Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 23 of 322
Found at i:6751248 original size:18 final size:18
Alignment explanation
Indices: 6751221--6751311 Score: 80
Period size: 17 Copynumber: 5.2 Consensus size: 18
6751211 CGTTTTTTAT
*
6751221 AAATCTTCGTGCTTTCAA
1 AAATCCTCGTGCTTTCAA
* *
6751239 TAATCCTCGTGCTTTTAA
1 AAATCCTCGTGCTTTCAA
* *
6751257 AAATTCTCATG-TTTCAA
1 AAATCCTCGTGCTTTCAA
* *
6751274 AAATCTTCGTGTTTTC-A
1 AAATCCTCGTGCTTTCAA
* *
6751291 AAATTCTAGTG-TTTCAA
1 AAATCCTCGTGCTTTCAA
6751308 AAAT
1 AAAT
6751312 TTTCTTGTTT
Statistics
Matches: 58, Mismatches: 13, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
16 4 0.07
17 27 0.47
18 27 0.47
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.42
Consensus pattern (18 bp):
AAATCCTCGTGCTTTCAA
Found at i:6751277 original size:17 final size:18
Alignment explanation
Indices: 6751251--6751328 Score: 69
Period size: 17 Copynumber: 4.6 Consensus size: 18
6751241 ATCCTCGTGC
6751251 TTTT-AAAAATTCTCATG
1 TTTTCAAAAATTCTCATG
*
6751268 -TTTCAAAAA-TCTTCGTG
1 TTTTCAAAAATTC-TCATG
6751285 TTTTC-AAAATTCT-A-G
1 TTTTCAAAAATTCTCATG
* *
6751300 TGTTTCAAAAATTTTCTTG
1 T-TTTCAAAAATTCTCATG
6751319 TTTTCAAAAA
1 TTTTCAAAAA
6751329 AAAATTTCGT
Statistics
Matches: 49, Mismatches: 4, Indels: 15
0.72 0.06 0.22
Matches are distributed among these distances:
15 2 0.04
16 9 0.18
17 21 0.43
18 15 0.31
19 2 0.04
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.46
Consensus pattern (18 bp):
TTTTCAAAAATTCTCATG
Found at i:6751304 original size:34 final size:34
Alignment explanation
Indices: 6751233--6751327 Score: 120
Period size: 34 Copynumber: 2.8 Consensus size: 34
6751223 ATCTTCGTGC
* * *
6751233 TTTCAATAATCCTCGTGCTTTTAAAAATTCTCATG
1 TTTCAAAAATCTTCGTG-TTTTCAAAATTCTCATG
6751268 TTTCAAAAATCTTCGTGTTTTCAAAATTCT-AGTG
1 TTTCAAAAATCTTCGTGTTTTCAAAATTCTCA-TG
* *
6751302 TTTCAAAAATTTTCTTGTTTTCAAAA
1 TTTCAAAAATCTTCGTGTTTTCAAAA
6751328 AAAAATTTCG
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
33 1 0.02
34 38 0.70
35 15 0.28
ACGTcount: A:0.31, C:0.16, G:0.08, T:0.45
Consensus pattern (34 bp):
TTTCAAAAATCTTCGTGTTTTCAAAATTCTCATG
Found at i:6751307 original size:16 final size:16
Alignment explanation
Indices: 6751256--6751309 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
6751246 CGTGCTTTTA
6751256 AAAATTCTCA-TGTTTC
1 AAAATTCT-AGTGTTTC
* *
6751272 AAAAATCTTCGTGTTTTC
1 AAAATTC-TAGTG-TTTC
6751290 AAAATTCTAGTGTTTC
1 AAAATTCTAGTGTTTC
6751306 AAAA
1 AAAA
6751310 ATTTTCTTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
16 14 0.45
17 7 0.23
18 10 0.32
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (16 bp):
AAAATTCTAGTGTTTC
Found at i:6751334 original size:22 final size:21
Alignment explanation
Indices: 6751306--6751388 Score: 95
Period size: 21 Copynumber: 4.0 Consensus size: 21
6751296 CTAGTGTTTC
*
6751306 AAAAATTTTCTTGTTTTCAAAA
1 AAAAATTTTCGTGTTTT-AAAA
6751328 AAAAA-TTTCGTGTTTTAAAA
1 AAAAATTTTCGTGTTTTAAAA
6751348 AAAAATATTTCCGTGTTTT----
1 AAAAAT-TTT-CGTGTTTTAAAA
6751367 AAAAATTTTCGTGTTTTAAAA
1 AAAAATTTTCGTGTTTTAAAA
6751388 A
1 A
6751389 TTCTCGTATT
Statistics
Matches: 53, Mismatches: 1, Indels: 15
0.77 0.01 0.22
Matches are distributed among these distances:
17 8 0.15
18 3 0.06
19 6 0.11
20 9 0.17
21 11 0.21
22 8 0.15
23 8 0.15
ACGTcount: A:0.41, C:0.07, G:0.08, T:0.43
Consensus pattern (21 bp):
AAAAATTTTCGTGTTTTAAAA
Found at i:6751349 original size:17 final size:17
Alignment explanation
Indices: 6751166--6751582 Score: 101
Period size: 18 Copynumber: 23.4 Consensus size: 17
6751156 CGTGTTTGAA
*
6751166 AAAAAATTTTCGCG-TTT
1 AAAAAA-TTTCGTGTTTT
6751183 AAAAAATTTC-TCGTATTT
1 AAAAAATTTCGT-GT-TTT
*
6751201 CAAAAATTGTCGT-TTTT
1 AAAAAATT-TCGTGTTTT
* * *
6751218 TATAAATCTTCGTGCTTT
1 AAAAAAT-TTCGTGTTTT
* * *
6751236 CAATAATCCTCGTGCTTTT
1 AAAAAAT-TTCGTG-TTTT
*
6751255 -AAAAATTCTCATG-TTT
1 AAAAAATT-TCGTGTTTT
*
6751271 CAAAAATCTTCGTGTTTT
1 AAAAAAT-TTCGTGTTTT
* * *
6751289 -CAAAATTCTAGTGTTTC
1 AAAAAATT-TCGTGTTTT
* *
6751306 AAAAATTTTCTTGTTTT
1 AAAAAATTTCGTGTTTT
6751323 CAAAAAAAAATTTCGTGTTTT
1 ----AAAAAATTTCGTGTTTT
6751344 AAAAAAAAATATTTCCGTGTTTT
1 ----AAAAA-ATTT-CGTGTTTT
*
6751367 AAAAATTTTCGTGTTTT
1 AAAAAATTTCGTGTTTT
*
6751384 -AAAAATTCTCGT-ATTT
1 AAAAAATT-TCGTGTTTT
** *
6751400 --AAAATTTTTTTTTTT
1 AAAAAATTTCGTGTTTT
*
6751415 AAGAAAAAATTT--TGTTTCA
1 ---AAAAAATTTCGTGTTT-T
* *
6751434 AAAAAATGTCTTGTTTT
1 AAAAAATTTCGTGTTTT
* *
6751451 -AAAAATTCCCGTGTTTCAAA
1 AAAAAATT-TCGTGTTT---T
*
6751471 AAAAAATGTCGTGTTTT
1 AAAAAATTTCGTGTTTT
* *
6751488 AAGAAAATTTTGTTTTTTT
1 AA-AAAATTTCG-TGTTTT
*
6751507 CCAAAAATTTTCGTGTTTCT
1 --AAAAAATTTCGTGTTT-T
*
6751527 AAAATA-TTCGTG-TTT
1 AAAAAATTTCGTGTTTT
*
6751542 -ACAAATTCTCGTGTTTT
1 AAAAAATT-TCGTGTTTT
* *
6751559 CAAAAATTCTCGTATTTT
1 AAAAAATT-TCGTGTTTT
6751577 AAAAAA
1 AAAAAA
6751583 AAAACTTTCG
Statistics
Matches: 301, Mismatches: 55, Indels: 87
0.68 0.12 0.20
Matches are distributed among these distances:
14 5 0.02
15 11 0.04
16 39 0.13
17 75 0.25
18 86 0.29
19 19 0.06
20 23 0.08
21 31 0.10
22 4 0.01
23 8 0.03
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.45
Consensus pattern (17 bp):
AAAAAATTTCGTGTTTT
Found at i:6751350 original size:23 final size:23
Alignment explanation
Indices: 6751306--6751371 Score: 82
Period size: 22 Copynumber: 3.0 Consensus size: 23
6751296 CTAGTGTTTC
* * *
6751306 AAAAATTTTCTTGTTTT-CAAAA
1 AAAAATTTCCGTGTTTTAAAAAA
6751328 AAAAATTT-CGTGTTTTAAAAAA
1 AAAAATTTCCGTGTTTTAAAAAA
*
6751350 AAATATTTCCGTGTTTTAAAAA
1 AAAAATTTCCGTGTTTTAAAAA
6751372 TTTTCGTGTT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
21 7 0.18
22 19 0.49
23 13 0.33
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.41
Consensus pattern (23 bp):
AAAAATTTCCGTGTTTTAAAAAA
Found at i:6751400 original size:16 final size:17
Alignment explanation
Indices: 6751359--6751403 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 17
6751349 AAAATATTTC
* *
6751359 CGTGTTTTAAAAATTTT
1 CGTGATTTAAAAATTCT
*
6751376 CGTGTTTTAAAAATTCT
1 CGTGATTTAAAAATTCT
6751393 CGT-ATTTAAAA
1 CGTGATTTAAAA
6751404 TTTTTTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
16 7 0.27
17 19 0.73
ACGTcount: A:0.33, C:0.09, G:0.11, T:0.47
Consensus pattern (17 bp):
CGTGATTTAAAAATTCT
Found at i:6759997 original size:123 final size:123
Alignment explanation
Indices: 6759771--6760013 Score: 337
Period size: 122 Copynumber: 2.0 Consensus size: 123
6759761 AAGAAAATCA
* *
6759771 ACTCATATCACGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGC
1 ACTCATATCACGAGAGGTGAGTTAAGCCTTTTAATTTATGTTTTTCAAAAATCAACTCATATTGC
*
6759836 GAGAAGTGAGTTGAGCCTAGGGGCACGCCAAGGTATTTTTAGTTTATGTTTTAAATTG
66 GAGAAGTGAGTTGAGCCTAGGGACACGCCAAGGTATTTTTAGTTTATGTTTTAAATTG
** *
6759894 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTATGTTTTTC-AAAATCAATTCATATTGC
1 ACTCATATCACGAGAGGTGAGTTAAGCCTTTTAATTTATGTTTTTCAAAAATCAACTCATATTGC
* * ** * * *
6759958 TAGAGGTGAGTTGAGCCTCA-GGACACGCTGAGGTAATTTTAATTTCTGTTGTTAAA
66 GAGAAGTGAGTTGAGCCT-AGGGACACGCCAAGGTATTTTTAGTTTATGTT-TTAAA
6760014 AAAATCAACT
Statistics
Matches: 105, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
122 57 0.54
123 48 0.46
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (123 bp):
ACTCATATCACGAGAGGTGAGTTAAGCCTTTTAATTTATGTTTTTCAAAAATCAACTCATATTGC
GAGAAGTGAGTTGAGCCTAGGGACACGCCAAGGTATTTTTAGTTTATGTTTTAAATTG
Found at i:6760133 original size:72 final size:72
Alignment explanation
Indices: 6759926--6761162 Score: 2154
Period size: 72 Copynumber: 17.1 Consensus size: 72
6759916 TAAGCCTTTT
* * * ** * *
6759926 AATTTATGTTTTTCAAAA-TCAATTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
*
6759990 GTAATTTT
65 GTAATTTC
* * * *
6759998 AATTTCTGTTGTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGA
1 AATTTCTGTT-TT-CAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
6760063 GGTAATTTC
64 GGTAATTTC
* * *
6760072 AATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
6760137 TATTTTC
66 TAATTTC
* *
6760144 AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
*
6760209 GTATTTTC
65 GTAATTTC
6760217 AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
6760282 GTAATTTC
65 GTAATTTC
6760290 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
6760355 TAATTTC
66 TAATTTC
6760362 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
6760427 TAATTTC
66 TAATTTC
6760434 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
6760499 TAATTTC
66 TAATTTC
6760506 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
6760571 TAATTTC
66 TAATTTC
6760578 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
6760643 TAATTTC
66 TAATTTC
* *
6760650 AATTTATGTTTTCAAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
6760715 TAATTTC
66 TAATTTC
6760722 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
6760787 TAATTTC
66 TAATTTC
6760794 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
6760859 TAATTTC
66 TAATTTC
6760866 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
6760931 TAATTTC
66 TAATTTC
6760938 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
6761003 TAATTTC
66 TAATTTC
*
6761010 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
6761075 TATTTTC
66 TAATTTC
* * *
6761082 AATTTCTGCTTTTCAAAACTT-AACTCATATTGCGAGAGATGAGTTGAGCCTCAAGGCACGCTGA
1 AATTTCTG-TTTTCAAAA-TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
*
6761146 GGTATTTTC
64 GGTAATTTC
6761155 AATTTCTG
1 AATTTCTG
6761163 CTTTACTAAT
Statistics
Matches: 1134, Mismatches: 25, Indels: 11
0.97 0.02 0.01
Matches are distributed among these distances:
71 2 0.00
72 859 0.76
73 212 0.19
74 61 0.05
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33
Consensus pattern (72 bp):
AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
TAATTTC
Found at i:6761268 original size:86 final size:87
Alignment explanation
Indices: 6761077--6761268 Score: 214
Period size: 86 Copynumber: 2.2 Consensus size: 87
6761067 CATTGAGGTA
* * * *
6761077 TTTTCAATTTCTGCTTTTCAAAACTTAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGGCACG
1 TTTTTAATTTCTGTTTTTCAAAACTCAACTCATATTGCAAGAGATGAGTTGAGCCTCAAGGCACG
*
6761142 CTGAGGTATTTTCAATTTCTGC
66 CTGAGGTATTTTCAAATTCTGC
* * * *
6761164 TTTACTAA-TTCTACTTTTTC-AAA-TCAACTCATATTGCAAGAGGTGAGTTGAGTCTC-AGGCC
1 TTT-TTAATTTCT-GTTTTTCAAAACTCAACTCATATTGCAAGAGATGAGTTGAGCCTCAAGG--
*
6761225 ACACGCTGAGGTCTTTTCAAATTCTG-
62 -CACGCTGAGGTATTTTCAAATTCTGC
6761251 TTTTTAATTTCTGTTTTT
1 TTTTTAATTTCTGTTTTT
6761269 TANNNNNNNN
Statistics
Matches: 87, Mismatches: 12, Indels: 13
0.78 0.11 0.12
Matches are distributed among these distances:
85 3 0.03
86 37 0.43
87 17 0.20
88 30 0.34
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Consensus pattern (87 bp):
TTTTTAATTTCTGTTTTTCAAAACTCAACTCATATTGCAAGAGATGAGTTGAGCCTCAAGGCACG
CTGAGGTATTTTCAAATTCTGC
Found at i:6765166 original size:21 final size:20
Alignment explanation
Indices: 6765135--6765174 Score: 55
Period size: 19 Copynumber: 1.9 Consensus size: 20
6765125 AGAAACCCAA
6765135 CCATATCCAACCATATACACCC
1 CCATATCCAACC-T-TACACCC
6765157 CCATA-CCAACCTTACACC
1 CCATATCCAACCTTACACC
6765175 GTGTGGGGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.35, C:0.47, G:0.00, T:0.17
Consensus pattern (20 bp):
CCATATCCAACCTTACACCC
Found at i:6765273 original size:27 final size:28
Alignment explanation
Indices: 6765236--6765375 Score: 157
Period size: 27 Copynumber: 5.2 Consensus size: 28
6765226 AGCATGGCTG
* *
6765236 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
6765262 CCAGATACAGATA-ATCGTGGTAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
*
6765290 CCAGA-ACAAATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
6765317 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* * *
6765344 CCAGAT-CAGATATTTGCGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
6765371 CCAGA
1 CCAGA
6765376 ACGCTTCCTC
Statistics
Matches: 101, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.05
27 80 0.79
28 16 0.16
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.18
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:6767032 original size:26 final size:25
Alignment explanation
Indices: 6766994--6767077 Score: 123
Period size: 26 Copynumber: 3.2 Consensus size: 25
6766984 CATGAAATTC
*
6766994 TTATCATGAAACATTTACCTAACCCA
1 TTATCATG-AACATTTACCTAACCTA
*
6767020 TTATCATAGAACATTTGCCTAACCTA
1 TTATCAT-GAACATTTACCTAACCTA
6767046 TTATCATGGAACATTTACCTAACCTA
1 TTATCAT-GAACATTTACCTAACCTA
6767072 TTATCA
1 TTATCA
6767078 ATTTGTATCA
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
26 52 0.98
27 1 0.02
