Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 234 of 322
Found at i:77895057 original size:80 final size:79
Alignment explanation
Indices: 77894973--77895144 Score: 211
Period size: 79 Copynumber: 2.2 Consensus size: 79
77894963 GGACTAAGAT
*
77894973 CCGAAGGCATTTGTGCGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATGACAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
77895037 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * ** * * * *
77895053 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATGACAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
77895118 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
77895132 CCGAAGGCATTTG
1 CCGAAGGCATTTG
77895145 AACGAGGAGC
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 38 0.49
80 37 0.47
81 3 0.04
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATGACAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:77895124 original size:39 final size:39
Alignment explanation
Indices: 77894920--77895142 Score: 200
Period size: 40 Copynumber: 5.6 Consensus size: 39
77894910 TTGAATGCTG
* * * * *
77894920 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
77894960 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
77894999 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* **
77895040 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
77895080 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
77895119 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
77895143 TGAACGAGGA
Statistics
Matches: 155, Mismatches: 20, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
39 39 0.25
40 102 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:77895162 original size:79 final size:80
Alignment explanation
Indices: 77895000--77895177 Score: 198
Period size: 79 Copynumber: 2.2 Consensus size: 80
77894990 AGATACAAAT
* * * *
77895000 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** ** *
77895065 GTGCGAGTTGTTAAA
66 GAACGAGGAGCTAAA
* * * * *
77895080 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
77895144 GAACGAGGAGCTATA
66 GAACGAGGAGCTAAA
*
77895159 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
77895178 TACGTGATTT
Statistics
Matches: 81, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 14 0.17
79 49 0.60
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGGAGCTAAA
Found at i:77902914 original size:40 final size:39
Alignment explanation
Indices: 77902883--77903092 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
77902873 GGACTAAGAT
* *
77902883 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
77902923 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
77902963 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
77903003 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
77903043 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
77903082 CCGAAGGCATT
1 CCGAAGGCATT
77903093 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:77903046 original size:120 final size:120
Alignment explanation
Indices: 77902830--77903092 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
77902820 TTGAATGCTG
* *
77902830 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
77902894 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
77902950 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
77903013 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
77903069 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
77903093 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:77903112 original size:79 final size:80
Alignment explanation
Indices: 77902831--77903127 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
77902821 TGAATGCTGT
* ** * * * **
77902831 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
77902894 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
77902911 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
77902975 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
77902991 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
77903055 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
77903070 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
77903128 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:77909540 original size:79 final size:82
Alignment explanation
Indices: 77909429--77909613 Score: 231
Period size: 79 Copynumber: 2.3 Consensus size: 82
77909419 GCTACTCGTT
* *
77909429 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
* *
77909491 CGGATTTAGTAAC-TCGCA
64 CGGATATAGTAACTTAGCA
**
77909509 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTATCTCGCACAAATGCCTTCGGATCTTAACCCG
* *
77909572 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
77909589 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77909614 CATCATTCAA
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
78 5 0.05
79 53 0.58
80 34 0.37
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTATCTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:77909613 original size:40 final size:40
Alignment explanation
Indices: 77909410--77909613 Score: 215
Period size: 40 Copynumber: 5.1 Consensus size: 40
77909400 CGGAATTTAA
** *
77909410 CCGGATATAGCTAC-TCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TACTTCGCACAAATGCCTTCGGGACTTAGC
* * *
77909450 CCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTACTTCGCACAAATGCCTTCGGGACTTAGC
*
77909490 CCGGATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGT-ACTTCGCACAAATGCCTTCGGGACTTAGC
*
77909529 CCGGA-ATTAGTA-TCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTACT-TCGCACAAATGCCTTCGGGA-CTTAGC
* *
77909569 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGT-ACTTCGCACAAATGCCTTCGGGACTTAGC
77909609 CCGGA
1 CCGGA
77909614 CATCATTCAA
Statistics
Matches: 138, Mismatches: 15, Indels: 22
0.79 0.09 0.13
Matches are distributed among these distances:
38 3 0.02
39 32 0.23
40 88 0.64
41 14 0.10
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTACTTCGCACAAATGCCTTCGGGACTTAGC
Found at i:77917454 original size:40 final size:40
Alignment explanation
Indices: 77917417--77917600 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
77917407 GCTACTCGTT
*
77917417 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
77917457 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
77917497 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
77917536 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
77917577 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
77917601 ACATCATTCG
Statistics
Matches: 122, Mismatches: 14, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 76 0.62
41 14 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:77917519 original size:79 final size:81
Alignment explanation
Indices: 77917384--77917601 Score: 238
Period size: 79 Copynumber: 2.8 Consensus size: 81
77917374 AAATCACGTA
** * *
77917384 CCTTCGGAAT-TTAA-CCGGATATAGCT-ACTC-GTTCAAATGCCTTCGGGACATAGCCCGG-TT
1 CCTTCGG-ATCTTAACCCGGATATAG-TAACTCAGCACAAATGCCTTCGGGACTTAGCCCGGAAT
77917444 ATAGTAACTCGCACAAATG
64 -TAGTAACTCGCACAAATG
*
77917463 CCTTCGGGA-CTTAACCCGGATTTAGTAACTCA-CACAAATGCCTTCGGG-CTTAGCCCGGAATT
1 CCTTC-GGATCTTAACCCGGATATAGTAACTCAGCACAAATGCCTTCGGGACTTAGCCCGGAATT
*
77917525 AGTATCTCGCACAAATG
65 AGTAACTCGCACAAATG
** * * *
77917542 CCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCTTCGGATCTTAACCCGGATATAGTAACTCAGCACAAATGCCTTCGGGACTTAGCCCGGA
77917602 CATCATTCGA
Statistics
Matches: 118, Mismatches: 12, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
78 3 0.03
79 68 0.58
80 47 0.40
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CCTTCGGATCTTAACCCGGATATAGTAACTCAGCACAAATGCCTTCGGGACTTAGCCCGGAATTA
GTAACTCGCACAAATG
Found at i:77918796 original size:56 final size:56
Alignment explanation
Indices: 77918729--77918960 Score: 446
Period size: 56 Copynumber: 4.1 Consensus size: 56
77918719 TATTAGTTTA
* *
77918729 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTGATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
77918785 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
77918841 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
