *
76156886 TGATCTGATGCTATTTCCTTTTGGTGAGTTTGATATAATTTTGGGTATGGATTGGTTCCTGC
1 TGATATGATGCTATTACCTTTTGATGAATTTGATATAATTTTGGATATGGATTGGTTCCTGC
* *
76156948 TGATATGATGTTATTACCTTTTGATGAATTTGATATAATTTTGGATTTGGATTGG
1 TGATATGATGCTATTACCTTTTGATGAATTTGATATAATTTTGGATATGGATTGG
76157003 CTAACTTTGC
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
62 48 1.00
ACGTcount: A:0.21, C:0.08, G:0.24, T:0.48
Consensus pattern (62 bp):
TGATATGATGCTATTACCTTTTGATGAATTTGATATAATTTTGGATATGGATTGGTTCCTGC
Found at i:76170323 original size:41 final size:40
Alignment explanation
Indices: 76170278--76170441 Score: 204
Period size: 41 Copynumber: 4.0 Consensus size: 40
76170268 AAAGCCTAGT
* * * *
76170278 ATAATACACTGACAAAGAGCTTGCTAGGCAATAGGCCTGAA
1 ATAATACACCGGCAAA-AGCCTGCTAGGCAATAAGCCTGAA
*
76170319 ATAATACACCGGCATACAGCCTGCTAGGCAATAAGCCTGAA
1 ATAATACACCGGCA-AAAGCCTGCTAGGCAATAAGCCTGAA
*
76170360 ATAATACACCGGCATAAAGCCTGCTAGGCAATAAGCCTGAT
1 ATAATACACCGGCA-AAAGCCTGCTAGGCAATAAGCCTGAA
* *
76170401 ATAATTCACCAGCATAAAGCCTGCTAGGC-ATAAAGCCTGAA
1 ATAATACACCGGCA-AAAGCCTGCTAGGCAAT-AAGCCTGAA
76170442 TATCACTAAT
Statistics
Matches: 111, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
40 2 0.02
41 108 0.97
42 1 0.01
ACGTcount: A:0.38, C:0.24, G:0.20, T:0.19
Consensus pattern (40 bp):
ATAATACACCGGCAAAAGCCTGCTAGGCAATAAGCCTGAA
Found at i:76176950 original size:17 final size:17
Alignment explanation
Indices: 76176924--76176957 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
76176914 CCAATTTCAC
* *
76176924 TTACACACAAATCAAAA
1 TTACAAACAAAACAAAA
76176941 TTACAAACAAAACAAAA
1 TTACAAACAAAACAAAA
76176958 ATAATTTAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.65, C:0.21, G:0.00, T:0.15
Consensus pattern (17 bp):
TTACAAACAAAACAAAA
Found at i:76178113 original size:41 final size:41
Alignment explanation
Indices: 76178060--76178206 Score: 199
Period size: 41 Copynumber: 3.6 Consensus size: 41
76178050 ACACCAACAC
* * * *
76178060 AAGCCTGCTAGGCAATAGGACTGAAATAATACACCGGCATA
1 AAGCCTGCTAGGCAATAAGCCTGATATAATTCACCGGCATA
*
76178101 AAGCCTGCTAGGCAATAAGCCTGATGTAATTCACCGGCATA
1 AAGCCTGCTAGGCAATAAGCCTGATATAATTCACCGGCATA
* *
76178142 AGGCCTGCTAGGC-ATAAAGCCTGATATAATTCACCAGCATA
1 AAGCCTGCTAGGCAAT-AAGCCTGATATAATTCACCGGCATA
76178183 AAGCCTGCTAGGC-ATAAAGCCTGA
1 AAGCCTGCTAGGCAAT-AAGCCTGA
76178207 ATATCACTAA
Statistics
Matches: 96, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
40 2 0.02
41 94 0.98
ACGTcount: A:0.35, C:0.24, G:0.22, T:0.20
Consensus pattern (41 bp):
AAGCCTGCTAGGCAATAAGCCTGATATAATTCACCGGCATA
Found at i:76183857 original size:40 final size:40
Alignment explanation
Indices: 76183806--76183993 Score: 274
Period size: 40 Copynumber: 4.7 Consensus size: 40
76183796 AGCTACTGCT
76183806 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
**
76183846 CAAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
76183886 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * * *
76183926 CAAATGCCTTCGGGACTT-GCCCGG-AACTAGTCACTAGCG
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
76183965 CAGATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
76183994 CATCCAAATA
Statistics
Matches: 133, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
39 32 0.24
40 100 0.75
41 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:76183905 original size:80 final size:79
Alignment explanation
Indices: 76183806--76183993 Score: 306
Period size: 80 Copynumber: 2.4 Consensus size: 79
76183796 AGCTACTGCT
76183806 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTT-GCCCGG
*
76183871 AAATAGTAACTCGCA
65 AAATAGTAACTAGCA
76183886 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTGCCCGG
* * *
76183950 AACTAGTCACTAGCG
65 AAATAGTAACTAGCA
*
76183965 CAGATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
76183994 CATCCAAATA
Statistics
Matches: 101, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
78 2 0.02
79 42 0.42
80 55 0.54
81 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.23
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTGCCCGGA
AATAGTAACTAGCA
Found at i:76191954 original size:40 final size:40
Alignment explanation
Indices: 76191903--76192047 Score: 256
Period size: 40 Copynumber: 3.6 Consensus size: 40
76191893 AGCTACTGCT
*
76191903 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
76191943 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ACTTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAAC-TCGCA
76191983 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
76192023 CCAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
76192048 TTATCATCCA
Statistics
Matches: 101, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
39 2 0.02
40 97 0.96
41 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:76198145 original size:47 final size:47
