Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 231 of 322
Found at i:76742664 original size:98 final size:97
Alignment explanation
Indices: 76742450--76742716 Score: 269
Period size: 98 Copynumber: 2.8 Consensus size: 97
76742440 GTATGTGAGC
* * * * * *
76742450 CAGTGTAAGACATGTCTGGGACAT-GCATCGGCATTG--AGACGAGAGCTAGTGTAAGGCATGTC
1 CAGTGTAAGACATGTCTGGGACATGGCATCGACATTGATAGATGAGAGCCAGTGTAAGACCTATC
**
76742512 TGGGACAT-GCATCAGCCTCGGGATATACAAG
66 TGGGACATGGCATCAGCCTCAAGATATACAAG
* * *
76742543 CTAGTGTAAGACCTATCTGGGACATGGCATCGACATCGATAGATGAGAGCCAGTGTAAGACCTAT
1 C-AGTGTAAGACATGTCTGGGACATGGCATCGACATTGATAGATGAGAGCCAGTGTAAGACCTAT
*
76742608 CTGGGACATGGCATCAGCCTCAATATATGA-AAG
65 CTGGGACATGGCATCAGCCTCAAGATAT-ACAAG
* * * * * * **
76742641 TCAGTGTAAGACTTGTCTAGGACACGACATCGACTTTAAT-G-TGCTAGCCAGTGTAAGACCATA
1 -CAGTGTAAGACATGTCTGGGACATGGCATCGACATTGATAGATGAGAGCCAGTGTAAGACC-TA
76742704 TCTGGGACATGGC
64 TCTGGGACATGGC
76742717 GTCGCCATTT
Statistics
Matches: 144, Mismatches: 22, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
93 1 0.01
94 21 0.15
95 10 0.07
96 17 0.12
97 45 0.31
98 48 0.33
99 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.23
Consensus pattern (97 bp):
CAGTGTAAGACATGTCTGGGACATGGCATCGACATTGATAGATGAGAGCCAGTGTAAGACCTATC
TGGGACATGGCATCAGCCTCAAGATATACAAG
Found at i:76743744 original size:26 final size:27
Alignment explanation
Indices: 76743708--76743761 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
76743698 TCAAGGTTTA
*
76743708 TAGACACGGGCTA-GGACACGGGCGTG
1 TAGACACGGGCCATGGACACGGGCGTG
76743734 TAGACACGGGCCATGGACACGGGCGTG
1 TAGACACGGGCCATGGACACGGGCGTG
76743761 T
1 T
76743762 GTCAGGCTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 12 0.46
27 14 0.54
ACGTcount: A:0.22, C:0.24, G:0.41, T:0.13
Consensus pattern (27 bp):
TAGACACGGGCCATGGACACGGGCGTG
Found at i:76743933 original size:20 final size:21
Alignment explanation
Indices: 76743894--76743933 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
76743884 GTCATAATGG
*
76743894 CCACACGGGCGTGTTGCCTTT
1 CCACACGGGCATGTTGCCTTT
76743915 CCACACGGGCATG-TGCCTT
1 CCACACGGGCATGTTGCCTT
76743934 ATTTCAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.12, C:0.35, G:0.28, T:0.25
Consensus pattern (21 bp):
CCACACGGGCATGTTGCCTTT
Found at i:76751360 original size:15 final size:14
Alignment explanation
Indices: 76751340--76751378 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
76751330 ACAACCCAAC
76751340 CAGAACAAGATAGAG
1 CAGAACAA-ATAGAG
*
76751355 CAGAACATAATATAG
1 CAGAACA-AATAGAG
76751370 CAGAACAAA
1 CAGAACAAA
76751379 GCAAAGTAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 2 0.09
15 19 0.86
16 1 0.05
ACGTcount: A:0.56, C:0.15, G:0.18, T:0.10
Consensus pattern (14 bp):
CAGAACAAATAGAG
Found at i:76772722 original size:33 final size:33
Alignment explanation
Indices: 76772679--76772756 Score: 95
Period size: 33 Copynumber: 2.4 Consensus size: 33
76772669 AGCTAATGTG
* * *
76772679 CTTGATTTCCAACAGTAGATA-TAATGGTAAACT
1 CTTGATTTCCAACAGTAAATACT-ATAGCAAACT
* *
76772712 GTTGATTTCCAATAGTAAATACTATAGCAAACT
1 CTTGATTTCCAACAGTAAATACTATAGCAAACT
76772745 CTTGATTTCCAA
1 CTTGATTTCCAA
76772757 AAGGAAACAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
33 37 0.97
34 1 0.03
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.35
Consensus pattern (33 bp):
CTTGATTTCCAACAGTAAATACTATAGCAAACT
Found at i:76774158 original size:8 final size:8
Alignment explanation
Indices: 76774142--76774203 Score: 63
Period size: 8 Copynumber: 7.6 Consensus size: 8
76774132 AACCCAATTT
76774142 TTATTTTA
1 TTATTTTA
*
76774150 TTGTTTTA
1 TTATTTTA
76774158 TTATTTTA
1 TTATTTTA
*
76774166 TTACTTTATT
1 TTA-TTT-TA
76774176 TTATTTTA
1 TTATTTTA
*
76774184 TTA-ATTA
1 TTATTTTA
*
76774191 TTACTTTA
1 TTATTTTA
76774199 TTATT
1 TTATT
76774204 ATTTTTTGGA
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
7 6 0.14
8 28 0.64
9 6 0.14
10 4 0.09
ACGTcount: A:0.24, C:0.03, G:0.02, T:0.71
Consensus pattern (8 bp):
TTATTTTA
Found at i:76774195 original size:25 final size:27
Alignment explanation
Indices: 76774147--76774208 Score: 92
Period size: 26 Copynumber: 2.4 Consensus size: 27
76774137 AATTTTTATT
* *
76774147 TTATTGTTTTATTATTTTATTACTTTA
1 TTATTATTTTATTATATTATTACTTTA
76774174 TT-TTATTTTATTA-ATTATTACTTTA
1 TTATTATTTTATTATATTATTACTTTA
76774199 TTATTATTTT
1 TTATTATTTT
76774209 TTGGATAGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
25 13 0.41
26 17 0.53
27 2 0.06
ACGTcount: A:0.24, C:0.03, G:0.02, T:0.71
Consensus pattern (27 bp):
TTATTATTTTATTATATTATTACTTTA
Found at i:76775386 original size:24 final size:22
Alignment explanation
Indices: 76775359--76775411 Score: 72
Period size: 23 Copynumber: 2.4 Consensus size: 22
76775349 ATATGTTCTT
*
76775359 AAGAAAAATATAAAAAAAAGAAA
1 AAGAAAAACA-AAAAAAAAGAAA
76775382 GAAGAAAAACAAAAAAAAAGAAA
1 -AAGAAAAACAAAAAAAAAGAAA
76775405 AA-AAAAA
1 AAGAAAAA
76775412 GAGATGTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 5 0.18
22 2 0.07
23 12 0.43
24 9 0.32
ACGTcount: A:0.85, C:0.02, G:0.09, T:0.04
Consensus pattern (22 bp):
AAGAAAAACAAAAAAAAAGAAA
Found at i:76775401 original size:19 final size:19
Alignment explanation
Indices: 76775372--76775408 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
76775362 AAAAATATAA
76775372 AAAAAAGAAAGAAGAAAAAC
1 AAAAAAGAAAGAA-AAAAAC
76775392 AAAAAA-AAAGAAAAAAA
1 AAAAAAGAAAGAAAAAAA
76775409 AAAGAGATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 6 0.35
20 6 0.35
ACGTcount: A:0.86, C:0.03, G:0.11, T:0.00
Consensus pattern (19 bp):
AAAAAAGAAAGAAAAAAAC
Found at i:76775402 original size:16 final size:15
Alignment explanation
Indices: 76775370--76775411 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
76775360 AGAAAAATAT
*
76775370 AAAAAAAAGAAAGAAG
1 AAAAAAAA-AAAAAAG
76775386 AAAAACAAAAAAAAAG
1 AAAAA-AAAAAAAAAG
76775402 AAAAAAAAAA
1 AAAAAAAAAA
76775412 GAGATGTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 5 0.21
16 16 0.67
17 3 0.12
ACGTcount: A:0.88, C:0.02, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAAAAG
Found at i:76778112 original size:26 final size:25
Alignment explanation
Indices: 76778071--76778120 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
76778061 GGGCTTTATT
*
76778071 GTGTATACAATAAATATATTAATGG
1 GTGTATACAATAAATATATAAATGG
76778096 GTGT-TACATATATAATATATAAATG
1 GTGTATACA-ATA-AATATATAAATG
76778121 ATGGAGTTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 4 0.18
25 7 0.32
26 11 0.50
ACGTcount: A:0.44, C:0.04, G:0.14, T:0.38
Consensus pattern (25 bp):
GTGTATACAATAAATATATAAATGG
Found at i:76778174 original size:32 final size:30
Alignment explanation
Indices: 76778103--76778177 Score: 91
Period size: 32 Copynumber: 2.5 Consensus size: 30
76778093 TGGGTGTTAC
* *
76778103 ATATATA-ATATATAAATGATGGAGTTGGT
1 ATATATACATATATAAAAGATGGAGTTGAT
*
76778132 A-ATATACATATATAAAAGAGTGGGGTTGTAT
1 ATATATACATATATAAAAGA-TGGAGTTG-AT
76778163 ATATATACATATATA
1 ATATATACATATATA
76778178 TAGGTGGGTG
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
28 5 0.13
29 12 0.31
30 7 0.18
31 2 0.05
32 13 0.33
ACGTcount: A:0.44, C:0.03, G:0.17, T:0.36
Consensus pattern (30 bp):
ATATATACATATATAAAAGATGGAGTTGAT
Found at i:76778199 original size:32 final size:31
Alignment explanation
Indices: 76778133--76778209 Score: 86
Period size: 32 Copynumber: 2.5 Consensus size: 31
76778123 GGAGTTGGTA
* * *
76778133 ATATACATATATAAAAGAGTGGGGTTGTATAT
1 ATATACATATAT-ATAGAGTGGGGTTATACAT
76778165 ATATACATATATATAG-GTGGGTGATTATACAT
1 ATATACATATATATAGAGTGGG-G-TTATACAT
76778197 ATATA-ATATATAT
1 ATATACATATATAT
76778210 GCATGGCTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
30 5 0.12
31 12 0.30
32 23 0.57
ACGTcount: A:0.42, C:0.04, G:0.17, T:0.38
Consensus pattern (31 bp):
ATATACATATATATAGAGTGGGGTTATACAT
Found at i:76778667 original size:17 final size:17
Alignment explanation
Indices: 76778647--76778697 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 17
76778637 ATATTCTATT
*
76778647 GTGAACTATGTTAATTG
1 GTGAACTATATTAATTG
* *
76778664 GTGAATTATATTATTATG
1 GTGAACTATATTAAT-TG
*
76778682 GCGAACTATATTAATT
1 GTGAACTATATTAATT
76778698 TTCCAAATTA
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
17 13 0.48
18 14 0.52
ACGTcount: A:0.33, C:0.06, G:0.18, T:0.43
Consensus pattern (17 bp):
GTGAACTATATTAATTG
Found at i:76781471 original size:42 final size:42
Alignment explanation
Indices: 76781412--76781496 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
76781402 AATGGAGGAA
*
76781412 TGGTTCACAATAGAGGAAAATACTTTATTGTAGTCAATTCCT
1 TGGTTCACAACAGAGGAAAATACTTTATTGTAGTCAATTCCT
76781454 TGGTTCACAACAGAGGAAAATACTTTATTGTAGTCAATTCCT
1 TGGTTCACAACAGAGGAAAATACTTTATTGTAGTCAATTCCT
76781496 T
1 T
76781497 CCTTTTGAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.35
Consensus pattern (42 bp):
TGGTTCACAACAGAGGAAAATACTTTATTGTAGTCAATTCCT
Found at i:76784071 original size:14 final size:15
Alignment explanation
Indices: 76784037--76784079 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
76784027 TTTTAAAATT
76784037 TTCTTCTTTTTTTTAA
1 TTCTT-TTTTTTTTAA
76784053 TTCTTTCTTTTTTT-A
1 TTCTTT-TTTTTTTAA
76784068 -TCTTTTTTTTTT
1 TTCTTTTTTTTTT
76784080 CAAAAGAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
13 7 0.27
14 5 0.19
15 2 0.08
16 12 0.46
ACGTcount: A:0.07, C:0.12, G:0.00, T:0.81
Consensus pattern (15 bp):
TTCTTTTTTTTTTAA
Found at i:76787285 original size:17 final size:18
Alignment explanation
Indices: 76787252--76787285 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
76787242 GAAGGAACAT
76787252 AAATAAATAAAAAAGGGA
1 AAATAAATAAAAAAGGGA
*
76787270 AAATAAA-AAAATAGGG
1 AAATAAATAAAAAAGGG
76787286 TTTTTTATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.71, C:0.00, G:0.18, T:0.12
Consensus pattern (18 bp):
AAATAAATAAAAAAGGGA
Found at i:76802917 original size:20 final size:21
Alignment explanation
Indices: 76802868--76802917 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
76802858 AGCAAAACTG
76802868 AGAAAT-AAAATTTGGAGAAA
1 AGAAATAAAAATTTGGAGAAA
* * *
76802888 AGAGAGAAAAATTTTGA-AAA
1 AGAAATAAAAATTTGGAGAAA
76802908 AGAAATAAAA
1 AGAAATAAAA
76802918 TAATAAAAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
20 15 0.62
21 9 0.38
ACGTcount: A:0.64, C:0.00, G:0.18, T:0.18
Consensus pattern (21 bp):
AGAAATAAAAATTTGGAGAAA
Found at i:76807596 original size:42 final size:41