77918897 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
77918953 TTGCCCAT
1 TTGCCCAT
77918961 CATCCCTTGT
Statistics
Matches: 174, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 174 1.00
ACGTcount: A:0.23, C:0.22, G:0.09, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:77922833 original size:101 final size:100
Alignment explanation
Indices: 77922708--77922922 Score: 295
Period size: 101 Copynumber: 2.1 Consensus size: 100
77922698 ACCCAGAATC
* * * ** *
77922708 TCACACGCCTGTGTAGTCTTACTCAGTGTAGCCTGTGTCTCGCACACGGCCTATTTGGCTACCAC
1 TCACACGCCTGTGTAGTCTCACTCAGTGTAGCCCGTGTCTAGCACACGGCCTACCTGGCCACCAC
*
77922773 ACAGCCGTGTCATGCGTGCACAGCCTGGCTCGTCGA
66 A-AGCAGTGTCATGCGTGCACAGCCTGGCTCGTCGA
* * *
77922809 TCACACGCCCGTGTAGTCTCACTCAGTGTAGCCCGTGTCTAGCAGACGGCCTACCTGGCCATCAC
1 TCACACGCCTGTGTAGTCTCACTCAGTGTAGCCCGTGTCTAGCACACGGCCTACCTGGCCACCAC
* * * *
77922874 AGGCAGTGTCATGCGTGGACGGCCTGGCTCGTTGA
66 AAGCAGTGTCATGCGTGCACAGCCTGGCTCGTCGA
77922909 TCACACGCCTGTGT
1 TCACACGCCTGTGT
77922923 TCCATCACAC
Statistics
Matches: 99, Mismatches: 15, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
100 42 0.42
101 57 0.58
ACGTcount: A:0.17, C:0.33, G:0.27, T:0.24
Consensus pattern (100 bp):
TCACACGCCTGTGTAGTCTCACTCAGTGTAGCCCGTGTCTAGCACACGGCCTACCTGGCCACCAC
AAGCAGTGTCATGCGTGCACAGCCTGGCTCGTCGA
Found at i:77924226 original size:26 final size:25
Alignment explanation
Indices: 77924197--77924265 Score: 102
Period size: 26 Copynumber: 2.7 Consensus size: 25
77924187 TAATGATGAA
77924197 ATTAGGGTTATGTGCAAAAGTTATAT
1 ATTAGGGTTATGTGCAAAA-TTATAT
* *
77924223 ATTAGGGTTATGATCCCAAATTATAT
1 ATTAGGGTTATG-TGCAAAATTATAT
77924249 ATTAGGGTTATGTGCAA
1 ATTAGGGTTATGTGCAA
77924266 GAGAGGGTCA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
25 3 0.08
26 30 0.79
27 5 0.13
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.38
Consensus pattern (25 bp):
ATTAGGGTTATGTGCAAAATTATAT
Found at i:77944552 original size:54 final size:54
Alignment explanation
Indices: 77944453--77944597 Score: 220
Period size: 54 Copynumber: 2.7 Consensus size: 54
77944443 TGGAGGAAGC
*
77944453 GTCCTGGTGGCTATGCCACAATTTATCTAATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAA-TTATCTGATCTGGTGGCTCTGCCACATATATCT
*
77944508 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * *
77944562 GTTCTGGTGGCTCTGCCATAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
77944598 ACTTCGTCAC
Statistics
Matches: 84, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
53 6 0.07
54 57 0.68
55 21 0.25
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:77944594 original size:27 final size:27
Alignment explanation
Indices: 77944456--77944615 Score: 159
Period size: 27 Copynumber: 5.9 Consensus size: 27
77944446 AGGAAGCGTC
* *
77944456 CTGGTGGCTATGCCACAATTTATCT-AAT
1 CTGGTGGCTCTGCCACAA--TATCTGTAT
*
77944484 CTGGTGGCTCTGCCACATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
*
77944511 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
*
77944538 CTGGTGGCTCTGCCACATATTTCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
*
77944565 CTGGTGGCTCTGCCATAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
77944592 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
77944616 GCAGCCTCGC
Statistics
Matches: 112, Mismatches: 12, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
26 9 0.08
27 85 0.76
28 17 0.15
29 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:77944609 original size:81 final size:81
Alignment explanation
Indices: 77944456--77944615 Score: 193
Period size: 81 Copynumber: 2.0 Consensus size: 81
77944446 AGGAAGCGTC
*
77944456 CTGGTGGCTATGCCACAATTTATCTAATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTA
1 CTGGTGGCTATGCCACAATTTATCTAATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTA
77944521 TGCCACAATTATCTGAT
66 TGCCACAA-TATCTGAT
* ** * *
77944538 CTGGTGGCTCTGCCAC-ATATT-TCTGTTCTGGTGGCTCTGCCATA-ATATCTGTATCTGGTGAC
1 CTGGTGGCTATGCCACAAT-TTATCTAATCTGGTGGCTCTGCCACATATATCTGT-CCTGGTGAC
*
77944600 T-TCGTCACAATATCTG
64 TAT-GCCACAATATCTG
77944616 GCAGCCTCGC
Statistics
Matches: 68, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
80 15 0.22
81 36 0.53
82 17 0.25
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (81 bp):
CTGGTGGCTATGCCACAATTTATCTAATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTA
TGCCACAATATCTGAT
Found at i:77951323 original size:23 final size:22
Alignment explanation
Indices: 77951295--77951338 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
77951285 TTATTAGTTA
77951295 AAATTTTCAAAA-AAAAAGTTGTT
1 AAATTTT-AAAAGAAAAA-TTGTT
77951318 AAATTTTAAAAGAAAAATTGT
1 AAATTTTAAAAGAAAAATTGT
77951339 GTTTATTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.55, C:0.02, G:0.09, T:0.34
Consensus pattern (22 bp):
AAATTTTAAAAGAAAAATTGTT
Found at i:77951333 original size:22 final size:23
Alignment explanation
Indices: 77951295--77951338 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
77951285 TTATTAGTTA
*
77951295 AAATTTTCAAAAAAAAAGTTGTT
1 AAATTTTCAAAAAAAAAATTGTT
*
77951318 AAATTTT-AAAAGAAAAATTGT
1 AAATTTTCAAAAAAAAAATTGT
77951339 GTTTATTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.55, C:0.02, G:0.09, T:0.34
Consensus pattern (23 bp):
AAATTTTCAAAAAAAAAATTGTT
Found at i:77953519 original size:27 final size:27
Alignment explanation
Indices: 77953481--77953535 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 27
77953471 TTGTTATGGG
*
77953481 CCCAGTGATCATT-CTCGGTAGGGAGGA
1 CCCAGTGATCATTCCT-GATAGGGAGGA
77953508 CCCAGTGATCATTCCTGATAGGGAGGA
1 CCCAGTGATCATTCCTGATAGGGAGGA
77953535 C
1 C
77953536 TTTTGCAACG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 24 0.92
28 2 0.08
ACGTcount: A:0.24, C:0.24, G:0.31, T:0.22
Consensus pattern (27 bp):
CCCAGTGATCATTCCTGATAGGGAGGA
Found at i:77959503 original size:49 final size:49
Alignment explanation
Indices: 77959422--77960362 Score: 1759
Period size: 49 Copynumber: 19.3 Consensus size: 49
77959412 TATTTGAATA
77959422 AATGTGAAAGTGTATA--TATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
77959469 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
77959518 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
77959567 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
77959616 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
77959665 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
77959714 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
77959763 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
77959812 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
77959861 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
77959910 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
77959959 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
77960008 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
77960057 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
77960106 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
77960155 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
77960204 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
77960253 AATGTGAAAGTGTATA--TATGTGCTAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
77960300 AATGTGAAAGTGTATA--TATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
*
77960347 GATGTGAAAGTGTATA
1 AATGTGAAAGTGTATA
77960363 AATGTGATAA
Statistics
Matches: 884, Mismatches: 8, Indels: 4
0.99 0.01 0.00
Matches are distributed among these distances:
47 102 0.12
49 782 0.88
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (49 bp):
AATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:77963005 original size:47 final size:44
Alignment explanation
Indices: 77962895--77963008 Score: 122
Period size: 48 Copynumber: 2.5 Consensus size: 44
77962885 TTATTTGTGT
* * *
77962895 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGAACATGAATCGG-C-CATTACGAGA
*
77962941 GCCAGTGTAAGACCATGTCTGGAACATGGAATCGG-CATTGAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGAACAT-GAATCGGCCATT---ACGAGA
77962989 GCTAGTGTAAGACATGTCTG
1 GCTAGTGTAAGACATGTCTG
77963009 AGACATGCAT
Statistics
Matches: 58, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