Alignment explanation
Indices: 76198073--76198201 Score: 143
Period size: 47 Copynumber: 2.7 Consensus size: 47
76198063 TTAGGATTCT
* * * *
76198073 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGGATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCA
* * * *
76198120 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGGATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
** *
76198167 ACATGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGGATGTGAAAGTGTATATATGTGATAAG
76198202 TCCCGAAGGG
Statistics
Matches: 67, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
46 1 0.01
47 66 0.99
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.26
Consensus pattern (47 bp):
ATGTGATGGATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
Found at i:76198376 original size:37 final size:37
Alignment explanation
Indices: 76198320--76198398 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
76198310 CCGAGCTCCA
* * *
76198320 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
76198357 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
76198394 AAGAC
1 AAGAC
76198399 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:76200043 original size:41 final size:40
Alignment explanation
Indices: 76199918--76200057 Score: 162
Period size: 40 Copynumber: 3.5 Consensus size: 40
76199908 AATTTCGTTT
* *
76199918 GGCACTTAGTGTGCG-TATCGAGATAGTTTCGGCTCTATAAA
1 GGCACTTAGTGTGCGAGATCGAGATAGATTCGG--CTATAAA
* *
76199959 -GCACTTAGTGTGCGA-ATCGAAATAGATTCGGCTATATAT
1 GGCACTTAGTGTGCGAGATCGAGATAGATTCGGCTATA-AA
*
76199998 GGCACTTAGTGTGCGAGA-CTGAGATAGCTTCGGCTATGAAA
1 GGCACTTAGTGTGCGAGATC-GAGATAGATTCGGCTAT-AAA
76200039 GGCACTTAGTGTGCGAGAT
1 GGCACTTAGTGTGCGAGAT
76200058 TATAATAGCT
Statistics
Matches: 86, Mismatches: 6, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
38 5 0.06
39 1 0.01
40 44 0.51
41 35 0.41
42 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (40 bp):
GGCACTTAGTGTGCGAGATCGAGATAGATTCGGCTATAAA
Found at i:76200051 original size:81 final size:82
Alignment explanation
Indices: 76199917--76200099 Score: 207
Period size: 81 Copynumber: 2.2 Consensus size: 82
76199907 CAATTTCGTT
* *
76199917 TGGCACTTAGTGTGCG-TATCGAGATAGTTTCGGCTCTATAAAGCACTTAGTGTGCGA-ATCGA-
1 TGGCACTTAGTGTGCGAGATCGAGATAGCTTCGGC-CTATAAAGCACTTAGTGTGCGAGAT-GAT
*
76199979 AATAGATTCGGCTAT-ATA
64 AATAGATTCAGCTATGATA
*
76199997 TGGCACTTAGTGTGCGAGA-CTGAGATAGCTTCGG-CTATGAAAGGCACTTAGTGTGCGAGATTA
1 TGGCACTTAGTGTGCGAGATC-GAGATAGCTTCGGCCTAT-AAA-GCACTTAGTGTGCGAGATGA
* * * *
76200060 TAATAGCTTTAGCTATGCTT
63 TAATAGATTCAGCTATGATA
76200080 TGGCACTTAGTGTGCGAGAT
1 TGGCACTTAGTGTGCGAGAT
76200100 ATCAAGTATT
Statistics
Matches: 87, Mismatches: 8, Indels: 12
0.81 0.07 0.11
Matches are distributed among these distances:
79 4 0.05
80 20 0.23
81 29 0.33
82 14 0.16
83 20 0.23
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (82 bp):
TGGCACTTAGTGTGCGAGATCGAGATAGCTTCGGCCTATAAAGCACTTAGTGTGCGAGATGATAA
TAGATTCAGCTATGATA
Found at i:76200075 original size:41 final size:41
Alignment explanation
Indices: 76199959--76200099 Score: 128
Period size: 41 Copynumber: 3.4 Consensus size: 41
76199949 GCTCTATAAA
* * *
76199959 GCACTTAGTGTGCGA-ATCGAAATAGATTCGGCTAT--ATATG
1 GCACTTAGTGTGCGAGAT-GAAATAGCTTCAGCTATGCA-AAG
* *
76199999 GCACTTAGTGTGCGAGACTGAGATAGCTTCGGCTATG-AAAG
1 GCACTTAGTGTGCGAGA-TGAAATAGCTTCAGCTATGCAAAG
* * ***
76200040 GCACTTAGTGTGCGAGATTATAATAGCTTTAGCTATGCTTTG
1 GCACTTAGTGTGCGAGATGA-AATAGCTTCAGCTATGCAAAG
76200082 GCACTTAGTGTGCGAGAT
1 GCACTTAGTGTGCGAGAT
76200100 ATCAAGTATT
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
40 17 0.20
41 48 0.56
42 21 0.24
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (41 bp):
GCACTTAGTGTGCGAGATGAAATAGCTTCAGCTATGCAAAG
Found at i:76204756 original size:59 final size:60
Alignment explanation
Indices: 76204692--76204827 Score: 163
Period size: 60 Copynumber: 2.3 Consensus size: 60
76204682 CCAACTGTGT
*
76204692 TGATATGGGCAAGGCCCAATATA-TCTCGACTTG-TAT-A-GGGCTATGGCCCAGATTGATAC
1 TGATATGGGCAAGGCCCAATATACTCT-G--TTGCTATAAGGGGCTATGGCCCAGATTAATAC
* * * *
76204751 TGATATGGGCTAGGCCCAGTATACTCTGTTGCTGTAAGGGGCTATGGCCCAGATTAATAT
1 TGATATGGGCAAGGCCCAATATACTCTGTTGCTATAAGGGGCTATGGCCCAGATTAATAC
76204811 TGATATGGGCTAAGGCC
1 TGATATGGGC-AAGGCC
76204828 TAGTTAACAC
Statistics
Matches: 66, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
57 3 0.05
58 2 0.03
59 23 0.35
60 33 0.50
61 5 0.08
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (60 bp):
TGATATGGGCAAGGCCCAATATACTCTGTTGCTATAAGGGGCTATGGCCCAGATTAATAC
Found at i:76206413 original size:40 final size:40
Alignment explanation
Indices: 76206367--76206591 Score: 414
Period size: 40 Copynumber: 5.6 Consensus size: 40