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.35
Consensus pattern (25 bp):
TTATCATGAACATTTACCTAACCTA
Found at i:6768627 original size:10 final size:10
Alignment explanation
Indices: 6768614--6768641 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
6768604 ATAAATAATG
6768614 AAAGATAAGT
1 AAAGATAAGT
6768624 AAAGATAAGT
1 AAAGATAAGT
6768634 AAAGATAA
1 AAAGATAA
6768642 ATGAAAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.18, T:0.18
Consensus pattern (10 bp):
AAAGATAAGT
Found at i:6768645 original size:31 final size:30
Alignment explanation
Indices: 6768593--6768651 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
6768583 TGAAATTCTA
6768593 AAAGATAAATAATAAATAATGAAAGATAAGT
1 AAAGATAAATAATAAATAATGAAA-ATAAGT
* *
6768624 AAAGATAAGTAA-AGATAAATGAAAATAA
1 AAAGATAAATAATAAAT-AATGAAAATAA
6768652 ATCCTAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 7 0.28
31 18 0.72
ACGTcount: A:0.66, C:0.00, G:0.14, T:0.20
Consensus pattern (30 bp):
AAAGATAAATAATAAATAATGAAAATAAGT
Found at i:6768651 original size:20 final size:19
Alignment explanation
Indices: 6768593--6768651 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 19
6768583 TGAAATTCTA
6768593 AAAGATAAATAATAAATAATG
1 AAAGATAAAT-A-AAATAATG
*
6768614 AAAGATAAGTAAAGATAA-G
1 AAAGATAAATAAA-ATAATG
6768633 TAAAGATAAATGAAAATAA
1 -AAAGATAAAT-AAAATAA
6768652 ATCCTAAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
19 3 0.09
20 18 0.55
21 12 0.36
ACGTcount: A:0.66, C:0.00, G:0.14, T:0.20
Consensus pattern (19 bp):
AAAGATAAATAAAATAATG
Found at i:6770207 original size:15 final size:16
Alignment explanation
Indices: 6770163--6770209 Score: 51
Period size: 18 Copynumber: 2.8 Consensus size: 16
6770153 TTTTAATTAA
6770163 ATTTTTATTTGATAAATT
1 ATTTTTATTT-A-AAATT
6770181 ATTTTTGAATTTAAAATT
1 ATTTTT--ATTTAAAATT
6770199 -TTTTTATTTAA
1 ATTTTTATTTAA
6770210 TTTTAGAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
15 6 0.22
17 5 0.19
18 11 0.41
19 1 0.04
20 4 0.15
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (16 bp):
ATTTTTATTTAAAATT
Found at i:6776953 original size:15 final size:14
Alignment explanation
Indices: 6776933--6776960 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
6776923 ATCTCCCCCA
6776933 TTTTTTTAGTTTTC
1 TTTTTTTAGTTTTC
6776947 TTTTTTTAGTTTTC
1 TTTTTTTAGTTTTC
6776961 AACACTAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.07, G:0.07, T:0.79
Consensus pattern (14 bp):
TTTTTTTAGTTTTC
Found at i:6784989 original size:25 final size:25
Alignment explanation
Indices: 6784959--6785008 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
6784949 AGTTATGGAG
6784959 CATTACCGGAGTTACCGATTTATTT
1 CATTACCGGAGTTACCGATTTATTT
6784984 CATTACCGGAGTTACCGATTTATTT
1 CATTACCGGAGTTACCGATTTATTT
6785009 ATCAGATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.40
Consensus pattern (25 bp):
CATTACCGGAGTTACCGATTTATTT
Found at i:6791568 original size:14 final size:15
Alignment explanation
Indices: 6791549--6791581 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
6791539 TCAAAAGCAA
6791549 AAAAAGAAAG-AAAG
1 AAAAAGAAAGAAAAG
6791563 AAAAAGAAAGAAAAG
1 AAAAAGAAAGAAAAG
6791578 AAAA
1 AAAA
6791582 TGGAGAGGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAGAAAAG
Found at i:6793295 original size:74 final size:73
Alignment explanation
Indices: 6793102--6793572 Score: 407
Period size: 74 Copynumber: 6.2 Consensus size: 73
6793092 TTTTGGTACT
* *
6793102 CTGAGGTATCTTTAA-TTCATG-T-TTTCAAAAATCAACTCATATTGCGAGAGGGGAGTTGGGCC
1 CTGAGGTAT-TTTAATTTC-TGTTGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
6793164 TCAGGGCACACG
64 TCA-GG-ACACG
* * * ** **
6793176 CTGAGGTATTTTCAGTT-T-ATGTTTCAAAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTC
1 CTGAGGTATTTTAATTTCTGTTGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
*
6793239 AGGTCACG
66 AGGACACG
*
6793247 CTGAGGTATTCTTAATTTCTGTTGTTTCAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCT
1 CTGAGGTATT-TTAATTTCTGTTGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
6793312 CAGGACACG
65 CAGGACACG
*
6793321 CTGAGGTAATTTCAATTTCTGTTTTTTCATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAG
1 CTGAGGT-ATTTTAATTTCTG-----T--TG-TTTCAAAAATCAACTCATATTGCGAGAGGTGAG
* *
6793386 TTGAGCCTCGGGGCACG
57 TTGAGCCTCAGGACACG
* **
6793403 CCGAGGTATTTTCAATTTCTACT-TTTCAAAAAAATCAACTCATATTGCGAGATTGCGAGAGGTG
1 CTGAGGTATTTT-AATTTCTGTTGTTTC--AAAAATCAACTC--A-T-----ATTGCGAGAGGTG
* *
6793467 AGTTGAGCCTCGGGGCACG
55 AGTTGAGCCTCAGGACACG
* * * * *
6793486 CCGAGGTACTTTCAATTTATGCT-TTTCAAAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGC
1 CTGAGGTA-TTTTAATTTCTGTTGTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* *
6793550 CACAGGACACA
63 CTCAGGACACG
6793561 CTGAGGTATTTT
1 CTGAGGTATTTT
6793573 CAAATTATGC
Statistics
Matches: 335, Mismatches: 35, Indels: 54
0.79 0.08 0.13
Matches are distributed among these distances:
71 14 0.04
72 9 0.03
73 46 0.14
74 76 0.23
75 51 0.15
77 1 0.00
78 1 0.00
79 1 0.00
80 1 0.00
81 7 0.02
82 60 0.18
83 65 0.19
84 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (73 bp):
CTGAGGTATTTTAATTTCTGTTGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
AGGACACG
Found at i:6793409 original size:82 final size:78
Alignment explanation
Indices: 6793124--6793593 Score: 346
Period size: 83 Copynumber: 6.1 Consensus size: 78
6793114 TAATTCATGT
* * * * *
6793124 TTTCAAAAATCAACTCATATTGCGAGAGGGGAGTTGGGCCTCAGGGCACACGCTGAGGTATTTTC
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGG-GCACGCCGAGGTAATTTC
* *
6793189 AGTTTATG-------
64 AATTTCTGCTTTTCA
** ** * * * *
6793197 TTTCAAAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGT-ATTCTTA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTAATT-TCA
*
6793261 ATTTCTG---TT-G
65 ATTTCTGCTTTTCA
* * * *
6793271 TTTCAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTAATTTCAA
*
6793336 TTTCTGTTTTTTCA
66 TTTCTG-CTTTTCA
*
6793350 TGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTT
1 ---TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTAATTT
*
6793415 CAATTTCTACTTTTCA
63 CAATTTCTGCTTTTCA
*
6793431 ---AAAAAATCAACTCATATTGCGAGATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGT
1 TTTCAAAAATCAACTC--A-T-----ATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGT
* *
6793493 ACTTTCAATTTATGCTTTTCA
58 AATTTCAATTTCTGCTTTTCA
* * * * * * * *
6793514 ---AAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCACAGGACACACTGAGGTATTTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTAATTTCAA
* *
6793576 ATTATGCTTTTCAA
66 TTTCTGCTTTTC-A
6793590 TTTC
1 TTTC
6793594 TGTTCTTTCA
Statistics
Matches: 332, Mismatches: 40, Indels: 44
0.80 0.10 0.11
Matches are distributed among these distances:
70 2 0.01
71 18 0.05
72 2 0.01
73 36 0.11
74 60 0.18
75 67 0.20
76 1 0.00
77 1 0.00
78 3 0.01
80 1 0.00
81 7 0.02
82 65 0.20
83 69 0.21
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (78 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTAATTTCAA
TTTCTGCTTTTCA
Found at i:6793928 original size:54 final size:56
Alignment explanation
Indices: 6793836--6793947 Score: 165
Period size: 54 Copynumber: 2.0 Consensus size: 56
6793826 TCAATTTCTG
** *
6793836 TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCC
1 TTTTCAATTTATGTTTTTC-AAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCC
*
6793893 TTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCC
1 TTTTCAATTTATGTTTTTCAAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCC
6793947 T
1 T
6793948 CAGGGCATGC
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
54 34 0.67
56 13 0.25
57 4 0.08
ACGTcount: A:0.31, C:0.13, G:0.16, T:0.39
Consensus pattern (56 bp):
TTTTCAATTTATGTTTTTCAAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCC
Found at i:6793977 original size:142 final size:142
Alignment explanation
Indices: 6793619--6794091 Score: 660
Period size: 142 Copynumber: 3.3 Consensus size: 142
6793609 TATTTCTCAA
** * * * **
6793619 AAAAATCAACTCATATTGTGAGAGGTGAGTTAAGCCTCAGGTCACATGCCGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAGG--ACATGCTGAGGTATTTTCAATT
* * *
6793684 TCTGTTTCGCAAATTT-TGTATTTTTCAAAAAGACCAACTCATATTGCGAGAGGTGAGTTGAGCC
64 TCTGTTT-TC-AATTTATG--TTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
6793748 TTTTAATTTCTATTTTTC
125 TTTTAATTTCTATTTTTC
* *
6793766 AAAAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATATTCAAT
1 ---AAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAGGACATGCTGAGGTATTTTCAAT
*
6793831 TTCTGTTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTT
63 TTCTGTTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTT
*
6793896 TAATTTCTGTTTTTC
128 TAATTTCTATTTTTC
*
6793911 AAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAGGGCATGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAGGACATGCTGAGGTATTTTCAATTTC
* *
6793976 TGTTTTCAATTTATGTTTTTCAAAAAAATTAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAA
66 TGTTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAA
*
6794041 TTTCTATTTTTAAA
131 TTTCTATTTTT--C
* *
6794055 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 AAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCT
6794092 TTTGATTTCT
Statistics
Matches: 296, Mismatches: 24, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
142 134 0.45
144 35 0.12
145 58 0.20
146 5 0.02
147 3 0.01
148 24 0.08
150 37 0.12
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.36
Consensus pattern (142 bp):
AAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAGGACATGCTGAGGTATTTTCAATTTC
TGTTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAA
TTTCTATTTTTC
Found at i:6793998 original size:14 final size:13
Alignment explanation
Indices: 6793965--6793994 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
6793955 TGCTGAGGTA
*
6793965 TTTTCAATTTCTG
1 TTTTCAATTTATG
6793978 TTTTCAATTTATG
1 TTTTCAATTTATG
6793991 TTTT
1 TTTT
6793995 TCAAAAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.10, G:0.07, T:0.67
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:6794141 original size:58 final size:57
Alignment explanation
Indices: 6793978--6794147 Score: 245
Period size: 56 Copynumber: 3.0 Consensus size: 57
6793968 TCAATTTCTG
* * *
6793978 TTTTCAATTTATGTTTTTC-AAAAAAATTAACTCATATTGCGAGAGGTGAGTTAAGCC
1 TTTT-AATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
*
6794035 TTTTAATTTCTATTTTT-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTAATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* * *
6794091 TTTTGATTTCTGTTTTTCAAAAAAAAAGCAACTCATATGGCGAGAGGTGAGTTGAGC
1 TTTTAATTTCTGTTTTTC-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
6794148 TTTGGCTCAC
Statistics
Matches: 102, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
56 62 0.61
57 4 0.04
58 36 0.35
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.36
Consensus pattern (57 bp):
TTTTAATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
Found at i:6794357 original size:44 final size:44
Alignment explanation
Indices: 6794294--6794403 Score: 202
Period size: 44 Copynumber: 2.5 Consensus size: 44
6794284 CAGATTTGGA
*
6794294 CTCCCTGAAGTTGCAGTGGAGCATGTTAAAGTCGCGAGTCTTGT
1 CTCCCTGAAGTTGCAGTGGAGCATGTTAAAGTCACGAGTCTTGT
6794338 CTCCCTGAAGTTGCAGTGGAGCATGTTAAAGTCACGAGTCTTGT
1 CTCCCTGAAGTTGCAGTGGAGCATGTTAAAGTCACGAGTCTTGT
*
6794382 CTCCCTGAAGTTGCAGTAGAGC
1 CTCCCTGAAGTTGCAGTGGAGC
6794404 TGATCGAGGA
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
44 64 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (44 bp):
CTCCCTGAAGTTGCAGTGGAGCATGTTAAAGTCACGAGTCTTGT
Found at i:6796476 original size:24 final size:24
Alignment explanation
Indices: 6796449--6796499 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
6796439 TTTTTTTAAA
*
6796449 ATACCATAAT-ATTTATATATTTTT
1 ATACCAT-ATCATATATATATTTTT
*
6796473 ATACCATCTCATATATATATTTTT
1 ATACCATATCATATATATATTTTT
6796497 ATA
1 ATA
6796500 TTATTCTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 1 0.04
24 23 0.96
ACGTcount: A:0.37, C:0.12, G:0.00, T:0.51
Consensus pattern (24 bp):
ATACCATATCATATATATATTTTT
Found at i:6801033 original size:17 final size:17
Alignment explanation
Indices: 6801010--6801051 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
6801000 GTAATACCTA
6801010 AAATATAA-T-AATAATG
1 AAATATAAGTAAATAA-G
6801026 AAAGTATAAGTAAATAAG
1 AAA-TATAAGTAAATAAG
6801044 AAATATAA
1 AAATATAA
6801052 ATAGATGAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 3 0.13
17 10 0.43
18 5 0.22
19 5 0.22
ACGTcount: A:0.64, C:0.00, G:0.10, T:0.26
Consensus pattern (17 bp):
AAATATAAGTAAATAAG
Found at i:6801233 original size:27 final size:27