45 4 0.07
46 11 0.19
47 21 0.36
48 22 0.38
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (44 bp):
GCTAGTGTAAGACATGTCTGGAACATGAATCGGCCATTACGAGA
Found at i:77963062 original size:94 final size:94
Alignment explanation
Indices: 77962895--77963117 Score: 233
Period size: 94 Copynumber: 2.4 Consensus size: 94
77962885 TTATTTGTGT
* * * *
77962895 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGAGACATGCATCGGCCACATGATGAGAACCACTGTAAGACCATGTC
77962960 TGGAACATGGAATCGGCATTGAGACGAGA
66 TGGAACATGGAATCGGCATTGAGACGAGA
* * *
77962989 GCTAGTGTAAGACATGTCTGAGACATGCATTGGCCTCGA-GATGTA-AACTACTGTAAGACCATG
1 GCTAGTGTAAGACATGTCTGAGACATGCATCGGCCAC-ATGATG-AGAACCACTGTAAGACCATG
* * *
77963052 TCTAGG-ACATGGCATCGAC-TTCATG--GATGA
64 TCT-GGAACATGGAATCGGCATTGA-GACGA-GA
* *
77963082 CCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GCTAGTGTAAGA-CATGTCTGAGACAT-GCATCGGC
77963118 ATTATACCAT
Statistics
Matches: 109, Mismatches: 13, Indels: 13
0.81 0.10 0.10
Matches are distributed among these distances:
92 2 0.02
93 16 0.15
94 80 0.73
95 11 0.10
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGAGACATGCATCGGCCACATGATGAGAACCACTGTAAGACCATGTC
TGGAACATGGAATCGGCATTGAGACGAGA
Found at i:77963687 original size:13 final size:13
Alignment explanation
Indices: 77963669--77963697 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
77963659 GGTTGTTTAT
77963669 TAAACTAATTAAC
1 TAAACTAATTAAC
77963682 TAAACTAATTAAC
1 TAAACTAATTAAC
77963695 TAA
1 TAA
77963698 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:77965162 original size:17 final size:19
Alignment explanation
Indices: 77965120--77965163 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
77965110 ACGAAATTTT
*
77965120 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
77965139 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
77965157 AA-TATTA
1 AATTATTA
77965164 CTGCATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:77965276 original size:15 final size:15
Alignment explanation
Indices: 77965258--77965286 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
77965248 ATATTTTTAA
77965258 AATTATTATTATTAT
1 AATTATTATTATTAT
77965273 AATTATTATTATTA
1 AATTATTATTATTA
77965287 GATAGGGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
AATTATTATTATTAT
Found at i:77967666 original size:60 final size:59
Alignment explanation
Indices: 77967589--77967725 Score: 170
Period size: 60 Copynumber: 2.3 Consensus size: 59
77967579 AACTATGTTA
* *
77967589 ATATGGGCAAGGCCCAATATA-TCTCGACT-TGTAATAGGGCTACGGCCCAGATTGATACTG
1 ATATGGGCTAGGCCCAATATACTCT-GA-TATGTAA-AGGGCTACGGCCCAGATTAATACTG
* * *
77967649 ATATGGGCTAGGCCCAATATACTCTGATACTGTAAGGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATACTCTGATA-TGTAAAGGGCTACGGCCCAGATTAATACTG
77967709 ATATGGGCTAAGGCCCA
1 ATATGGGCT-AGGCCCA
77967726 GTTAACACTG
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
59 1 0.01
60 52 0.76
61 15 0.22
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (59 bp):
ATATGGGCTAGGCCCAATATACTCTGATATGTAAAGGGCTACGGCCCAGATTAATACTG
Found at i:77970159 original size:6 final size:6
Alignment explanation
Indices: 77970150--77970190 Score: 82
Period size: 6 Copynumber: 6.8 Consensus size: 6
77970140 TATATCTTTC
77970150 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
77970191 GATAGGAGGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:77972762 original size:44 final size:44
Alignment explanation
Indices: 77972688--77972776 Score: 124
Period size: 44 Copynumber: 2.0 Consensus size: 44
77972678 TACTCCTCAT
* * * *
77972688 TCCTGCTATCAATCTCCTCAGAATAAGGTTTTAATCGGGTGTTG
1 TCCTGCTATCAATCTCATAAAAATAAGGTTTTAATCGGATGTTG
* *
77972732 TCCTGCTATCAATCTCATAAAAATAGGGTTTTAATTGGATGTTG
1 TCCTGCTATCAATCTCATAAAAATAAGGTTTTAATCGGATGTTG
77972776 T
1 T
77972777 TTACCTTAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (44 bp):
TCCTGCTATCAATCTCATAAAAATAAGGTTTTAATCGGATGTTG
Found at i:77975686 original size:13 final size:13
Alignment explanation
Indices: 77975668--77975696 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
77975658 GGTTGTTTAT
77975668 TAAACTAATTAAC
1 TAAACTAATTAAC
77975681 TAAACTAATTAAC
1 TAAACTAATTAAC
77975694 TAA
1 TAA
77975697 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:77978771 original size:14 final size:14
Alignment explanation
Indices: 77978737--77978765 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
77978727 TGGTCGAAGG
77978737 TCCAAAAGAATCAA
1 TCCAAAAGAATCAA
77978751 TCCAAAAGAATCAA
1 TCCAAAAGAATCAA
77978765 T
1 T
77978766 GTAAAACTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.55, C:0.21, G:0.07, T:0.17
Consensus pattern (14 bp):
TCCAAAAGAATCAA
Found at i:77990610 original size:40 final size:40
Alignment explanation
Indices: 77990537--77990612 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
77990527 CTAGAATGAT
* *
77990537 TTTCGCACACTTAGTGCCTCATACAGCCGAAGCTATACCA
1 TTTCGCACACTTAGTGCCTAATACAGCCAAAGCTATACCA
* *
77990577 TTTCTCACACTTAGTG-CTAATTATAGCCAAAGCTAT
1 TTTCGCACACTTAGTGCCTAA-TACAGCCAAAGCTAT
77990613 TTTGAATCGA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.10
40 28 0.90
ACGTcount: A:0.29, C:0.28, G:0.13, T:0.30
Consensus pattern (40 bp):
TTTCGCACACTTAGTGCCTAATACAGCCAAAGCTATACCA
Found at i:78004707 original size:30 final size:30
Alignment explanation
Indices: 78004671--78004728 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
78004661 CACCAGGGGA
*
78004671 CACATGGCTAAGCCACACGCCCGTGTCTCG
1 CACATGGCTAAGACACACGCCCGTGTCTCG
78004701 CACATGGCTAAGACACACGCCCGTGTCT
1 CACATGGCTAAGACACACGCCCGTGTCT
78004729 TTTCTCGTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.22, C:0.38, G:0.22, T:0.17
Consensus pattern (30 bp):
CACATGGCTAAGACACACGCCCGTGTCTCG
Found at i:78007494 original size:50 final size:50
Alignment explanation
Indices: 78007435--78007531 Score: 185
Period size: 50 Copynumber: 1.9 Consensus size: 50
78007425 TTTAATTAAT
*
78007435 TGGGTGAAGAAAGTGTTGTTTTTGGTGGTGCTTCTACCTTCTAACTTTTG
1 TGGGTGAAGAAAGTGTTATTTTTGGTGGTGCTTCTACCTTCTAACTTTTG
78007485 TGGGTGAAGAAAGTGTTATTTTTGGTGGTGCTTCTACCTTCTAACTT
1 TGGGTGAAGAAAGTGTTATTTTTGGTGGTGCTTCTACCTTCTAACTT
78007532 GTGTAGGTTA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.18, C:0.12, G:0.27, T:0.43
Consensus pattern (50 bp):
TGGGTGAAGAAAGTGTTATTTTTGGTGGTGCTTCTACCTTCTAACTTTTG
Found at i:78009573 original size:17 final size:15
Alignment explanation
Indices: 78009531--78009578 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
78009521 GTTTTAATCT
**
78009531 TAAAAATTCAAAAAA
1 TAAAAATTTTAAAAA
*
78009546 CAAAAATTTTAAAAA
1 TAAAAATTTTAAAAA
78009561 TAAAAATTATTTAAAAA
1 TAAAAA-T-TTTAAAAA
78009578 T
1 T
78009579 TCATTTTTCA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
15 17 0.63
16 1 0.04
17 9 0.33
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (15 bp):
TAAAAATTTTAAAAA
Found at i:78011696 original size:30 final size:30
Alignment explanation
Indices: 78011662--78011723 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
78011652 CTTAACAAGT
78011662 AAATGCCTCTAAAATAATAA-AAAATTTAAC
1 AAATGCCTCTAAAATAATAACAAAA-TTAAC
*
78011692 AAATGCCTTTAAAATAATAACAAAATTAAC
1 AAATGCCTCTAAAATAATAACAAAATTAAC
78011722 AA
1 AA
78011724 GAAAATAAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 26 0.87
31 4 0.13
ACGTcount: A:0.58, C:0.13, G:0.03, T:0.26
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAACAAAATTAAC
Found at i:78012833 original size:13 final size:13
Alignment explanation
Indices: 78012812--78012882 Score: 79
Period size: 13 Copynumber: 5.5 Consensus size: 13
78012802 AAATTTTTCC
78012812 AAAGCACTTCTCA
1 AAAGCACTTCTCA
*
78012825 AAAGTACTTCTCA
1 AAAGCACTTCTCA
* *
78012838 AAAGCACTTTTCC
1 AAAGCACTTCTCA
* *
78012851 ACAGCACTTTTCA
1 AAAGCACTTCTCA
*
78012864 AAAGCACTTTTCA
1 AAAGCACTTCTCA
*
78012877 GAAGCA
1 AAAGCA
78012883 ATGAAGAACT
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 50 1.00
ACGTcount: A:0.37, C:0.27, G:0.10, T:0.27
Consensus pattern (13 bp):
AAAGCACTTCTCA
Found at i:78012857 original size:39 final size:39
Alignment explanation
Indices: 78012806--78012882 Score: 109