76206357 AAACACATTA
* *
76206367 GCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATT
*
76206407 GCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATT
*
76206447 GCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATT
76206487 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATT
76206527 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATT
76206567 GCCTTCGGGTCTTAGCCCGGATATA
1 GCCTTCGGGTCTTAGCCCGGATATA
76206592 ATCCAATGCT
Statistics
Matches: 179, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 179 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.29
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATT
Found at i:76214469 original size:15 final size:15
Alignment explanation
Indices: 76214450--76214500 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
76214440 TCCACCAAAT
*
76214450 AAAATATTATTTTTT
1 AAAATATTATTTTTA
* ** *
76214465 AAAATTTTAAATTAA
1 AAAATATTATTTTTA
76214480 AAAATATTATTTTTA
1 AAAATATTATTTTTA
76214495 AAAATA
1 AAAATA
76214501 AAAAACACAT
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
AAAATATTATTTTTA
Found at i:76222086 original size:13 final size:13
Alignment explanation
Indices: 76222070--76222107 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
76222060 GGGCCACACC
*
76222070 CATGGGCGTGTGG
1 CATGGTCGTGTGG
76222083 CATGGTCGTGTGG
1 CATGGTCGTGTGG
76222096 CATGGTCGTGTG
1 CATGGTCGTGTG
76222108 TCCCCTGCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.08, C:0.16, G:0.47, T:0.29
Consensus pattern (13 bp):
CATGGTCGTGTGG
Found at i:76222713 original size:25 final size:25
Alignment explanation
Indices: 76222685--76222733 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
76222675 GTTCCAAATG
*
76222685 CATATAAAT-TTATATTATATATATA
1 CATATAAATATT-TATTATAAATATA
*
76222710 CATATATATATTTATTATAAATAT
1 CATATAAATATTTATTATAAATAT
76222734 CACCTAACCG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 19 0.90
26 2 0.10
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (25 bp):
CATATAAATATTTATTATAAATATA
Found at i:76234665 original size:31 final size:30
Alignment explanation
Indices: 76234630--76234722 Score: 125
Period size: 31 Copynumber: 3.0 Consensus size: 30
76234620 CTTGTAACTT
*
76234630 GTAGCC-GAAGCTATCACTATTCACTGATCAG
1 GTAGCCAG-AGCTACCACT-TTCACTGATCAG
76234661 GTAGCCAGAGCTACCACTTCTCACTGATCAG
1 GTAGCCAGAGCTACCACTT-TCACTGATCAG
*
76234692 GTAGCTAGAGCTACCACTTTTCACTGATCAG
1 GTAGCCAGAGCTACCAC-TTTCACTGATCAG
76234723 ATTACTTATT
Statistics
Matches: 57, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
30 1 0.02
31 53 0.93
32 3 0.05
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (30 bp):
GTAGCCAGAGCTACCACTTTCACTGATCAG
Found at i:76235010 original size:105 final size:104
Alignment explanation
Indices: 76234817--76235083 Score: 365
Period size: 105 Copynumber: 2.5 Consensus size: 104
76234807 TCCTCATTGA
* ** *
76234817 AATACCATACCTACATTTCACAACTCGGTATGGGA-AATGCCATACCTACGTTTCTTAACTCAGT
1 AATACCATACCTACATTTCACAACTCGGTAT--GATAATACCATACCTACGTTTCACAACTCAAT
*
76234881 ATGGATAATACTATAACTACGTTTCACAACTCAGTATGGTT
64 ATGGATAATACCATAACTACGTTTCACAACTCAGTATGGTT
* *
76234922 AATACCATACCTACATTTAACAACTCGGTATGATTATTACCATACCTACGTTTCACAACTCAATA
1 AATACCATACCTACATTTCACAACTCGGTATGA-TAATACCATACCTACGTTTCACAACTCAATA
* * * *
76234987 TGGATGATACCCTACCTATGTTTCACAACTCAGTATGGTT
65 TGGATAATACCATAACTACGTTTCACAACTCAGTATGGTT
* * *
76235027 AATACCATACCTACGTTTCACAACTCAGTATGGATGATACCATACCTACGTTTCACA
1 AATACCATACCTACATTTCACAACTCGGTAT-GATAATACCATACCTACGTTTCACA
76235084 CTTTGCCATG
Statistics
Matches: 143, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
103 2 0.01
105 139 0.97
106 2 0.01
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.31
Consensus pattern (104 bp):
AATACCATACCTACATTTCACAACTCGGTATGATAATACCATACCTACGTTTCACAACTCAATAT
GGATAATACCATAACTACGTTTCACAACTCAGTATGGTT
Found at i:76235096 original size:35 final size:35
Alignment explanation
Indices: 76234818--76235083 Score: 320
Period size: 35 Copynumber: 7.6 Consensus size: 35
76234808 CCTCATTGAA
* * *
76234818 ATACCATACCTACATTTCACAACTCGGTATGGGA-A
1 ATACCATACCTACGTTTCACAACTCAGTAT-GGATG
* ** *
76234853 ATGCCATACCTACGTTTCTTAACTCAGTATGGATA
1 ATACCATACCTACGTTTCACAACTCAGTATGGATG
* * * *
76234888 ATACTATAACTACGTTTCACAACTCAGTATGGTTA
1 ATACCATACCTACGTTTCACAACTCAGTATGGATG
* * * *
76234923 ATACCATACCTACATTTAACAACTCGGTAT-GATT
1 ATACCATACCTACGTTTCACAACTCAGTATGGATG
*
76234957 ATTACCATACCTACGTTTCACAACTCAATATGGATG
1 A-TACCATACCTACGTTTCACAACTCAGTATGGATG
* * * *
76234993 ATACCCTACCTATGTTTCACAACTCAGTATGGTTA
1 ATACCATACCTACGTTTCACAACTCAGTATGGATG
76235028 ATACCATACCTACGTTTCACAACTCAGTATGGATG
1 ATACCATACCTACGTTTCACAACTCAGTATGGATG
76235063 ATACCATACCTACGTTTCACA
1 ATACCATACCTACGTTTCACA
76235084 CTTTGCCATG
Statistics