Alignment explanation
Indices: 6801106--6801302 Score: 112
Period size: 27 Copynumber: 7.0 Consensus size: 27
6801096 TAGGCATAAT
* * * *
6801106 ACAATAGTAATAGTAATTACAAAAATG
1 ACAATAGTAATAATAATAATAAAAATA
* *
6801133 ATAATAGTAATAA-AATAAGTTAATAATA
1 ACAATAGTAATAATAATAA--TAAAAATA
* * *
6801161 ATAATAACCGTAGTAGTAATAATAAAAAT-
1 ACAAT-A--GTAATAATAATAATAAAAATA
* * *
6801190 ATAATAGTAATAATAATACTAAATATA
1 ACAATAGTAATAATAATAATAAAAATA
*
6801217 ACAATAGTAATATTAATAATAAAAATAA
1 ACAATAGTAATAATAATAATAAAAAT-A
** * * *
6801245 TAGCAATAAAAATAAAAATAATAACAATG
1 -A-CAATAGTAATAATAATAATAAAAATA
*
6801274 ACAATAAAG-AATAATAATAATAATAATA
1 ACAAT--AGTAATAATAATAATAAAAATA
6801302 A
1 A
6801303 TGATAATGAT
Statistics
Matches: 131, Mismatches: 27, Indels: 23
0.72 0.15 0.13
Matches are distributed among these distances:
26 20 0.15
27 37 0.28
28 30 0.23
29 8 0.06
30 26 0.20
31 5 0.04
32 5 0.04
ACGTcount: A:0.61, C:0.05, G:0.07, T:0.27
Consensus pattern (27 bp):
ACAATAGTAATAATAATAATAAAAATA
Found at i:6801516 original size:22 final size:22
Alignment explanation
Indices: 6801488--6801549 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
6801478 GTAATAAATA
6801488 AATAATAATAGTAAATAATAAG
1 AATAATAATAGTAAATAATAAG
*
6801510 AATAATAATAG-AAATAAAAAAG
1 AATAATAATAGTAAAT-AATAAG
* *
6801532 ATTAATAATAAT-AATAAT
1 AATAATAATAGTAAATAAT
6801550 GATGATAATA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
21 6 0.18
22 28 0.82
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.27
Consensus pattern (22 bp):
AATAATAATAGTAAATAATAAG
Found at i:6801605 original size:47 final size:45
Alignment explanation
Indices: 6801554--6801652 Score: 110
Period size: 46 Copynumber: 2.1 Consensus size: 45
6801544 AATAATGATG
* *
6801554 ATAATAGTAATAGAAAATAAAAAGATA-GTAGTAATATAGAAATAGTA
1 ATAATAGTAATA-AAAACAAAAAGA-ACGTAATAATA-AGAAATAGTA
* * *
6801601 ATAATAGTCATAAAAACAAAAATAACGGTAATAATAATAAATAGTA
1 ATAATAGTAATAAAAACAAAAAGAAC-GTAATAATAAGAAATAGTA
6801647 ATAATA
1 ATAATA
6801653 ACAATAATAT
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
45 1 0.02
46 25 0.56
47 19 0.42
ACGTcount: A:0.61, C:0.03, G:0.11, T:0.25
Consensus pattern (45 bp):
ATAATAGTAATAAAAACAAAAAGAACGTAATAATAAGAAATAGTA
Found at i:6801716 original size:3 final size:3
Alignment explanation
Indices: 6801133--6801697 Score: 130
Period size: 3 Copynumber: 188.0 Consensus size: 3
6801123 TACAAAAATG
* ** * * *
6801133 ATA ATA GTA ATA A-A ATA AGTTA ATA ATA ATA ATA ACC GTA GTA GTA
1 ATA ATA ATA ATA ATA ATA A--TA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
6801179 ATA ATA AAA AT- ATA ATA GTA ATA ATA ATA CTA A-A TATA ACA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA
* * * ** * * *
6801223 GTA ATA TTA ATA ATA AAA ATA ATA GCA ATA AAA ATA AAA ATA ATA ACA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
6801271 ATG ACA ATAA AGA ATA ATA ATA ATA ATA ATA ATG ATA ATG ATGA A-A
1 ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA
* ** * * * *
6801317 AT- ATGA GTA ACC ATA AT- CTCA A-A TTT ATT ATAA ATA ATAA ATA ATA
1 ATA AT-A ATA ATA ATA ATA AT-A ATA ATA ATA AT-A ATA AT-A ATA ATA
* * * * * ** *
6801363 ATA ATA ATG ATA GTC TTA ATA ATG ATA ACG ACA ATA A-A A-A AGTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA
** * * *
6801407 GGA ATA ATA ATG ATA ATA TATA A-A ATA ATA ATA ATT GTA A-A A-A
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * ** ** *
6801450 GATA ATA AGA ATA GTA GCA ATA ATA AGG GTA ATAA ATAA ATA ATA ATA
1 -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A AT-A ATA ATA ATA
* * * *
6801498 GTAA ATA ATA AGA ATA ATA ATA GA-A ATA A-A A-A AGA TTA ATA ATA
1 AT-A ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
6801542 ATA ATA ATG ATG ATA ATA GTA ATA GAAA ATA A-A A-A GATA GTA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA -ATA ATA ATA
* * * * * * ** *
6801587 AT- ATA GA-A ATA GTA ATA ATA GTC ATA AAA ACA AAA ATA ACG GTA
1 ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
6801631 ATA ATA ATAA ATA GTA ATA ATA ACA ATA AT- ATAA ATA ATA AT- ATA
1 ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA
6801676 CAT- ATGA ATA ATA ATA ATA ATA
1 -ATA AT-A ATA ATA ATA ATA ATA
6801698 GCAATAATTT
Statistics
Matches: 398, Mismatches: 124, Indels: 80
0.66 0.21 0.13
Matches are distributed among these distances:
2 37 0.09
3 320 0.80
4 38 0.10
5 3 0.01
ACGTcount: A:0.60, C:0.04, G:0.09, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:6802069 original size:24 final size:24
Alignment explanation
Indices: 6802042--6802108 Score: 116
Period size: 24 Copynumber: 2.8 Consensus size: 24
6802032 GGTTAAGGCT
*
6802042 CAAAACGACGTCGTTTTGGTGACC
1 CAAAATGACGTCGTTTTGGTGACC
6802066 CAAAATGACGTCGTTTTGGTGACC
1 CAAAATGACGTCGTTTTGGTGACC
*
6802090 CAAAATGACGTTGTTTTGG
1 CAAAATGACGTCGTTTTGG
6802109 GGGGCCATTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.30
Consensus pattern (24 bp):
CAAAATGACGTCGTTTTGGTGACC
Found at i:6802403 original size:21 final size:21
Alignment explanation
Indices: 6802379--6802425 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
6802369 AAGAGATTCG
* *
6802379 AAAAGAAAAGAAAGAAAATAA
1 AAAAAAAAAGAAAGAAAAGAA
6802400 AAAAAAAAAGAAAGAAAAGAA
1 AAAAAAAAAGAAAGAAAAGAA
6802421 AAAAA
1 AAAAA
6802426 TATATAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.02
Consensus pattern (21 bp):
AAAAAAAAAGAAAGAAAAGAA
Found at i:6805072 original size:246 final size:246
Alignment explanation
Indices: 6804631--6805339 Score: 1283
Period size: 246 Copynumber: 2.9 Consensus size: 246
6804621 ATTGCAAGAA
*
6804631 ATTCAAGAGATTCACAAATCATTACTGCATTAACACTGCAAATGCTCTTCAATTCAGGTAAAGAA
1 ATTCAAGAGATTCACAAATCATTACTGCATCAACACTGCAAATGCTCTTCAATTCAGGTAAAGAA
*
6804696 CACAATGTCATTTTCTTTAATCGTGGAAGACAAAATTTCATGGTAACCCTTCCTCTTTCCTCTGA
66 CACAATGTCATTTTCTTTAATCGTGGAAGACAAAATTCCATGGTAACCCTTCCTCTTTCCTCTGA
* * *
6804761 TGCTATTATTTCCTCCAGTTGGTCACAACACGAAACCTCAAGCTGTTTTAAATTTAGCGGCACAC
131 TGCTATTATTTCCTCCAGTTGGTCACAATACGAAACCTCAAGCTGTTCTAAATTTGGCGGCACAC
6804826 AGTTTGGAGAGAACAACCTTTTTAATTCCGGACAAGATATTACATCAAGCC
196 AGTTTGGAGAGAACAACCTTTTTAATTCCGGACAAGATATTACATCAAGCC
*
6804877 ATTCAAGAGATTCACAAATCATTACTGCATCAACACTTCAAATGCTCTTCAATTCAGGTAAAGAA
1 ATTCAAGAGATTCACAAATCATTACTGCATCAACACTGCAAATGCTCTTCAATTCAGGTAAAGAA
6804942 CACAATGTCATTTTCTTTAATCGTGGAAGACAAAATTCCATGGTAACCCTTCCTCTTTCCTCTGA
66 CACAATGTCATTTTCTTTAATCGTGGAAGACAAAATTCCATGGTAACCCTTCCTCTTTCCTCTGA
* * * * *
6805007 TGCTAATATTTCCTCCAGTTGGTCACATTTCGAAACCTCGAGCTGTTCTAAATTTGGCAGCACAC
131 TGCTATTATTTCCTCCAGTTGGTCACAATACGAAACCTCAAGCTGTTCTAAATTTGGCGGCACAC
*
6805072 AGTTTGGAGAGAACAACCTTTTTGATTCCGGACAAGATATTACATCAAGCC
196 AGTTTGGAGAGAACAACCTTTTTAATTCCGGACAAGATATTACATCAAGCC
6805123 ATTCAAGAGATTCACAAATCATTACTGCATCAACACTGCAAATGCTCTTCAATTCAGGTAAAGAA
1 ATTCAAGAGATTCACAAATCATTACTGCATCAACACTGCAAATGCTCTTCAATTCAGGTAAAGAA
6805188 CACAATGTCATTTTCTTTAATCGTGGAAGACAAAATTCCATGGTAACCCTTCCTCTTTCCTCTGA
66 CACAATGTCATTTTCTTTAATCGTGGAAGACAAAATTCCATGGTAACCCTTCCTCTTTCCTCTGA
* * *
6805253 TGCTATTATTTCCTCCAGTTGGTTACAATCCGAAACCTTAAGCTGTTCTAAATTTGGCGGCACAC
131 TGCTATTATTTCCTCCAGTTGGTCACAATACGAAACCTCAAGCTGTTCTAAATTTGGCGGCACAC
6805318 AGTTTGGAGAGAACAACCTTTT
196 AGTTTGGAGAGAACAACCTTTT
6805340 CGTATATTTT
Statistics
Matches: 443, Mismatches: 20, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
246 443 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (246 bp):
ATTCAAGAGATTCACAAATCATTACTGCATCAACACTGCAAATGCTCTTCAATTCAGGTAAAGAA
CACAATGTCATTTTCTTTAATCGTGGAAGACAAAATTCCATGGTAACCCTTCCTCTTTCCTCTGA
TGCTATTATTTCCTCCAGTTGGTCACAATACGAAACCTCAAGCTGTTCTAAATTTGGCGGCACAC
AGTTTGGAGAGAACAACCTTTTTAATTCCGGACAAGATATTACATCAAGCC
Found at i:6813738 original size:364 final size:364
Alignment explanation
Indices: 6813069--6813796 Score: 1447
Period size: 364 Copynumber: 2.0 Consensus size: 364
6813059 ATAAACAATT
6813069 TGTATCAAGTTGTAGTTAGTGAGCTCTGTTATAGAGTCTTGATTTTTCTATATTCGAACACATAT
1 TGTATCAAGTTGTAGTTAGTGAGCTCTGTTATAGAGTCTTGATTTTTCTATATTCGAACACATAT
6813134 GTCTTCAGATATAAGATAGATAGATGTGATCTTCATAGTATATGAAAATAACTGACATTCACCCT
66 GTCTTCAGATATAAGATAGATAGATGTGATCTTCATAGTATATGAAAATAACTGACATTCACCCT
6813199 TGAATTGGGCAACATATATAGTTAATGAGCATGGAGCAAAAAGCAATATATGTCATTGCAAGCAT
131 TGAATTGGGCAACATATATAGTTAATGAGCATGGAGCAAAAAGCAATATATGTCATTGCAAGCAT
6813264 GAAAAGGAACCAAGTTTGTTGCAGTTTATGAGACTTGAAAGAACAATAAAAAAGGTGAAATTCAA
196 GAAAAGGAACCAAGTTTGTTGCAGTTTATGAGACTTGAAAGAACAATAAAAAAGGTGAAATTCAA
6813329 TAAATACCTTTTCTGACTAACTTGTTGGATGGGTGATGATGACCACAAATGAGGAAAGCCAGCAA
261 TAAATACCTTTTCTGACTAACTTGTTGGATGGGTGATGATGACCACAAATGAGGAAAGCCAGCAA
6813394 AAGACGTCGCTGATAATATGATGGGAAACTGGTAGAAGG
326 AAGACGTCGCTGATAATATGATGGGAAACTGGTAGAAGG
6813433 TGTATCAAGTTGTAGTTAGTGAGCTCTGTTATAGAGTCTTGATTTTTCTATATTCGAACACATAT
1 TGTATCAAGTTGTAGTTAGTGAGCTCTGTTATAGAGTCTTGATTTTTCTATATTCGAACACATAT
6813498 GTCTTCAGATATAAGATAGATAGATGTGATCTTCATAGTATATGAAAATAACTGACATTCACCCT
66 GTCTTCAGATATAAGATAGATAGATGTGATCTTCATAGTATATGAAAATAACTGACATTCACCCT
6813563 TGAATTGGGCAACATATATAGTTAATGAGCATGGAGCAAAAAGCAATATATGTCATTGCAAGCAT
131 TGAATTGGGCAACATATATAGTTAATGAGCATGGAGCAAAAAGCAATATATGTCATTGCAAGCAT
6813628 GAAAAGGAACCAAGTTTGTTGCAGTTTATGAGACTTGAAAGAACAATAAAAAAGGTGAAATTCAA
196 GAAAAGGAACCAAGTTTGTTGCAGTTTATGAGACTTGAAAGAACAATAAAAAAGGTGAAATTCAA
6813693 TAAATACCTTTTCTGACTAACTTGTTGGATGGGTGATGATGACCACAAATGAGGAAAGCCAGCAA
261 TAAATACCTTTTCTGACTAACTTGTTGGATGGGTGATGATGACCACAAATGAGGAAAGCCAGCAA
*
6813758 AAGACGTTGCTGATAATATGATGGGAAACTGGTAGAAGG
326 AAGACGTCGCTGATAATATGATGGGAAACTGGTAGAAGG
6813797 GAGCCACTCC
Statistics
Matches: 363, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
364 363 1.00
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (364 bp):
TGTATCAAGTTGTAGTTAGTGAGCTCTGTTATAGAGTCTTGATTTTTCTATATTCGAACACATAT
GTCTTCAGATATAAGATAGATAGATGTGATCTTCATAGTATATGAAAATAACTGACATTCACCCT
TGAATTGGGCAACATATATAGTTAATGAGCATGGAGCAAAAAGCAATATATGTCATTGCAAGCAT
GAAAAGGAACCAAGTTTGTTGCAGTTTATGAGACTTGAAAGAACAATAAAAAAGGTGAAATTCAA
TAAATACCTTTTCTGACTAACTTGTTGGATGGGTGATGATGACCACAAATGAGGAAAGCCAGCAA
AAGACGTCGCTGATAATATGATGGGAAACTGGTAGAAGG
Found at i:6815279 original size:6 final size:6
Alignment explanation
Indices: 6815268--6815292 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
6815258 GTATAAAAAG
6815268 TAAGCA TAAGCA TAAGCA TAAGCA T
1 TAAGCA TAAGCA TAAGCA TAAGCA T
6815293 TAATATTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.16, G:0.16, T:0.20
Consensus pattern (6 bp):
TAAGCA
Found at i:6822858 original size:15 final size:15
Alignment explanation
Indices: 6822840--6822871 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
6822830 AATAATACTA
6822840 AATATATATATACAT
1 AATATATATATACAT
*
6822855 AATATATGTATACAT
1 AATATATATATACAT
6822870 AA
1 AA
6822872 CATGTATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.53, C:0.06, G:0.03, T:0.38
Consensus pattern (15 bp):
AATATATATATACAT
Found at i:6822920 original size:31 final size:32
Alignment explanation
Indices: 6822885--6822953 Score: 90
Period size: 31 Copynumber: 2.2 Consensus size: 32
6822875 GTATAAAATG
*
6822885 AACATATACAACATATATTAGA-AATACTA-AT
1 AACATATAAAACATATATTA-ATAATACTACAT
*
6822916 AACATAAAAAACATATATTAATAATACTACAT
1 AACATATAAAACATATATTAATAATACTACAT
6822948 AA-ATAT
1 AACATAT
6822954 GTACATATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
30 1 0.03
31 28 0.85
32 4 0.12
ACGTcount: A:0.58, C:0.12, G:0.01, T:0.29
Consensus pattern (32 bp):
AACATATAAAACATATATTAATAATACTACAT
Found at i:6823129 original size:22 final size:20
Alignment explanation
Indices: 6823096--6823137 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
6823086 CTAATAACAT
6823096 TAAAAATATATACATAATATA
1 TAAAAATATATACAT-ATATA
6823117 TAAAATATATATACATATATA
1 TAAAA-ATATATACATATATA
6823138 CATATATTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.36
Consensus pattern (20 bp):
TAAAAATATATACATATATA
Found at i:6823137 original size:30 final size:28
Alignment explanation
Indices: 6823100--6823165 Score: 82
Period size: 30 Copynumber: 2.3 Consensus size: 28
6823090 TAACATTAAA
6823100 AATATATACATAATATATA-AAAT-ATATAT
1 AATATATACAT-ATAT-TAGAAATGATA-AT
6823129 ACATATATACATATATTAGAAATGATAAT
1 A-ATATATACATATATTAGAAATGATAAT
6823158 AATATATA
1 AATATATA
6823166 AAAAAACTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
28 9 0.26
29 12 0.35
30 13 0.38
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (28 bp):
AATATATACATATATTAGAAATGATAAT
Found at i:6823259 original size:25 final size:26
Alignment explanation
Indices: 6823231--6823281 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
6823221 TGTTAGAAAT