Period size: 39 Copynumber: 2.0 Consensus size: 39
78012796 ACACTTAAAT
*
78012806 TTTTCCAAAGCACTTCTCAAAAGTACTTCTCAAAAGCAC
1 TTTTCCAAAGCACTTCTCAAAAGCACTTCTCAAAAGCAC
* * * *
78012845 TTTTCCACAGCACTTTTCAAAAGCACTTTTCAGAAGCA
1 TTTTCCAAAGCACTTCTCAAAAGCACTTCTCAAAAGCA
78012883 ATGAAGAACT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.34, C:0.27, G:0.09, T:0.30
Consensus pattern (39 bp):
TTTTCCAAAGCACTTCTCAAAAGCACTTCTCAAAAGCAC
Found at i:78017966 original size:6 final size:6
Alignment explanation
Indices: 78017936--78018013 Score: 54
Period size: 6 Copynumber: 12.8 Consensus size: 6
78017926 AAGAAACATT
* * *
78017936 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCA-A ATTTAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA A-TCAGA ATCAGA
* *
78017983 GTGACAGA ATCAGA ATCAGA ATCAGT ATCAG
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAG
78018014 GTAACAAATT
Statistics
Matches: 56, Mismatches: 9, Indels: 14
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.07
6 45 0.80
7 6 0.11
8 1 0.02
ACGTcount: A:0.47, C:0.14, G:0.18, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:78018013 original size:31 final size:31
Alignment explanation
Indices: 78017957--78018015 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
78017947 AATCAAAATG
*
78017957 AGAATCAGAATCAAATTTAGAATCAGGTGAC
1 AGAATCAGAATCAAATTCAGAATCAGGTGAC
*
78017988 AGAATCAGAATCAGAA-TCAGTATCAGGT
1 AGAATCAGAATCA-AATTCAGAATCAGGT
78018016 AACAAATTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 23 0.92
32 2 0.08
ACGTcount: A:0.44, C:0.14, G:0.20, T:0.22
Consensus pattern (31 bp):
AGAATCAGAATCAAATTCAGAATCAGGTGAC
Found at i:78022518 original size:33 final size:33
Alignment explanation
Indices: 78022476--78022543 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
78022466 ATAACTTAAG
78022476 TCCCAATTGGAACTTGACATGTGTCACACTCTT
1 TCCCAATTGGAACTTGACATGTGTCACACTCTT
* *
78022509 TCCCAATTGGAACTTGATATGTGTCATACTCTT
1 TCCCAATTGGAACTTGACATGTGTCACACTCTT
78022542 TC
1 TC
78022544 AAAAATATCT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.37
Consensus pattern (33 bp):
TCCCAATTGGAACTTGACATGTGTCACACTCTT
Found at i:78046908 original size:31 final size:31
Alignment explanation
Indices: 78046856--78046938 Score: 118
Period size: 31 Copynumber: 2.7 Consensus size: 31
78046846 TCAATCTCGA
78046856 CATAT-ACTGGGCTGAAGCCTTTTCATAAAT
1 CATATCACTGGGCTGAAGCCTTTTCATAAAT
*
78046886 CATATCACTGGGCCT-AATCCTTTTCATAAAT
1 CATATCACTGGG-CTGAAGCCTTTTCATAAAT
*
78046917 CATATCACT-GGCCGAAGCCTTT
1 CATATCACTGGGCTGAAGCCTTT
78046939 ACTGTAAGCG
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
29 1 0.02
30 14 0.30
31 30 0.64
32 2 0.04
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (31 bp):
CATATCACTGGGCTGAAGCCTTTTCATAAAT
Found at i:78047186 original size:25 final size:25
Alignment explanation
Indices: 78047158--78047227 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
78047148 CTCTTTTAAT
*
78047158 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
78047183 AACTGGGGCAAAACCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
78047208 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
78047228 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:78048174 original size:27 final size:27
Alignment explanation
Indices: 78048144--78048256 Score: 122
Period size: 27 Copynumber: 4.2 Consensus size: 27
78048134 GGTATTTCAA
**
78048144 TAATTTTGTAAATCAGGGGTATTTTGG
1 TAATTTTACAAATCAGGGGTATTTTGG
* **
78048171 TAATTTTACAAAT-TGAGGGTATTTCAG
1 TAATTTTACAAATCAG-GGGTATTTTGG
* * *
78048198 TAATTTCACAAATGAGTGGTATTTTGG
1 TAATTTTACAAATCAGGGGTATTTTGG
78048225 TAATTTTACAAA-CTAGGGGTATTTTGG
1 TAATTTTACAAATC-AGGGGTATTTTGG
78048252 TAATT
1 TAATT
78048257 CTATCCTACA
Statistics
Matches: 70, Mismatches: 13, Indels: 6
0.79 0.15 0.07
Matches are distributed among these distances:
26 1 0.01
27 68 0.97
28 1 0.01
ACGTcount: A:0.30, C:0.06, G:0.21, T:0.42
Consensus pattern (27 bp):
TAATTTTACAAATCAGGGGTATTTTGG
Found at i:78048245 original size:54 final size:54
Alignment explanation
Indices: 78048106--78048248 Score: 153
Period size: 54 Copynumber: 2.6 Consensus size: 54
78048096 CATCTTACAA
* * * * ** ***
78048106 GGGTGTTTTGGTAAATCTACAAACCAAAGGTATTTCAATAATTTTGTAAATCAG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCAATAATTTCACAAATCAG
* * *
78048160 GGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCAGTAATTTCACAAATGAG
1 GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCAATAATTTCACAAATCAG
*
78048214 TGGTATTTTGGTAATTTTACAAACTAGGGGTATTT
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTT
78048249 TGGTAATTCT
Statistics
Matches: 73, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
54 71 0.97
55 2 0.03
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.39
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCAATAATTTCACAAATCAG
Found at i:78048296 original size:27 final size:27
Alignment explanation
Indices: 78048134--78048296 Score: 68
Period size: 27 Copynumber: 6.0 Consensus size: 27
78048124 ACAAACCAAA
* **
78048134 GGTATTTCAATAATTTTGTAAATC-AGG
1 GGTATTTCAGTAATTTCAT-AATCGAGG
** *
78048161 GGTATTTTGGTAATTTTACA-AATTGA-G
1 GGTATTTCAGTAA-TTT-CATAATCGAGG
* *
78048188 GGTATTTCAGTAATTTCACAAAT-GAGT
1 GGTATTTCAGTAATTTCA-TAATCGAGG
** * * * *
78048215 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTCAGTAATTTCATAATCGAGG
** **
78048242 GGTATTTTGGTAA-TTCTATCCTAC-AGG
1 GGTATTTCAGTAATTTC-ATAAT-CGAGG
78048269 GGTATTTCAGTAATTTCATAATCGAGG
1 GGTATTTCAGTAATTTCATAATCGAGG
78048296 G
1 G
78048297 TGAAACAGTA
Statistics
Matches: 100, Mismatches: 25, Indels: 22
0.68 0.17 0.15
Matches are distributed among these distances:
25 2 0.02
26 10 0.10
27 80 0.80
28 8 0.08
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
GGTATTTCAGTAATTTCATAATCGAGG
Found at i:78048389 original size:27 final size:27
Alignment explanation
Indices: 78048278--78048404 Score: 114
Period size: 27 Copynumber: 4.7 Consensus size: 27
78048268 GGGTATTTCA
* * **
78048278 GTAATTTCAT-AATCGAGGGTGAAACA
1 GTAATTTTATAAATCGAGGGTAAAATG
*
78048304 GTAATTTTGTAAA-CTGAGGGTAAAATG
1 GTAATTTTATAAATC-GAGGGTAAAATG
*
78048331 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
* * ***
78048358 ATAATTCTATAAATCGAGGGTACTTTG
1 GTAATTTTATAAATCGAGGGTAAAATG
* *
78048385 GTAATTTTACAAGTCGAGGG
1 GTAATTTTATAAATCGAGGG
78048405 CATTTCAATA
Statistics
Matches: 83, Mismatches: 15, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
26 9 0.11
27 73 0.88
28 1 0.01
ACGTcount: A:0.35, C:0.08, G:0.24, T:0.32
Consensus pattern (27 bp):
GTAATTTTATAAATCGAGGGTAAAATG
Found at i:78051321 original size:40 final size:41
Alignment explanation
Indices: 78051261--78051352 Score: 132
Period size: 41 Copynumber: 2.3 Consensus size: 41
78051251 TTTATTGGAG
* *
78051261 ATATTATCAGGCTTTGTGCCTAGCA-GCTTTGTGCCAATGT
1 ATATAATCAGGCTTTATGCCTAGCAGGCTTTGTGCCAATGT
* **
78051301 ATATAATCAGGCTTTATGCCTAGTAGGCTTTGTGCCGGTGT
1 ATATAATCAGGCTTTATGCCTAGCAGGCTTTGTGCCAATGT
78051342 ATATAATCAGG
1 ATATAATCAGG
78051353 ATTGGTGCCG
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
40 22 0.48
41 24 0.52
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.36
Consensus pattern (41 bp):
ATATAATCAGGCTTTATGCCTAGCAGGCTTTGTGCCAATGT
Found at i:78056044 original size:40 final size:40
Alignment explanation
Indices: 78055943--78056127 Score: 235
Period size: 40 Copynumber: 4.6 Consensus size: 40
78055933 TATTCGAATG
* * * *
78055943 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCT-AGCGACT
* * * **
78055984 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
* *
78056024 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
* * *
78056064 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGCGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
78056104 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
78056128 CTTGTGCAAG
Statistics
Matches: 124, Mismatches: 20, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
40 96 0.77
41 28 0.23
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
Found at i:78056108 original size:80 final size:79
Alignment explanation
Indices: 78055943--78056163 Score: 257