Matches: 196, Mismatches: 32, Indels: 6
0.84 0.14 0.03
Matches are distributed among these distances:
34 6 0.03
35 186 0.95
36 4 0.02
ACGTcount: A:0.32, C:0.25, G:0.12, T:0.31
Consensus pattern (35 bp):
ATACCATACCTACGTTTCACAACTCAGTATGGATG
Found at i:76239183 original size:11 final size:11
Alignment explanation
Indices: 76239167--76239200 Score: 50
Period size: 12 Copynumber: 3.0 Consensus size: 11
76239157 ATACATAATA
76239167 TAATTTAATTT
1 TAATTTAATTT
76239178 TAATTTTAATTT
1 TAA-TTTAATTT
*
76239190 TAATCTAATTT
1 TAATTTAATTT
76239201 ATTTTGGGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (11 bp):
TAATTTAATTT
Found at i:76247018 original size:17 final size:17
Alignment explanation
Indices: 76246993--76247026 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
76246983 GGATGGATAT
*
76246993 AAAGCTTAGATTATAAA
1 AAAGATTAGATTATAAA
*
76247010 AAAGATTAGATTGTAAA
1 AAAGATTAGATTATAAA
76247027 GTTAATTTAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.53, C:0.03, G:0.15, T:0.29
Consensus pattern (17 bp):
AAAGATTAGATTATAAA
Found at i:76257254 original size:49 final size:47
Alignment explanation
Indices: 76257005--76257421 Score: 611
Period size: 47 Copynumber: 8.7 Consensus size: 47
76256995 CCCTTCGTGA
* * * * * * *
76257005 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGG-
1 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
76257051 CTCTGTCACATATATACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CT-TATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
76257099 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76257146 CTTATCATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76257193 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76257240 CCTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76257287 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTAT--CATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76257336 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTAT--CATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76257385 CCTATCACATATATATACACTTTCACATTCATCACAT
1 CTTAT--CATATATATACACTTTCACATTCATCACAT
76257422 AGAATCCTAA
Statistics
Matches: 351, Mismatches: 16, Indels: 5
0.94 0.04 0.01
Matches are distributed among these distances:
46 2 0.01
47 220 0.63
48 2 0.01
49 127 0.36
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:76261223 original size:18 final size:18
Alignment explanation
Indices: 76261190--76261240 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
76261180 GGGCCAATTT
76261190 GGGCTGTGTGGG-CCACAC
1 GGGC-GTGTGGGCCCACAC
*
76261208 GGGCGTGTGGGCCCACAT
1 GGGCGTGTGGGCCCACAC
* *
76261226 GGGCATGTGAGCCCA
1 GGGCGTGTGGGCCCA
76261241 ACTTGTTTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
17 7 0.24
18 22 0.76
ACGTcount: A:0.14, C:0.27, G:0.43, T:0.16
Consensus pattern (18 bp):
GGGCGTGTGGGCCCACAC
Found at i:76263506 original size:35 final size:35
Alignment explanation
Indices: 76263432--76263521 Score: 99
Period size: 35 Copynumber: 2.6 Consensus size: 35
76263422 TTGGTTGGAT
* *
76263432 AAATGGCCTACTAACTCTACGAAGTGGAATCACGA
1 AAATGGTCTACTAGCTCTACGAAGTGGAATCACGA
* ** * *
76263467 AAATGGTCTACTAGCTCTACGGAGTGTCATCATGG
1 AAATGGTCTACTAGCTCTACGAAGTGGAATCACGA
* *
76263502 AAATGATCTACTAGTTCTAC
1 AAATGGTCTACTAGCTCTAC
76263522 ATAGTAACAC
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 46 1.00
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (35 bp):
AAATGGTCTACTAGCTCTACGAAGTGGAATCACGA
Found at i:76264828 original size:87 final size:87
Alignment explanation
Indices: 76264689--76264854 Score: 287
Period size: 87 Copynumber: 1.9 Consensus size: 87
76264679 ATCAATGGCT
*
76264689 AACATGGATATTGTAGGAATAGACAAGCGAGACATCACGGAATCTATGTCGACTTCTTTGATGCG
1 AACATGGATATTGTAGGAAGAGACAAGCGAGACATCACGGAATCTATGTCGACTTCTTTGATGCG
76264754 GTATCATGCATATAGAATGGTA
66 GTATCATGCATATAGAATGGTA
* * * *
76264776 AACATGGATATTGTGGGAAGGGACAAGCGAGACCTCACGGAATCTATGTCGACTTCTTTGATGTG
1 AACATGGATATTGTAGGAAGAGACAAGCGAGACATCACGGAATCTATGTCGACTTCTTTGATGCG
76264841 GTATCATGCATATA
66 GTATCATGCATATA
76264855 AAAAAGCACC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
87 74 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (87 bp):
AACATGGATATTGTAGGAAGAGACAAGCGAGACATCACGGAATCTATGTCGACTTCTTTGATGCG
GTATCATGCATATAGAATGGTA
Found at i:76268937 original size:16 final size:16
Alignment explanation
Indices: 76268916--76268948 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
76268906 AAAAGTAAAA
76268916 TTTTGCTATTAGTTTT
1 TTTTGCTATTAGTTTT
76268932 TTTTGCTATTAGTTTT
1 TTTTGCTATTAGTTTT
76268948 T
1 T
76268949 GTGTTATATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.06, G:0.12, T:0.70
Consensus pattern (16 bp):
TTTTGCTATTAGTTTT