6823231 ATAC-AATATAG-TATTAGAAATATAC
1 ATACAAATATAGTTATTA-AAATATAC
6823256 ATACATAATATAGTTATTAAAATATA
1 ATACA-AATATAGTTATTAAAATATA
6823282 TATATACATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 4 0.17
27 14 0.61
28 5 0.22
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.35
Consensus pattern (26 bp):
ATACAAATATAGTTATTAAAATATAC
Found at i:6823367 original size:23 final size:24
Alignment explanation
Indices: 6823319--6823403 Score: 100
Period size: 23 Copynumber: 3.5 Consensus size: 24
6823309 AAATACATAA
* *
6823319 ATAATATAGTATTGAAAATATGTAC
1 ATAATATA-TATTAAAAATATATAC
6823344 ATAATATATA-TAAAAATATATAC
1 ATAATATATATTAAAAATATATAC
* *
6823367 ATAATATCTATTAAAAGAATATACAC
1 ATAATATATATT-AAA-AATATATAC
6823393 ATAATATATAT
1 ATAATATATAT
6823404 GCATGTATTA
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
23 20 0.38
24 3 0.06
25 11 0.21
26 18 0.35
ACGTcount: A:0.54, C:0.06, G:0.05, T:0.35
Consensus pattern (24 bp):
ATAATATATATTAAAAATATATAC
Found at i:6823388 original size:24 final size:23
Alignment explanation
Indices: 6823307--6823403 Score: 95
Period size: 23 Copynumber: 4.0 Consensus size: 23
6823297 ATATGTAAGA
* *
6823307 AAAAATACATAAATAATATAGTATT
1 AAAAATATATACATAATATA-TA-T
* *
6823332 GAAAATATGTACATAATATATAT
1 AAAAATATATACATAATATATAT
*
6823355 AAAAATATATACATAATATCTATT
1 AAAAATATATACATAATATATA-T
*
6823379 AAAAGAATATACACATAATATATAT
1 -AAA-AATATATACATAATATATAT
6823404 GCATGTATTA
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
23 20 0.33
24 3 0.05
25 20 0.33
26 17 0.28
ACGTcount: A:0.57, C:0.06, G:0.04, T:0.33
Consensus pattern (23 bp):
AAAAATATATACATAATATATAT
Found at i:6823578 original size:3 final size:3
Alignment explanation
Indices: 6823572--6823646 Score: 51
Period size: 3 Copynumber: 23.7 Consensus size: 3
6823562 ATATGAAGAT
* * * * * *
6823572 TAA TAA TAG TAA TAG TAA CAA TAA TGA TAA TATA TATG TACA TGAA TAG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TA-A TA-A T-AA TAA
*
6823621 TAC TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
6823647 CTGAAATAAT
Statistics
Matches: 56, Mismatches: 14, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
3 46 0.82
4 9 0.16
5 1 0.02
ACGTcount: A:0.55, C:0.04, G:0.08, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:6823635 original size:6 final size:6
Alignment explanation
Indices: 6823527--6823646 Score: 52
Period size: 6 Copynumber: 19.8 Consensus size: 6
6823517 TAGTAAAAAC
* * * *
6823527 TAATAA T-ATAA -AATAA AAATAA -AGA-AA TAACAA TAAT-A TGAAGAT
1 TAATAA TAATAA TAATAA TAATAA TA-ATAA TAATAA TAATAA T-AATAA
* * * * * * *
6823572 TAATAA TAGTAA TAGTAA CAATAA TGATAA TATATATG TACATGAA TAGTAC
1 TAATAA TAATAA TAATAA TAATAA TAATAA TA-ATA-A TA-AT-AA TAATAA
6823624 TAATAA TAATAA TAATAA TAATA
1 TAATAA TAATAA TAATAA TAATA
6823647 CTGAAATAAT
Statistics
Matches: 86, Mismatches: 18, Indels: 20
0.69 0.15 0.16
Matches are distributed among these distances:
5 14 0.16
6 60 0.70
7 5 0.06
8 6 0.07
9 1 0.01
ACGTcount: A:0.59, C:0.03, G:0.07, T:0.30
Consensus pattern (6 bp):
TAATAA
Found at i:6823636 original size:9 final size:9
Alignment explanation
Indices: 6823527--6823646 Score: 52
Period size: 9 Copynumber: 13.2 Consensus size: 9
6823517 TAGTAAAAAC
6823527 TAATAAT-A
1 TAATAATAA
6823535 TAA-AATAA
1 TAATAATAA
*
6823543 AAATAA-AGA
1 TAATAATA-A
*
6823552 -AATAACAA
1 TAATAATAA
6823560 TAAT-ATGAA
1 TAATAAT-AA
* *
6823569 GATTAATAA
1 TAATAATAA
* *
6823578 TAGTAATAG
1 TAATAATAA
*
6823587 TAACAATAA
1 TAATAATAA
*
6823596 TGATAATATA
1 TAATAATA-A
*
6823606 TATGTACATGAA
1 TA-ATA-AT-AA
* *
6823618 TAGTACTAA
1 TAATAATAA
6823627 TAATAATAA
1 TAATAATAA
6823636 TAATAATAA
1 TAATAATAA
6823645 TA
1 TA
6823647 CTGAAATAAT
Statistics
Matches: 84, Mismatches: 17, Indels: 21
0.69 0.14 0.17
Matches are distributed among these distances:
7 3 0.04
8 14 0.17
9 51 0.61
10 5 0.06
11 5 0.06
12 5 0.06
13 1 0.01
ACGTcount: A:0.59, C:0.03, G:0.07, T:0.30
Consensus pattern (9 bp):
TAATAATAA
Found at i:6826489 original size:35 final size:35
Alignment explanation
Indices: 6826450--6826518 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
6826440 ACTTGCCTCT
6826450 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
6826485 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
6826519 TCACACACCC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.17, C:0.51, G:0.12, T:0.20
Consensus pattern (35 bp):
TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
Found at i:6827378 original size:3 final size:3
Alignment explanation
Indices: 6827363--6827520 Score: 298
Period size: 3 Copynumber: 52.3 Consensus size: 3
6827353 GTTATTTTCA
*
6827363 TAT TAT TAA TAT TAT TAT TATT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT
6827409 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
6827457 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
6827505 TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT T
6827521 GTACATTAGT
Statistics
Matches: 152, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
3 149 0.98
4 3 0.02
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:6827839 original size:22 final size:23
Alignment explanation
Indices: 6827811--6827865 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 23
6827801 AATTTTTTTA
6827811 ATATATATTATATGAATA-ATTT
1 ATATATATTATATGAATATATTT
* *
6827833 ATATATAATATTATGTATATATTT
1 ATATATATTA-TATGAATATATTT
6827857 -TA-ATATTAT
1 ATATATATTAT
6827866 CAGTTATATA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 1 0.04
22 14 0.50
23 9 0.32
24 4 0.14
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.53
Consensus pattern (23 bp):
ATATATATTATATGAATATATTT
Found at i:6839616 original size:22 final size:22
Alignment explanation
Indices: 6839573--6839622 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
6839563 AAAAATGGAA
6839573 ATTTTTATAAAATAAATGAGTTT
1 ATTTTTATAAAATAAATGAG-TT
*
6839596 ATTTTT-TAAAA-AAATATAGTT
1 ATTTTTATAAAATAAAT-GAGTT
6839617 ATTTTT
1 ATTTTT
6839623 GAAATTATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 12 0.48
22 7 0.28
23 6 0.24
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (22 bp):
ATTTTTATAAAATAAATGAGTT
Found at i:6840736 original size:21 final size:21
Alignment explanation
Indices: 6840707--6840747 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
6840697 TGACACAAAC
*
6840707 AGTTAAAAATAGTAAAAAAAT
1 AGTTAAAAACAGTAAAAAAAT
*
6840728 AGTTGAAAACAGTAAAAAAA
1 AGTTAAAAACAGTAAAAAAA
6840748 ATTGAATTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.66, C:0.02, G:0.12, T:0.20
Consensus pattern (21 bp):
AGTTAAAAACAGTAAAAAAAT
Found at i:6840815 original size:27 final size:27
Alignment explanation
Indices: 6840785--6840840 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
6840775 ATAATAAAAT
6840785 ACTGGTATTGCCTCTACCAGAGGTGGC
1 ACTGGTATTGCCTCTACCAGAGGTGGC
*
6840812 ACTGGTCTTGCCTCTACCAGAGGTGGC
1 ACTGGTATTGCCTCTACCAGAGGTGGC
6840839 AC
1 AC
6840841 CAGTTGGTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.25
Consensus pattern (27 bp):
ACTGGTATTGCCTCTACCAGAGGTGGC
Found at i:6841435 original size:27 final size:27
Alignment explanation
Indices: 6841397--6841452 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
6841387 ATACCAACTG
*
6841397 GTGCCGCCTCTGGCAAAGGCAAGACCA
1 GTGCCGCCTCTGACAAAGGCAAGACCA
* *
6841424 GTGCTGCCTCTGACAGAGGCAAGACCA
1 GTGCCGCCTCTGACAAAGGCAAGACCA
6841451 GT
1 GT
6841453 ATTTTATAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.25, C:0.30, G:0.30, T:0.14
Consensus pattern (27 bp):
GTGCCGCCTCTGACAAAGGCAAGACCA
Found at i:6841514 original size:21 final size:21
Alignment explanation
Indices: 6841490--6841534 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
6841480 AGATTCAATT
6841490 TTTTTTTACTATTTTCAACTG
1 TTTTTTTACTATTTTCAACTG
* *
6841511 TTTTTTTATTGTTTTCAACTG
1 TTTTTTTACTATTTTCAACTG
6841532 TTT
1 TTT
6841535 GTATCAGGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.16, C:0.11, G:0.07, T:0.67
Consensus pattern (21 bp):
TTTTTTTACTATTTTCAACTG
Found at i:6842153 original size:96 final size:98
Alignment explanation
Indices: 6841991--6842166 Score: 241
Period size: 96 Copynumber: 1.8 Consensus size: 98
6841981 AATTTTAAGG
* * * ** * *
6841991 TTTTAAGGAAAAAAATTAAATAAATTAGGGTTTAGTATTTGTTAATTAAATTATTTACTAATTTT
1 TTTTAAGGAAAAAAATCAAATAAATTAGGGTGTAGGATTACTTAAGTAAATTAATTACTAATTTT
6842056 -AAAAAATTATATTATGGTTTAGTGTTGATGGT
66 AAAAAAATTATATTATGGTTTAGTGTTGATGGT
* *
6842088 TTTTAAGG-AAAAAATCAAATAAATTAGGGTGTAGGGTTACTTGAGTAAATTAATTA-TAAATTT
1 TTTTAAGGAAAAAAATCAAATAAATTAGGGTGTAGGATTACTTAAGTAAATTAATTACT-AATTT
6842151 TAAAAAAATTATATTA
65 TAAAAAAATTATATTA
6842167 GGATTTTAGG
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
95 1 0.01
96 45 0.66
97 22 0.32
ACGTcount: A:0.43, C:0.02, G:0.14, T:0.41
Consensus pattern (98 bp):
TTTTAAGGAAAAAAATCAAATAAATTAGGGTGTAGGATTACTTAAGTAAATTAATTACTAATTTT
AAAAAAATTATATTATGGTTTAGTGTTGATGGT
Found at i:6842493 original size:126 final size:126
Alignment explanation
Indices: 6842276--6842813 Score: 821
Period size: 126 Copynumber: 4.3 Consensus size: 126
6842266 AAAAGCTTCT
* * *
6842276 ACGTGGACGCTCTTGTGTTACAGTAGTCTCTGAAAAAATTAA-TTTGAGAAGACGTGTCTGCTCA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAA-TAATTTTGAGAAGACGTGTCTGCGCA
*
6842340 AATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGTAAAAGTACTGAAAGAAGCTCCC
65 AATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * *
6842402 ACCTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGTGTCTGTGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* * * *
6842467 ATAGTGTAAAAAAAGCTTCAAGCAGGATGCATTGTCAGCAAAAGTATTGAAAGAAGCTTCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
*
6842528 ACGTAGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* * * *
6842593 ATAGTGGT-AAAAACGCTTCAAGCAGGATGCATTTTTAGCAAAATTACTGGAAGAAGCTCCC
66 ATAGT-GTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * * * **
6842654 ATGTGGATGCTCTTTTGCTACAGTGGTCTCTGAAAAAATAATTTTGAAAAGACGTGTCTGCATAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
6842719 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATT-TCAGCAAAAGTACTGAAAGAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* *
6842779 ACGTGGACGCTCTTTTGCTACAGTGGTTTCTGAAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAA
6842814 TAACTTGGGC
Statistics
Matches: 374, Mismatches: 35, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
125 61 0.16
126 311 0.83
127 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (126 bp):
ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
Found at i:6845986 original size:116 final size:116
Alignment explanation
Indices: 6845811--6846425 Score: 1167
Period size: 116 Copynumber: 5.3 Consensus size: 116
6845801 TTTATATTTT
* * *
6845811 ATTACATGAAATAATATAAAAATATTCAAAATATTGCTTTATTTAAAATAATTTTCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
* * *
6845876 AAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATATT
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
6845927 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
6845992 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
6846043 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
6846108 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
6846159 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
6846224 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
6846275 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
6846340 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
*
6846391 ATTACATGAAATAATATAAAAAGATTCAAAATGTT
1 ATTACATGAAATAATATAAAAATATTCAAAATGTT
6846426 TGTACAAATA
Statistics
Matches: 492, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
116 492 1.00
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (116 bp):
ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
Found at i:6846841 original size:17 final size:18
Alignment explanation
Indices: 6846815--6846854 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
6846805 GATAAAGGAA
*
6846815 ACATATAAGGGCT-AGAT
1 ACATAAAAGGGCTCAGAT
6846832 ACATAAAAGGGCTCAGAT
1 ACATAAAAGGGCTCAGAT
6846850 ACATA
1 ACATA
6846855 CCTGGCATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.45, C:0.15, G:0.20, T:0.20
Consensus pattern (18 bp):
ACATAAAAGGGCTCAGAT
Found at i:6848609 original size:15 final size:15
Alignment explanation
Indices: 6848589--6848619 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
6848579 TTTTTATTTT
*
6848589 AAAAAATAAATTTAG
1 AAAAAATAAAATTAG
6848604 AAAAAATAAAATTAG
1 AAAAAATAAAATTAG
6848619 A
1 A