Period size: 80 Copynumber: 2.8 Consensus size: 79
78055933 TATTCGAATG
* *
78055943 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGATTATATCCGGACTAAGAT-CCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCT-AGTGATTATATCCGGGCTAAG-TCCCGAAGG
* ** *
78056007 CATTTGTGCGAGTTACT
63 CATTTATGCGAGCGACC
* * * *
78056024 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCA
*
78056089 TTTATGCTAGCGACC
65 TTTATGCGAGCGACC
* * * *
78056104 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTGGTTATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAG
78056164 ATACTTGGGT
Statistics
Matches: 119, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
78 14 0.12
79 17 0.14
80 59 0.50
81 29 0.24
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCAT
TTATGCGAGCGACC
Found at i:78059047 original size:28 final size:29
Alignment explanation
Indices: 78058992--78059054 Score: 92
Period size: 28 Copynumber: 2.2 Consensus size: 29
78058982 TACTAGAATA
*
78058992 CCCTGATGTATGCAAAAATTACCATTATAC
1 CCCT-ATGTATGCAAAAATGACCATTATAC
*
78059022 CCCTATGTATGC-AAAATGACCTTTATAC
1 CCCTATGTATGCAAAAATGACCATTATAC
78059050 CCCTA
1 CCCTA
78059055 GGGTTAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
28 19 0.61
29 8 0.26
30 4 0.13
ACGTcount: A:0.33, C:0.27, G:0.10, T:0.30
Consensus pattern (29 bp):
CCCTATGTATGCAAAAATGACCATTATAC
Found at i:78059222 original size:27 final size:27
Alignment explanation
Indices: 78059160--78059249 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
78059150 AGAAAGCGTC
*
78059160 CTGGTGGCTA-TGCCACAAATTATATGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
78059188 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
78059215 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
78059244 CTGGTG
1 CTGGTG
78059250 ACTCTGTCAC
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
27 22 0.41
28 25 0.46
29 7 0.13
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:78059260 original size:29 final size:28
Alignment explanation
Indices: 78059170--78059260 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
78059160 CTGGTGGCTA
* * * *
78059170 TGCCACAAATTATATGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
* *
78059198 TGCCAC-ATATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
78059225 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
78059254 TGTCACA
1 TGCCACA
78059261 TTTTCTGTAT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
27 23 0.43
28 15 0.28
29 15 0.28
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:78059268 original size:55 final size:56
Alignment explanation
Indices: 78059160--78059274 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
78059150 AGAAAGCGTC
* *
78059160 CTGGTGGCTATGCCACAAATTATATGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATATGTTCTGGTGACCCTGCCACATATATCTGTAT
* * * *
78059215 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATATGT-TCTGGTGACCCTGCCACATATATCTGTAT
78059271 CTGG
1 CTGG
78059275 CAGCAATGCA
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.57
56 21 0.41
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATATGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:78059739 original size:19 final size:19
Alignment explanation
Indices: 78059715--78059753 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
78059705 TTAATTATTT
* *
78059715 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
78059734 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
78059753 T
1 T
78059754 ATGATGAAAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:78060711 original size:17 final size:17
Alignment explanation
Indices: 78060689--78060721 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
78060679 TGGGAGAATG
78060689 AATATTATCCCAAAGAT
1 AATATTATCCCAAAGAT
78060706 AATATTATCCCAAAGA
1 AATATTATCCCAAAGA
78060722 GATTAAGGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.48, C:0.18, G:0.06, T:0.27
Consensus pattern (17 bp):
AATATTATCCCAAAGAT
Found at i:78063281 original size:47 final size:49
Alignment explanation
Indices: 78063171--78063291 Score: 130
Period size: 47 Copynumber: 2.6 Consensus size: 49
78063161 ACTTATGTGA
*
78063171 GCTAGTGTAAGACATGTCTGGGACAT-GTATCAGCCATATTATGAGAGC
1 GCTAGTGTAAGACATGTCTGGGACATGGTATCAGCCATATGATGAGAGC
* *
78063219 -C-AGTGTAAGACCATGTCTGGGACATGGTAT-TGGCAT-TGA-GACGAGC
1 GCTAGTGTAAGA-CATGTCTGGGACATGGTATCAGCCATATGATGA-GAGC
*
78063265 GCTAATGTAAGACATGTCTAGGG-CATG
1 GCTAGTGTAAGACATGTCT-GGGACATG
78063292 CATTGGCCTC
Statistics
Matches: 63, Mismatches: 4, Indels: 13
0.79 0.05 0.16
Matches are distributed among these distances:
45 2 0.03
46 15 0.24
47 31 0.49
48 15 0.24
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.26
Consensus pattern (49 bp):
GCTAGTGTAAGACATGTCTGGGACATGGTATCAGCCATATGATGAGAGC
Found at i:78063320 original size:46 final size:44
Alignment explanation
Indices: 78063270--78063390 Score: 124
Period size: 46 Copynumber: 2.7 Consensus size: 44
78063260 CGAGCGCTAA
*
78063270 TGTAAGACATGTCTAGGG-CATGCATTGGCCTCA-AAATGTAAGCCAG
1 TGTAAGACATGTCTAGGGACATGCATCGG-CT-AGAAATGT--GCCAG
*
78063316 TGTAAGACATGTCT-GGGACATGCATCGGCTATGAAATGTGTCAG
1 TGTAAGACATGTCTAGGGACATGCATCGGCTA-GAAATGTGCCAG
*
78063360 TGTAAGACCATGTCTA-GGATATGGCATCGGC
1 TGTAAGA-CATGTCTAGGGACAT-GCATCGGC
78063391 AACTTACCCC
Statistics
Matches: 66, Mismatches: 3, Indels: 12
0.81 0.04 0.15
Matches are distributed among these distances:
44 12 0.18
45 17 0.26
46 37 0.56
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (44 bp):
TGTAAGACATGTCTAGGGACATGCATCGGCTAGAAATGTGCCAG
Found at i:78077271 original size:23 final size:23
Alignment explanation
Indices: 78077231--78077276 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
78077221 ATTCATTGAT
*
78077231 TCATTTACATAGTAATCACATAC
1 TCATTTAAATAGTAATCACATAC
78077254 TCATTTAAATA-TATATCACATAC
1 TCATTTAAATAGTA-ATCACATAC
78077277 ATATATTGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 2 0.10
23 19 0.90
ACGTcount: A:0.41, C:0.20, G:0.02, T:0.37
Consensus pattern (23 bp):
TCATTTAAATAGTAATCACATAC
Found at i:78080577 original size:53 final size:53
Alignment explanation
Indices: 78080497--78080599 Score: 188
Period size: 53 Copynumber: 1.9 Consensus size: 53
78080487 TAGCTCGGAC
*
78080497 GAGTATTCCTATTGACCTTATTATAGAAAGGATTTAGCCCGAATGGGTAAGAT
1 GAGTATTCCTATTGACCTCATTATAGAAAGGATTTAGCCCGAATGGGTAAGAT
*
78080550 GAGTATTCCTATTGACCTCATTATAGAAAGGATTTAGCTCGAATGGGTAA
1 GAGTATTCCTATTGACCTCATTATAGAAAGGATTTAGCCCGAATGGGTAA
78080600 TCCTGATATA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (53 bp):
GAGTATTCCTATTGACCTCATTATAGAAAGGATTTAGCCCGAATGGGTAAGAT
Found at i:78084049 original size:6 final size:6
Alignment explanation
Indices: 78084040--78084119 Score: 65
Period size: 6 Copynumber: 13.0 Consensus size: 6
78084030 AATTAGGTGA
* *
78084040 CAGAAT CAGAAT CAGAAT CAGTAT CAGGTAA- CAGAAT CAAAAT CAGAAT
1 CAGAAT CAGAAT CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT CAGAAT
* * *
78084089 CAGTAT CAGGTAA- CAAAAT CAAAAT CAGAAT
1 CAGAAT CA-G-AAT CAGAAT CAGAAT CAGAAT
78084120 GTGAATGCAA
Statistics
Matches: 60, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
5 4 0.07
6 48 0.80
7 6 0.10
8 2 0.03
ACGTcount: A:0.50, C:0.16, G:0.15, T:0.19
Consensus pattern (6 bp):
CAGAAT
Found at i:78084051 original size:31 final size:31
Alignment explanation
Indices: 78084018--78084119 Score: 150
Period size: 31 Copynumber: 3.3 Consensus size: 31
78084008 TCAGAACTAG
* * * * *
78084018 AATCGGAATCAGAATTAGGTGACAGAATCAG
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
78084049 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
*
78084080 AATCAGAATCAGTATCAGGTAACAAAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
78084111 AATCAGAAT
1 AATCAGAAT
78084120 GTGAATGCAA
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 65 1.00
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.20
Consensus pattern (31 bp):
AATCAGAATCAGTATCAGGTAACAGAATCAA
Found at i:78084286 original size:27 final size:26
Alignment explanation
Indices: 78084238--78084289 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
78084228 GCGAGGCTGC
*