Found at i:76269150 original size:30 final size:30
Alignment explanation
Indices: 76269114--76269174 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
76269104 TGTGGCTTAG
76269114 TGTGTGTTCTCCAATTTAATCATTTTAATT
1 TGTGTGTTCTCCAATTTAATCATTTTAATT
76269144 TGTGTGTTCTCCAATTTAATCATTTTAATT
1 TGTGTGTTCTCCAATTTAATCATTTTAATT
76269174 T
1 T
76269175 ACATACTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.23, C:0.13, G:0.10, T:0.54
Consensus pattern (30 bp):
TGTGTGTTCTCCAATTTAATCATTTTAATT
Found at i:76270678 original size:23 final size:21
Alignment explanation
Indices: 76270636--76270684 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 21
76270626 TAACCAAATT
*
76270636 TAAAATTTATCTAAATTAAAA
1 TAAAATTTATCTAAAATAAAA
*
76270657 TAAAATTATATGTAATAATAAAA
1 TAAAATT-TATCTAA-AATAAAA
76270680 TAAAA
1 TAAAA
76270685 GAAATTGAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 7 0.29
22 6 0.25
23 11 0.46
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (21 bp):
TAAAATTTATCTAAAATAAAA
Found at i:76275081 original size:20 final size:20
Alignment explanation
Indices: 76275045--76275093 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
76275035 CAAGACTATA
76275045 AAAAAATTA-AA--AATTCT
1 AAAAAATTATAATGAATTCT
*
76275062 AAAAATTTATAATGAATTCT
1 AAAAAATTATAATGAATTCT
76275082 AAAAAATTATAA
1 AAAAAATTATAA
76275094 ATACACATCT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 8 0.30
18 2 0.07
20 17 0.63
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (20 bp):
AAAAAATTATAATGAATTCT
Found at i:76278459 original size:43 final size:43
Alignment explanation
Indices: 76278406--76278489 Score: 141
Period size: 43 Copynumber: 2.0 Consensus size: 43
76278396 GTTTTTAGTC
*
76278406 ATTTTTATGTTTCCAAGATCGTAATAGCTTAATTTAGCTATTA
1 ATTTTCATGTTTCCAAGATCGTAATAGCTTAATTTAGCTATTA
**
76278449 ATTTTCATGTTTCTGAGATCGTAATAGCTTAATTTAGCTAT
1 ATTTTCATGTTTCCAAGATCGTAATAGCTTAATTTAGCTAT
76278490 CTCGGGGACT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.29, C:0.12, G:0.13, T:0.46
Consensus pattern (43 bp):
ATTTTCATGTTTCCAAGATCGTAATAGCTTAATTTAGCTATTA
Found at i:76278904 original size:104 final size:104
Alignment explanation
Indices: 76278780--76278985 Score: 412
Period size: 104 Copynumber: 2.0 Consensus size: 104
76278770 GCCTAGGGAT
76278780 GAAATCGTCATTAATTAAAATTATAGGGGCAAAATGGTAATTTTGCCTAATAAATGAATTGGACT
1 GAAATCGTCATTAATTAAAATTATAGGGGCAAAATGGTAATTTTGCCTAATAAATGAATTGGACT
76278845 GAATTGAGTATAAATTGTATTAAATTGATGTTAAATTAG
66 GAATTGAGTATAAATTGTATTAAATTGATGTTAAATTAG
76278884 GAAATCGTCATTAATTAAAATTATAGGGGCAAAATGGTAATTTTGCCTAATAAATGAATTGGACT
1 GAAATCGTCATTAATTAAAATTATAGGGGCAAAATGGTAATTTTGCCTAATAAATGAATTGGACT
76278949 GAATTGAGTATAAATTGTATTAAATTGATGTTAAATT
66 GAATTGAGTATAAATTGTATTAAATTGATGTTAAATT
76278986 TACTCGTATA
Statistics
Matches: 102, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
104 102 1.00
ACGTcount: A:0.40, C:0.06, G:0.18, T:0.36
Consensus pattern (104 bp):
GAAATCGTCATTAATTAAAATTATAGGGGCAAAATGGTAATTTTGCCTAATAAATGAATTGGACT
GAATTGAGTATAAATTGTATTAAATTGATGTTAAATTAG
Found at i:76282592 original size:25 final size:25
Alignment explanation
Indices: 76282536--76282593 Score: 66
Period size: 23 Copynumber: 2.4 Consensus size: 25
76282526 GTGTCACATA
* *
76282536 TTATATGGCTCTCCAGAGCTTCCTG
1 TTATATGGCTCACCAGAACTTCCTG
**
76282561 --ATATGGCTCACTTGAACTTCCTG
1 TTATATGGCTCACCAGAACTTCCTG
76282584 TTATATGGCT
1 TTATATGGCT
76282594 ATCTGGAGCT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
23 19 0.70
25 8 0.30
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.38
Consensus pattern (25 bp):
TTATATGGCTCACCAGAACTTCCTG
Found at i:76282719 original size:23 final size:26
Alignment explanation
Indices: 76282693--76282743 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
76282683 AGCCCGAATA
76282693 AGCTTCCTGA-T-A-GGCTCTTTGTG
1 AGCTTCCTGATTAATGGCTCTTTGTG
76282716 AGCTTCCTGATTAATGGCTCTTTGTG
1 AGCTTCCTGATTAATGGCTCTTTGTG
76282742 AG
1 AG
76282744 TCTCTTGTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
23 10 0.40
24 1 0.04
25 1 0.04
26 13 0.52
ACGTcount: A:0.16, C:0.20, G:0.25, T:0.39
Consensus pattern (26 bp):
AGCTTCCTGATTAATGGCTCTTTGTG
Found at i:76283193 original size:6 final size:6
Alignment explanation
Indices: 76283182--76283219 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
76283172 CGGTATGATT
*
76283182 TGTATA TGTATA TGTATA TGTATA GGTATA TGTATA TG
1 TGTATA TGTATA TGTATA TGTATA TGTATA TGTATA TG
76283220 GGAATTTGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.32, C:0.00, G:0.21, T:0.47
Consensus pattern (6 bp):
TGTATA
Found at i:76285379 original size:21 final size:21
Alignment explanation
Indices: 76285338--76285380 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
76285328 TTGCCCCTTG
*