6848620 GCTTTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (15 bp):
AAAAAATAAAATTAG
Found at i:6848658 original size:22 final size:22
Alignment explanation
Indices: 6848646--6848692 Score: 64
Period size: 20 Copynumber: 2.2 Consensus size: 22
6848636 TAACGAGATT
6848646 TTTGAGAGGAATTTAAGAGAAA
1 TTTGAGAGGAATTTAAGAGAAA
6848668 TTTGAGA-G-ATTTGAA-AGAAA
1 TTTGAGAGGAATTT-AAGAGAAA
6848688 TTTGA
1 TTTGA
6848693 AAGAATATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 14 0.58
21 3 0.12
22 7 0.29
ACGTcount: A:0.43, C:0.00, G:0.26, T:0.32
Consensus pattern (22 bp):
TTTGAGAGGAATTTAAGAGAAA
Found at i:6848686 original size:20 final size:22
Alignment explanation
Indices: 6848663--6848707 Score: 67
Period size: 20 Copynumber: 2.1 Consensus size: 22
6848653 GGAATTTAAG
*
6848663 AGAAATTTGAGAG-AT-TTGAA
1 AGAAATTTGAAAGAATATTGAA
6848683 AGAAATTTGAAAGAATATTGAA
1 AGAAATTTGAAAGAATATTGAA
6848705 AGA
1 AGA
6848708 TTGAAGATTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 12 0.55
21 2 0.09
22 8 0.36
ACGTcount: A:0.51, C:0.00, G:0.22, T:0.27
Consensus pattern (22 bp):
AGAAATTTGAAAGAATATTGAA
Found at i:6848690 original size:11 final size:11
Alignment explanation
Indices: 6848663--6848707 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
6848653 GGAATTTAAG
6848663 AGAAATTTG--
1 AGAAATTTGAA
*
6848672 AGAGATTTGAA
1 AGAAATTTGAA
6848683 AGAAATTTGAA
1 AGAAATTTGAA
6848694 AG-AATATTGAA
1 AGAAAT-TTGAA
6848705 AGA
1 AGA
6848708 TTGAAGATTG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
9 8 0.27
10 3 0.10
11 19 0.63
ACGTcount: A:0.51, C:0.00, G:0.22, T:0.27
Consensus pattern (11 bp):
AGAAATTTGAA
Found at i:6851437 original size:20 final size:21
Alignment explanation
Indices: 6851412--6851451 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
6851402 AAATCATTGA
6851412 TAAATCCAA-CCAACTTTTCT
1 TAAATCCAAGCCAACTTTTCT
*
6851432 TAAATCCAAGCCATCTTTTC
1 TAAATCCAAGCCAACTTTTC
6851452 ATAGGCATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.33, C:0.30, G:0.03, T:0.35
Consensus pattern (21 bp):
TAAATCCAAGCCAACTTTTCT
Found at i:6853415 original size:107 final size:107
Alignment explanation
Indices: 6853225--6853434 Score: 316
Period size: 107 Copynumber: 2.0 Consensus size: 107
6853215 CACACAAAAA
* *
6853225 TTTAATTCAATGTTTTTCAATTGGCAGGTCTAAGTTAATTAGAATTTTAAAAGTTTTGAGTTAGA
1 TTTAATTCAATGTTTTTCAATTGACAGGTCTAAGTTAATTAGAATTATAAAAGTTTTGAGTTAGA
*
6853290 TTTTGTTTAATAAAAGAATTTTATTCAATC-AAATTTTAAAT
66 TTTTGTTTAATAAAAGAATTTTATTCAACCAAAATTTTAAAT
* *
6853331 TTTAATTCAATTTTTTTTCAATTGATAGGTCTTAA-TTAATTAGAATTATAAAAGTTTTGAGTTA
1 TTTAATTCAA-TGTTTTTCAATTGACAGGTC-TAAGTTAATTAGAATTATAAAAGTTTTGAGTTA
* * *
6853395 GATTTTGTTTAGTGATAGAATTTTATTCAACCAAAATTTT
64 GATTTTGTTTAATAAAAGAATTTTATTCAACCAAAATTTT
6853435 TTTTTAAGTC
Statistics
Matches: 93, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
106 10 0.11
107 73 0.78
108 10 0.11
ACGTcount: A:0.35, C:0.06, G:0.12, T:0.48
Consensus pattern (107 bp):
TTTAATTCAATGTTTTTCAATTGACAGGTCTAAGTTAATTAGAATTATAAAAGTTTTGAGTTAGA
TTTTGTTTAATAAAAGAATTTTATTCAACCAAAATTTTAAAT
Found at i:6857483 original size:37 final size:37
Alignment explanation
Indices: 6857260--6857481 Score: 372
Period size: 37 Copynumber: 6.0 Consensus size: 37
6857250 AGCTAAAGCT
* *
6857260 ACCACTTATCACTTTATCACTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
*
6857297 GCCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
*
6857334 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
*
6857371 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
*
6857408 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
* *
6857445 GCCACTTATCACTTTGTCACTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
6857482 GCTAAAACTA
Statistics
Matches: 177, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 177 1.00
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.38
Consensus pattern (37 bp):
ACCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
Found at i:6859660 original size:25 final size:25
Alignment explanation
Indices: 6859632--6859701 Score: 81
Period size: 25 Copynumber: 2.8 Consensus size: 25
6859622 TTCTATTATA
*
6859632 TTCTAGTTTGTCCTGTTCTGATATG
1 TTCTAGTCTGTCCTGTTCTGATATG
* *
6859657 TTCTA-TCCTGTCTTGTTCTAATATG
1 TTCTAGT-CTGTCCTGTTCTGATATG
6859682 TTCT-GCTCTGTCCTGTTCTG
1 TTCTAG-TCTGTCCTGTTCTG
6859702 CTCTATTCTG
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
24 1 0.03
25 35 0.95
26 1 0.03
ACGTcount: A:0.10, C:0.21, G:0.17, T:0.51
Consensus pattern (25 bp):
TTCTAGTCTGTCCTGTTCTGATATG
Found at i:6862147 original size:90 final size:91
Alignment explanation
Indices: 6862079--6862307 Score: 268
Period size: 90 Copynumber: 2.5 Consensus size: 91
6862069 TTTTATTATA
* *
6862079 TACGTAAATATACCCT-TTTTA-TTATTTTACCTTATTATATTTATTATTTATTTTTAACACATT
1 TACGTAAATATACCATATTATATTTATTTTA-CTT-TTATATTTATTATTTATTTTTAACACATT
6862142 ATTA-TTTATATCATCGTTTTATTTAAT
64 ATTATTTTATATCATCGTTTTATTTAAT
** ** ** *
6862169 TTTGTTTATATATTATATTATATTTTTTTTACTTTTATATTTATTATTTATTTTTAACACATTAT
1 TACGTAAATATACCATATTATATTTATTTTACTTTTATATTTATTATTTATTTTTAACACATTAT
6862234 TA-TTTATATCATCGTTTTATTTAAT
66 TATTTTATATCATCGTTTTATTTAAT
** ** ** *
6862259 TTTGTTTATATATTATATTATATTTTTTTTACTTTTATATTTATTATTT
1 TACGTAAATATACCATATTATATTTATTTTACTTTTATATTTATTATTT
6862308 CCACTATATT
Statistics
Matches: 128, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
90 114 0.89
91 7 0.05
92 7 0.05
ACGTcount: A:0.28, C:0.07, G:0.02, T:0.63
Consensus pattern (91 bp):
TACGTAAATATACCATATTATATTTATTTTACTTTTATATTTATTATTTATTTTTAACACATTAT
TATTTTATATCATCGTTTTATTTAAT
Found at i:6862187 original size:23 final size:23
Alignment explanation
Indices: 6862161--6862242 Score: 62
Period size: 22 Copynumber: 3.4 Consensus size: 23
6862151 ATCATCGTTT
6862161 TATTTA-ATTTTGTTTATA-TATTA
1 TATTTATATTTT-TTT-TACTATTA
*
6862184 TA-TTATATTTTTTTTACTTTTA
1 TATTTATATTTTTTTTACTATTA
*
6862206 TATTTATTATTTATTTTTAACACATTA
1 TATTTA-TATTT-TTTTT-AC-TATTA
6862233 TTATTTATAT
1 -TATTTATAT
6862243 CATCGTTTTA
Statistics
Matches: 48, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
21 2 0.04
22 12 0.25
23 10 0.21
24 5 0.10
25 5 0.10
26 2 0.04
27 6 0.12
28 6 0.12
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.66
Consensus pattern (23 bp):
TATTTATATTTTTTTTACTATTA
Found at i:6862208 original size:17 final size:19
Alignment explanation
Indices: 6862186--6862341 Score: 64
Period size: 17 Copynumber: 8.5 Consensus size: 19
6862176 ATATATTATA
6862186 TTATATTT-TT-TTTACTT
1 TTATATTTATTATTTACTT
*
6862203 TTATATTTATTATTTATTT
1 TTATATTTATTATTTACTT
* * *
6862222 TTAACACATTATTATTTA-TA
1 TT-ATA-TTTATTATTTACTT
* ** *
6862242 TCATCGTT-TTATTTA-AT
1 TTATATTTATTATTTACTT
* *
6862259 TT-TGTTTA-TATATTA-TA
1 TTATATTTATTAT-TTACTT
6862276 TTATATTT-TT-TTTACTT
1 TTATATTTATTATTTACTT
**
6862293 TTATATTTATTATTT-CCA
1 TTATATTTATTATTTACTT
* *
6862311 CTATATTTATTCTTTACTT
1 TTATATTTATTATTTACTT
6862330 ATTATTATTTAT
1 -TTA-TATTTAT
6862342 GTATATATAT
Statistics
Matches: 101, Mismatches: 24, Indels: 24
0.68 0.16 0.16
Matches are distributed among these distances:
16 9 0.09
17 31 0.31
18 25 0.25
19 13 0.13
20 6 0.06
21 17 0.17
ACGTcount: A:0.26, C:0.07, G:0.01, T:0.65
Consensus pattern (19 bp):
TTATATTTATTATTTACTT
Found at i:6862212 original size:28 final size:28
Alignment explanation
Indices: 6862173--6862302 Score: 93
Period size: 28 Copynumber: 4.4 Consensus size: 28
6862163 TTTAATTTTG
6862173 TTTATATATTATATTATATTTTTTTTACT
1 TTTATAT-TTATATTATATTTTTTTTACT
***
6862202 TTTATATTTATTATT-TATTTTTAACAC-
1 TTTATATTTA-TATTATATTTTTTTTACT
* * * **
6862229 ATTATTATTTATATCATCGTTTTATTTAATTTT
1 TTTA-TATTTATATTAT-ATTTT-TTT--TACT
6862262 GTTTATATATTATATTATATTTTTTTTACT
1 -TTTATAT-TTATATTATATTTTTTTTACT
6862292 TTTATATTTAT
1 TTTATATTTAT
6862303 TATTTCCACT
Statistics
Matches: 75, Mismatches: 16, Indels: 21
0.67 0.14 0.19
Matches are distributed among these distances:
27 6 0.08
28 23 0.31
29 22 0.29
30 3 0.04
32 3 0.04
33 7 0.09
34 11 0.15
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.66
Consensus pattern (28 bp):
TTTATATTTATATTATATTTTTTTTACT
Found at i:6862223 original size:19 final size:17
Alignment explanation
Indices: 6862186--6862224 Score: 51
Period size: 19 Copynumber: 2.2 Consensus size: 17
6862176 ATATATTATA
6862186 TTATATTTTTTTTACTT
1 TTATATTTTTTTTACTT
*
6862203 TTATATTTATTATTTATTT
1 TTATATTT-TT-TTTACTT
6862222 TTA
1 TTA
6862225 ACACATTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 8 0.42
18 2 0.11
19 9 0.47
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (17 bp):
TTATATTTTTTTTACTT
Found at i:6862277 original size:23 final size:23
Alignment explanation
Indices: 6862251--6862307 Score: 57
Period size: 22 Copynumber: 2.5 Consensus size: 23
6862241 ATCATCGTTT
6862251 TATTTA-ATTTTGTTTATA-TATTA
1 TATTTATATTTT-TTT-TACTATTA
*
6862274 TA-TTATATTTTTTTTACTTTTA
1 TATTTATATTTTTTTTACTATTA
6862296 TATTTATTATTT
1 TATTTA-TATTT
6862308 CCACTATATT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
21 2 0.07
22 12 0.41
23 10 0.34
24 5 0.17
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (23 bp):
TATTTATATTTTTTTTACTATTA
Found at i:6868417 original size:77 final size:71
Alignment explanation
Indices: 6868313--6868465 Score: 200
Period size: 77 Copynumber: 2.1 Consensus size: 71
6868303 TTTGTCATTG
* *
6868313 CTCTCACATGCGCCATTAAACACCAAAAATAGAAAGAGAAAAAGGTGGGGGGGCTTTTTCACCA-
1 CTCTCACATGCACCATTAAACACCAAAAACAGAAAGAG-AAAA-----GGGGGCTTTTTCACCAT
6868377 TTTTCTTCATCC
60 TTTTCTTCATCC
*
6868389 CTCTCACATGCCACCATTAAACAGCAAAAACAGAAAGAGAAAAGGGGGCTTTTTCACCATTTTTC
1 CTCTCACATG-CACCATTAAACACCAAAAACAGAAAGAGAAAAGGGGGCTTTTTCACCATTTTTC
*
6868454 TTCATTC
65 TTCATCC
6868461 CTCTC
1 CTCTC
6868466 GGCTCCCTCA
Statistics
Matches: 71, Mismatches: 4, Indels: 8
0.86 0.05 0.10
Matches are distributed among these distances:
71 16 0.23
72 16 0.23
76 14 0.20
77 25 0.35
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (71 bp):
CTCTCACATGCACCATTAAACACCAAAAACAGAAAGAGAAAAGGGGGCTTTTTCACCATTTTTCT
TCATCC
Found at i:6873415 original size:75 final size:75
Alignment explanation
Indices: 6873292--6873442 Score: 241
Period size: 75 Copynumber: 2.0 Consensus size: 75
6873282 ATTTGTTGAT
* *
6873292 ACACTAATGAGGAGATAAGGAAGAAAGCATAGTGGTTGTCAAAGAAGACGGTTCACCTAATCGAG
1 ACACTAATAAGGAGATAAGGAAGAAAGCATAATGGTTGTCAAAGAAGACGGTTCACCTAATCGAG
6873357 GTGGAGAGCC
66 GTGGAGAGCC
* * *
6873367 ACACTGATAAGGAGATAAGGATA-AAAGCATAATGGTTGTTAAGGAAGACGGTTCACCTAATCGA
1 ACACTAATAAGGAGATAAGGA-AGAAAGCATAATGGTTGTCAAAGAAGACGGTTCACCTAATCGA
6873431 GGTGGAGAGCC
65 GGTGGAGAGCC
6873442 A
1 A
6873443 AAGGGTATAA
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
75 69 0.99
76 1 0.01
ACGTcount: A:0.38, C:0.14, G:0.30, T:0.19
Consensus pattern (75 bp):
ACACTAATAAGGAGATAAGGAAGAAAGCATAATGGTTGTCAAAGAAGACGGTTCACCTAATCGAG
GTGGAGAGCC
Found at i:6873462 original size:75 final size:75
Alignment explanation
Indices: 6873301--6873462 Score: 220
Period size: 75 Copynumber: 2.2 Consensus size: 75
6873291 TACACTAATG
* *
6873301 AGGAGATAAGGA-AGAAAGCATAGTGGTTGTCAAAGAAGACGGTTCACCTAATCGAGGTGGAGAG
1 AGGAGAGAAGGATA-AAAGCATAATGGTTGTCAAAGAAGACGGTTCACCTAATCGAGGTGGAGAG
* *
6873365 CCACACTGATA
65 CCAAACGGATA
* * *
6873376 AGGAGATAAGGATAAAAGCATAATGGTTGTTAAGGAAGACGGTTCACCTAATCGAGGTGGAGAGC
1 AGGAGAGAAGGATAAAAGCATAATGGTTGTCAAAGAAGACGGTTCACCTAATCGAGGTGGAGAGC
*
6873441 CAAAGGGTATA
66 CAAACGG-ATA
6873452 AGGA-AGAAGGA
1 AGGAGAGAAGGA
6873463 GAATAAGTGG
Statistics
Matches: 78, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
75 70 0.90
76 8 0.10
ACGTcount: A:0.39, C:0.12, G:0.32, T:0.17
Consensus pattern (75 bp):
AGGAGAGAAGGATAAAAGCATAATGGTTGTCAAAGAAGACGGTTCACCTAATCGAGGTGGAGAGC
CAAACGGATA
Found at i:6880145 original size:18 final size:18
Alignment explanation
Indices: 6880122--6880168 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
6880112 GCACTCTCCC
*
6880122 TCACTTGATTCATCAGAA
1 TCACTTGAATCATCAGAA
6880140 TCACTTGAATCATCAGAA
1 TCACTTGAATCATCAGAA
*
6880158 TCACTAGAATC
1 TCACTTGAATC
6880169 TATAGCATGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.30
Consensus pattern (18 bp):
TCACTTGAATCATCAGAA
Found at i:6881362 original size:3 final size:3
Alignment explanation
Indices: 6881354--6881379 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
6881344 TATATAAGGG
6881354 GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GA
6881380 GACTAATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:6891653 original size:49 final size:49
Alignment explanation
Indices: 6891584--6891683 Score: 200
Period size: 49 Copynumber: 2.0 Consensus size: 49