78084238 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
78084264 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
78084290 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:78084685 original size:27 final size:27
Alignment explanation
Indices: 78084638--78084978 Score: 420
Period size: 27 Copynumber: 12.7 Consensus size: 27
78084628 AAATTCGGGT
*
78084638 AGGGGTATTT-AGT-ATTCCTACCCTAC
1 AGGGGTATTTCGGTAATT-CTACCCTAC
*
78084664 AAGGGTATTTCGGTAATTCTA-CCTGAC
1 AGGGGTATTTCGGTAATTCTACCCT-AC
* *
78084691 AGGGGTATTTCAGTAATTTTACCCTAC
1 AGGGGTATTTCGGTAATTCTACCCTAC
* *
78084718 AGGGGTATTTCGATAATTCTACCGTAC
1 AGGGGTATTTCGGTAATTCTACCCTAC
* * *
78084745 AGGGCTATTTCGATAATTCTACCATAC
1 AGGGGTATTTCGGTAATTCTACCCTAC
78084772 AGGGGTATTTCGGTAATTCTACCCTAC
1 AGGGGTATTTCGGTAATTCTACCCTAC
* *
78084799 AGGGGTATTTCAGTAATTCTACCATAC
1 AGGGGTATTTCGGTAATTCTACCCTAC
* *
78084826 AGGGCTATTTCGGTAATTCTACCATAC
1 AGGGGTATTTCGGTAATTCTACCCTAC
*
78084853 AGGGGTATTTCGGTAATTCTACCTTAC
1 AGGGGTATTTCGGTAATTCTACCCTAC
* *
78084880 AGGGGTATTTCAGTAATTCTACACTAC
1 AGGGGTATTTCGGTAATTCTACCCTAC
* *
78084907 AGGGGTA-TTCTGGTAATTTTACCTTAC
1 AGGGGTATTTC-GGTAATTCTACCCTAC
* ** * *
78084934 ATGGGTATTTTAGTAATTCTACCTTAT
1 AGGGGTATTTCGGTAATTCTACCCTAC
78084961 AGGGGTATTTCGGTAATT
1 AGGGGTATTTCGGTAATT
78084979 TTACAAATCG
Statistics
Matches: 274, Mismatches: 35, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
26 15 0.05
27 251 0.92
28 8 0.03
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (27 bp):
AGGGGTATTTCGGTAATTCTACCCTAC
Found at i:78085047 original size:26 final size:26
Alignment explanation
Indices: 78084962--78085059 Score: 108
Period size: 27 Copynumber: 3.7 Consensus size: 26
78084952 CTACCTTATA
*
78084962 GGGGTATTTCGGTAATTTTACAAATCG
1 GGGGTATTTCGGTAATTTTACAACT-G
* * * *
78084989 AGGATATTTGGGTAATTTTATAAACTG
1 GGGGTATTTCGGTAATTTTA-CAACTG
78085016 GGGGTACTTT-GGTAATTTTACAACTG
1 GGGGTA-TTTCGGTAATTTTACAACTG
*
78085042 GGGGTATTTCAGTAATTT
1 GGGGTATTTCGGTAATTT
78085060 GGTAAACTAA
Statistics
Matches: 59, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
25 3 0.05
26 18 0.31
27 32 0.54
28 6 0.10
ACGTcount: A:0.27, C:0.08, G:0.26, T:0.40
Consensus pattern (26 bp):
GGGGTATTTCGGTAATTTTACAACTG
Found at i:78085067 original size:27 final size:25
Alignment explanation
Indices: 78085000--78085059 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 25
78084990 GGATATTTGG
*
78085000 GTAATTTTATAAACTGGGGGTACTTTG
1 GTAA-TTT-TAAACTGGGGGTACTTTA
78085027 GTAATTTTACAACTGGGGGTA-TTTCA
1 GTAATTTTA-AACTGGGGGTACTTT-A
78085053 GTAATTT
1 GTAATTT
78085060 GGTAAACTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
25 5 0.17
26 21 0.70
27 4 0.13
ACGTcount: A:0.27, C:0.08, G:0.23, T:0.42
Consensus pattern (25 bp):
GTAATTTTAAACTGGGGGTACTTTA
Found at i:78086090 original size:27 final size:26
Alignment explanation
Indices: 78086055--78086166 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
78086045 AGCATGGCTG
* *
78086055 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
78086081 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
78086109 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
78086136 CCAGATCAGGTAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
78086163 CCAG
1 CCAG
78086167 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 6 0.08
27 52 0.69
28 17 0.23
ACGTcount: A:0.37, C:0.23, G:0.25, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:78086156 original size:54 final size:54
Alignment explanation
Indices: 78086055--78086166 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
78086045 AGCATGGCTG
* *
78086055 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * * *
78086109 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGGTAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
78086163 CCAG
1 CCAG
78086167 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.37, C:0.23, G:0.25, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:78089947 original size:6 final size:6
Alignment explanation
Indices: 78089929--78089991 Score: 58
Period size: 6 Copynumber: 10.3 Consensus size: 6
78089919 AAGAAACATT
* *
78089929 ATCAGA A-CTAGA ATCAGA ATTAGA ATCAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
78089978 ATCAAA ATCAGA AT
1 ATCAGA ATCAGA AT
78089992 GTGAATGCAA
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
5 3 0.07
6 38 0.83
7 4 0.09
8 1 0.02
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:78090452 original size:27 final size:27
Alignment explanation
Indices: 78090432--78090842 Score: 556
Period size: 27 Copynumber: 15.2 Consensus size: 27
78090422 GGGTTTCTCG
78090432 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
78090459 GT-ATTCCTACCCTACAAGAGTATTTCT
1 GTAATT-CTACCCTACAGGGGTATTTCA
78090486 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
78090513 GTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
78090540 GTAATTCTAGCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
78090567 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
78090594 GTAATTCTACCTTACAAGGATATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
78090620 GATAATTCTACCCTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
* * *
78090648 GTAATTCTACCATATAGAGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
78090675 GTAATTCTACCTTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
78090702 GTAATTCTACCTTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
78090729 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
78090756 GTAATTCTACACTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
78090783 GTAATTTTACCTTACAGAGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
78090810 GTAATTCTACCTTACAGGGGTTTTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
78090837 GTAATT
1 GTAATT
78090843 TTACAAATCG
Statistics
Matches: 341, Mismatches: 39, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
26 4 0.01
27 333 0.98
28 4 0.01
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:78095477 original size:29 final size:29
Alignment explanation
Indices: 78095445--78095602 Score: 178
Period size: 29 Copynumber: 5.4 Consensus size: 29
78095435 AGCCAAGGCT
*
78095445 ATCCCTTTTCATATTCGATGGTCGTCATC
1 ATCCCTTTTCATATTCGATGGTCGTCACC
*
78095474 ATCCCTTTTCATAATT-GATGGTCGTCACT
1 ATCCCTTTTCAT-ATTCGATGGTCGTCACC
* * * * *
78095503 ATCCTTTTTCATAATT-GATAGTTG-AAGCT
1 ATCCCTTTTCAT-ATTCGATGGTCGTCA-CC
*
78095532 ATCCCTTTTCATATTCGATGGTTGTCACC
1 ATCCCTTTTCATATTCGATGGTCGTCACC
*
78095561 ATCCATTTTCATATTCGATGGTCGTCACC
1 ATCCCTTTTCATATTCGATGGTCGTCACC
*
78095590 ATCCTTTTTCATA
1 ATCCCTTTTCATA
78095603 ATCATTAGCC
Statistics
Matches: 112, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
28 4 0.04
29 104 0.93
30 4 0.04
ACGTcount: A:0.21, C:0.24, G:0.13, T:0.42
Consensus pattern (29 bp):
ATCCCTTTTCATATTCGATGGTCGTCACC
Found at i:78095512 original size:87 final size:86
Alignment explanation
Indices: 78095421--78095630 Score: 278
Period size: 87 Copynumber: 2.4 Consensus size: 86
78095411 GAGCAATAGC
* *
78095421 TTTTCATAATCAATAGCCAAGGCTATCCCTTTTCATATTCGATGGTCGTCATCATCCCTTTTCAT
1 TTTTCATAATCAATAGCCAA-GCTATCCCTTTTCATATTCGATGGTCGTCACCATCCATTTTCAT
*
78095486 AATT-GATGGTCGTCACTATCCT
65 -ATTCGATGGTCGTCACCATCCT
** ** *
78095508 TTTTCATAATTGATAGTTGAAGCTATCCCTTTTCATATTCGATGGTTGTCACCATCCATTTTCAT
1 TTTTCATAATCAATAG-CCAAGCTATCCCTTTTCATATTCGATGGTCGTCACCATCCATTTTCAT
78095573 ATTCGATGGTCGTCACCATCCT
65 ATTCGATGGTCGTCACCATCCT
* * *
78095595 TTTTCATAATCATTAGCCGAAGCTGTCTCTTTTCAT
1 TTTTCATAATCAATAGCC-AAGCTATCCCTTTTCAT
78095631 TAGTTGATGA
Statistics
Matches: 105, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
86 3 0.03
87 100 0.95
88 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.41
Consensus pattern (86 bp):
TTTTCATAATCAATAGCCAAGCTATCCCTTTTCATATTCGATGGTCGTCACCATCCATTTTCATA
TTCGATGGTCGTCACCATCCT
Found at i:78109836 original size:163 final size:163
Alignment explanation
Indices: 78109557--78109887 Score: 592
Period size: 163 Copynumber: 2.0 Consensus size: 163
78109547 GAGTGGAATT
78109557 AATT-AATGAATAAATTATGTAATCGAAGCTCGATGAGTCTATTTTCATATAGAAGAAACGAAAC
1 AATTAAATGAATAAATTATGTAATCGAAGCTCGATGAGTCTATTTTCATATAGAAGAAACGAAAC