76285338 GGAGGCTAGAGGGAAAAAAAT
1 GGAGGCTAGAGGAAAAAAAAT
76285359 GGAGGCTAGA-GAAAAAGAAAT
1 GGAGGCTAGAGGAAAAA-AAAT
76285380 G
1 G
76285381 AATAAGAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.49, C:0.05, G:0.37, T:0.09
Consensus pattern (21 bp):
GGAGGCTAGAGGAAAAAAAAT
Found at i:76287860 original size:29 final size:29
Alignment explanation
Indices: 76287818--76287880 Score: 117
Period size: 29 Copynumber: 2.2 Consensus size: 29
76287808 CTGCCACTAC
76287818 CATTGAACCTGTAAAGGGGGGAGTAGTTG
1 CATTGAACCTGTAAAGGGGGGAGTAGTTG
76287847 CATTGAACCTGTAAAGGGGGGAGTAGTTG
1 CATTGAACCTGTAAAGGGGGGAGTAGTTG
*
76287876 TATTG
1 CATTG
76287881 TTGTTTATGC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.27, C:0.10, G:0.37, T:0.27
Consensus pattern (29 bp):
CATTGAACCTGTAAAGGGGGGAGTAGTTG
Found at i:76288300 original size:68 final size:68
Alignment explanation
Indices: 76288205--76288456 Score: 237
Period size: 68 Copynumber: 3.7 Consensus size: 68
76288195 TAGATCAATT
* * * * *
76288205 GTGATCTTAAATTAGCAAGA-TGCAAAATAGGGACACGATCTTAAATCTACATGTTATGTAGATC
1 GTGATCTTAAATCAGC-GGACTGTAAAATAAGGACACGATCTTAAATCTACATGCTATGTAGAT-
76288269 T-GTC
64 TAGTC
* * *
76288273 GTGATATTAAATCAGCGGACTGTAAAATAAAGG-CACGATCTTTAAATCAACTTGCTATGTAGAT
1 GTGATCTTAAATCAGCGGACTGTAAAAT-AAGGACACGATC-TTAAATCTACATGCTATGTAGAT
76288337 TAGTC
64 TAGTC
* * * * * * *
76288342 GTGACCTAAAATCAGCGTACTATAAAA-AA-GAGACGTTATCTTAAATCTGCGTGCTATGTAGAT
1 GTGATCTTAAATCAGCGGACTGTAAAATAAGGACACG--ATCTTAAATCTACATGCTATGTAGAT
76288405 TAG-C
64 TAGTC
* * *
76288409 TGTGATCTTAAATCAGCGGGCTGCAAAATAAGGAAACGATCTTAAATC
1 -GTGATCTTAAATCAGCGGACTGTAAAATAAGGACACGATCTTAAATC
76288457 GATAACTCTA
Statistics
Matches: 150, Mismatches: 24, Indels: 20
0.77 0.12 0.10
Matches are distributed among these distances:
66 1 0.01
67 8 0.05
68 83 0.55
69 53 0.35
70 5 0.03
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.29
Consensus pattern (68 bp):
GTGATCTTAAATCAGCGGACTGTAAAATAAGGACACGATCTTAAATCTACATGCTATGTAGATTA
GTC
Found at i:76290819 original size:41 final size:41
Alignment explanation
Indices: 76290774--76290857 Score: 159
Period size: 41 Copynumber: 2.0 Consensus size: 41
76290764 ATTCGTTGTT
*
76290774 CAAATACATAGAAAACAATTACATGTTTACTACAATATAGG
1 CAAATACATAGAAAACAATCACATGTTTACTACAATATAGG
76290815 CAAATACATAGAAAACAATCACATGTTTACTACAATATAGG
1 CAAATACATAGAAAACAATCACATGTTTACTACAATATAGG
76290856 CA
1 CA
76290858 CATCTCCCAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.49, C:0.17, G:0.10, T:0.25
Consensus pattern (41 bp):
CAAATACATAGAAAACAATCACATGTTTACTACAATATAGG
Found at i:76293294 original size:41 final size:41
Alignment explanation
Indices: 76293249--76293332 Score: 159
Period size: 41 Copynumber: 2.0 Consensus size: 41
76293239 ATTCGTTGTT
*
76293249 CAAATACATAGAAAACAATTACATGTTTACTACAATATAGG
1 CAAATACATAGAAAACAATCACATGTTTACTACAATATAGG
76293290 CAAATACATAGAAAACAATCACATGTTTACTACAATATAGG
1 CAAATACATAGAAAACAATCACATGTTTACTACAATATAGG
76293331 CA
1 CA
76293333 CATCTCCCAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.49, C:0.17, G:0.10, T:0.25
Consensus pattern (41 bp):
CAAATACATAGAAAACAATCACATGTTTACTACAATATAGG
Found at i:76295434 original size:18 final size:19
Alignment explanation
Indices: 76295403--76295439 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
76295393 GAATAAAAAT
76295403 ATTAATTAAACT-AATTAA
1 ATTAATTAAACTAAATTAA
76295421 ATTAA-TAAACCTAAATTAA
1 ATTAATTAAA-CTAAATTAA
76295440 CCTAATGGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 4 0.24
18 7 0.41
19 6 0.35
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (19 bp):
ATTAATTAAACTAAATTAA
Found at i:76302584 original size:81 final size:81
Alignment explanation
Indices: 76302483--76302637 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
76302473 AATCATCCAC
* * *
76302483 ATCTATACTACTATATAAAAGAT-AGGCCTAAAGCCTTCCTTAAAAGATA-ATTTTCCATTCTTT
1 ATCTATACTACTATATAAAAGATAAGCCCTAAAGCCTTCCTAAAAAGATACA-TGTCCATTCTTT
*
76302546 TATTTTGCATCAAAAAA
65 TATTTCGCATCAAAAAA
* * * *
76302563 ATCTATACTTACTGTATAAAAGTTAAGCCCTAAGGCCTTCGTAAAAAGATACATGTCCATTCTTT
1 ATCTATAC-TACTATATAAAAGATAAGCCCTAAAGCCTTCCTAAAAAGATACATGTCCATTCTTT
*
76302628 TCTTTCGCAT
65 TATTTCGCAT
76302638 TAGAAAATAA
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
80 8 0.13
81 13 0.21
82 41 0.65
83 1 0.02
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.36
Consensus pattern (81 bp):
ATCTATACTACTATATAAAAGATAAGCCCTAAAGCCTTCCTAAAAAGATACATGTCCATTCTTTT
ATTTCGCATCAAAAAA
Found at i:76303143 original size:174 final size:177
Alignment explanation
Indices: 76302879--76303216 Score: 445
Period size: 174 Copynumber: 1.9 Consensus size: 177
76302869 ACATCTCCCA
* ** * *
76302879 ATTCTTTTTTTTTCTTTTCTTTTGGCATGAGAAAATAACGGCTAAATTTCAATTCTAATCCCTCT