6891574 TTACTTGTGC
6891584 AGTTGAGGCCAGTTTTCTCACAATCTAATTCTATTGTTTCTTTCTTTTG
1 AGTTGAGGCCAGTTTTCTCACAATCTAATTCTATTGTTTCTTTCTTTTG
6891633 AGTTGAGGCCAGTTTTCTCACAATCTAATTCTATTGTTTCTTTCTTTTG
1 AGTTGAGGCCAGTTTTCTCACAATCTAATTCTATTGTTTCTTTCTTTTG
6891682 AG
1 AG
6891684 AAGTGCTTCT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (49 bp):
AGTTGAGGCCAGTTTTCTCACAATCTAATTCTATTGTTTCTTTCTTTTG
Found at i:6892926 original size:41 final size:41
Alignment explanation
Indices: 6892869--6892951 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
6892859 AAACTAAGGC
6892869 TACACACATGTACTGTTCATGTTTCCACTGTTGAGAACCAT
1 TACACACATGTACTGTTCATGTTTCCACTGTTGAGAACCAT
6892910 TACACACATGTACTGTTCATGTTTCCACTGTTGAGAACCAT
1 TACACACATGTACTGTTCATGTTTCCACTGTTGAGAACCAT
6892951 T
1 T
6892952 CTTTTTGGGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (41 bp):
TACACACATGTACTGTTCATGTTTCCACTGTTGAGAACCAT
Found at i:6894603 original size:21 final size:21
Alignment explanation
Indices: 6894562--6894604 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
6894552 GGTGATGCTA
* *
6894562 CAAAAGATAGTTCTGCGGCTG
1 CAAAAGATAGTTCTCCAGCTG
*
6894583 CAAAAGATTGTTCTCCAGCTG
1 CAAAAGATAGTTCTCCAGCTG
6894604 C
1 C
6894605 TGATAAACAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (21 bp):
CAAAAGATAGTTCTCCAGCTG
Found at i:6898829 original size:82 final size:84
Alignment explanation
Indices: 6898665--6898830 Score: 309
Period size: 82 Copynumber: 2.0 Consensus size: 84
6898655 TCTCTCCCTC
*
6898665 CCATATCCCTTAGTTCAGCATGTTGACCCCCATTTTTTTTTATAACTACTTTTTTGATAAGTTCA
1 CCATATCCCTTAGTTCAGCATGTTGACCCCCATTTTTTTTTATAACCACTTTTTTGATAAGTTCA
6898730 TTCAAAAAGCTATAAGTAA
66 TTCAAAAAGCTATAAGTAA
6898749 CCATATCCCTTAGTTCAGCATGTTGACCCCCA-TTTTTTTTATAACCAC-TTTTTGATAAGTTCA
1 CCATATCCCTTAGTTCAGCATGTTGACCCCCATTTTTTTTTATAACCACTTTTTTGATAAGTTCA
6898812 TTCAAAAAGCTATAAGTAA
66 TTCAAAAAGCTATAAGTAA
6898831 AGGTTTGAAC
Statistics
Matches: 81, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
82 34 0.42
83 15 0.19
84 32 0.40
ACGTcount: A:0.30, C:0.21, G:0.10, T:0.39
Consensus pattern (84 bp):
CCATATCCCTTAGTTCAGCATGTTGACCCCCATTTTTTTTTATAACCACTTTTTTGATAAGTTCA
TTCAAAAAGCTATAAGTAA
Found at i:6899854 original size:54 final size:54
Alignment explanation
Indices: 6899795--6899903 Score: 200
Period size: 54 Copynumber: 2.0 Consensus size: 54
6899785 GTTAGTAAAC
*
6899795 TAGAAAAATAGAGAATGAATAAAAATTTTATATAAATATTTTTAAACTTATCTT
1 TAGAAAAATAGAGAATGAATAAAAATTTTATATAAATATTTTTAAAATTATCTT
*
6899849 TAGAAAAATAGAGAATGAATAAAATTTTTATATAAATATTTTTAAAATTATCTT
1 TAGAAAAATAGAGAATGAATAAAAATTTTATATAAATATTTTTAAAATTATCTT
6899903 T
1 T
6899904 TTCACTTGGA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.40
Consensus pattern (54 bp):
TAGAAAAATAGAGAATGAATAAAAATTTTATATAAATATTTTTAAAATTATCTT
Found at i:6902289 original size:42 final size:42
Alignment explanation
Indices: 6902230--6902356 Score: 200
Period size: 42 Copynumber: 3.0 Consensus size: 42
6902220 GTGTTTATTA
*
6902230 AAAAAAAGCGCCACTAAAAGTCATGGCCTTTAGCGGCGTTTT
1 AAAAAAAGCGCCGCTAAAAGTCATGGCCTTTAGCGGCGTTTT
* * *
6902272 AAAAAAAGCACCGCTAAAAGTCATGGCCTTTAGTGGCGTTTAG
1 AAAAAAAGCGCCGCTAAAAGTCATGGCCTTTAGCGGCGTTT-T
*
6902315 AAAAAAAGCGCCGCTAAAAGTCATGACCTTTAGCGGCGTTTT
1 AAAAAAAGCGCCGCTAAAAGTCATGGCCTTTAGCGGCGTTTT
6902357 TTCCACAAAC
Statistics
Matches: 76, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
42 38 0.50
43 38 0.50
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (42 bp):
AAAAAAAGCGCCGCTAAAAGTCATGGCCTTTAGCGGCGTTTT
Found at i:6902755 original size:21 final size:21
Alignment explanation
Indices: 6902729--6902769 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
6902719 TTCCTATGCT
6902729 CTGCCTCCCTCGCTGCTGCCG
1 CTGCCTCCCTCGCTGCTGCCG
*
6902750 CTGCCTCCCTCTCTGCTGCC
1 CTGCCTCCCTCGCTGCTGCC
6902770 TCCACTCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.00, C:0.54, G:0.20, T:0.27
Consensus pattern (21 bp):
CTGCCTCCCTCGCTGCTGCCG
Found at i:6903206 original size:13 final size:14
Alignment explanation
Indices: 6903181--6903209 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
6903171 TGATGAATTG
6903181 AATTAAACAATTAT
1 AATTAAACAATTAT
6903195 AATTAAAC-ATTAT
1 AATTAAACAATTAT
6903208 AA
1 AA
6903210 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:6903412 original size:16 final size:17
Alignment explanation
Indices: 6903375--6903413 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
6903365 AAAATATTAT
*
6903375 TTAATATTAGAAAGTTA
1 TTAATATTAGAAAGTAA
*
6903392 TTAATATTTGAAAG-AA
1 TTAATATTAGAAAGTAA
6903408 TTAATA
1 TTAATA
6903414 AAATTTTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (17 bp):
TTAATATTAGAAAGTAA
Found at i:6908430 original size:9 final size:9
Alignment explanation
Indices: 6908416--6908728 Score: 175
Period size: 9 Copynumber: 33.6 Consensus size: 9
6908406 TATTTAAGTA
6908416 TTATGTAAG
1 TTATGTAAG
*
6908425 TTATGTAAT
1 TTATGTAAG
*
6908434 TTATGATATG
1 TTATG-TAAG
* * *
6908444 ATATAT-AT
1 TTATGTAAG
*
6908452 TTATGTAAA
1 TTATGTAAG
* *
6908461 TTATAT-AT
1 TTATGTAAG
*
6908469 TTATCTAAG
1 TTATGTAAG
*
6908478 TTATATAAG
1 TTATGTAAG
6908487 TTATGTAAG
1 TTATGTAAG
*
6908496 TTATGTAAA
1 TTATGTAAG
*
6908505 TTATGATATAAAA
1 TTATG---T-AAG
*
6908518 TATATTTAAG
1 T-TATGTAAG
6908528 TATTATGTAAG
1 --TTATGTAAG
6908539 TTATGTAAG
1 TTATGTAAG
* *
6908548 TTATAT-AT
1 TTATGTAAG
*
6908556 TTATCTAAG
1 TTATGTAAG
*
6908565 TTATATAAG
1 TTATGTAAG
6908574 TTATGTAAG
1 TTATGTAAG
*
6908583 TTATGTAAA
1 TTATGTAAG
*
6908592 TTATGATATAAAA
1 TTATG---T-AAG
*
6908605 TATATTTAAG
1 T-TATGTAAG
6908615 TATTATGTAAG
1 --TTATGTAAG
6908626 TTATGTAAG
1 TTATGTAAG
* *
6908635 TTATAT-AT
1 TTATGTAAG
*
6908643 TTATCTAAG
1 TTATGTAAG
*
6908652 TTATATAAG
1 TTATGTAAG
*
6908661 TTATATAAG
1 TTATGTAAG
*
6908670 TTATGTATG
1 TTATGTAAG
*
6908679 TTATATAAG
1 TTATGTAAG
6908688 TTATGTAAG
1 TTATGTAAG
* *
6908697 TTATATATG
1 TTATGTAAG
**
6908706 TTACATAAG
1 TTATGTAAG
*
6908715 TTATGTAAA
1 TTATGTAAG
6908724 TTATG
1 TTATG
6908729 ATATCAAATA
Statistics
Matches: 238, Mismatches: 47, Indels: 38
0.74 0.15 0.12
Matches are distributed among these distances:
8 22 0.09
9 173 0.73
10 9 0.04
11 16 0.07
12 4 0.02
13 8 0.03
14 6 0.03
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:6908441 original size:43 final size:41
Alignment explanation
Indices: 6908396--6908642 Score: 180
Period size: 43 Copynumber: 6.1 Consensus size: 41
6908386 GTTATATATG
*
6908396 ATATGATATATATTTAAGTATTATGTAAGTTATGTAATTTAT
1 ATAT-ATATATATTTAAGTATTATGTAAGTTATGTAAGTTAT
* * * *
6908438 GATATGATATATATTTATGTAAATTATAT-ATTTATCTAAGTTAT
1 -ATAT-ATATATATTTAAGT--ATTATGTAAGTTATGTAAGTTAT
* * *
6908482 ATA-A-GT-TATGTAAG--TTATGTAAATTATG--A--TAT
1 ATATATATATATTTAAGTATTATGTAAGTTATGTAAGTTAT
6908514 A-A-A-ATATATTTAAGTATTATGTAAGTTATGTAAGTTAT
1 ATATATATATATTTAAGTATTATGTAAGTTATGTAAGTTAT
* * * *
6908552 ATATTTATCTAAGTTATA-TAAGTTATGTAAGTTATGTAAATTAT
1 ATATATATAT-ATTTA-AGT-A-TTATGTAAGTTATGTAAGTTAT
*
6908596 GATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT
1 -ATAT-ATATATATTTAAGTATTATGTAAGTTATGTAAGTTAT
6908639 ATAT
1 ATAT
6908643 TTATCTAAGT
Statistics
Matches: 161, Mismatches: 23, Indels: 41
0.72 0.10 0.18
Matches are distributed among these distances:
31 3 0.02
32 11 0.07
34 14 0.09
35 5 0.03
36 6 0.04
38 4 0.02
39 7 0.04
40 1 0.01
41 4 0.02
42 9 0.06
43 44 0.27
44 35 0.22
45 15 0.09
46 3 0.02
ACGTcount: A:0.40, C:0.01, G:0.12, T:0.47
Consensus pattern (41 bp):
ATATATATATATTTAAGTATTATGTAAGTTATGTAAGTTAT
Found at i:6908495 original size:18 final size:18
Alignment explanation
Indices: 6908416--6908728 Score: 194
Period size: 18 Copynumber: 17.3 Consensus size: 18
6908406 TATTTAAGTA
* *
6908416 TTATGTAAGTTATGTAAT
1 TTATGTAAGTTATATAAG
* * *
6908434 TTATGATATGATATAT-AT
1 TTATG-TAAGTTATATAAG
* *
6908452 TTATGTAAATTATAT-AT
1 TTATGTAAGTTATATAAG
*
6908469 TTATCTAAGTTATATAAG
1 TTATGTAAGTTATATAAG
* *
6908487 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATATAAG
*
6908505 TTATG--A--TATA-AAA
1 TTATGTAAGTTATATAAG
* *
6908518 TATATTTAAGTATTATGTAAG
1 T-TATGTAAG--TTATATAAG
*
6908539 TTATGTAAGTTATAT-AT
1 TTATGTAAGTTATATAAG
*
6908556 TTATCTAAGTTATATAAG
1 TTATGTAAGTTATATAAG
* *
6908574 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATATAAG
* *
6908592 TTATGATATAAAATATATTTAAG
1 TTATG---T-AAGT-TATATAAG
*
6908615 TATTATGTAAGTTATGTAAG
1 --TTATGTAAGTTATATAAG
* * *
6908635 TTATAT-ATTTATCTAAG
1 TTATGTAAGTTATATAAG
*
6908652 TTATATAAGTTATATAAG
1 TTATGTAAGTTATATAAG
*
6908670 TTATGTATGTTATATAAG
1 TTATGTAAGTTATATAAG
*
6908688 TTATGTAAGTTATATATG
1 TTATGTAAGTTATATAAG
** * *
6908706 TTACATAAGTTATGTAAA
1 TTATGTAAGTTATATAAG
6908724 TTATG
1 TTATG
6908729 ATATCAAATA
Statistics
Matches: 231, Mismatches: 45, Indels: 38
0.74 0.14 0.12
Matches are distributed among these distances:
13 4 0.02
14 6 0.03
16 2 0.01
17 52 0.23
18 121 0.52
19 7 0.03
20 17 0.07
21 7 0.03
22 4 0.02
23 6 0.03
25 5 0.02
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.47
Consensus pattern (18 bp):
TTATGTAAGTTATATAAG
Found at i:6908555 original size:87 final size:87
Alignment explanation
Indices: 6908452--6908676 Score: 432
Period size: 87 Copynumber: 2.6 Consensus size: 87
6908442 TGATATATAT
*
6908452 TTATGTAAATTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
6908517 ATATATTTAAGTATTATGTAAG
66 ATATATTTAAGTATTATGTAAG
6908539 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
6908604 ATATATTTAAGTATTATGTAAG
66 ATATATTTAAGTATTATGTAAG
*
6908626 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATATAAGTTATGTA
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTA
6908677 TGTTATATAA
Statistics
Matches: 136, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
87 136 1.00
ACGTcount: A:0.40, C:0.01, G:0.12, T:0.47
Consensus pattern (87 bp):
TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
ATATATTTAAGTATTATGTAAG
Found at i:6908853 original size:15 final size:15
Alignment explanation
Indices: 6908833--6908888 Score: 71
Period size: 15 Copynumber: 3.8 Consensus size: 15
6908823 AAGTAGCGGG
6908833 ATTAAATAATATTTA
1 ATTAAATAATATTTA
6908848 ATTAAATAATATTTA
1 ATTAAATAATATTTA
* *
6908863 GA-AAAATTAT-TTTA
1 -ATTAAATAATATTTA
6908877 ATTAAATAATAT
1 ATTAAATAATAT
6908889 ACATGTCGTT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
13 1 0.03
14 10 0.29
15 22 0.65
16 1 0.03
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.45
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:6909097 original size:24 final size:24
Alignment explanation
Indices: 6909065--6909132 Score: 111
Period size: 24 Copynumber: 2.8 Consensus size: 24
6909055 ACTTAAATGG
6909065 TAAAACGGACGATAATATTTGTGA
1 TAAAACGGACGATAATATTTGTGA
6909089 TAAAACGGA-GAATAATATTTGTGA
1 TAAAACGGACG-ATAATATTTGTGA
*
6909113 TAAAACGGACGAGAATATTT
1 TAAAACGGACGATAATATTT
6909133 CAATAATAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
23 1 0.02
24 39 0.95
25 1 0.02
ACGTcount: A:0.44, C:0.07, G:0.21, T:0.28
Consensus pattern (24 bp):
TAAAACGGACGATAATATTTGTGA
Found at i:6911495 original size:52 final size:52
Alignment explanation
Indices: 6911417--6911518 Score: 177
Period size: 52 Copynumber: 2.0 Consensus size: 52
6911407 TTGGAATAAC
* * *
6911417 CGAAGTTGTCGGATTTTCCATTAAAAATCATAGTTAAAATTCTAGGGAAACA
1 CGAAGTTGCCGGATTTTCCACTAAAAATCATAGTTAAAATTCTAAGGAAACA
6911469 CGAAGTTGCCGGATTTTCCACTAAAAATCATAGTTAAAATTCTAAGGAAA
1 CGAAGTTGCCGGATTTTCCACTAAAAATCATAGTTAAAATTCTAAGGAAA
6911519 GACAGTAAGT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (52 bp):
CGAAGTTGCCGGATTTTCCACTAAAAATCATAGTTAAAATTCTAAGGAAACA
Found at i:6919951 original size:14 final size:14
Alignment explanation
Indices: 6919929--6919968 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
6919919 TTTTTAAATA
6919929 AAAAT-ATAATTAT
1 AAAATAATAATTAT
**
6919942 AAAATAATAACAAT
1 AAAATAATAATTAT
6919956 AAAATAATAATTA
1 AAAATAATAATTA
6919969 ATTTATAATT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
13 5 0.23
14 17 0.77
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (14 bp):
AAAATAATAATTAT
Found at i:6920818 original size:213 final size:213
Alignment explanation
Indices: 6920511--6923650 Score: 4461
Period size: 213 Copynumber: 14.7 Consensus size: 213
6920501 ATCTGTGTTG
* * * *
6920511 TTTT-CCAGAAATCATGGGCACCATGGAGGAACTATATGAACTTGATTTAAGCGAAACGGCTTTG
1 TTTTCCCAGAAGTCATGGACACCATGGAGGAACTGTATGAACTTGATTTAAGCGGAACGGCTTTG
* * * * * **
6920575 AAAGAATTACCATCCTCAATTGGCAATCTTACTGGTCTTTACTATTGGAGAATGACCAACTGTAA
66 AAGGAATTACCATCCTCAATTGGCAATCTTATTGGTCTTAAGTATTTGAGAATGAAAAACTGTAA
*
6920640 AAACCTTGTTTGCCTTCCTGATAGCTTTTATAAATTGAAATCTCTTAAGACATTCGATCTTGAAG