Alignment explanation
Indices: 76807484--76807642 Score: 153
Period size: 43 Copynumber: 3.8 Consensus size: 41
76807474 AGGATTCCGA
* * *
76807484 TATTTGATTTCG-G-AATACTAGGTCTGGGACATTGGCATCG
1 TATTTGATTTCGTGTAAGACCATGTCTGGGACA-TGGCATCG
76807524 -ATTTGAGATTTACGTGTAAGACCATGTCTGGGACATCGGCATCG
1 TATTT--GATTT-CGTGTAAGACCATGTCTGGGACAT-GGCATCG
* * *
76807568 TATTTGATTTCGTGTAAGACCCTATCTGGGACAGTGGCATCAA
1 TATTTGATTTCGTGTAAGACCATGTCTGGGACA-TGGCATC-G
* * *
76807611 TATTGGATTACATGTAAGACCATGTCTGGGAC
1 TATTTGATTTCGTGTAAGACCATGTCTGGGAC
76807643 GTTGGCATTG
Statistics
Matches: 99, Mismatches: 11, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
39 4 0.04
41 5 0.05
42 29 0.29
43 35 0.35
44 22 0.22
45 4 0.04
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (41 bp):
TATTTGATTTCGTGTAAGACCATGTCTGGGACATGGCATCG
Found at i:76807640 original size:43 final size:42
Alignment explanation
Indices: 76807505--76807650 Score: 154
Period size: 43 Copynumber: 3.4 Consensus size: 42
76807495 GGAATACTAG
*
76807505 GTCTGGGACATTGGCATCGAT-TTGAGATTTACGTGTAAGACCAT
1 GTCTGGGACAGTGGCATC-ATATTG-GA-TTACGTGTAAGACCAT
* * * *
76807549 GTCTGGGACA-TCGGCATCGTATTTGATTTCGTGTAAGACCCT
1 GTCTGGGACAGT-GGCATCATATTGGATTACGTGTAAGACCAT
* *
76807591 ATCTGGGACAGTGGCATCAATATTGGATTACATGTAAGACCAT
1 GTCTGGGACAGTGGCATC-ATATTGGATTACGTGTAAGACCAT
76807634 GTCTGGGAC-GTTGGCAT
1 GTCTGGGACAG-TGGCAT
76807651 TGTACGAGCT
Statistics
Matches: 86, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
42 30 0.35
43 38 0.44
44 18 0.21
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (42 bp):
GTCTGGGACAGTGGCATCATATTGGATTACGTGTAAGACCAT
Found at i:76815201 original size:42 final size:42
Alignment explanation
Indices: 76815082--76815245 Score: 118
Period size: 43 Copynumber: 3.8 Consensus size: 42
76815072 TAGGATTTTG
** **
76815082 ATATTTGATTTCGTGTAAGACCACGTCTGGGACATTGGCATC
1 ATATTTGATTTCGTGTAAGACCTTGTCTGGGACATCAGCATC
* * * *
76815124 A-ATTTGAAATTTACGTATAATA-CTATGTCTAGGACATCAGTATC
1 ATATTTG--ATTT-CGTGTAAGACCT-TGTCTGGGACATCAGCATC
*
76815168 ATATTTGATTTCGTGTAAGACCTTGTCTGGGACAGT-GGCATC
1 ATATTTGATTTCGTGTAAGACCTTGTCTGGGACA-TCAGCATC
* * * * * *
76815210 GATATTGGATTACATGTAAGTCCATGTTTGGGACAT
1 -ATATTTGATTTCGTGTAAGACCTTGTCTGGGACAT
76815246 TGGCATTGTA
Statistics
Matches: 95, Mismatches: 19, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
41 5 0.05
42 23 0.24
43 40 0.42
44 22 0.23
45 5 0.05
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.35
Consensus pattern (42 bp):
ATATTTGATTTCGTGTAAGACCTTGTCTGGGACATCAGCATC
Found at i:76826935 original size:45 final size:45
Alignment explanation
Indices: 76826837--76827009 Score: 174
Period size: 45 Copynumber: 3.9 Consensus size: 45
76826827 TTTTCTCAAA
* * * * * *
76826837 TCACCGGCATT-TCGCCTACTAGGATC-GAGGCCCGATTA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
* *
76826880 TCATCGGCATTATAGCCTGCTAGGCTCGAAA-GCCCAAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATC
* *
76826925 TCACCGGCATTATAGCCTGCTAGGCCCAAAGGCCCGAATAGTGTC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * * *
76826970 TCATCGACATAATAGCCTACTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
76827010 TAATACAAGC
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
43 10 0.09
44 15 0.14
45 81 0.75
46 2 0.02
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:76827059 original size:38 final size:38
Alignment explanation
Indices: 76827002--76827085 Score: 105
Period size: 38 Copynumber: 2.2 Consensus size: 38
76826992 GGCTCAAAGG
* * * * *
76827002 CCCGAATATAATACAAGCACTAGGCCTGCGGGATTTAA
1 CCCGGATATAATACAAGCACGAAGCCTACGGGAATTAA
*
76827040 CCCGGATATAATACTAGCACGAAGCCTACGGGAATTAA
1 CCCGGATATAATACAAGCACGAAGCCTACGGGAATTAA
*
76827078 GCCGGATA
1 CCCGGATA
76827086 CAAATATCAT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.35, C:0.24, G:0.23, T:0.19
Consensus pattern (38 bp):
CCCGGATATAATACAAGCACGAAGCCTACGGGAATTAA
Found at i:76827273 original size:38 final size:38
Alignment explanation
Indices: 76827180--76827292 Score: 140
Period size: 38 Copynumber: 3.0 Consensus size: 38
76827170 TATGCATAAC
* *
76827180 ATTACCAGCACGAAGCCTGCAGGAATTAACCCGGATAT
1 ATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
76827218 ATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
1 ATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
* ** *
76827256 AATT-CCAGCA-TATAGCCTGCGGTCTTTAAGCCGGATA
1 -ATTACCAGCACGA-AGCCTGCGGGATTTAACCCGGATA
76827293 CAAATATCAT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.01
38 63 0.94
39 3 0.04
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (38 bp):
ATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
Found at i:76827380 original size:207 final size:207
Alignment explanation
Indices: 76827002--76827389 Score: 652
Period size: 207 Copynumber: 1.9 Consensus size: 207
76826992 GGCTCAAAGG
* * *
76827002 CCCGAATATAATACAAGCACTAGGCCTGCGGGATTTAACCCGGATATAATACTAGCACGAAGCCT
1 CCCGAATATAATACAAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCT
76827067 ACGGGAATTAAGCCGGATACAAATATCATGCATATTTAATCATATATTAACACATTTCAACACTT
66 ACGGGAATTAAGCCGGATACAAATATCATGCATATTTAATCATATATTAACACATTTCAACACTT
76827132 TTCTTTCATCTCATTTTCACACTTAGCATTTGATAGCTTATGCATAACATTACCAGCACGAAGCC
131 TTCTTTCATCTCATTTTCACACTTAGCATTTGATAGCTTATGCATAACATTACCAGCACGAAGCC
76827197 TGCAGGAATTAA
196 TGCAGGAATTAA
* * * * *
76827209 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATTCCAGCA-TATAGCC
1 CCCGAATATAATACAAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGA-AGCC
* ***
76827273 TGCGGTCTTTAAGCCGGATACAAATATCATGCATATTTAATCATATATTAACACATTTCAACACT
65 TACGGGAATTAAGCCGGATACAAATATCATGCATATTTAATCATATATTAACACATTTCAACACT
76827338 TTTCTTTCATCTCATTTTCACACTTAGCATTTGATAGCTTATGCATAACATT
130 TTTCTTTCATCTCATTTTCACACTTAGCATTTGATAGCTTATGCATAACATT
76827390 TTACTCACAT
Statistics
Matches: 168, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
206 1 0.01
207 167 0.99
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (207 bp):
CCCGAATATAATACAAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCT
ACGGGAATTAAGCCGGATACAAATATCATGCATATTTAATCATATATTAACACATTTCAACACTT
TTCTTTCATCTCATTTTCACACTTAGCATTTGATAGCTTATGCATAACATTACCAGCACGAAGCC
TGCAGGAATTAA
Found at i:76827669 original size:42 final size:42
Alignment explanation
Indices: 76827562--76827691 Score: 143
Period size: 42 Copynumber: 3.0 Consensus size: 42
76827552 ACATAACATT
* * **
76827562 TCATTTCACCGGCATTATAGCCTGCTAGGGTCAAAGGGTCGAA
1 TCATTTCACCGGCATTATAGCCTACTAGGCTCAAA-GCCCGAA
* * * *
76827605 TAATATTTCACCTGCATCATAGCCTACTAAGCTCAAAGCCCGAA
1 T--CATTTCACCGGCATTATAGCCTACTAGGCTCAAAGCCCGAA
* *
76827649 TCATTTCACCGGCATTATAGCCTACTAGGCCCGAAGCCCGAA
1 TCATTTCACCGGCATTATAGCCTACTAGGCTCAAAGCCCGAA
76827691 T
1 T
76827692 ATCACATTTC
Statistics
Matches: 71, Mismatches: 14, Indels: 5
0.79 0.16 0.06
Matches are distributed among these distances:
42 36 0.51
43 1 0.01
44 6 0.08
45 28 0.39
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (42 bp):
TCATTTCACCGGCATTATAGCCTACTAGGCTCAAAGCCCGAA
Found at i:76834453 original size:36 final size:35
Alignment explanation
Indices: 76834406--76834477 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 35
76834396 AAGACTCGTC
76834406 ATCCAATTGTTGGAAAGATGTGATCTCGTTCCTCA
1 ATCCAATTGTTGGAAAGATGTGATCTCGTTCCTCA
*
76834441 NATCCAATTGTTGGAAAGTTGTGATCTCGTTCCTCA
1 -ATCCAATTGTTGGAAAGATGTGATCTCGTTCCTCA
76834477 A
1 A
76834478 CTTAGCATTC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
35 1 0.03
36 34 0.97
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.35
Consensus pattern (35 bp):
ATCCAATTGTTGGAAAGATGTGATCTCGTTCCTCA
Found at i:76841706 original size:45 final size:44
Alignment explanation
Indices: 76841641--76841730 Score: 144
Period size: 45 Copynumber: 2.0 Consensus size: 44
76841631 TGTCAGACTT
* *
76841641 AATACTACTTATGATAATTGTTATCAATGAAGTAATAGGATGAC
1 AATACTACTTATGATAATTGTTAACAATGAAGTAATAGAATGAC
*
76841685 ANATACTACTTCTGATAATTGTTAACAATGAAGTAATAGAATGAC
1 A-ATACTACTTATGATAATTGTTAACAATGAAGTAATAGAATGAC
76841730 A
1 A
76841731 CTATGTGACC
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 1 0.02
45 41 0.98
ACGTcount: A:0.42, C:0.10, G:0.14, T:0.32
Consensus pattern (44 bp):
AATACTACTTATGATAATTGTTAACAATGAAGTAATAGAATGAC
Found at i:76845255 original size:11 final size:11
Alignment explanation
Indices: 76845239--76845279 Score: 82
Period size: 11 Copynumber: 3.7 Consensus size: 11
76845229 TTTCAAAAAA
76845239 AGTATCGATTT
1 AGTATCGATTT
76845250 AGTATCGATTT
1 AGTATCGATTT
76845261 AGTATCGATTT
1 AGTATCGATTT
76845272 AGTATCGA
1 AGTATCGA
76845280 CCCCTACTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (11 bp):
AGTATCGATTT
Found at i:76868668 original size:10 final size:10
Alignment explanation
Indices: 76868655--76868686 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
76868645 TTTTATCTCA
*
76868655 TTTACTTTAT
1 TTTATTTTAT
76868665 TTTATTTTAT
1 TTTATTTTAT
76868675 TTTATTTTAT
1 TTTATTTTAT
76868685 TT
1 TT
76868687 CTTTCTTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (10 bp):
TTTATTTTAT
Found at i:76868678 original size:15 final size:15
Alignment explanation
Indices: 76868655--76868686 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
76868645 TTTTATCTCA
76868655 TTTACTTTATTTTAT
1 TTTACTTTATTTTAT
*
76868670 TTTATTTTATTTTAT
1 TTTACTTTATTTTAT
76868685 TT
1 TT
76868687 CTTTCTTTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTACTTTATTTTAT
Found at i:76883832 original size:48 final size:48
Alignment explanation
Indices: 76883760--76884035 Score: 240
Period size: 48 Copynumber: 5.8 Consensus size: 48
76883750 TATGTGTGCT
* *
76883760 AGTGTAAGACCATGTTTG-GAACATGGCATCGGCAATGTTGTGAGAGCC
1 AGTGTAAGACCATGTTTGAG-ACATGGCATCGGCAATGATATGAGAGCC
* * * *
76883808 AGTGTAAGACCATATTTGAGACATGGCATCGGTATTGATATGTGA-CC
1 AGTGTAAGACCATGTTTGAGACATGGCATCGGCAATGATATGAGAGCC
* * * * * *
76883855 TAGTGTAAAACCATGTCT-AGGACATGACATCGGCGACGTTATGAGAGCC
1 -AGTGTAAGACCATGTTTGA-GACATGGCATCGGCAATGATATGAGAGCC
* * * * * * *
76883904 AGTGTAAGACCATGTCTGGGACATGGCATCTGCATTGAAACGAGAGCT
1 AGTGTAAGACCATGTTTGAGACATGGCATCGGCAATGATATGAGAGCC
* * * *
76883952 AGTGTAAGACAATGTTT-AGGACATGGCATCGGC-CTCGATATGTGAGCT
1 AGTGTAAGACCATGTTTGA-GACATGGCATCGGCAAT-GATATGAGAGCC
*
76884000 AGTGTAAGACCATGTTAG-GAACATGGCATCGGCAAT
1 AGTGTAAGACCATGTTTGAG-ACATGGCATCGGCAAT
76884036 TCACCCTCTT
Statistics