1 ATTCTTTTTTTTTC--TTCTTTTGACACAAGAAAATAACGACTAAATTTCAATTCTAATCCATCT
* * *
76302944 ATTTTTAAAGATTATATAAAGAATGGTTAAATTTTAGTTT-TGAT-ATTATATTTT-CTCAATTT
64 ATTTTTAAAGATTATATAAAGAATGGTCAAATTTTAGTTTCT-ATCACTATATTTTGCTCAAATT
* *
76303006 TGAGATTTAATGTCTATACTTCAATTTTGACATAATTTAGGTACTTGTCC
128 TGAGACTTAATCTCTATACTTCAATTTTGACATAATTTAGGTACTTGTCC
*
76303056 ATTCTTTTTTTTTC-TCTTTTGACACAAGAAAATAATGACTAAATTTCAATTCTAATCCATCTAA
1 ATTCTTTTTTTTTCTTCTTTTGACACAAGAAAATAACGACTAAATTTCAATTCTAATCCATCT-A
* * * *
76303120 TTGTTT-AAGTTTATAT-GAGAATGGTCAAATTTTAGTTTCTATCCCTATATTTTGCTTAAATTT
65 TT-TTTAAAGATTATATAAAGAATGGTCAAATTTTAGTTTCTATCACTATATTTTGCTCAAATTT
*
76303183 GAGACTTAATCTCTATACTTTAATTTTGACATAA
129 GAGACTTAATCTCTATACTTCAATTTTGACATAA
76303217 CTTGAGTGCC
Statistics
Matches: 140, Mismatches: 16, Indels: 11
0.84 0.10 0.07
Matches are distributed among these distances:
174 64 0.46
175 21 0.15
176 41 0.29
177 14 0.10
ACGTcount: A:0.30, C:0.13, G:0.10, T:0.47
Consensus pattern (177 bp):
ATTCTTTTTTTTTCTTCTTTTGACACAAGAAAATAACGACTAAATTTCAATTCTAATCCATCTAT
TTTTAAAGATTATATAAAGAATGGTCAAATTTTAGTTTCTATCACTATATTTTGCTCAAATTTGA
GACTTAATCTCTATACTTCAATTTTGACATAATTTAGGTACTTGTCC
Found at i:76310121 original size:23 final size:23
Alignment explanation
Indices: 76310095--76310197 Score: 70
Period size: 23 Copynumber: 4.4 Consensus size: 23
76310085 AACTTACTAT
76310095 TTTCAACTCAT-TGGAGCTTATTG
1 TTTCAACTCATAT-GAGCTTATTG
* *
76310118 TTTCAGCTCGTATGAGCTTATTG
1 TTTCAACTCATATGAGCTTATTG
* * **
76310141 -TCCAGCTCGATA-GAGCTTACCG
1 TTTCAACTC-ATATGAGCTTATTG
*
76310163 TTTCAGCTCA-ATAGAGCTTATTG
1 TTTCAACTCATAT-GAGCTTATTG
76310186 TTCATCAACTCA
1 TT--TCAACTCA
76310198 GGAGGAGCTT
Statistics
Matches: 63, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
21 1 0.02
22 16 0.25
23 38 0.60
24 1 0.02
25 7 0.11
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.37
Consensus pattern (23 bp):
TTTCAACTCATATGAGCTTATTG
Found at i:76310149 original size:22 final size:23
Alignment explanation
Indices: 76310108--76310188 Score: 94
Period size: 23 Copynumber: 3.6 Consensus size: 23
76310098 CAACTCATTG
*
76310108 GAGCTTATTGTTTCAGCTCG-TA
1 GAGCTTATTGTTCCAGCTCGATA
76310130 TGAGCTTATTG-TCCAGCTCGATA
1 -GAGCTTATTGTTCCAGCTCGATA
** * *
76310153 GAGCTTACCGTTTCAGCTCAATA
1 GAGCTTATTGTTCCAGCTCGATA
76310176 GAGCTTATTGTTC
1 GAGCTTATTGTTC
76310189 ATCAACTCAG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
22 16 0.33
23 32 0.67
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.37
Consensus pattern (23 bp):
GAGCTTATTGTTCCAGCTCGATA
Found at i:76310883 original size:154 final size:154
Alignment explanation
Indices: 76310691--76310998 Score: 616
Period size: 154 Copynumber: 2.0 Consensus size: 154
76310681 TTTTGAATTT
76310691 ACATGCTTTGCATTTATATATAAATTTTAAACATCCATACGGCACTAACCATATATTACCATATA
1 ACATGCTTTGCATTTATATATAAATTTTAAACATCCATACGGCACTAACCATATATTACCATATA
76310756 CTTCTTTTAAAAATATTAATCATAAAATACTATGCATATTTATTCTAGGTCATTAAATCATGCAC
66 CTTCTTTTAAAAATATTAATCATAAAATACTATGCATATTTATTCTAGGTCATTAAATCATGCAC
76310821 ATTTGACCTTAGTAAATTTAATCA
131 ATTTGACCTTAGTAAATTTAATCA
76310845 ACATGCTTTGCATTTATATATAAATTTTAAACATCCATACGGCACTAACCATATATTACCATATA
1 ACATGCTTTGCATTTATATATAAATTTTAAACATCCATACGGCACTAACCATATATTACCATATA
76310910 CTTCTTTTAAAAATATTAATCATAAAATACTATGCATATTTATTCTAGGTCATTAAATCATGCAC
66 CTTCTTTTAAAAATATTAATCATAAAATACTATGCATATTTATTCTAGGTCATTAAATCATGCAC
76310975 ATTTGACCTTAGTAAATTTAATCA
131 ATTTGACCTTAGTAAATTTAATCA
76310999 TTTTATGAAC
Statistics
Matches: 154, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
154 154 1.00
ACGTcount: A:0.38, C:0.17, G:0.06, T:0.38
Consensus pattern (154 bp):
ACATGCTTTGCATTTATATATAAATTTTAAACATCCATACGGCACTAACCATATATTACCATATA
CTTCTTTTAAAAATATTAATCATAAAATACTATGCATATTTATTCTAGGTCATTAAATCATGCAC
ATTTGACCTTAGTAAATTTAATCA
Found at i:76313278 original size:37 final size:37
Alignment explanation
Indices: 76313223--76313302 Score: 151
Period size: 37 Copynumber: 2.1 Consensus size: 37
76313213 CTAATTACTC
76313223 AAAATCATCAAAAACTCGAATACAAAATAGGTTAATCT
1 AAAA-CATCAAAAACTCGAATACAAAATAGGTTAATCT
76313261 AAAACATCAAAAACTCGAATACAAAATAGGTTAATCT
1 AAAACATCAAAAACTCGAATACAAAATAGGTTAATCT
76313298 AAAAC
1 AAAAC
76313303 CTATCTTTCA
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
37 38 0.90
38 4 0.10
ACGTcount: A:0.55, C:0.16, G:0.07, T:0.21
Consensus pattern (37 bp):
AAAACATCAAAAACTCGAATACAAAATAGGTTAATCT
Found at i:76316999 original size:5 final size:5
Alignment explanation
Indices: 76316989--76317028 Score: 53
Period size: 5 Copynumber: 7.6 Consensus size: 5
76316979 GAAATTTGTG
*
76316989 AAAAT AAAAT AGAAT AAAAAT AAAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT -AAAAT -AAAAT AAAAT AAAAT AAA
76317029 GAACACACAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