131 AAACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTTAAGACATTCGATCTTGAAG
*
6920705 GTTGCTCGAGATTGGAGT
196 GTTGCTCGAGATTGGAGA
* * *
6920723 TTTTCCCAGAAGTCATGGACACCATGAAGGAACTGTATGAACTTGATTTAAGTGGAACAGCTTTG
1 TTTTCCCAGAAGTCATGGACACCATGGAGGAACTGTATGAACTTGATTTAAGCGGAACGGCTTTG
* * ** * * * * *
6920788 AAGGAATTATCATCCTCATTTGAAAATCTTATTGGTCTTAAGAAATTGAGACTTAAAAACTGTGA
66 AAGGAATTACCATCCTCAATTGGCAATCTTATTGGTCTTAAGTATTTGAGAATGAAAAACTGTAA
** * *
6920853 AAACCTTGCCTGCCTTCCTGACAACTTTTATAAATTGAAATCTCTTAAGACACTCGATCTTGAAG
131 AAACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTTAAGACATTCGATCTTGAAG
6920918 GTTGCTCGAGATTGGAGA
196 GTTGCTCGAGATTGGAGA
* * * *
6920936 TTTTCCCAGAAGTCATGGACAACATGGAGGAACTGGATGAACTTGATTTAAGAGGAACGACTTTG
1 TTTTCCCAGAAGTCATGGACACCATGGAGGAACTGTATGAACTTGATTTAAGCGGAACGGCTTTG
* *
6921001 AAGGAATTACCATTCTCAATTGGCAATCTTATTGGTATTAAGTATTTGAGAATGAAAAACTGTAA
66 AAGGAATTACCATCCTCAATTGGCAATCTTATTGGTCTTAAGTATTTGAGAATGAAAAACTGTAA
* *
6921066 AAACCTTGTTTGCCTTCCTGACAGTTTTTATAAATTAAAATCTCTTAAGACATTCGATCTTGAAG
131 AAACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTTAAGACATTCGATCTTGAAG
*
6921131 GTTGCTCGAGATTAGAGA
196 GTTGCTCGAGATTGGAGA
*
6921149 TTTTCCCAGAAGTCATGGACACCATGGAGGAACTGTATGAACTT-AGTTTAAGTGGAACGGCTTT
1 TTTTCCCAGAAGTCATGGACACCATGGAGGAACTGTATGAACTTGA-TTTAAGCGGAACGGCTTT
*
6921213 GAAGGAATTACCA-CTCTCAATTGGCAATCTTATTGGTCTTGAGTATTTG-GTAATGAAAAACTG
65 GAAGGAATTACCATC-CTCAATTGGCAATCTTATTGGTCTTAAGTATTTGAG-AATGAAAAACTG
* * *
6921276 TAAAAACCTTGTTTGCCTTCCTGATAGTTTTTATAAATTGAAATCTCTTAAGACATTCAATCTTG
128 TAAAAACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTTAAGACATTCGATCTTG
*
6921341 AAGGTTGCTTGAGATTGGAGA
193 AAGGTTGCTCGAGATTGGAGA
* * ** * *
6921362 TTTTCCCAGAAGTCATGGACACCATGAAGAGG--TTG-ACGGGTCTTGGTTTAAGC-TATACGGC
1 TTTTCCCAGAAGTCATGGACACCATG--GAGGAACTGTA-TGAACTTGATTTAAGCGGA-ACGGC
* *
6921423 TTTGAAGGAATTACCATCCTCAATTGGCAATCTTATTGGTCTTAAGGT-TTTGAGAATGCAATAC
62 TTTGAAGGAATTACCATCCTCAATTGGCAATCTTATTGGTCTTAA-GTATTTGAGAATGAAAAAC
* * *
6921487 TGTAGAAACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAAGCTCTTAAGACATTCAATCT
126 TGTAAAAACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTTAAGACATTCGATCT
*
6921552 TGAAGGTTGTTCGAGATTGGAGA
191 TGAAGGTTGCTCGAGATTGGAGA
* * * *
6921575 TTTTCCCAGAAGTCATGGACACTATGAAGGAACTGTATGAACTTGATTTAAGCAGAACGACTTTG
1 TTTTCCCAGAAGTCATGGACACCATGGAGGAACTGTATGAACTTGATTTAAGCGGAACGGCTTTG
* * * *
6921640 AAGGAATTACCATCCTCAGTTGGCAATCTTATTGGTATTAAGTATTTGAGAATGGAAAATTGTAA
66 AAGGAATTACCATCCTCAATTGGCAATCTTATTGGTCTTAAGTATTTGAGAATGAAAAACTGTAA
*
6921705 AAACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAAGCTCTTAAGACATTCGATCTTGAAG
131 AAACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTTAAGACATTCGATCTTGAAG
* * *
6921770 GTTGTTCGAGAGTAGAGA
196 GTTGCTCGAGATTGGAGA
* * *
6921788 TTTTCCCAGAAGTCATGGACACTATGAAGGAACTGTATGAACTTGATTTAAGCAGAACGGCTTTG
1 TTTTCCCAGAAGTCATGGACACCATGGAGGAACTGTATGAACTTGATTTAAGCGGAACGGCTTTG
* * *
6921853 AAGGAATTACCATCCTCAGTTGGCAATCTTATTGGTCTTAAGTATTTGAGAATGGAAAATTGTAA
66 AAGGAATTACCATCCTCAATTGGCAATCTTATTGGTCTTAAGTATTTGAGAATGAAAAACTGTAA
** **
6921918 AAACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTTAAGAGTTTATATCTTGAAG
131 AAACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTTAAGACATTCGATCTTGAAG
6921983 GTTGCTCGAGATTGGAGA
196 GTTGCTCGAGATTGGAGA
* * * *
6922001 TTTTCCCAGAAGTCATGGACACCATGGAGGGACTGTATAAACTTGATTTAAGTGGAACAGCTTTG
1 TTTTCCCAGAAGTCATGGACACCATGGAGGAACTGTATGAACTTGATTTAAGCGGAACGGCTTTG
** ** **
6922066 AAGGAATTACCATCCTCAATTGATAATCTTATTGGTCTTCAA-TATTTGAGCTTGAAGGACTGTA
66 AAGGAATTACCATCCTCAATTGGCAATCTTATTGGTCTT-AAGTATTTGAGAATGAAAAACTGTA
* ** * *
6922130 ACAACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTTCTGATATTCAATCTTGAA
130 AAAACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTTAAGACATTCGATCTTGAA
*
6922195 GGTTGCTTGAGATTGGAGA
195 GGTTGCTCGAGATTGGAGA
* * * * * *
6922214 TTTTTCGAGAAGTCATGGACATCGTGGA-G-A-GGT-TGAAGTTGCTTGATTTAAACGGAACGGC
1 TTTTCCCAGAAGTCATGGACACCATGGAGGAACTGTATGAA----CTTGATTTAAGCGGAACGGC
*
6922275 TTTGAAGGAATTACCATCCTCAATTGACAATCTTATTGGTCTTAAGTATTTG-GAAATGAAAAAC
62 TTTGAAGGAATTACCATCCTCAATTGGCAATCTTATTGGTCTTAAGTATTTGAG-AATGAAAAAC
* * ** *
6922339 TGTAAAAACCTTGTTTGCCTTCCTGACAGCTTTTATAAGTTGAAATCTCTTGAGGGATTCTATCT
126 TGTAAAAACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTTAAGACATTCGATCT
*
6922404 TAAAGGTTGCTCGAGATTGGAGA
191 TGAAGGTTGCTCGAGATTGGAGA
* ** * ** * * *
6922427 TTTTTCCAGAAGTCATGGACACCATGGA-GAGGT-TGACGGTTCTTGGTTTAAGTGGAACAGCTT
1 TTTTCCCAGAAGTCATGGACACCATGGAGGAACTGT-A-TGAACTTGATTTAAGCGGAACGGCTT
* *
6922490 TGAAAGAATTACCATCCTCAATTGGCAATCTTATTGGTCTTAAATATTTGAGAATGAAAAACTGT
64 TGAAGGAATTACCATCCTCAATTGGCAATCTTATTGGTCTTAAGTATTTGAGAATGAAAAACTGT
6922555 AAAAACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTTAAGACACTT-GATCTTG
129 AAAAACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTTAAGACA-TTCGATCTTG
*
6922619 AAGGTTGCTCGAGACTGGAGA
193 AAGGTTGCTCGAGATTGGAGA
* **
6922640 TTTTTCCAGAAGTCATGGACACCATGGAGGAACTGTATGAACTTGATTTAAGTAGAACGGCTTTG
1 TTTTCCCAGAAGTCATGGACACCATGGAGGAACTGTATGAACTTGATTTAAGCGGAACGGCTTTG
* * ** *
6922705 AAGGGATTACCATCCTCAATTGGAAATCTTATTGGTCTTAAGGGTTTGAGATTGAAAAACTGTAA
66 AAGGAATTACCATCCTCAATTGGCAATCTTATTGGTCTTAAGTATTTGAGAATGAAAAACTGTAA
* * * * * *
6922770 AAGCCTTATTTGCATTCCTAACAGCTTTTATAAATTGAAATCTCTTAAGACATTCCATCTTTG-T
131 AAACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTTAAGACATTCGATC-TTGAA
6922834 GGTTGCTCGAGATTGGAGA
195 GGTTGCTCGAGATTGGAGA
* *
6922853 TTTTCCCAGAAGTCATGGACACCATGGAGGAACTGTATAAACTTGATTTAAGCGGAACGGCTTTT
1 TTTTCCCAGAAGTCATGGACACCATGGAGGAACTGTATGAACTTGATTTAAGCGGAACGGCTTTG
6922918 AAGGAATTACCATCCTCAATTGGCAATCTTATTGGTCTTGAA-TATTTGAGAATGAAAAACTGTA
66 AAGGAATTACCATCCTCAATTGGCAATCTTATTGGTCTT-AAGTATTTGAGAATGAAAAACTGTA
* * * *
6922982 AAAGCCTTGTTTGCCTTCCTGACAGCTTTTATAATTTGAAATCTCTTGAGATATTCGATCTTGAA
130 AAAACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTTAAGACATTCGATCTTGAA
6923047 GGTTGCTCGAGATTGGAGA
195 GGTTGCTCGAGATTGGAGA
*
6923066 TTTTCCCAGAAGTCATGGACACCATAGAGGAACTGTATGAACTTGATTTAAGCGGAACGGCTTTG
1 TTTTCCCAGAAGTCATGGACACCATGGAGGAACTGTATGAACTTGATTTAAGCGGAACGGCTTTG
** *
6923131 AAGGAATTACCATCCTCAATTGATAATCTTATTGGTCTTCAGTATTTGAGAATGAAAAACTGTAA
66 AAGGAATTACCATCCTCAATTGGCAATCTTATTGGTCTTAAGTATTTGAGAATGAAAAACTGTAA
*
6923196 CAACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTTAAGACACTT-GATCTTGAA
131 AAACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTTAAGACA-TTCGATCTTGAA
*
6923260 GGTTGCTCGAGACTGGAGA
195 GGTTGCTCGAGATTGGAGA
* * *
6923279 TTTTTCCAGAAGTCATGGACACCATGGAGGAACTGTATAAACTTGATTTAAGCGGAACGGCTTTT
1 TTTTCCCAGAAGTCATGGACACCATGGAGGAACTGTATGAACTTGATTTAAGCGGAACGGCTTTG
6923344 AAGGAATTACCATCCTCAATTGGCAATCTTATTGGTCTTGAA-TATTTGAGAATGAAAAACTGTA
66 AAGGAATTACCATCCTCAATTGGCAATCTTATTGGTCTT-AAGTATTTGAGAATGAAAAACTGTA
* * * *
6923408 AAAGCCTTGTTTGCCTTCCTGACAGCTTTTATAATTTGAAATCTCTTGAGATATTCGATCTTGAA
130 AAAACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTTAAGACATTCGATCTTGAA
6923473 GGTTGCTCGAGATTGGAGA
195 GGTTGCTCGAGATTGGAGA
* **
6923492 TTTTCCCAGAAGTCATGGACACCATGGAGGAACTGTATAAACTTGATTTAAGCGGAACACCTTTG
1 TTTTCCCAGAAGTCATGGACACCATGGAGGAACTGTATGAACTTGATTTAAGCGGAACGGCTTTG
* * * * * * *
6923557 AAGGAATTACCATCCTCATTTGACAATCTTATTGGTCTTAAGAAATTGAGACTTAAAAATTGTAA
66 AAGGAATTACCATCCTCAATTGGCAATCTTATTGGTCTTAAGTATTTGAGAATGAAAAACTGTAA
* *
6923622 AAAACTTGTCTGCCTTCCTGACAGCTTTT
131 AAACCTTGTTTGCCTTCCTGACAGCTTTT
6923651 CTTCATTTTA
Statistics
Matches: 2629, Mismatches: 257, Indels: 83
0.89 0.09 0.03
Matches are distributed among these distances:
209 3 0.00
210 2 0.00
211 4 0.00
212 24 0.01
213 2566 0.98
214 24 0.01
215 5 0.00
217 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.33
Consensus pattern (213 bp):
TTTTCCCAGAAGTCATGGACACCATGGAGGAACTGTATGAACTTGATTTAAGCGGAACGGCTTTG
AAGGAATTACCATCCTCAATTGGCAATCTTATTGGTCTTAAGTATTTGAGAATGAAAAACTGTAA
AAACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTTAAGACATTCGATCTTGAAG
GTTGCTCGAGATTGGAGA
Found at i:6924102 original size:3 final size:3
Alignment explanation
Indices: 6924094--6924119 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
6924084 ATTACATCCA
6924094 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
6924120 AACATGTGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:6924540 original size:213 final size:213
Alignment explanation
Indices: 6924157--6925669 Score: 2199
Period size: 213 Copynumber: 7.1 Consensus size: 213
6924147 TGCTTCAATA
* * * *
6924157 CTTTTATAAATTGAAATCTCTTAAGACGTTCGATCTTGAAGGTTGTTTGAGATTGGAGATTTTCT
1 CTTTTATAAATTGAAATCTCTTAAGACATTCGATCTTGAAGGTTGCTCGAGATTGGAGATTTTCC
* * ** * ** *
6924222 TAGAAATCATGGACACCATGGA-GAGGT-TGACGGTTCTTGATTTAAG-TGAAGCAGCTTTGAAG
66 CAGAAGTCATGGACACCATGGAGGAACTGT-A-TGAACTTGATTTAAGCGGAA-CAGCTTTGAAG
* * * *
6924284 GAATTACCATCTTCAATTGACAACCTTATTGGTATTAAGTATTTGAGAATGAAAAACTATAAAAA
128 GAATTACCATCCTCAATTGACAATCTTATTGGTCTTAAGTATTTGAGAATGAAAAACTGTAAAAA
*
6924349 TCTTGTTTGCCTTCCTGACAG
193 CCTTGTTTGCCTTCCTGACAG
* ** * *
6924370 CTTTTCTAAATTGAAATCTCTTAAGAGGTTCGATCTTGAAGGTAGCTTGAGATTGGAGATTTTCC
1 CTTTTATAAATTGAAATCTCTTAAGACATTCGATCTTGAAGGTTGCTCGAGATTGGAGATTTTCC
*
6924435 CAGAAGTCATGGACACTATGGAGGAACTGTATGAACTTGATTTAAGCGGAACAGCTTTGAAGGAA
66 CAGAAGTCATGGACACCATGGAGGAACTGTATGAACTTGATTTAAGCGGAACAGCTTTGAAGGAA
* * *
6924500 TTACCATCCTCAATTGACAATCTTATTGGTCTTCAGTATTTGAGAATGAAAAATTGTAACAACCT
131 TTACCATCCTCAATTGACAATCTTATTGGTCTTAAGTATTTGAGAATGAAAAACTGTAAAAACCT
6924565 TGTTTGCCTTCCTGACAG
196 TGTTTGCCTTCCTGACAG
6924583 CTTTTATAAATTGAAATCTCTTAAGACATTCGATCTTGAAGGTTGCTCGAGATTGGAGATTTTCC
1 CTTTTATAAATTGAAATCTCTTAAGACATTCGATCTTGAAGGTTGCTCGAGATTGGAGATTTTCC
* * * *
6924648 CAGAAGTCATGGACACTATGGAGGAACTGTATGAACTCGATTTAAGAGGAACCGCTTTGAAGGAA
66 CAGAAGTCATGGACACCATGGAGGAACTGTATGAACTTGATTTAAGCGGAACAGCTTTGAAGGAA
* ** ** *
6924713 TTACCATCCTCAATTGACAATCTTATTGGTCTTCAGTATTTGAGCTTGAAGGACTGTGAAAACCT
131 TTACCATCCTCAATTGACAATCTTATTGGTCTTAAGTATTTGAGAATGAAAAACTGTAAAAACCT
6924778 TGTTTGCCTTCCTGACAG
196 TGTTTGCCTTCCTGACAG
* *
6924796 TTTTTATAAATTGAAATCTCTTGAGACATTCGATCTTGAAGGTTGCTCGAGATTGGAGATTTTCC
1 CTTTTATAAATTGAAATCTCTTAAGACATTCGATCTTGAAGGTTGCTCGAGATTGGAGATTTTCC
* ** *
6924861 CAGAAGTCATGGACACCATGGAAGAACTGTATGAACTTGATTTAAGTAGAACGGCTTTGAAGGAA
66 CAGAAGTCATGGACACCATGGAGGAACTGTATGAACTTGATTTAAGCGGAACAGCTTTGAAGGAA
* * * *
6924926 TTACCATCATCAGTTGGCAATCTTATTGGTCTTGAGTATTTGAGAATGAAAAACTGTAAAAACCT
131 TTACCATCCTCAATTGACAATCTTATTGGTCTTAAGTATTTGAGAATGAAAAACTGTAAAAACCT
*
6924991 TGTTTGCCTTCCTGATAG
196 TGTTTGCCTTCCTGACAG
6925009 CTTTTATAAATTGAAATCTCTTAAGACATTCGATCTTGAAGGTTGCTCGAGATTGGAGATTTTCC
1 CTTTTATAAATTGAAATCTCTTAAGACATTCGATCTTGAAGGTTGCTCGAGATTGGAGATTTTCC
*
6925074 CAGAAGTCATGGACACCATGGAGGAACTGTATGAACTTGATTTAAGCAGAACGAG-TTTGAAGGA
66 CAGAAGTCATGGACACCATGGAGGAACTGTATGAACTTGATTTAAGCGGAAC-AGCTTTGAAGGA
* ** * * * * *
6925138 ATTACCATCCTCAATTGGCAATCTTATTGGTCTTAAGGGTCTGAGATTGAAATACTGTGAAAACT
130 ATTACCATCCTCAATTGACAATCTTATTGGTCTTAAGTATTTGAGAATGAAAAACTGTAAAAACC
* *
6925203 TTATTTGCCTTCCTGACAA
195 TTGTTTGCCTTCCTGACAG
* * * *
6925222 CCTTTATAAATTGAAATCTCTTATGACATTCCATCTTTG-TGGTTGCTCGAGATTGGAGATTTTC
1 CTTTTATAAATTGAAATCTCTTAAGACATTCGATC-TTGAAGGTTGCTCGAGATTGGAGATTTTC
* * * * *
6925286 CCAGAAGTTATGGACACCATGGGGGAACTGTATGACCTTGATTTAAGCGGAACGGCATTGAAGGA
65 CCAGAAGTCATGGACACCATGGAGGAACTGTATGAACTTGATTTAAGCGGAACAGCTTTGAAGGA
*
6925351 ATTACCATCCTCAATTGGCAATCTTATTGGTCTTAAGTATTTGAGAATGAAAAACTGTAAAAACC
130 ATTACCATCCTCAATTGACAATCTTATTGGTCTTAAGTATTTGAGAATGAAAAACTGTAAAAACC
* *
6925416 TTGTTTGCCTTCGTGACGG
195 TTGTTTGCCTTCCTGACAG
* *
6925435 TTTTTATAAATTGAAATCTCTTAAGACATTCAATCTTGAAGGTTGCTCGAGATTGGAGATTTTCC
1 CTTTTATAAATTGAAATCTCTTAAGACATTCGATCTTGAAGGTTGCTCGAGATTGGAGATTTTCC
* *
6925500 CAGAAGTCATGAACACCATGGAGGAACTGTATGAACTTGATTTAAGCGGAACGGCTTTGAAGGAA
66 CAGAAGTCATGGACACCATGGAGGAACTGTATGAACTTGATTTAAGCGGAACAGCTTTGAAGGAA
* * * * * * *
6925565 TTACCGTCCTCAATTGACAATCTTATTGGTCTTAAGGAATTGAGATTTAAAAACTGTGAAAACAT
131 TTACCATCCTCAATTGACAATCTTATTGGTCTTAAGTATTTGAGAATGAAAAACTGTAAAAACCT
*
6925630 TGTCTGCCTTCCTGACAG
196 TGTTTGCCTTCCTGACAG
*
6925648 CTTTTATAAATTTAAATCTCTT
1 CTTTTATAAATTGAAATCTCTT
6925670 TTATGTCTTA
Statistics
Matches: 1176, Mismatches: 117, Indels: 14
0.90 0.09 0.01
Matches are distributed among these distances:
212 4 0.00
213 1160 0.99
214 11 0.01
215 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.33
Consensus pattern (213 bp):
CTTTTATAAATTGAAATCTCTTAAGACATTCGATCTTGAAGGTTGCTCGAGATTGGAGATTTTCC
CAGAAGTCATGGACACCATGGAGGAACTGTATGAACTTGATTTAAGCGGAACAGCTTTGAAGGAA