Matches: 180, Mismatches: 38, Indels: 19
0.76 0.16 0.08
Matches are distributed among these distances:
47 5 0.03
48 171 0.95
49 4 0.02
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGAGACATGGCATCGGCAATGATATGAGAGCC
Found at i:76883911 original size:96 final size:94
Alignment explanation
Indices: 76883747--76884033 Score: 322
Period size: 96 Copynumber: 3.0 Consensus size: 94
76883737 GACATTTGGG
* * * *
76883747 TGATATGTGTGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTGTGAGAGCCAGTG
1 TGATATGTGAGCTAGTGTAAGACCATGTTAGG-ACATGGCATCGGCAACGTTATGAGAGCCAGTG
* *
76883812 TAAGACCATATTTGAGACATGGCATCGGTAT
65 TAAGACCATGTTTG-GACATGGCATCGGCAT
* * * *
76883843 TGATATGTGACCTAGTGTAAAACCATGTCTAGGACATGACATCGGCGACGTTATGAGAGCCAGTG
1 TGATATGTGAGCTAGTGTAAGACCATGT-TAGGACATGGCATCGGCAACGTTATGAGAGCCAGTG
* *
76883908 TAAGACCATGTCTGGGACATGGCATCTGCAT
65 TAAGACCATGT-TTGGACATGGCATCGGCAT
* * * * ** * * *
76883939 TGAAACGAGAGCTAGTGTAAGACAATGTTTAGGACATGGCATCGGCCTCGATATGTGAGCTAGTG
1 TGATATGTGAGCTAGTGTAAGACCATG-TTAGGACATGGCATCGGCAACGTTATGAGAGCCAGTG
*
76884004 TAAGACCATGTTAGGAACATGGCATCGGCA
65 TAAGACCATGTTTGG-ACATGGCATCGGCA
76884034 ATTCACCCTC
Statistics
Matches: 161, Mismatches: 26, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
95 3 0.02
96 152 0.94
97 6 0.04
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.26
Consensus pattern (94 bp):
TGATATGTGAGCTAGTGTAAGACCATGTTAGGACATGGCATCGGCAACGTTATGAGAGCCAGTGT
AAGACCATGTTTGGACATGGCATCGGCAT
Found at i:76884024 original size:144 final size:144
Alignment explanation
Indices: 76883760--76884032 Score: 361
Period size: 144 Copynumber: 1.9 Consensus size: 144
76883750 TATGTGTGCT
* **** *
76883760 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTGTGAGAGCCAGTGTAAGACCATATTT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCAATGAAACGAGAGCCAGTGTAAGACAATATTT
* *
76883825 GAGACATGGCATCGGTATTGATATGTGACCTAGTGTAAAACCATGTCTAGGACATGACATCGGCG
66 GAGACATGGCATCGGCATCGATATGTGACCTAGTGTAAAACCATGTCTAGGACATGACATCGGCG
76883890 ACGTTATGAGAGCC
131 ACGTTATGAGAGCC
* * * * *
76883904 AGTGTAAGACCATGTCTGGGACATGGCATCTGCATTGAAACGAGAGCTAGTGTAAGACAATGTTT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCAATGAAACGAGAGCCAGTGTAAGACAATATTT
* * * *
76883969 -AGGACATGGCATCGGCCTCGATATGTGAGCTAGTGTAAGACCATGT-TAGGAACATGGCATCGG
66 GA-GACATGGCATCGGCATCGATATGTGACCTAGTGTAAAACCATGTCTAGG-ACATGACATCGG
76884032 C
129 C
76884033 AATTCACCCT
Statistics
Matches: 110, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
143 5 0.05
144 105 0.95
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.25
Consensus pattern (144 bp):
AGTGTAAGACCATGTCTGGAACATGGCATCGGCAATGAAACGAGAGCCAGTGTAAGACAATATTT
GAGACATGGCATCGGCATCGATATGTGACCTAGTGTAAAACCATGTCTAGGACATGACATCGGCG
ACGTTATGAGAGCC
Found at i:76886279 original size:18 final size:18
Alignment explanation
Indices: 76886258--76886305 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
76886248 GCTTACATGC
*
76886258 ATAGGCTCGCATAAATGA
1 ATAGGCTCACATAAATGA
*
76886276 ATAGGCTCACATAAATTA
1 ATAGGCTCACATAAATGA
*
76886294 ATATGCTCACAT
1 ATAGGCTCACAT
76886306 GTATAGGGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.27
Consensus pattern (18 bp):
ATAGGCTCACATAAATGA
Found at i:76889080 original size:47 final size:47
Alignment explanation
Indices: 76889011--76889360 Score: 565
Period size: 47 Copynumber: 7.4 Consensus size: 47
76889001 ATTGGTGTAC
76889011 AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
* * *
76889058 AAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
*
76889105 AAAGTGTATATATGTGATAAGGGCGAATGGCCAATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
*
76889152 AAAGTGTATATATGTGATAAGGCCGAATGGTCAATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
* *
76889199 AAAGTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
* * * * *
76889246 AAAGTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTG
1 AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
* *
76889293 AAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTG
1 AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
*
76889340 AAAGTGTATAAATGTGATAAG
1 AAAGTGTATATATGTGATAAG
76889361 TCCCGAAGGG
Statistics
Matches: 277, Mismatches: 26, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 277 1.00
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
Found at i:76892014 original size:18 final size:16
Alignment explanation
Indices: 76891980--76892037 Score: 57
Period size: 18 Copynumber: 3.4 Consensus size: 16
76891970 TTTTTAAACA
76891980 ATTTTTAGT-TTTCTTGT
1 ATTTTTA-TATTT-TTGT
76891997 AATTTTTATAATTTTTGT
1 -ATTTTTAT-ATTTTTGT
76892015 ATTTTGTATATTTTT-T
1 ATTTT-TATATTTTTGT
76892031 ATTTTTA
1 ATTTTTA
76892038 AAAAATTTAG
Statistics
Matches: 37, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
15 2 0.05
16 6 0.16
17 12 0.32
18 14 0.38
19 3 0.08
ACGTcount: A:0.21, C:0.02, G:0.07, T:0.71
Consensus pattern (16 bp):
ATTTTTATATTTTTGT
Found at i:76892190 original size:13 final size:13
Alignment explanation
Indices: 76892172--76892196 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76892162 AACAATTTGA
76892172 TTTTAAATTAATT
1 TTTTAAATTAATT
76892185 TTTTAAATTAAT
1 TTTTAAATTAAT
76892197 AAAGTATTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TTTTAAATTAATT
Found at i:76900039 original size:17 final size:18
Alignment explanation
Indices: 76899997--76900049 Score: 58
Period size: 17 Copynumber: 3.0 Consensus size: 18
76899987 AATTAATTTT
76899997 TTAAAATT--TTAAAAATA
1 TTAAAATTAATTAAAAA-A
76900014 TTAAAATTAATTAAAAAA
1 TTAAAATTAATTAAAAAA
*
76900032 TT-ATATTAATTATAAAAA
1 TTAAAATTAATTA-AAAAA
76900050 AAAAAATTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
17 17 0.53
18 8 0.25
19 7 0.22
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
TTAAAATTAATTAAAAAA
Found at i:76900123 original size:77 final size:77
Alignment explanation
Indices: 76900042--76900196 Score: 310
Period size: 77 Copynumber: 2.0 Consensus size: 77
76900032 TTATATTAAT
76900042 TATAAAAAAAAAAATTTTATATTTTTAAAATTTTAAAAAATAATTAATTGCTTATGTGTTATCTA
1 TATAAAAAAAAAAATTTTATATTTTTAAAATTTTAAAAAATAATTAATTGCTTATGTGTTATCTA
76900107 TGTGGCAATCCA
66 TGTGGCAATCCA
76900119 TATAAAAAAAAAAATTTTATATTTTTAAAATTTTAAAAAATAATTAATTGCTTATGTGTTATCTA
1 TATAAAAAAAAAAATTTTATATTTTTAAAATTTTAAAAAATAATTAATTGCTTATGTGTTATCTA
76900184 TGTGGCAATCCA
66 TGTGGCAATCCA
76900196 T
1 T
76900197 GTGTATGTCA
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 78 1.00
ACGTcount: A:0.44, C:0.06, G:0.08, T:0.42
Consensus pattern (77 bp):
TATAAAAAAAAAAATTTTATATTTTTAAAATTTTAAAAAATAATTAATTGCTTATGTGTTATCTA
TGTGGCAATCCA
Found at i:76903745 original size:40 final size:40
Alignment explanation
Indices: 76903675--76903852 Score: 209
Period size: 40 Copynumber: 4.5 Consensus size: 40
76903665 AAGCCAAGTA
* * * * *
76903675 CCTTCGGGATTTA-ACCGAATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
76903714 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
76903754 CCTTCAGGACTTAGCTCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
76903794 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
76903834 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
76903853 TTATCATCCA
Statistics
Matches: 121, Mismatches: 15, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
39 13 0.11
40 108 0.89
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:76908989 original size:27 final size:27
Alignment explanation
Indices: 76908959--76909013 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
76908949 AGATACAAAC
* *
76908959 TATGTAATAGTAATTTAACATTCAATT
1 TATGTAACAATAATTTAACATTCAATT
**
76908986 TATGTAACAATAATTTGCCATTCAATT
1 TATGTAACAATAATTTAACATTCAATT
76909013 T
1 T
76909014 CACATGACAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.38, C:0.11, G:0.07, T:0.44
Consensus pattern (27 bp):
TATGTAACAATAATTTAACATTCAATT
Found at i:76913768 original size:20 final size:20
Alignment explanation
Indices: 76913702--76913768 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
76913692 ATTTTAGTAA
*
76913702 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
76913722 ACATGACATGTATGCTATGC
1 ACATGATATGTATGATATGC
76913742 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
76913762 ACATGAT
1 ACATGAT
76913769 GTATTCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:76913886 original size:24 final size:24
Alignment explanation
Indices: 76913818--76913911 Score: 122
Period size: 23 Copynumber: 4.0 Consensus size: 24
76913808 GAGGAAGTGA
76913818 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
76913842 -AAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
76913864 AAAAGGGATTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
76913888 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
76913912 ATGATAAAGC
Statistics
Matches: 61, Mismatches: 5, Indels: 7
0.84 0.07 0.10
Matches are distributed among these distances:
22 10 0.16
23 22 0.36
24 19 0.31
25 10 0.16
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:76914147 original size:31 final size:31
Alignment explanation
Indices: 76914109--76914168 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
76914099 TACAGTAAAG
76914109 GCTTCGGCCCAGTAATATGAAATATGAAAAA
1 GCTTCGGCCCAGTAATATGAAATATGAAAAA
**
76914140 GCTTCGGCCCAGTGTTATGAAATATGAAA
1 GCTTCGGCCCAGTAATATGAAATATGAAA
76914169 TATGAAAAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.25
Consensus pattern (31 bp):
GCTTCGGCCCAGTAATATGAAATATGAAAAA
Found at i:76917449 original size:49 final size:49
Alignment explanation
Indices: 76917372--76917609 Score: 246
Period size: 49 Copynumber: 4.8 Consensus size: 49
76917362 CAGACAAGGC
* *
76917372 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* *
76917421 TATCCGGTACACATAGTAGCCTACACTTAGTACTACAC--GCTTGACCTAAC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGC--GACC-AAT
* * * * * * * *
76917471 CATCTGATACACGTAGTAGCCTGGACTTAGTACTACACACGTGATCGAAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-T
* * * * *
76917522 TATCGGGTGCGCATAGTAGCCTGCACTTCGTACTACACATGCAACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* *
76917571 TATCCGGTACACGTAGCAGCCTGCACTTAGTACTACACA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACA
76917610 CGTGACCTCA
Statistics
Matches: 151, Mismatches: 31, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
47 2 0.01
49 73 0.48
50 41 0.27
51 34 0.23