*
78109621 GACCATATGAGCTGTATGTTAGGAGATAATTAAACTCTTGTGAGACAGGGCCAGAGCGATTTCTG
66 GACCATATGAGCTGTATGTTAGGAGATAATTAAACTCTTGTGAAACAGGGCCAGAGCGATTTCTG
*
78109686 GGTTCCCTGTTCCGACTTTGGAAATTCATTATA
131 GGTTCCCTGTTCCGACTTTGGAAATTAATTATA
* *
78109719 AATTAAATGAATAAATTATGTAATCGAATCTCGATGAGTCTATTTTCATATAGAAGAAATGAAAC
1 AATTAAATGAATAAATTATGTAATCGAAGCTCGATGAGTCTATTTTCATATAGAAGAAACGAAAC
* *
78109784 GACCATATGAGCTGTATGTTAGGAGATAATTAAACTCTTGTGAAATAGGGCCAGAGCGATTTTTG
66 GACCATATGAGCTGTATGTTAGGAGATAATTAAACTCTTGTGAAACAGGGCCAGAGCGATTTCTG
*
78109849 GGTTCCCTGTTCTGACTTTGGAAATTAATTATA
131 GGTTCCCTGTTCCGACTTTGGAAATTAATTATA
78109882 AATTAA
1 AATTAA
78109888 CCAGAGATAA
Statistics
Matches: 161, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
162 4 0.02
163 157 0.98
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.32
Consensus pattern (163 bp):
AATTAAATGAATAAATTATGTAATCGAAGCTCGATGAGTCTATTTTCATATAGAAGAAACGAAAC
GACCATATGAGCTGTATGTTAGGAGATAATTAAACTCTTGTGAAACAGGGCCAGAGCGATTTCTG
GGTTCCCTGTTCCGACTTTGGAAATTAATTATA
Found at i:78110130 original size:100 final size:101
Alignment explanation
Indices: 78109955--78110159 Score: 376
Period size: 100 Copynumber: 2.0 Consensus size: 101
78109945 CTATATAAAC
* *
78109955 AAACGGCATCAGTATTTAATCTCTGTGCAGGGAGTTATCCAAATCGTAATGCATGAAGGTCAGTG
1 AAACGGCATCAGTATTGAAGCTCTGTGCAGGGAGTTATCCAAATCGTAATGCATGAAGGTCAGTG
78110020 TAGTCACACCCTGTAATAGGGGAGAATTTAACT-AT
66 TAGTCACACCCTGTAATAGGGGAGAATTTAACTAAT
78110055 AAACGGCATCAGTATTGAAGCTCTGTGCAGGGAGTTATCCAAATCGTAATGCATGAAGGTCAGTG
1 AAACGGCATCAGTATTGAAGCTCTGTGCAGGGAGTTATCCAAATCGTAATGCATGAAGGTCAGTG
*
78110120 TAGTCGCACCCTGTAATAGGGGAGAATTTAACTAAT
66 TAGTCACACCCTGTAATAGGGGAGAATTTAACTAAT
78110156 AAAC
1 AAAC
78110160 TGTACTAATT
Statistics
Matches: 101, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
100 95 0.94
101 6 0.06
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (101 bp):
AAACGGCATCAGTATTGAAGCTCTGTGCAGGGAGTTATCCAAATCGTAATGCATGAAGGTCAGTG
TAGTCACACCCTGTAATAGGGGAGAATTTAACTAAT
Found at i:78119821 original size:53 final size:53
Alignment explanation
Indices: 78119625--78119879 Score: 211
Period size: 55 Copynumber: 4.8 Consensus size: 53
78119615 ATTAGGGTTT
*
78119625 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-G-TTCATAAGGC
* * ** * *
78119680 AAGGATATCATGTAAGACCATGTCAAGACATGAAATTGATAAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGG-C
* *
78119736 AAGG-TCCCATGTAAGACCATGCCAAGGA-ATGGCATTGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAA-GACATGGCATTGGTAAGTTCATAAGGC
* *** *
78119788 AAGGAAACCATGTAAGACCATGTTGAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCAT-AAGGC
* * * * *
78119837 AAGTATACCATGTAAGACCATGACAAGTCATGGAAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
78119880 GTACCCATGT
Statistics
Matches: 163, Mismatches: 29, Indels: 22
0.76 0.14 0.10
Matches are distributed among these distances:
49 36 0.22
51 1 0.01
52 10 0.06
53 38 0.23
54 8 0.05
55 64 0.39
56 6 0.04
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:78123059 original size:25 final size:25
Alignment explanation
Indices: 78122985--78123060 Score: 80
Period size: 25 Copynumber: 3.0 Consensus size: 25
78122975 ACCAACACAC
*
78122985 CAGTATCGCAGCAAAGTTGCCAGTAA
1 CAGTATCGCAGCAAAGCTGCCAGT-A
* * * **
78123011 TAATATCGCAGCAAGGCTATCAGTA
1 CAGTATCGCAGCAAAGCTGCCAGTA
*
78123036 CAGTAACGCAGCAAAGCTGCCAGTA
1 CAGTATCGCAGCAAAGCTGCCAGTA
78123061 TTAGTATATG
Statistics
Matches: 38, Mismatches: 12, Indels: 1
0.75 0.24 0.02
Matches are distributed among these distances:
25 20 0.53
26 18 0.47
ACGTcount: A:0.36, C:0.24, G:0.22, T:0.18
Consensus pattern (25 bp):
CAGTATCGCAGCAAAGCTGCCAGTA
Found at i:78123232 original size:26 final size:28
Alignment explanation
Indices: 78123198--78123251 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
78123188 ACCATAGCAC
*
78123198 AAATCAGTCA-CTTACCCTCGAGGGGTA
1 AAATCAGTCATCTTACCCTAGAGGGGTA
* *
78123225 AAAT-AGTCATTTTACCCTATAGGGGTA
1 AAATCAGTCATCTTACCCTAGAGGGGTA
78123252 TTTTGGTGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 5 0.22
27 18 0.78
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.28
Consensus pattern (28 bp):
AAATCAGTCATCTTACCCTAGAGGGGTA
Found at i:78123521 original size:17 final size:18
Alignment explanation
Indices: 78123499--78123532 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
78123489 TCCGTGTGGA
78123499 GCCTACA-AGCCCATTTG
1 GCCTACACAGCCCATTTG
*
78123516 GCCTACACGGCCCATTT
1 GCCTACACAGCCCATTT
78123533 TAGCCCAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.38, G:0.18, T:0.24
Consensus pattern (18 bp):
GCCTACACAGCCCATTTG
Found at i:78131332 original size:43 final size:43
Alignment explanation
Indices: 78131196--78131354 Score: 193
Period size: 43 Copynumber: 3.7 Consensus size: 43
78131186 TGTGTGTTAT
* *
78131196 CGTGTAAGACCACATCTGGGACATTGGCATCGACTTATGTT--TTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGA--TAT-TTGATTA
* *
78131240 CGTATAAGACCACGTCTGGGACGTTGGCATC-ATATTTGATTT
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
78131282 CGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTGATTA
*
78131325 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
78131355 TATATGAGCT
Statistics
Matches: 101, Mismatches: 7, Indels: 15
0.82 0.06 0.12
Matches are distributed among these distances:
40 2 0.02
41 4 0.04
42 29 0.29
43 37 0.37
44 29 0.29
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
Found at i:78137998 original size:31 final size:31
Alignment explanation
Indices: 78137958--78138040 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
78137948 TCAGTCTCGA
78137958 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
78137988 CATATCACTGGGCCTAATCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
78138019 CATATCACT-GGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
78138041 ACTGTAAGCG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
30 16 0.33
31 32 0.67
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:78138288 original size:25 final size:25
Alignment explanation
Indices: 78138260--78138329 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
78138250 CTCTAGTAAT
* *
78138260 AACTGGGGAAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
78138285 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
78138310 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
78138330 GGCACTTCTT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:78139166 original size:27 final size:26
Alignment explanation
Indices: 78139136--78139213 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 26
78139126 GGGCATATTC
*
78139136 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACC-TATAGGGGTATTACG
* *
78139163 GTCACTTTACCCTATAGGGACT-TTACG
1 GTCATTTTA-CCTATAGGG-GTATTACG
*
78139190 GTCTTTTTACCTATTAGGGGTATT
1 GTCATTTTACCTA-TAGGGGTATT
78139214 TTAGTCATTT
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
26 5 0.12
27 33 0.80
28 3 0.07
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.38
Consensus pattern (26 bp):
GTCATTTTACCTATAGGGGTATTACG
Found at i:78139429 original size:54 final size:54
Alignment explanation
Indices: 78139260--78139549 Score: 194
Period size: 54 Copynumber: 5.3 Consensus size: 54
78139250 CTACAAACCA
* * * **
78139260 AGGGTATTTTAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTTTTGAAAGTCA-
1 AGGGTATTTTAGTAATTTTATAAACCAGTGGTATTT-TGGTAA-TTTTACAAA-T-AG
* * * * *
78139316 AGGGTATTTTTGTAATTTTATAAATCAGGGGTATTTTGATAATTTTACAAATTG
1 AGGGTATTTTAGTAATTTTATAAACCAGTGGTATTTTGGTAATTTTACAAATAG
* * *
78139370 AGGGTATTTCAGTAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAACTAG
1 AGGGTATTTTAGTAATTTTATAAACCAGTGGTATTTTGGTAATTTTACAAA-TAG
* * * * ** *
78139425 -GGGTATTTTGGTAATTTTGTAAACCAAGT-GTATTTTAGTAATTATGTAAATCG
1 AGGGTATTTTAGTAATTTTATAAACC-AGTGGTATTTTGGTAATTTTACAAATAG
***** * * * * *
78139478 AGGGTAAAACGGTAATTCTATAAATCGAG-GGTACTTTGGTAATTTTATAAATTG
1 AGGGTATTTTAGTAATTTTATAAA-CCAGTGGTATTTTGGTAATTTTACAAATAG
**
78139532 AGGACATTTTAGTAATTT
1 AGGGTATTTTAGTAATTT
78139550 GGTAAACTAA
Statistics
Matches: 181, Mismatches: 46, Indels: 16
0.74 0.19 0.07