TTACCATCCTCAATTGACAATCTTATTGGTCTTAAGTATTTGAGAATGAAAAACTGTAAAAACCT
TGTTTGCCTTCCTGACAG
Found at i:6928186 original size:40 final size:40
Alignment explanation
Indices: 6928142--6928222 Score: 135
Period size: 40 Copynumber: 2.0 Consensus size: 40
6928132 AAATGCATGG
* *
6928142 TGCCTTTTTGGTTAGAAGTTAGAACTTGTATATTTTAGTT
1 TGCCTCTTTGGTTAGAAGTTAGAACTTGGATATTTTAGTT
*
6928182 TGCCTCTTTGGTTAGAAGTTAGAACTTGGATGTTTTAGTT
1 TGCCTCTTTGGTTAGAAGTTAGAACTTGGATATTTTAGTT
6928222 T
1 T
6928223 TCTTTTTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.21, C:0.09, G:0.22, T:0.48
Consensus pattern (40 bp):
TGCCTCTTTGGTTAGAAGTTAGAACTTGGATATTTTAGTT
Found at i:6930395 original size:15 final size:16
Alignment explanation
Indices: 6930375--6930409 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
6930365 TTTGAACTCG
*
6930375 AATTA-TTTTTATTCA
1 AATTATTTTTTATGCA
6930390 AATTATTTTTTATGCA
1 AATTATTTTTTATGCA
6930406 AATT
1 AATT
6930410 TTAAAGTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (16 bp):
AATTATTTTTTATGCA
Found at i:6930780 original size:16 final size:16
Alignment explanation
Indices: 6930759--6930829 Score: 83
Period size: 16 Copynumber: 4.4 Consensus size: 16
6930749 TGAATTACTG
6930759 ATTACAACTCTATTCC
1 ATTACAACTCTATTCC
*
6930775 ATTACAACTCTATTCT
1 ATTACAACTCTATTCC
* *
6930791 ATTAC-AGTCCTATTCA
1 ATTACAACT-CTATTCC
6930807 ATTACAAC-CTTATTCC
1 ATTACAACTC-TATTCC
6930823 ATTACAA
1 ATTACAA
6930830 TGAACCAAAC
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
15 3 0.06
16 43 0.91
17 1 0.02
ACGTcount: A:0.34, C:0.27, G:0.01, T:0.38
Consensus pattern (16 bp):
ATTACAACTCTATTCC
Found at i:6939122 original size:83 final size:89
Alignment explanation
Indices: 6938975--6939150 Score: 256
Period size: 83 Copynumber: 2.0 Consensus size: 89
6938965 CAAATTTAGG
6938975 TTATTTTTAGGTTATCTACTTCAGTGGTTAAGTGTTATAAGTATACCTTTGTCAAAGTTCTATGT
1 TTATTTTTAGGTTATCTACTTCA--GGTTAAGTGTTATAAGTATA-CTTTGTCAAAGTTCTATGT
6939040 TCGAATTCTTGCATGGGTATGAATTTT
63 TCGAATTCTTGCATGGGTATGAATTTT
* * *
6939067 TTATTTTTAGGTTATCTACTTC-GGTTAAGTG-T-T-A-TAT-GTTTGTTAAGGTTCTATGTTCG
1 TTATTTTTAGGTTATCTACTTCAGGTTAAGTGTTATAAGTATACTTTGTCAAAGTTCTATGTTCG
6939126 AATTCTTGCATGGGTATGAATTTT
66 AATTCTTGCATGGGTATGAATTTT
6939150 T
1 T
6939151 GCGCAGTGGA
Statistics
Matches: 81, Mismatches: 3, Indels: 9
0.87 0.03 0.10
Matches are distributed among these distances:
83 44 0.54
85 3 0.04
86 1 0.01
87 1 0.01
88 1 0.01
89 9 0.11
92 22 0.27
ACGTcount: A:0.22, C:0.10, G:0.19, T:0.49
Consensus pattern (89 bp):
TTATTTTTAGGTTATCTACTTCAGGTTAAGTGTTATAAGTATACTTTGTCAAAGTTCTATGTTCG
AATTCTTGCATGGGTATGAATTTT
Found at i:6939123 original size:17 final size:18
Alignment explanation
Indices: 6939090--6939123 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
6939080 ATCTACTTCG
6939090 GTTAAGTGTTATATGTTT
1 GTTAAGTGTTATATGTTT
*
6939108 GTTAAG-GTTCTATGTT
1 GTTAAGTGTTATATGTT
6939124 CGAATTCTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.21, C:0.03, G:0.24, T:0.53
Consensus pattern (18 bp):
GTTAAGTGTTATATGTTT
Found at i:6941509 original size:32 final size:32
Alignment explanation
Indices: 6941468--6941532 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
6941458 GGAAAATTCT
6941468 TAGAGAAGCTATTAGTGAATACTGTGCAACGC
1 TAGAGAAGCTATTAGTGAATACTGTGCAACGC
6941500 TAGAGAAGCTATTAGTGAATACTGTGCAACGC
1 TAGAGAAGCTATTAGTGAATACTGTGCAACGC
6941532 T
1 T
6941533 TCTACTTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (32 bp):
TAGAGAAGCTATTAGTGAATACTGTGCAACGC
Found at i:6942150 original size:16 final size:16
Alignment explanation
Indices: 6942129--6942160 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
6942119 TTAGTTGATT
6942129 TAGATCAGAATAGATA
1 TAGATCAGAATAGATA
6942145 TAGATCAGAATAGATA
1 TAGATCAGAATAGATA
6942161 GTTCCTTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.06, G:0.19, T:0.25
Consensus pattern (16 bp):
TAGATCAGAATAGATA
Found at i:6944508 original size:30 final size:30
Alignment explanation
Indices: 6944474--6944537 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
6944464 ATAATAAAAT
*
6944474 AATAATAAATATCTTATTAAAT-ATTAATAA
1 AATAATAAATATCTAATTAAATAATT-ATAA
** *
6944504 AATAATATTTTTCTAATTAAATAATTATAA
1 AATAATAAATATCTAATTAAATAATTATAA
6944534 AATA
1 AATA
6944538 TCATCAACAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 26 0.90
31 3 0.10
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (30 bp):
AATAATAAATATCTAATTAAATAATTATAA
Found at i:6950304 original size:14 final size:14
Alignment explanation
Indices: 6950282--6950320 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
6950272 AAAAAATAAT
* *
6950282 ATAAAATGAAAATA
1 ATAATATGAAAAAA
6950296 ATAATATGAAAAAA
1 ATAATATGAAAAAA
6950310 ATAATATGAAA
1 ATAATATGAAA
6950321 TGAATTGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (14 bp):
ATAATATGAAAAAA
Found at i:6950342 original size:21 final size:23
Alignment explanation
Indices: 6950302--6950345 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
6950292 AATAATAATA
6950302 TGAAAAAAATAATATGAAATGAAT
1 TGAAAAAAATAATA-GAAATGAAT
6950326 TGAAAAAAA-AATA-AAATGAA
1 TGAAAAAAATAATAGAAATGAA
6950346 ATAATTGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 7 0.35
23 4 0.20
24 9 0.45
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.20
Consensus pattern (23 bp):
TGAAAAAAATAATAGAAATGAAT
Found at i:6950365 original size:25 final size:26
Alignment explanation
Indices: 6950304--6950355 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6950294 TAATAATATG
*
6950304 AAAAAAATAATATGAAATGAATTGAA
1 AAAAAAATAAAATGAAATGAATTGAA
6950330 AAAAAAATAAAATGAAAT-AATTGAA
1 AAAAAAATAAAATGAAATGAATTGAA
6950355 A
1 A
6950356 TTAAATTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.69, C:0.00, G:0.10, T:0.21
Consensus pattern (26 bp):
AAAAAAATAAAATGAAATGAATTGAA
Found at i:6950486 original size:18 final size:19
Alignment explanation
Indices: 6950446--6950486 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
6950436 TTGGCCGACC
* *
6950446 ATTTCATACTTTTTTTTTC
1 ATTTCATACTTTTTTTCTA
6950465 ATTTCATA-TTTTTTTCTA
1 ATTTCATACTTTTTTTCTA
6950483 ATTT
1 ATTT
6950487 TGCCCTTGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.20, C:0.12, G:0.00, T:0.68
Consensus pattern (19 bp):
ATTTCATACTTTTTTTCTA
Found at i:6955062 original size:241 final size:240
Alignment explanation
Indices: 6954616--6955337 Score: 1354
Period size: 241 Copynumber: 3.0 Consensus size: 240
6954606 GGAAGAAGAG
6954616 TAATGGGAAGAGTAGTGGGAAGTGACAGTAAAGATGAGTGAGAGAAGAAGAGTTACTGTTGCAGT
1 TAATGGGAAGAGTAGTGGGAAGTGACAGTAAAGATGAGTGAGAGAAGAAGAGTTACTGTTGCAGT
*
6954681 TATAGAAAATGGGTTTTCATAGTAGCGTTAAAAATGTTTGTTCAAATAGGAAGCAAAGAAAGAGA
66 TATAGAAAATGGGTTTTCATAGTAGCGTTAAAAATGTTTGTTCAAATAGGAAGCATAGAAAGAGA
6954746 TGTATAATTATTTTGGATGTGGATTGTCATTGAATTTGAATTTTTTTATCAAATTATCCTAAAAT
131 TGTATAATTATTTTGGATGTGGATTGTCATTGAATTTGAA-TTTTTTATCAAATTATCCTAAAAT
6954811 GGATAAAAAAATTAATGTTTGTCAACTATGCTGACGTAGCATCTAC
195 GGATAAAAAAATTAATGTTTGTCAACTATGCTGACGTAGCATCTAC
6954857 TAATGGGAAGAGTAGTGGGAAGTGACAGTAAAGATGAGTGAGAGAAGAAGAGTTACTGTTGCAGT
1 TAATGGGAAGAGTAGTGGGAAGTGACAGTAAAGATGAGTGAGAGAAGAAGAGTTACTGTTGCAGT
*
6954922 TATAGAAAATGGGTTTTCATAGTAGCGTTAAAAATGTTTGTTCAAATAGGAAGTATAGAAAGAGA
66 TATAGAAAATGGGTTTTCATAGTAGCGTTAAAAATGTTTGTTCAAATAGGAAGCATAGAAAGAGA
* * * *
6954987 TGTATAATTATTTTGGATGTGGATGGTCAATAAATTTGAATTTTTTATTAAATTATCCTAAAATG
131 TGTATAATTATTTTGGATGTGGATTGTCATTGAATTTGAATTTTTTATCAAATTATCCTAAAATG
*
6955052 GATAAAAAAAATTAATGTTTGTCAACTATGCTGACATAGCATCTAC
196 GAT-AAAAAAATTAATGTTTGTCAACTATGCTGACGTAGCATCTAC
*
6955098 TAATGGGAAGAGTAGTGGGAAGTGACAGTAAAGATGAGTGAGAGAAGAAGAGTTACTATTGCAGT
1 TAATGGGAAGAGTAGTGGGAAGTGACAGTAAAGATGAGTGAGAGAAGAAGAGTTACTGTTGCAGT
6955163 TATAGAAAATGGGTTTTCATAGTAGCGTTAAAAATGTTTGTTCAAATAGGAAGCATAGAAAGAGA
66 TATAGAAAATGGGTTTTCATAGTAGCGTTAAAAATGTTTGTTCAAATAGGAAGCATAGAAAGAGA
6955228 TGTATAATTATTTTGGATGTGGATTGTCATTGAATTTGAATTTTTTATCAAATTATCCTAAAATG
131 TGTATAATTATTTTGGATGTGGATTGTCATTGAATTTGAATTTTTTATCAAATTATCCTAAAATG
6955293 GATAAAAAAATTAATGTTTGTCAACTATGCTGACGTAGCATCTAC
196 GATAAAAAAATTAATGTTTGTCAACTATGCTGACGTAGCATCTAC
6955338 ATGGATTATA
Statistics
Matches: 466, Mismatches: 14, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
240 68 0.15
241 398 0.85
ACGTcount: A:0.37, C:0.07, G:0.23, T:0.32
Consensus pattern (240 bp):
TAATGGGAAGAGTAGTGGGAAGTGACAGTAAAGATGAGTGAGAGAAGAAGAGTTACTGTTGCAGT
TATAGAAAATGGGTTTTCATAGTAGCGTTAAAAATGTTTGTTCAAATAGGAAGCATAGAAAGAGA
TGTATAATTATTTTGGATGTGGATTGTCATTGAATTTGAATTTTTTATCAAATTATCCTAAAATG
GATAAAAAAATTAATGTTTGTCAACTATGCTGACGTAGCATCTAC
Found at i:6955401 original size:10 final size:10
Alignment explanation
Indices: 6955368--6955420 Score: 56
Period size: 9 Copynumber: 5.3 Consensus size: 10
6955358 CATGTCAATA
*
6955368 TTTAATTAAT
1 TTTAAATAAT
*
6955378 TCTAATATATAT
1 TTTAA-ATA-AT
6955390 TTTAAATAAT
1 TTTAAATAAT
6955400 TTT-AATAAT
1 TTTAAATAAT
6955409 TTTAAA-AAT
1 TTTAAATAAT
6955418 TTT
1 TTT
6955421 TATTATATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
9 15 0.41
10 11 0.30
11 5 0.14
12 6 0.16
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (10 bp):
TTTAAATAAT
Found at i:6956483 original size:16 final size:16
Alignment explanation
Indices: 6956459--6956490 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
6956449 AATTAAGCTT
6956459 TTAACTTTATTTTTAA
1 TTAACTTTATTTTTAA
*
6956475 TTAATTTTATTTTTAA
1 TTAACTTTATTTTTAA
6956491 ATATCTTTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (16 bp):
TTAACTTTATTTTTAA
Found at i:6956527 original size:20 final size:20
Alignment explanation
Indices: 6956504--6956544 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
6956494 TCTTTTGAAA
6956504 TAAAAAAA-TGATATAAAATT
1 TAAAAAAATTG-TATAAAATT
6956524 TAAAAAAATTGTATAAAATT
1 TAAAAAAATTGTATAAAATT
6956544 T
1 T
6956545 TTTTCCTTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 18 0.90
21 2 0.10
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (20 bp):
TAAAAAAATTGTATAAAATT
Found at i:6962371 original size:30 final size:30
Alignment explanation
Indices: 6962335--6962393 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
6962325 TCCTGAGCCA
6962335 AGGGGTAAAA-GTGTAATTATGCAAAAGTTT
1 AGGGGTAAAATG-GTAATTATGCAAAAGTTT
* *
6962365 AGGGGTAAAATGGTAATTTTGCCAAAGTT
1 AGGGGTAAAATGGTAATTATGCAAAAGTT
6962394 CGTATTAAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.37, C:0.05, G:0.27, T:0.31
Consensus pattern (30 bp):
AGGGGTAAAATGGTAATTATGCAAAAGTTT
Found at i:6962861 original size:47 final size:47
Alignment explanation
Indices: 6962807--6962983 Score: 193
Period size: 47 Copynumber: 3.8 Consensus size: 47
6962797 TGGTTGAACA
* *
6962807 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAACG
* * * * *
6962854 TCTGAACTCGTTGAGTTCAGTCCGAGTTC-GTGA--GATGT-AACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA--A--CG
*
6962901 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-AACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAACG
* *
6962947 TCCGAGCTCGTTGAGTTGAATCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
6962984 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 15, Indels: 17
0.77 0.11 0.12
Matches are distributed among these distances:
43 2 0.02
44 5 0.05
45 1 0.01
46 38 0.36
47 53 0.50
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAACG
Found at i:6969942 original size:30 final size:30
Alignment explanation
Indices: 6969902--6969961 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
6969892 TTCCCGAGCC
*
6969902 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGACAAAATG-GTAATTATGCAAAAGTT
* *
6969932 TAGGGACAAAATGGTAATTTTGCCAAAGTT
1 TAGGGACAAAATGGTAATTATGCAAAAGTT
6969962 CGTATTAAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGACAAAATGGTAATTATGCAAAAGTT
Found at i:6970435 original size:47 final size:48
Alignment explanation
Indices: 6970383--6970514 Score: 157
Period size: 47 Copynumber: 2.8 Consensus size: 48
6970373 ATGGTTGAAC
*
6970383 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-ATG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGT-AACAGG
* *
6970431 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAC-AGG
* *
6970476 CATCCGAACTCCTTGAGTTGATTCCGAGTTCACTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
6970515 GCGGGTTACA
Statistics
Matches: 70, Mismatches: 7, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
43 2 0.03
44 5 0.07
45 2 0.03
46 2 0.03
47 56 0.80
48 2 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (48 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAACAGG
Done.