52 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:76917609 original size:100 final size:98
Alignment explanation
Indices: 76917389--76917616 Score: 262
Period size: 100 Copynumber: 2.3 Consensus size: 98
76917379 TACGCATAGT
* *
76917389 AGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACATAGTAGCCTACACTTAGTAC
1 AGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTACACTTAGTAC
* * *
76917454 TACACGCTTGACCTAACCATCTGATACACGTAGT
66 TACACGC-TAACCTAACCATCCGATACACGTAGC
* * * * * * *
76917488 AGCCTGGACTTAGTACTACACACGTGATCGAAGTTATCGGGTGCGCATAGTAGCCTGCACTTCGT
1 AGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACATAGTAGCCTACACTTAGT
** *
76917553 ACTACACATGC-AACC-AATTATCCGGTACACGTAGC
64 ACTACAC--GCTAACCTAACCATCCGATACACGTAGC
76917588 AGCCTGCACTTAGTACTACACACGTGACC
1 AGCCTGCACTTAGTACTACACACGTGACC
76917617 TCACAATAGA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
99 25 0.23
100 44 0.41
101 37 0.34
103 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (98 bp):
AGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTACACTTAGTAC
TACACGCTAACCTAACCATCCGATACACGTAGC
Found at i:76917883 original size:27 final size:27
Alignment explanation
Indices: 76917843--76917896 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
76917833 AGGTACAACC
* *
76917843 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
76917870 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
76917897 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:76925075 original size:24 final size:24
Alignment explanation
Indices: 76925048--76925117 Score: 64
Period size: 24 Copynumber: 3.2 Consensus size: 24
76925038 ACTAAATTGG
76925048 AAAGTGAAAATATTTAATTAATTA
1 AAAGTGAAAATATTTAATTAATTA
* *
76925072 AAAGTTG---ATA---AA-AAATGA
1 AAAG-TGAAAATATTTAATTAATTA
76925090 AAAGTGAAAATATTTAATTAATTA
1 AAAGTGAAAATATTTAATTAATTA
76925114 AAAG
1 AAAG
76925118 ATGATAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 16
0.63 0.07 0.30
Matches are distributed among these distances:
17 2 0.06
18 8 0.24
19 2 0.06
20 3 0.09
22 3 0.09
23 2 0.06
24 12 0.35
25 2 0.06
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.31
Consensus pattern (24 bp):
AAAGTGAAAATATTTAATTAATTA
Found at i:76925096 original size:42 final size:42
Alignment explanation
Indices: 76925048--76925133 Score: 163
Period size: 42 Copynumber: 2.0 Consensus size: 42
76925038 ACTAAATTGG
*
76925048 AAAGTGAAAATATTTAATTAATTAAAAGTTGATAAAAAATGA
1 AAAGTGAAAATATTTAATTAATTAAAAGATGATAAAAAATGA
76925090 AAAGTGAAAATATTTAATTAATTAAAAGATGATAAAAAATGA
1 AAAGTGAAAATATTTAATTAATTAAAAGATGATAAAAAATGA
76925132 AA
1 AA
76925134 TATCATTTTC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.59, C:0.00, G:0.12, T:0.29
Consensus pattern (42 bp):
AAAGTGAAAATATTTAATTAATTAAAAGATGATAAAAAATGA
Found at i:76926987 original size:9 final size:9
Alignment explanation
Indices: 76926973--76926999 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
76926963 TAATCCAAGA
76926973 TGATGTATT
1 TGATGTATT
76926982 TGATGTATT
1 TGATGTATT
76926991 TGATGTATT
1 TGATGTATT
76927000 CATGAATAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.22, T:0.56
Consensus pattern (9 bp):
TGATGTATT
Found at i:76933931 original size:35 final size:35
Alignment explanation
Indices: 76933885--76933957 Score: 128
Period size: 35 Copynumber: 2.1 Consensus size: 35
76933875 AGCTAAGCCT
*
76933885 TAAAGTACTAAGCGTGCGGATGCTTAAAGCATGAA
1 TAAAGTACTAAGCGTGCGAATGCTTAAAGCATGAA
*
76933920 TAAAGTACTAAGTGTGCGAATGCTTAAAGCATGAA
1 TAAAGTACTAAGCGTGCGAATGCTTAAAGCATGAA
76933955 TAA
1 TAA
76933958 TCTTCGGAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.40, C:0.12, G:0.23, T:0.25
Consensus pattern (35 bp):
TAAAGTACTAAGCGTGCGAATGCTTAAAGCATGAA
Found at i:76938288 original size:40 final size:40
Alignment explanation
Indices: 76938244--76938467 Score: 308
Period size: 40 Copynumber: 5.6 Consensus size: 40
76938234 AAGTGAATAT
* * * * **
76938244 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTGTTAA
76938284 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
76938324 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
76938364 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * **
76938404 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * *
76938443 AACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
76938468 TGAACGAGGA
Statistics
Matches: 171, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 35 0.20
40 136 0.80
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
Found at i:76938342 original size:80 final size:80
Alignment explanation
Indices: 76938205--76938467 Score: 318
Period size: 80 Copynumber: 3.3 Consensus size: 80
76938195 TTGAATGCTG
* * * * *
76938205 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCC
*
76938267 TTTGTGCGAGATACTAAA
63 TTTGTGCGAGTTACTAAA
* * *
76938285 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
**
76938350 GTGCGAGTTGTTAAA
66 GTGCGAGTTACTAAA
* * *
76938365 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
76938429 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
76938444 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
76938468 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
79 35 0.22
80 116 0.73
81 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:76938419 original size:120 final size:120
Alignment explanation
Indices: 76938205--76938467 Score: 318
Period size: 120 Copynumber: 2.2 Consensus size: 120
76938195 TTGAATGCTG
* * *
76938205 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
* **
76938269 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
66 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* * * *
76938325 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAG-TGAATAAATCCGGATTAAGAT-CCGAAGGCA
* ** * *
76938387 TTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
64 TTCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
76938444 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
76938468 TGAACGAGGA
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
119 34 0.28
120 80 0.66
121 8 0.07
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:76947020 original size:26 final size:26
Alignment explanation
Indices: 76946941--76947021 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
76946931 TTCGATCACG
76946941 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
* *
76946967 TGTATA-T-CGGATAGTG-ATGG-TCAC-A
1 TGTGTAGTAC-TAT-GTGCA-GGCT-ACTA
76946992 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
76947018 TGTG
1 TGTG
76947022 AACTGGTATC
Statistics
Matches: 42, Mismatches: 4, Indels: 18
0.66 0.06 0.28
Matches are distributed among these distances:
24 1 0.02
25 18 0.43
26 22 0.52
27 1 0.02
ACGTcount: A:0.23, C:0.14, G:0.28, T:0.35
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAGGCTACTA
Found at i:76947020 original size:51 final size:51
Alignment explanation
Indices: 76946851--76947020 Score: 211
Period size: 51 Copynumber: 3.3 Consensus size: 51
76946841 GCACGGACTG
* * *
76946851 TGTGCAGGCCACTATGTA-AAAGTGAAAGTGATGGTCACGTGTGTAGTACTA
1 TGTGCAGGCTACTATGTATAACG-GATAGTGATGGTCACGTGTGTAGTACTA
* * * *
76946902 TGTGTAGGCTACTATGCATACCGGATAGCT--TCGATCACGTGTGTAGTACTA
1 TGTGCAGGCTACTATGTATAACGGATAG-TGAT-GGTCACGTGTGTAGTACTA
* *
76946953 TGTGCAGGCTACTATGTATATCGGATAGTGATGGTCACATGTGTAGTACTA
1 TGTGCAGGCTACTATGTATAACGGATAGTGATGGTCACGTGTGTAGTACTA
76947004 TGTGCAGGCTACTATGT
1 TGTGCAGGCTACTATGT
76947021 GAACTGGTAT
Statistics
Matches: 102, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
50 2 0.02
51 96 0.94
52 4 0.04
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (51 bp):
TGTGCAGGCTACTATGTATAACGGATAGTGATGGTCACGTGTGTAGTACTA
Found at i:76947218 original size:102 final size:102
Alignment explanation
Indices: 76947042--76947374 Score: 605
Period size: 102 Copynumber: 3.3 Consensus size: 102
76947032 TTTGAATATA
76947042 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGTTGATTCCCCGATTCATTGGT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGTTGATTCCCCGATTCATTGGT
76947107 GGTTGCTAAGTGCTGATTCCACCATATTTCAAATGTG
66 GGTTGCTAAGTGCTGATTCCACCATATTTCAAATGTG
76947144 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGTTGATTCCCCGATTCATTGGT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGTTGATTCCCCGATTCATTGGT
76947209 GGTTGCTAAGTGCTGATTCCACCATATTTCAAATGTG
66 GGTTGCTAAGTGCTGATTCCACCATATTTCAAATGTG
*
76947246 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGTTGATTCCCCGATTCATTGGT
* * *
76947311 GGTTGCTAAGTGCAGATCCCACCGTATCTT-AAATGTG
66 GGTTGCTAAGTGCTGATTCCACCATAT-TTCAAATGTG
*
76947348 AAAGGGGTTGCTAAGTGCTGATTCCCC
1 AAGGGGGTTGCTAAGTGCTGATTCCCC
76947375 GATTCATTGG
Statistics
Matches: 225, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
102 223 0.99
103 2 0.01
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.31
Consensus pattern (102 bp):
AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGTTGATTCCCCGATTCATTGGT
GGTTGCTAAGTGCTGATTCCACCATATTTCAAATGTG
Found at i:76947560 original size:76 final size:75
Alignment explanation
Indices: 76947274--76947549 Score: 491
Period size: 75 Copynumber: 3.7 Consensus size: 75
76947264 TGATTCCCCC
76947274 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCAGATCCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCAGATCCCACCGTATC
76947339 TTAAATGTGA
66 TTAAATGTGA
76947349 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCAGATCCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCAGATCCCACCGTATC
76947414 TTAAATGTGA
66 TTAAATGTGA
* *
76947424 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGGAGATTCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCAGATCCCACCGTATC
*
76947489 ATTGAATGTGA
66 -TTAAATGTGA
*
76947500 AAGGGGTTGCTAAGTGCTGATTCCCCG-TATCACTGGTGGTTGCTAAGTGC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAT-TCATTGGTGGTTGCTAAGTGC
76947550 TGAATCCACC
Statistics
Matches: 194, Mismatches: 5, Indels: 3
0.96 0.02 0.01
Matches are distributed among these distances:
75 139 0.72
76 55 0.28
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (75 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCAGATCCCACCGTATC
TTAAATGTGA
Found at i:76950102 original size:85 final size:85
Alignment explanation
Indices: 76949959--76950129 Score: 324
Period size: 85 Copynumber: 2.0 Consensus size: 85
76949949 GGTAATGATG
*