5 22 0.69
6 10 0.31
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:76317010 original size:16 final size:15
Alignment explanation
Indices: 76316989--76317028 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
76316979 GAAATTTGTG
*
76316989 AAAATAAAATAGAAT
1 AAAATAAAATAAAAT
76317004 AAAAATAAAAATAAAAT
1 -AAAAT-AAAATAAAAT
76317021 AAAATAAA
1 AAAATAAA
76317029 GAACACACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 3 0.14
16 10 0.45
17 9 0.41
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (15 bp):
AAAATAAAATAAAAT
Found at i:76320288 original size:36 final size:36
Alignment explanation
Indices: 76320247--76320320 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
76320237 AATTAAGAGT
76320247 ATTCAATGAAATTAAATTTCTCTTCAATTCTGGAAC
1 ATTCAATGAAATTAAATTTCTCTTCAATTCTGGAAC
76320283 ATTCAATGAAATTAAATTTCTCTTCAATTCTGGAAC
1 ATTCAATGAAATTAAATTTCTCTTCAATTCTGGAAC
76320319 AT
1 AT
76320321 GTCGTACGTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.39
Consensus pattern (36 bp):
ATTCAATGAAATTAAATTTCTCTTCAATTCTGGAAC
Found at i:76324901 original size:20 final size:20
Alignment explanation
Indices: 76324876--76324914 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
76324866 CCCAAAGAGG
76324876 GAAAAATTAAAAATAAAATT
1 GAAAAATTAAAAATAAAATT
*
76324896 GAAAAATTAAAATTAAAAT
1 GAAAAATTAAAAATAAAAT
76324915 GAGCCAGACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (20 bp):
GAAAAATTAAAAATAAAATT
Found at i:76328793 original size:179 final size:179
Alignment explanation
Indices: 76328434--76328752 Score: 416
Period size: 179 Copynumber: 1.8 Consensus size: 179
76328424 GTATCACTAG
* * * * *
76328434 TTATGCCTTTTTAGGCCTCTTAAATCTGTCAACTGCTTCTACTTCTTTCAATTTTTCTTGTATTG
1 TTATGCCTTTTTAGGCCTCTCAAATATATCAACTGCTTCTACTTCTTTCAATTTTTCTTATATCG
* * * * *
76328499 GGACTTTGCTTCATTTGGCTTGTCTGTCTGTATAATTAGAATGACTAGTGATTACTTTAGACGGT
66 AGACTTTGCTGCATTTGGCTTATCTCTCTGTATAATTAGAATGACTAGTGATTACTTTAGACGGA
* * ** *
76328564 TTGATGATTCATCAGTGATATGATATGTCTTTAATTATTTTAGTCTGTA
131 TGGATGATTCATCAATGATATGATATACCTTTAATTATTTTAATCTGTA
*
76328613 TTATGCCTTTTTAGGCCTCTCAAATATATCAATTGCTTCTAC-T-TTTCAA-TTTTCTTATATCG
1 TTATGCCTTTTTAGGCCTCTCAAATATATCAACTGCTTCTACTTCTTTCAATTTTTCTTATATCG
* * * *
76328675 AGATTTTGCTGCATTTGGCTTATTTCTTTGTAT-A-TAGAATGACTAGTGATTACTTTTGACGGA
66 AGACTTTGCTGCATTTGGCTTATCTCTCTGTATAATTAGAATGACTAGTGATTACTTTAGACGGA
76328738 TGGATGATTCA-CAAT
131 TGGATGATTCATCAAT
76328753 TATTTATATT
Statistics
Matches: 123, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
173 3 0.02
174 37 0.30
175 1 0.01
176 37 0.30
177 6 0.05
178 1 0.01
179 38 0.31
ACGTcount: A:0.23, C:0.15, G:0.16, T:0.46
Consensus pattern (179 bp):
TTATGCCTTTTTAGGCCTCTCAAATATATCAACTGCTTCTACTTCTTTCAATTTTTCTTATATCG
AGACTTTGCTGCATTTGGCTTATCTCTCTGTATAATTAGAATGACTAGTGATTACTTTAGACGGA
TGGATGATTCATCAATGATATGATATACCTTTAATTATTTTAATCTGTA
Found at i:76361585 original size:48 final size:48
Alignment explanation
Indices: 76361519--76361746 Score: 293
Period size: 48 Copynumber: 4.8 Consensus size: 48
76361509 TGATATGTGT
*
76361519 GCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACATTATGATA
1 GCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACATTATGAGA
* *
76361567 GCCAGTGTAAGACCATGTCTAGGACATGACATCGGCCACATTATGAAA
1 GCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACATTATGAGA
* *
76361615 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATGAGA
1 GCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACATTATGAGA
* * *
76361663 GCCAATGTAAGACCATGT-TTGGAACATGGCAT---CAACATTGAGATGAGA
1 GCCAGTGTAAGACCATGTCTAGG-ACATGGCATCGGCCACATT---ATGAGA
* * *
76361711 GCTAGTGTAAGACCATGTCTGGGGCATGGCATCGGC
1 GCCAGTGTAAGACCATGTCTAGGACATGGCATCGGC
76361747 AATTTACCCT
Statistics
Matches: 159, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
45 6 0.04
47 3 0.02
48 146 0.92
49 3 0.02
51 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.22
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACATTATGAGA
Found at i:76376153 original size:21 final size:21
Alignment explanation
Indices: 76376113--76376153 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
76376103 GCTTATTATA
*
76376113 TTTTAATTAATTATATTTTAG
1 TTTTAATTAATTATAATTTAG
76376134 TTTTAATTAATCT-TAATTTA
1 TTTTAATTAAT-TATAATTTA
76376154 CTTTATTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (21 bp):
TTTTAATTAATTATAATTTAG
Found at i:76377030 original size:14 final size:14
Alignment explanation
Indices: 76377013--76377040 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
76377003 GTAAAACAAT
76377013 GAAAATATTTTACA
1 GAAAATATTTTACA
76377027 GAAAATATTTTACA
1 GAAAATATTTTACA
76377041 TGCAAACAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.36
Consensus pattern (14 bp):
GAAAATATTTTACA
Done.