76949959 ATGTTGGTGATATTTTAATTAATTAATTAGATAAATGTTATTTAATTATTATTTTATTAAGATTT
1 ATGTTGGTGATATTTTAATTAATTAATTAGATAAATATTATTTAATTATTATTTTATTAAGATTT
76950024 TTAGTATTATTTTATTAATA
66 TTAGTATTATTTTATTAATA
*
76950044 ATGTTGTTGATATTTTAATTAATTAATTAGATAAATATTATTTAATTATTATTTTATTAAGATTT
1 ATGTTGGTGATATTTTAATTAATTAATTAGATAAATATTATTTAATTATTATTTTATTAAGATTT
76950109 TTAGTATTATTTTATTAATA
66 TTAGTATTATTTTATTAATA
76950129 A
1 A
76950130 ATGATTAATA
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 84 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (85 bp):
ATGTTGGTGATATTTTAATTAATTAATTAGATAAATATTATTTAATTATTATTTTATTAAGATTT
TTAGTATTATTTTATTAATA
Found at i:76950575 original size:24 final size:24
Alignment explanation
Indices: 76950535--76950581 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
76950525 AAAGGAAAAT
*
76950535 AAGAGAAAGTGATGGAAAATGTTG
1 AAGAGAAAGTGAAGGAAAATGTTG
*
76950559 AAGAGAAAG-GAAAGGAAAGTGTT
1 AAGAGAAAGTG-AAGGAAAATGTT
76950582 ATAAATTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.49, C:0.00, G:0.34, T:0.17
Consensus pattern (24 bp):
AAGAGAAAGTGAAGGAAAATGTTG
Found at i:76957913 original size:50 final size:50
Alignment explanation
Indices: 76957801--76957999 Score: 166
Period size: 50 Copynumber: 3.9 Consensus size: 50
76957791 CATTTGGGTA
*
76957801 AAGAGATCCCATGTAAGACCATGTT-TGGGACATGGCATTGGCATCATTGAGATT
1 AAGAGGTCCCATGTAAGACCAT-TTCTGGGACATGGCATTGGCA-C--TGAGA-T
*
76957855 ATGAGAGGTCCCATGTAAGACCATTTCTGGGACATGGCGTTGGCACTGAGAT
1 A--AGAGGTCCCATGTAAGACCATTTCTGGGACATGGCATTGGCACTGAGAT
**** * * * * *
76957907 AAGAGGTCCCCCACATGACCATGTCTGGGACATGGCATGGGCACCGATAT
1 AAGAGGTCCCATGTAAGACCATTTCTGGGACATGGCATTGGCACTGAGAT
* ** * * * *
76957957 GAGAACTCCAATGTAAGACCATATCTGGGATATGACATTGGCA
1 AAGAGGTCCCATGTAAGACCATTTCTGGGACATGGCATTGGCA
76958000 GTACAGAAAA
Statistics
Matches: 117, Mismatches: 25, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
50 69 0.59
52 2 0.02
53 5 0.04
54 1 0.01
55 3 0.03
56 37 0.32
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.24
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATTTCTGGGACATGGCATTGGCACTGAGAT
Found at i:76958265 original size:12 final size:12
Alignment explanation
Indices: 76958248--76958286 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
76958238 ATGAGTTATT
76958248 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
76958260 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
76958272 TAAGTGAGTAAG
1 TAAGTAAGCAAG
76958284 TAA
1 TAA
76958287 AGAAGCGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:76964106 original size:56 final size:56
Alignment explanation
Indices: 76964041--76964153 Score: 190
Period size: 56 Copynumber: 2.0 Consensus size: 56
76964031 TAAGCTCACC
*
76964041 CCCAACACTGTTTAAATTTTCAAGTAAACCTCAAAATTAGAACCGAACTCGGCATT
1 CCCAACACTGTTTAAATTTTCAAGTAAACCTCAAAAATAGAACCGAACTCGGCATT
* * *
76964097 CCCAACACTGTTTAAATTTTCAAGTAAACCTCAAAAATAGGACCGGACTTGGCATT
1 CCCAACACTGTTTAAATTTTCAAGTAAACCTCAAAAATAGAACCGAACTCGGCATT
76964153 C
1 C
76964154 GGAGAATCAA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.36, C:0.25, G:0.12, T:0.27
Consensus pattern (56 bp):
CCCAACACTGTTTAAATTTTCAAGTAAACCTCAAAAATAGAACCGAACTCGGCATT
Found at i:76965408 original size:21 final size:21
Alignment explanation
Indices: 76965359--76965408 Score: 50
Period size: 20 Copynumber: 2.4 Consensus size: 21
76965349 AAAACTATAT
*
76965359 TTTGGTATTCATTATTTTGGGA
1 TTTGGT-TTAATTATTTTGGGA
*
76965381 TGT-GTTTAATTACTTTT-GGA
1 TTTGGTTTAATTA-TTTTGGGA
76965401 TTTGGTTT
1 TTTGGTTT
76965409 TAGATTTGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 5
0.74 0.10 0.16
Matches are distributed among these distances:
20 11 0.48
21 10 0.43
22 2 0.09
ACGTcount: A:0.16, C:0.04, G:0.22, T:0.58
Consensus pattern (21 bp):
TTTGGTTTAATTATTTTGGGA
Found at i:76968307 original size:40 final size:40
Alignment explanation
Indices: 76968224--76968369 Score: 181
Period size: 40 Copynumber: 3.6 Consensus size: 40
76968214 TTGAATGATG
* * *
76968224 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAA
* *
76968264 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAA
*
76968304 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AA
*
76968345 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
76968370 AGCGAGTAGC
Statistics
Matches: 92, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
39 1 0.01
40 81 0.88
41 10 0.11
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:76968361 original size:80 final size:80
Alignment explanation
Indices: 76968224--76968402 Score: 213
Period size: 80 Copynumber: 2.2 Consensus size: 80
76968214 TTGAATGATG
* *
76968224 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
*
76968289 GTGCGAGTTA-CTAAA
66 GAGCGAG-TAGCTAAA
* * * *
76968304 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-AAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
*
76968367 TTGAGCGAGTAGCTATA
64 TTGAGCGAGTAGCTAAA
* *
76968384 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
76968403 TACGTGATTT
Statistics
Matches: 86, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
79 17 0.20
80 62 0.72
81 7 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAGCGAGTAGCTAAA
Found at i:76970572 original size:41 final size:40
Alignment explanation
Indices: 76970491--76970658 Score: 194
Period size: 41 Copynumber: 4.1 Consensus size: 40
76970481 AGAGTACCGT
* * *
76970491 TGAATTGCACAAACGTGCCTCT-TTTGTACTTCGGTACCCC
1 TGAATTGCACATACATGCC-CTGTTTGTACTTCAGTACCCC
*
76970531 TGAATTGCACATACATGCTCCTGTTTGTACTTCAGTGCCCC
1 TGAATTGCACATACATGC-CCTGTTTGTACTTCAGTACCCC
* * *
76970572 TGAATTGCTCATTCATGCCCCTGTTTGTACTTCAGTGCCCC
1 TGAATTGCACATACATG-CCCTGTTTGTACTTCAGTACCCC
* * **
76970613 TGAATTGCACATACGTGCCCTTCTTTGTACTTTGGTACCCC
1 TGAATTGCACATACATGCCC-TGTTTGTACTTCAGTACCCC
76970654 TGAAT
1 TGAAT
76970659 GAAGTTTTGT
Statistics
Matches: 111, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
40 21 0.19
41 89 0.80
42 1 0.01
ACGTcount: A:0.18, C:0.29, G:0.17, T:0.35
Consensus pattern (40 bp):
TGAATTGCACATACATGCCCTGTTTGTACTTCAGTACCCC
Found at i:76970590 original size:21 final size:22
Alignment explanation
Indices: 76970517--76970620 Score: 80
Period size: 20 Copynumber: 5.0 Consensus size: 22
76970507 GCCTCTTTTG
* *
76970517 TACTTCGGTACCCCTGAATTGC
1 TACTTCAGTGCCCCTGAATTGC
* * *
76970539 -ACATACA-TGCTCCTG-TTTG-
1 TAC-TTCAGTGCCCCTGAATTGC
76970558 TACTTCAGTGCCCCTGAATTGC
1 TACTTCAGTGCCCCTGAATTGC
*
76970580 T-CATTCA-TGCCCCTG-TTTG-
1 TAC-TTCAGTGCCCCTGAATTGC
76970599 TACTTCAGTGCCCCTGAATTGC
1 TACTTCAGTGCCCCTGAATTGC
76970621 ACATACGTGC
Statistics
Matches: 62, Mismatches: 10, Indels: 20
0.67 0.11 0.22
Matches are distributed among these distances:
19 8 0.13
20 24 0.39
21 23 0.37
22 7 0.11
ACGTcount: A:0.17, C:0.31, G:0.17, T:0.35
Consensus pattern (22 bp):
TACTTCAGTGCCCCTGAATTGC
Found at i:76970632 original size:21 final size:21
Alignment explanation
Indices: 76970527--76970632 Score: 76
Period size: 21 Copynumber: 5.1 Consensus size: 21
76970517 TACTTCGGTA
* *
76970527 CCCCTGAATTGCACATACATG
1 CCCCTGAATTGCACATTCGTG
* * *
76970548 CTCCTG-TTTGTAC-TTCAGTG
1 CCCCTGAATTGCACATTC-GTG
* *
76970568 CCCCTGAATTGCTCATTCATG
1 CCCCTGAATTGCACATTCGTG
* *
76970589 CCCCTG-TTTGTAC-TTCAGTG
1 CCCCTGAATTGCACATTC-GTG
*
76970609 CCCCTGAATTGCACATACGTG
1 CCCCTGAATTGCACATTCGTG
76970630 CCC
1 CCC
76970633 TTCTTTGTAC
Statistics
Matches: 62, Mismatches: 17, Indels: 12
0.68 0.19 0.13
Matches are distributed among these distances:
19 5 0.08
20 24 0.39
21 28 0.45
22 5 0.08
ACGTcount: A:0.18, C:0.33, G:0.17, T:0.32
Consensus pattern (21 bp):
CCCCTGAATTGCACATTCGTG
Found at i:76973372 original size:85 final size:86
Alignment explanation
Indices: 76973274--76973445 Score: 310
Period size: 87 Copynumber: 2.0 Consensus size: 86
76973264 TGGTCATAAT
76973274 GTGTATGTATTGATGCTGAATGGAATGAATAAATATAC-ATATATATATATGCATGTACGTATGT
1 GTGTATGTATTGATGCTGAATGGAATGAATAAATATACAATATATATATATGCATGTACGTATGT
76973338 GATGATGAAATTGATGAATGA
66 GATGATGAAATTGATGAATGA
*
76973359 GTGTATGTATTGATGCTGAATGGAATGAATAAATATACATATATATATATATGCATTTACGTATG
1 GTGTATGTATTGATGCTGAATGGAATGAATAAATATACA-ATATATATATATGCATGTACGTATG
*
76973424 TGATGATGAAATTGTTGAATGA
65 TGATGATGAAATTGATGAATGA
76973446 AAGAAAAGAG
Statistics
Matches: 83, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
85 38 0.46
87 45 0.54
ACGTcount: A:0.37, C:0.05, G:0.22, T:0.37
Consensus pattern (86 bp):
GTGTATGTATTGATGCTGAATGGAATGAATAAATATACAATATATATATATGCATGTACGTATGT
GATGATGAAATTGATGAATGA
Found at i:76973583 original size:27 final size:26
Alignment explanation
Indices: 76973552--76973729 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
76973542 TAAATTGTAC
76973552 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
76973579 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
76973605 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
76973633 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
76973661 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* * *
76973688 AGCACTAAGTGTGTGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
76973715 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
76973730 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 25 0.20
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:76973720 original size:82 final size:81
Alignment explanation
Indices: 76973549--76973729 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
76973539 GATTAAATTG
* * *
76973549 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
76973614 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
76973630 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* * **
76973694 AAGTGTGTGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
76973712 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
76973730 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 20 0.24
82 62 0.76
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:76981599 original size:27 final size:26
Alignment explanation
Indices: 76981568--76981745 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
76981558 TAAATTGTAC
76981568 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
76981595 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
76981621 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
76981649 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
76981677 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
76981704 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
76981731 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
76981746 GGCTCAATAT
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 102 0.80
28 25 0.20
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:76981684 original size:82 final size:81
Alignment explanation
Indices: 76981569--76981724 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
76981559 AAATTGTACA
* * *
76981569 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
76981633 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
76981650 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
76981715 TGCGAGTTGA
65 TGCGAATTGA
76981725 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 17 0.26
82 48 0.73
83 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:76981736 original size:82 final size:81
Alignment explanation
Indices: 76981565--76981745 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
76981555 GATTAAATTG
* * *
76981565 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
76981630 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
76981646 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
76981710 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
76981728 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
76981746 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:76981756 original size:27 final size:27
Alignment explanation
Indices: 76981650--76981756 Score: 79
Period size: 27 Copynumber: 3.9 Consensus size: 27
76981640 TGACCATGCG
* * *
76981650 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
76981678 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
76981705 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
76981732 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
76981757 CATTCGTGAA
Statistics
Matches: 67, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
27 52 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:76983385 original size:132 final size:132
Alignment explanation
Indices: 76983148--76983894 Score: 1251
Period size: 132 Copynumber: 5.7 Consensus size: 132
76983138 CGCCATCGTC
* ** * * *
76983148 GATCTGCTTTCTTCGATCTACTTTACCACCAGTATGGGAAGACAGGATCTGCGTCGTCGATCCAC
1 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCAC
* * * * ** *
76983213 TTCCAATCATTATAGGAAGATAGGACCTGTTATCTTTGATCTACTTCACGCCAATACATGAAAAC
66 TTCCTACCAATATAGGAAGATAAGACCTACTATCTTTGATCTACTTCACGCCAATACATGAAGAC
76983278 AA
131 AA
* * *
76983280 GATCTGCTTTCTGCGATCTACTTCGCCATCAATATGGGAAGACAAGATCTGCATCTTGGATCCAC
1 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCAC
*
76983345 TTCCTACCAATATAGGAAGACAAGACCTACTATCTTTGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTACCAATATAGGAAGATAAGACCTACTATCTTTGATCTACTTCACGCCAATACATGAAGAC
76983410 AA
131 AA
* * *
76983412 GATCTGCTTTCTGCGATCTACTTCGCCATCAATATGGGAAGACAAGATCTGCATCTTGGATCCAC
1 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCAC
*
76983477 TTCCTACCAATATAGGAAGACAAGACCTACTATCTTTGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTACCAATATAGGAAGATAAGACCTACTATCTTTGATCTACTTCACGCCAATACATGAAGAC
76983542 AA
131 AA
76983544 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCAC
1 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCAC
*
76983609 CTCCTACCAATATAGGAAGATAAGACCTACTATCTTTGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTACCAATATAGGAAGATAAGACCTACTATCTTTGATCTACTTCACGCCAATACATGAAGAC
76983674 AA
131 AA
76983676 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCAC
1 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCAC
*
76983741 CTCCTACCAATATAGGAAGATAAGACCTACTATCTTTGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTACCAATATAGGAAGATAAGACCTACTATCTTTGATCTACTTCACGCCAATACATGAAGAC
76983806 AA
131 AA
* * * *
76983808 GATCTGCTTTCTACGATCTACTTCGCCCCCAATATGGGAAGACAAGATCTGCATCTTTGATCCAC
1 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCAC
76983873 TTCCTACCAATATAGGAAGATA
66 TTCCTACCAATATAGGAAGATA
76983895 GGATATGTTC
Statistics
Matches: 588, Mismatches: 27, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 588 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (132 bp):
GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCAC
TTCCTACCAATATAGGAAGATAAGACCTACTATCTTTGATCTACTTCACGCCAATACATGAAGAC
AA
Found at i:76984767 original size:10 final size:10
Alignment explanation
Indices: 76984752--76984778 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
76984742 GGCCTCTCCC
76984752 TTTTTTTTGT
1 TTTTTTTTGT
76984762 TTTTTTTTGT
1 TTTTTTTTGT
76984772 TTTTTTT
1 TTTTTTT
76984779 AGGCAAAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (10 bp):
TTTTTTTTGT
Found at i:77000226 original size:23 final size:22
Alignment explanation
Indices: 77000175--77000239 Score: 87
Period size: 23 Copynumber: 2.9 Consensus size: 22
77000165 GTTTTAAAAT
* *
77000175 TTGGGCTCAGGTAGTTTTA-GGA
1 TTGGGCT-AGGTTGGTTTAGGGA
77000197 TTGGGCTAGGTTGGTTTAGGGTA
1 TTGGGCTAGGTTGGTTTAGGG-A
77000220 TTGGGCTAGGTTGGTTTAGG
1 TTGGGCTAGGTTGGTTTAGG
77000240 CTTGGTTTAG
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
21 9 0.23
22 9 0.23
23 21 0.54
ACGTcount: A:0.14, C:0.06, G:0.42, T:0.38
Consensus pattern (22 bp):
TTGGGCTAGGTTGGTTTAGGGA
Found at i:77002682 original size:6 final size:6
Alignment explanation
Indices: 77002671--77002708 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
77002661 TAAATCATTT
77002671 AAACAA AAACAA AAACAA AAACAA AAAC-A AAACAA AAA
1 AAACAA AAACAA AAACAA AAACAA AAACAA AAACAA AAA
77002709 GAAGTAACGT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 5 0.16
6 26 0.84
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (6 bp):
AAACAA
Found at i:77002694 original size:18 final size:17
Alignment explanation
Indices: 77002671--77002708 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
77002661 TAAATCATTT
77002671 AAACAAAAACAAAAACAA
1 AAACAAAAAC-AAAACAA
77002689 AAACAAAAACAAAACAA
1 AAACAAAAACAAAACAA
77002706 AAA
1 AAA
77002709 GAAGTAACGT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (17 bp):
AAACAAAAACAAAACAA
Found at i:77010689 original size:20 final size:20
Alignment explanation
Indices: 77010664--77010704 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
77010654 CATATTTCTG
77010664 TCTCCCAATCAGCAATGGTA
1 TCTCCCAATCAGCAATGGTA
77010684 TCTCCCAATCAGCAATGGTA
1 TCTCCCAATCAGCAATGGTA
77010704 T
1 T
77010705 GATGAAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (20 bp):
TCTCCCAATCAGCAATGGTA
Found at i:77018637 original size:26 final size:26
Alignment explanation
Indices: 77018608--77018665 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
77018598 CACGATATAT
*
77018608 GGCTCTTCGTGAGCTTTTCGATTAAA
1 GGCTCTTCGTGAGCTTTTCAATTAAA
* *
77018634 GGCTCTTTGTGAGCTTTTCAATTAAT
1 GGCTCTTCGTGAGCTTTTCAATTAAA
77018660 GGCTCT
1 GGCTCT
77018666 CCAGAGCTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.17, C:0.19, G:0.22, T:0.41
Consensus pattern (26 bp):
GGCTCTTCGTGAGCTTTTCAATTAAA
Found at i:77018844 original size:25 final size:25
Alignment explanation
Indices: 77018748--77018861 Score: 97
Period size: 25 Copynumber: 4.6 Consensus size: 25
77018738 TTTGGAGTTA
*
77018748 CCCGTTAT-TAGCTCACATGAGCTT
1 CCCGTTATATGGCTCACATGAGCTT
* * **
77018772 CCTGAT-TATGGCTCTTATGAGCTT
1 CCCGTTATATGGCTCACATGAGCTT
* ** * ** *
77018796 TCCGTTATACAGCCCGGATAAGCTT
1 CCCGTTATATGGCTCACATGAGCTT
77018821 CCCGTTATATGGCTCACATGAGCTT
1 CCCGTTATATGGCTCACATGAGCTT
*
77018846 CCTGTTATATGGCTCA
1 CCCGTTATATGGCTCA
77018862 AGAGAGGGCT
Statistics
Matches: 66, Mismatches: 22, Indels: 3
0.73 0.24 0.03
Matches are distributed among these distances:
23 1 0.02
24 20 0.30
25 45 0.68
ACGTcount: A:0.20, C:0.26, G:0.19, T:0.34
Consensus pattern (25 bp):
CCCGTTATATGGCTCACATGAGCTT
Found at i:77021135 original size:191 final size:191
Alignment explanation
Indices: 77020811--77021192 Score: 764
Period size: 191 Copynumber: 2.0 Consensus size: 191
77020801 TAATTTGGTT
77020811 GTTTGTTTTAGATCATGGGTGATGCAAATAAATGATTTATGTGACCATGATATATGTGTTTGGTT
1 GTTTGTTTTAGATCATGGGTGATGCAAATAAATGATTTATGTGACCATGATATATGTGTTTGGTT
77020876 TTATGAATGAATGATATGAATATTATAGAATTGGTTTTTGAATAGGTGTATATAAAACCATGTAT
66 TTATGAATGAATGATATGAATATTATAGAATTGGTTTTTGAATAGGTGTATATAAAACCATGTAT
77020941 ATTCGACCATATAGATAGTATATATATACAAGATGTTATATTATGATTTTGAGCTCGTGTA
131 ATTCGACCATATAGATAGTATATATATACAAGATGTTATATTATGATTTTGAGCTCGTGTA
77021002 GTTTGTTTTAGATCATGGGTGATGCAAATAAATGATTTATGTGACCATGATATATGTGTTTGGTT
1 GTTTGTTTTAGATCATGGGTGATGCAAATAAATGATTTATGTGACCATGATATATGTGTTTGGTT
77021067 TTATGAATGAATGATATGAATATTATAGAATTGGTTTTTGAATAGGTGTATATAAAACCATGTAT
66 TTATGAATGAATGATATGAATATTATAGAATTGGTTTTTGAATAGGTGTATATAAAACCATGTAT
77021132 ATTCGACCATATAGATAGTATATATATACAAGATGTTATATTATGATTTTGAGCTCGTGTA
131 ATTCGACCATATAGATAGTATATATATACAAGATGTTATATTATGATTTTGAGCTCGTGTA
77021193 TATAAGTGTA
Statistics
Matches: 191, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
191 191 1.00
ACGTcount: A:0.33, C:0.06, G:0.20, T:0.41
Consensus pattern (191 bp):
GTTTGTTTTAGATCATGGGTGATGCAAATAAATGATTTATGTGACCATGATATATGTGTTTGGTT
TTATGAATGAATGATATGAATATTATAGAATTGGTTTTTGAATAGGTGTATATAAAACCATGTAT
ATTCGACCATATAGATAGTATATATATACAAGATGTTATATTATGATTTTGAGCTCGTGTA
Found at i:77021428 original size:18 final size:18
Alignment explanation
Indices: 77021374--77021430 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
77021364 AGTTTAATTA
77021374 CTTACTAAGCTATTATAG
1 CTTACTAAGCTATTATAG
**
77021392 CTTA-TTTGC--TTAT-G
1 CTTACTAAGCTATTATAG
77021406 ACTTACTAAGCTATTATAG
1 -CTTACTAAGCTATTATAG
77021425 CTTACT
1 CTTACT
77021431 GTGGGTATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 10
0.68 0.09 0.23
Matches are distributed among these distances:
14 1 0.03
15 8 0.27
16 3 0.10
17 3 0.10
18 14 0.47
19 1 0.03
ACGTcount: A:0.28, C:0.18, G:0.11, T:0.44
Consensus pattern (18 bp):
CTTACTAAGCTATTATAG
Found at i:77028117 original size:17 final size:17
Alignment explanation
Indices: 77028095--77028130 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
77028085 GATCACAAGA
77028095 TGAATTTCATACCCATT
1 TGAATTTCATACCCATT
*
77028112 TGAATTTCATACGCATT
1 TGAATTTCATACCCATT
77028129 TG
1 TG
77028131 TGACCCTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.28, C:0.19, G:0.11, T:0.42
Consensus pattern (17 bp):
TGAATTTCATACCCATT
Found at i:77031769 original size:24 final size:24
Alignment explanation
Indices: 77031742--77031791 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
77031732 AATGAAAGAA
77031742 CTATGCTACATCAAAGAGGAAATT
1 CTATGCTACATCAAAGAGGAAATT
77031766 CTATGCTACATCAAAGAGGAAATT
1 CTATGCTACATCAAAGAGGAAATT
77031790 CT
1 CT
77031792 TCTCATACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.26
Consensus pattern (24 bp):
CTATGCTACATCAAAGAGGAAATT
Found at i:77032121 original size:21 final size:20
Alignment explanation
Indices: 77032100--77032137 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
77032090 AATATTATGA
77032100 AAAC-ATATTGGTTCAAACTG
1 AAACAATATT-GTTCAAACTG
*
77032120 AATCAATATTGTTCAAAC
1 AAACAATATTGTTCAAAC
77032138 ATTACACAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.32
Consensus pattern (20 bp):
AAACAATATTGTTCAAACTG
Found at i:77034459 original size:11 final size:11
Alignment explanation
Indices: 77034443--77034470 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
77034433 CAACTATCAC
77034443 CATTCATTCAT
1 CATTCATTCAT
77034454 CATTCATTCAT
1 CATTCATTCAT
77034465 CATTCA
1 CATTCA
77034471 AATAATAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.43
Consensus pattern (11 bp):
CATTCATTCAT
Found at i:77036160 original size:11 final size:11
Alignment explanation
Indices: 77036144--77036171 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
77036134 CAACTATCAC
77036144 CATTCATTCAT
1 CATTCATTCAT
77036155 CATTCATTCAT
1 CATTCATTCAT
77036166 CATTCA
1 CATTCA
77036172 AATAATAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.43
Consensus pattern (11 bp):
CATTCATTCAT
Found at i:77047328 original size:76 final size:76
Alignment explanation
Indices: 77047202--77047351 Score: 264
Period size: 76 Copynumber: 2.0 Consensus size: 76
77047192 TCGTCGTCGG
* * *
77047202 TAAGTTCGTGTCCATTGTTTGGGTTATTGTTGTCGTTTCGTAAATTAAATTGCTAAAAGGGTGTT
1 TAAGTTCATGTCCATTGTTTGGGTTATTATTGTCGTTTCGTAAATTAAATTGCTAAAAAGGTGTT
77047267 TGGTATGCCGA
66 TGGTATGCCGA
*
77047278 TAAGTTCATGTGCATTGTTTGGGTTATTATTGTCGTTTCGTAAATTAAATTGCTAAAAAGGTGTT
1 TAAGTTCATGTCCATTGTTTGGGTTATTATTGTCGTTTCGTAAATTAAATTGCTAAAAAGGTGTT
77047343 TGGTATGCC
66 TGGTATGCC
77047352 ATTTTTAGGT
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
76 70 1.00
ACGTcount: A:0.23, C:0.10, G:0.25, T:0.43
Consensus pattern (76 bp):
TAAGTTCATGTCCATTGTTTGGGTTATTATTGTCGTTTCGTAAATTAAATTGCTAAAAAGGTGTT
TGGTATGCCGA
Found at i:77051599 original size:241 final size:241
Alignment explanation
Indices: 77051176--77051656 Score: 962
Period size: 241 Copynumber: 2.0 Consensus size: 241
77051166 CTAAATGGTT
77051176 CAATGGCATGTATAGGTCTTTTGAGTATTTTGTTATATGTGTCATTTGATTTGCCAAATGAAGGC
1 CAATGGCATGTATAGGTCTTTTGAGTATTTTGTTATATGTGTCATTTGATTTGCCAAATGAAGGC
77051241 TTACAAAGATAAATCTATCTTTTTGTTTATGGCCATACAGATCGGCTTGCCTTGAAGTAGGCTAT
66 TTACAAAGATAAATCTATCTTTTTGTTTATGGCCATACAGATCGGCTTGCCTTGAAGTAGGCTAT
77051306 GATCTTCGAAATTTCCGAGTCATGTGCGATGGTTAAATTCCAATTGGCAATGAGTCATAAGAACG
131 GATCTTCGAAATTTCCGAGTCATGTGCGATGGTTAAATTCCAATTGGCAATGAGTCATAAGAACG
77051371 AGCCAATCTTGAATGTATTAAAGTGGTATGACAACACATAAATACA
196 AGCCAATCTTGAATGTATTAAAGTGGTATGACAACACATAAATACA
77051417 CAATGGCATGTATAGGTCTTTTGAGTATTTTGTTATATGTGTCATTTGATTTGCCAAATGAAGGC
1 CAATGGCATGTATAGGTCTTTTGAGTATTTTGTTATATGTGTCATTTGATTTGCCAAATGAAGGC
77051482 TTACAAAGATAAATCTATCTTTTTGTTTATGGCCATACAGATCGGCTTGCCTTGAAGTAGGCTAT
66 TTACAAAGATAAATCTATCTTTTTGTTTATGGCCATACAGATCGGCTTGCCTTGAAGTAGGCTAT
77051547 GATCTTCGAAATTTCCGAGTCATGTGCGATGGTTAAATTCCAATTGGCAATGAGTCATAAGAACG
131 GATCTTCGAAATTTCCGAGTCATGTGCGATGGTTAAATTCCAATTGGCAATGAGTCATAAGAACG
77051612 AGCCAATCTTGAATGTATTAAAGTGGTATGACAACACATAAATAC
196 AGCCAATCTTGAATGTATTAAAGTGGTATGACAACACATAAATAC
77051657 GAAACCAATG
Statistics
Matches: 240, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
241 240 1.00
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (241 bp):
CAATGGCATGTATAGGTCTTTTGAGTATTTTGTTATATGTGTCATTTGATTTGCCAAATGAAGGC
TTACAAAGATAAATCTATCTTTTTGTTTATGGCCATACAGATCGGCTTGCCTTGAAGTAGGCTAT
GATCTTCGAAATTTCCGAGTCATGTGCGATGGTTAAATTCCAATTGGCAATGAGTCATAAGAACG
AGCCAATCTTGAATGTATTAAAGTGGTATGACAACACATAAATACA
Found at i:77053319 original size:29 final size:29
Alignment explanation
Indices: 77053286--77053349 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
77053276 TAATCCACCA
77053286 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
77053315 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
77053345 CCCAA
1 CCCAA
77053350 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:77053323 original size:30 final size:30
Alignment explanation
Indices: 77053293--77053349 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
77053283 CCACCCAACT
77053293 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
77053322 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
77053350 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:77068145 original size:23 final size:21
Alignment explanation
Indices: 77068119--77068160 Score: 66
Period size: 23 Copynumber: 1.9 Consensus size: 21
77068109 AATGCAATAT
77068119 TAAAAATGCTAACTAAAATGTCC
1 TAAAAATGC-AAC-AAAATGTCC
77068142 TAAAAATGCAACAAAATGT
1 TAAAAATGCAACAAAATGT
77068161 TACTTAAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 7 0.37
22 3 0.16
23 9 0.47
ACGTcount: A:0.52, C:0.14, G:0.10, T:0.24
Consensus pattern (21 bp):
TAAAAATGCAACAAAATGTCC
Found at i:77073185 original size:30 final size:30
Alignment explanation
Indices: 77073149--77073211 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
77073139 ATATAAAGAC
77073149 TAAGAATAAAATTTAACCTTAAAATATTAA
1 TAAGAATAAAATTTAACCTTAAAATATTAA
77073179 TAAGAATAAAATTTAACCTTAAAATATTAA
1 TAAGAATAAAATTTAACCTTAAAATATTAA
77073209 TAA
1 TAA
77073212 TACATAAAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.57, C:0.06, G:0.03, T:0.33
Consensus pattern (30 bp):
TAAGAATAAAATTTAACCTTAAAATATTAA
Found at i:77075762 original size:2 final size:2
Alignment explanation
Indices: 77075755--77075808 Score: 67
Period size: 2 Copynumber: 28.0 Consensus size: 2
77075745 TTTGATGTAT
* * *
77075755 TA TA TA TA TA TA TA TC TA TA TA TC TA TA TA TA TA TA AA TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
77075796 TA TA -A TA TA TA TA
1 TA TA TA TA TA TA TA
77075809 AAAAAATTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
1 2 0.05
2 42 0.95
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:77075819 original size:18 final size:20
Alignment explanation
Indices: 77075780--77075820 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
77075770 CTATATATCT
*
77075780 ATATATATATAAATAATATA
1 ATATATATATAAAAAATATA
77075800 ATATATATA-AAAAAAT-TA
1 ATATATATATAAAAAATATA
77075818 ATA
1 ATA
77075821 CGGGCGGGCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 5 0.25
19 6 0.30
20 9 0.45
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
ATATATATATAAAAAATATA
Found at i:77077891 original size:27 final size:26
Alignment explanation
Indices: 77077843--77077936 Score: 89
Period size: 26 Copynumber: 3.6 Consensus size: 26
77077833 AAAGTAAACA
*
77077843 ATAAAACAATTTAAAATGAATAATAC
1 ATAAAACAATTTAAAATAAATAATAC
**
77077869 ATAAAACAAGTTTAAAATAAATAATGT
1 ATAAAACAA-TTTAAAATAAATAATAC
* * **
77077896 ATAAAGCATTTTAAAATCTATAATAC
1 ATAAAACAATTTAAAATAAATAATAC
* * *
77077922 ACAAAGCAAATTAAA
1 ATAAAACAATTTAAA
77077937 GAATGACATA
Statistics
Matches: 55, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
26 34 0.62
27 21 0.38
ACGTcount: A:0.59, C:0.09, G:0.05, T:0.28
Consensus pattern (26 bp):
ATAAAACAATTTAAAATAAATAATAC
Found at i:77078009 original size:27 final size:26
Alignment explanation
Indices: 77077957--77078006 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
77077947 TATGAATAGT
*
77077957 TTTAAAATAAATAATATATAAGTTAA
1 TTTAAAATAAATAATATAGAAGTTAA
*
77077983 TTTAAAAGTAATTAATA-AGAAGTT
1 TTTAAAA-TAAATAATATAGAAGTT
77078007 TAAAATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 13 0.62
27 8 0.38
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (26 bp):
TTTAAAATAAATAATATAGAAGTTAA
Found at i:77091721 original size:41 final size:40
Alignment explanation
Indices: 77091616--77091731 Score: 115
Period size: 41 Copynumber: 2.8 Consensus size: 40
77091606 CCTGCTAAAC
* *
77091616 TTTTTGCGGCGTTTGGACAAAAAACGCCGCTATTAATCAGT
1 TTTTTGTGGCGTTTGGAC-AAAAACGCCGCAATTAATCAGT
** ** * * * *
77091657 TTTTAATGGTATTTTGAATAAAAACGCCACAATTGATCAGT
1 TTTTTGTGG-CGTTTGGACAAAAACGCCGCAATTAATCAGT
77091698 TTTTTGTGGCGTTTGGGACAAAAACGCCGCAATT
1 TTTTTGTGGCGTTT-GGACAAAAACGCCGCAATT
77091732 TAGTGGCGTT
Statistics
Matches: 56, Mismatches: 17, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
40 3 0.05
41 48 0.86
42 5 0.09
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (40 bp):
TTTTTGTGGCGTTTGGACAAAAACGCCGCAATTAATCAGT
Found at i:77091802 original size:40 final size:40
Alignment explanation
Indices: 77091730--77091880 Score: 162
Period size: 41 Copynumber: 3.8 Consensus size: 40
77091720 AACGCCGCAA
*
77091730 TTTAGTGGCG-TTTGAGATTAAAACGCCTCTATTGATCAGCT
1 TTTAGTGGCGTTTTGAGA--AAAACGCCGCTATTGATCAGCT
* *
77091771 TTTAGTGGCGTTTTGAGAAAAACGCCGCTATTGACCAGTT
1 TTTAGTGGCGTTTTGAGAAAAACGCCGCTATTGATCAGCT
** * * *
77091811 TTTAGTGGCGTTTTTGCCAAAAACGCCGCTATAGTTTAGCT
1 TTTAGTGGCG-TTTTGAGAAAAACGCCGCTATTGATCAGCT
* * *
77091852 TTTAGTGGCATTTCG-GACAAACGCCGCTA
1 TTTAGTGGCGTTTTGAGAAAAACGCCGCTA
77091881 ATGTATATTA
Statistics
Matches: 94, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
39 12 0.13
40 33 0.35
41 42 0.45
42 7 0.07
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.34
Consensus pattern (40 bp):
TTTAGTGGCGTTTTGAGAAAAACGCCGCTATTGATCAGCT
Found at i:77091833 original size:112 final size:113
Alignment explanation
Indices: 77091636--77091839 Score: 275
Period size: 112 Copynumber: 1.8 Consensus size: 113
77091626 GTTTGGACAA
* * * *
77091636 AAAACGCCGCTATTAATCAGTTTTTAATGGTATTTTGAATAAAAACGCCACAATTGATCAGTTTT
1 AAAACGCCGCTATTAATCAGCTTTTAATGGCATTTTGAAGAAAAACGCCACAATTGACCAGTTTT
*
77091701 TTGTGGCGTTTGGGACAAAAACGCCGCAATTTAGTGGCGTTTGAGATT
66 TAGTGGCGTTTGGGACAAAAACGCCGCAATTTAGTGGCGTTTGAGATT
* * * * * *
77091749 AAAACGCCTCTATTGATCAGCTTTTAGTGGCGTTTTG-AGAAAAACGCCGCTATTGACCAGTTTT
1 AAAACGCCGCTATTAATCAGCTTTTAATGGCATTTTGAAGAAAAACGCCACAATTGACCAGTTTT
** *
77091813 TAGTGGCGTTTTTGCCAAAAACGCCGC
66 TAGTGGCGTTTGGGACAAAAACGCCGC
77091840 TATAGTTTAG
Statistics
Matches: 77, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
112 46 0.60
113 31 0.40
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (113 bp):
AAAACGCCGCTATTAATCAGCTTTTAATGGCATTTTGAAGAAAAACGCCACAATTGACCAGTTTT
TAGTGGCGTTTGGGACAAAAACGCCGCAATTTAGTGGCGTTTGAGATT
Found at i:77093014 original size:16 final size:16
Alignment explanation
Indices: 77092993--77093061 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
77092983 TTTGGTTCGC
77092993 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
77093009 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
77093025 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
77093042 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
77093058 TGTA
1 TGTA
77093062 ATAGCTAATC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:77093039 original size:33 final size:32
Alignment explanation
Indices: 77092993--77093061 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
77092983 TTTGGTTCGC
77092993 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
77093025 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGTGTATTGGATTAGAGG
77093058 TGTA
1 TGTA
77093062 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 6 0.17
33 30 0.83
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTGGATTAGAGG
Found at i:77093126 original size:44 final size:45
Alignment explanation
Indices: 77093042--77093132 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
77093032 GGATTAGAGG
* * *
77093042 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
77093087 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
77093131 TG
1 TG
77093133 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:77093318 original size:18 final size:19
Alignment explanation
Indices: 77093297--77093333 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
77093287 TTATTATTAA
77093297 ATAT-ATTT-TAATTAAAAT
1 ATATAATTTATAA-TAAAAT
77093315 ATATAATTTATAATAAAAT
1 ATATAATTTATAATAAAAT
77093334 TCTTAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.24
19 10 0.59
20 3 0.18
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
ATATAATTTATAATAAAAT
Found at i:77093441 original size:59 final size:58
Alignment explanation
Indices: 77093375--77093560 Score: 157
Period size: 59 Copynumber: 3.1 Consensus size: 58
77093365 CTCAAATCAT
* *
77093375 AATATATGATACTATAAAATATAATTTGAAATAATTAATATTAAATATATTTTAATTAA
1 AATATATGATACTATAAAATATAATTT-AAATAATTATTATTAAATATATTTTAATAAA
* * * * *
77093434 AATATATGAT-TTAATAAAATTCTTAATATTAAAT-ATTCTTATATGAAT-T-TTCTAA-AATCA
1 AATATATGATACT-ATAAAA-T-ATAAT-TTAAATAATTATTAT-TAAATATATTTTAATAA--A
* **
77093494 TAATATATAATACTATAAAATATAATTTAACATAATTATTATTAAATATAAGTTAATAAA
1 -AATATATGATACTATAAAATATAATTTAA-ATAATTATTATTAAATATATTTTAATAAA
77093554 AATATAT
1 AATATAT
77093561 AATTTATCAT
Statistics
Matches: 98, Mismatches: 15, Indels: 28
0.70 0.11 0.20
Matches are distributed among these distances:
58 6 0.06
59 38 0.39
60 19 0.19
61 30 0.31
62 5 0.05
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.42
Consensus pattern (58 bp):
AATATATGATACTATAAAATATAATTTAAATAATTATTATTAAATATATTTTAATAAA
Found at i:77093498 original size:120 final size:120
Alignment explanation
Indices: 77093277--77093566 Score: 456
Period size: 120 Copynumber: 2.4 Consensus size: 120
77093267 TTAATCATAT
77093277 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTATAATAAAATTCTTAATA
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAA-TT-TAATAAAATTCTTAATA
* * *
77093342 ATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
64 ATAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* * *
77093399 TTTGAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAT
1 TTT-AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAA
*
77093463 TAAATATTCTTATATGAATTTTCTAAAATCATAATATATAATACTATAAAATATAA
65 TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
** *
77093519 TTTAACATAATTATTATTAAATATAAGTTAATAAAAATATATAATTTA
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTA
77093567 TCATCATACT
Statistics
Matches: 154, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
119 2 0.01
120 109 0.71
121 2 0.01
122 39 0.25
123 2 0.01
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (120 bp):
TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
Found at i:77114828 original size:44 final size:46
Alignment explanation
Indices: 77114777--77114869 Score: 129
Period size: 44 Copynumber: 2.1 Consensus size: 46
77114767 TACAACATCT
* *
77114777 ATTCCATTCAACTAAACACA-AGAATT-CT-ATTACAGCTCTATTTC
1 ATTCCATTCAACCAAACA-ATAGAATTACTAATTACAGCTCTATTCC
*
77114821 ATTCCATTCAACCAAACAATTGAATTACTAATTACAGCTCTATTCC
1 ATTCCATTCAACCAAACAATAGAATTACTAATTACAGCTCTATTCC
77114867 ATT
1 ATT
77114870 ACATCTCTAT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
43 1 0.02
44 22 0.51
45 2 0.05
46 18 0.42
ACGTcount: A:0.37, C:0.25, G:0.04, T:0.34
Consensus pattern (46 bp):
ATTCCATTCAACCAAACAATAGAATTACTAATTACAGCTCTATTCC
Found at i:77114872 original size:16 final size:16
Alignment explanation
Indices: 77114851--77114904 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
77114841 TGAATTACTA
77114851 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
* *
77114867 ATTACATCTCTATTCA
1 ATTACAGCTCTATTCC
*
77114883 ATTACAGCCCTATTCC
1 ATTACAGCTCTATTCC
77114899 ATTACA
1 ATTACA
77114905 ATAAACCAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.30, C:0.30, G:0.04, T:0.37
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:77117116 original size:39 final size:40
Alignment explanation
Indices: 77117015--77117317 Score: 390
Period size: 40 Copynumber: 7.7 Consensus size: 40
77117005 TTGAATGATG
* *
77117015 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
77117054 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
77117095 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
77117134 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
77117173 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
77117212 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
77117252 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
77117291 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
77117318 AACGAGTAGC
Statistics
Matches: 243, Mismatches: 12, Indels: 16
0.90 0.04 0.06
Matches are distributed among these distances:
39 114 0.47
40 116 0.48
41 12 0.05
42 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:77117164 original size:78 final size:81
Alignment explanation
Indices: 77117015--77117317 Score: 403
Period size: 78 Copynumber: 3.8 Consensus size: 81
77117005 TTGAATGATG
* * *
77117015 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAG-TCCCGAAGGCA
77117077 TTTGTGCGAGATACTAAT
64 TTTGTGCGAGATACTAAT
77117095 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGTCCCGAAGGCAT
77117156 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAT
*
77117173 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGTTACTAA-ATCCGGGTTAAGTCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGTCCCGAAGGCAT
* *
77117235 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAT
* * * *
77117252 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGTCCCGAAGGCATT
77117316 TG
66 TG
77117318 AACGAGTAGC
Statistics
Matches: 202, Mismatches: 12, Indels: 18
0.87 0.05 0.08
Matches are distributed among these distances:
78 74 0.37
79 60 0.30
80 67 0.33
81 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGTCCCGAAGGCATT
TGTGCGAGATACTAAT
Found at i:77128922 original size:17 final size:17
Alignment explanation
Indices: 77128879--77128923 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 17
77128869 AAATTTATGA
*
77128879 AAATG-ATGGTAT-ATG
1 AAATGAATGATATAATG
*
77128894 AAAT-ATTGATATAATG
1 AAATGAATGATATAATG
77128910 AAATGAATGATATA
1 AAATGAATGATATA
77128924 TGTTTATGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
15 9 0.38
16 7 0.29
17 8 0.33
ACGTcount: A:0.49, C:0.00, G:0.18, T:0.33
Consensus pattern (17 bp):
AAATGAATGATATAATG
Found at i:77129221 original size:13 final size:13
Alignment explanation
Indices: 77129203--77129228 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
77129193 CTCAAGAGAA
77129203 AATATGCTAATGC
1 AATATGCTAATGC
77129216 AATATGCTAATGC
1 AATATGCTAATGC
77129229 TCACGAAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
AATATGCTAATGC
Found at i:77133968 original size:43 final size:42
Alignment explanation
Indices: 77133836--77133999 Score: 195
Period size: 42 Copynumber: 3.9 Consensus size: 42
77133826 TTAGGGTTAC
* * *
77133836 TGAGATTACGTGTAAGACCATATCTAGGATATGGCTTCGGTA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
* * * *
77133878 TGAAACTT-TGTATAAGACCATATTTGGGATATGGCATCGATA
1 TGAGA-TTACGTGTAAGACCATATCTGGGATATGGCATCGATA
* * *
77133920 TGAGATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATA-TGGCATCGATA
* *
77133963 CGAGATTACATGTAAGACCATATCTGGGATATGGCAT
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCAT
77134000 TGGTATAGTA
Statistics
Matches: 101, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
41 2 0.02
42 60 0.59
43 39 0.39
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:77139833 original size:43 final size:42
Alignment explanation
Indices: 77139708--77139858 Score: 169
Period size: 42 Copynumber: 3.6 Consensus size: 42
77139698 ACTTAGTTTA
* *
77139708 CGTGTAAGACCATATCTGGGATATTGTATCGATATGAGACTTT
1 CGTGTAAGACCATATCTAGGATATTGCATCGATATGAGA-TTT
* * * *
77139751 -TTATAAGACCATATCTAGGATATGGCATCGATATAAGATTT
1 CGTGTAAGACCATATCTAGGATATTGCATCGATATGAGATTT
* * *
77139792 CGTGTAAGACCATAGCTAGGTTATTAGCATCGATATGAGATTA
1 CGTGTAAGACCATATCTAGGATATT-GCATCGATATGAGATTT
* * *
77139835 CATGTAAGACCATATATGGGATAT
1 CGTGTAAGACCATATCTAGGATAT
77139859 GACATTGGTA
Statistics
Matches: 88, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
41 3 0.03
42 51 0.58
43 34 0.39
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.32
Consensus pattern (42 bp):
CGTGTAAGACCATATCTAGGATATTGCATCGATATGAGATTT
Found at i:77146175 original size:17 final size:18
Alignment explanation
Indices: 77146145--77146183 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
77146135 GAGCACTAGA
*
77146145 TAATTTTATAAATTGTAT
1 TAATTTTATAAATTATAT
77146163 TAATTTT-TAAATTATAT
1 TAATTTTATAAATTATAT
77146180 TAAT
1 TAAT
77146184 AATAAGTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (18 bp):
TAATTTTATAAATTATAT
Done.