Matches are distributed among these distances:
53 2 0.01
54 130 0.72
55 14 0.08
56 35 0.19
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.41
Consensus pattern (54 bp):
AGGGTATTTTAGTAATTTTATAAACCAGTGGTATTTTGGTAATTTTACAAATAG
Found at i:78139458 original size:81 final size:81
Alignment explanation
Indices: 78139231--78139467 Score: 212
Period size: 81 Copynumber: 2.9 Consensus size: 81
78139221 TTTCATTCTA
* * * * * *
78139231 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTTAGTAATTTTGTAAACCAA-TGGTATT
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGT-GTATT
***
78139295 TCTA-TAATTTTTTGAAAG
65 TC-AGTAA-TTTCACAAAG
* * * ** *** *
78139313 TCAAGGGTATTTTTGTAATTTTATAAA-TCAGGGGTATTTTGATAATTTTACAAATTGAGGGTAT
1 -CAAGGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTGTAAACCAAGTGTAT
78139377 TTCAGTAATTTCACAAA-
64 TTCAGTAATTTCACAAAG
*
78139394 CCAGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGTGTATT
1 CAAG-GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGTGTATT
*
78139459 TTAGTAATT
65 TCAGTAATT
78139468 ATGTAAATCG
Statistics
Matches: 120, Mismatches: 29, Indels: 12
0.75 0.18 0.07
Matches are distributed among these distances:
80 3 0.03
81 57 0.47
82 8 0.07
83 52 0.43
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (81 bp):
CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGTGTATTT
CAGTAATTTCACAAAG
Found at i:78139518 original size:27 final size:27
Alignment explanation
Indices: 78139233--78139549 Score: 174
Period size: 27 Copynumber: 11.7 Consensus size: 27
78139223 TCATTCTACA
* * * * * *
78139233 AGGGTGTTTTGGTAAATCTACAAACCA
1 AGGGTATTTTGGTAATTTTATAAATCG
* * * *
78139260 AGGGTATTTTAGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTATAAATCG
* * * *
78139287 ATGGTATTTCT-ATAATTTTTTGAAAGTCA
1 AGGGTATTT-TGGTAATTTTAT-AAA-TCG
*
78139316 AGGGTATTTTTGTAATTTTATAAATC-
1 AGGGTATTTTGGTAATTTTATAAATCG
* * *
78139342 AGGGGTATTTTGATAATTTTACAAATTG
1 A-GGGTATTTTGGTAATTTTATAAATCG
** * * *
78139370 AGGGTATTTCAGTAATTTCACAAA-CC
1 AGGGTATTTTGGTAATTTTATAAATCG
* *
78139396 AGTGGTATTTTGGTAATTTTACAAA-CT
1 AG-GGTATTTTGGTAATTTTATAAATCG
* * *
78139423 AGGGGTATTTTGGTAATTTTGTAAACCA
1 A-GGGTATTTTGGTAATTTTATAAATCG
* * * *
78139451 AGTGTATTTTAGTAATTATGTAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
**** *
78139478 AGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
* *
78139505 AGGGTACTTTGGTAATTTTATAAATTG
1 AGGGTATTTTGGTAATTTTATAAATCG
** *
78139532 AGGACATTTTAGTAATTT
1 AGGGTATTTTGGTAATTT
78139550 GGTAAACTAA
Statistics
Matches: 228, Mismatches: 53, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
26 3 0.01
27 195 0.86
28 12 0.05
29 18 0.08
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.40
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTATAAATCG
Found at i:78154753 original size:40 final size:40
Alignment explanation
Indices: 78154698--78154778 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
78154688 TAAACATAAC
78154698 CTCATCAAACCCACTAACTAATTTTCCATGGTTCAATTGT
1 CTCATCAAACCCACTAACTAATTTTCCATGGTTCAATTGT
78154738 CTCATCAAACCCACTAACTAATTTTCCATGGTTCAATTGT
1 CTCATCAAACCCACTAACTAATTTTCCATGGTTCAATTGT
78154778 C
1 C
78154779 CATTTAGCCT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (40 bp):
CTCATCAAACCCACTAACTAATTTTCCATGGTTCAATTGT
Found at i:78155569 original size:15 final size:15
Alignment explanation
Indices: 78155549--78155577 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
78155539 GTATTATTGC
78155549 TTGATAACACGTTGA
1 TTGATAACACGTTGA
78155564 TTGATAACACGTTG
1 TTGATAACACGTTG
78155578 TGTGAGGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.34
Consensus pattern (15 bp):
TTGATAACACGTTGA
Found at i:78157259 original size:5 final size:5
Alignment explanation
Indices: 78157249--78157280 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
78157239 ATTATTAAAC
78157249 TAATA TAATA TAATA TAATA TAATA TAATA TA
1 TAATA TAATA TAATA TAATA TAATA TAATA TA
78157281 TTTATTTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TAATA
Found at i:78157288 original size:4 final size:4
Alignment explanation
Indices: 78157279--78157306 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
78157269 TAATATAATA
78157279 TATT TATT TATT TATT TATT TATT TATT
1 TATT TATT TATT TATT TATT TATT TATT
78157307 CTTAAATGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TATT
Found at i:78157463 original size:33 final size:33
Alignment explanation
Indices: 78157395--78157465 Score: 83
Period size: 33 Copynumber: 2.2 Consensus size: 33
78157385 ACAATTGTAT
* * *
78157395 TAATTTAATTTATTTATTTTATATTTATAATAA
1 TAATATAATATATTTATCTTATATTTATAATAA
78157428 TAATATAATATATTTA-CTTATA-TTATAAGTAAA
1 TAATATAATATATTTATCTTATATTTATAA-T-AA
78157461 TAATA
1 TAATA
78157466 ATTACTAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
31 6 0.18
32 6 0.18
33 21 0.64
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (33 bp):
TAATATAATATATTTATCTTATATTTATAATAA
Found at i:78157470 original size:26 final size:28
Alignment explanation
Indices: 78157424--78157476 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
78157414 TATATTTATA
*
78157424 ATAATAATATAATATATTTACTTATATT
1 ATAATAATATAATATATTTACTAATATT
78157452 ATAAGTAA-ATAATA-A-TTACTAATAT
1 ATAA-TAATATAATATATTTACTAATAT
78157477 ATGTTTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 9 0.39
27 1 0.04
28 10 0.43
29 3 0.13
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (28 bp):
ATAATAATATAATATATTTACTAATATT
Found at i:78163378 original size:43 final size:43
Alignment explanation
Indices: 78163313--78163485 Score: 163
Period size: 43 Copynumber: 4.0 Consensus size: 43
78163303 AGCTCGTACA
* * *
78163313 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATATCG
* * * * * * *
78163355 ATGCCACTGTCCCAGACAGGGTCTTACACGAAAGCGA-TTAACG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATC-ACATATCG
** * *
78163398 ATGCCAATGTTTCAGACATGGTCTTACATGTAATCTCA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATAT-CG
* *
78163441 ATGCCAATGTCCCAGACATGGTCTTACATATAATCACATCTCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATATCG
78163484 AT
1 AT
78163486 AACCTAATGT
Statistics
Matches: 99, Mismatches: 27, Indels: 9
0.73 0.20 0.07
Matches are distributed among these distances:
42 6 0.06
43 91 0.92
44 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATATCG
Found at i:78172356 original size:46 final size:45
Alignment explanation
Indices: 78172289--78172451 Score: 152
Period size: 46 Copynumber: 3.5 Consensus size: 45
78172279 CGCCCCTAAG
78172289 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTT-GCATCCATAAA
* * * *
78172335 TGAACTCGGACTCAACTCAACGGGTTCGGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTGCATCCATAAA
* * * * * *
78172382 CGAACCCGAACTCAACTCAACGAGCTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGCTCGGGC-GTTGCATCCATAAA
78172428 TGAACTCGGACTCAACTCAACGAG
1 TGAACTCGGACTCAACTCAACGAG
78172452 TTCAGATGCT
Statistics
Matches: 92, Mismatches: 17, Indels: 16
0.74 0.14 0.13
Matches are distributed among these distances:
43 6 0.07
44 2 0.02
45 1 0.01
46 48 0.52
47 25 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTGCATCCATAAA
Found at i:78184849 original size:40 final size:40
Alignment explanation
Indices: 78184798--78184994 Score: 304
Period size: 40 Copynumber: 4.9 Consensus size: 40
78184788 ATAACCGCAA
* * * *
78184798 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
78184838 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* * *
78184878 GCATAATTGCCTTCGGGTCTTAGCCCAGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
78184918 GCACAAATGCCTTCGGGTTTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
78184958 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
78184995 ATGCTCATGC
Statistics
Matches: 141, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 141 1.00
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:78188772 original size:8 final size:8
Alignment explanation
Indices: 78188759--78188787 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
78188749 AAAAATTAAT
78188759 AATAATAA
1 AATAATAA
78188767 AATAATAA
1 AATAATAA
78188775 AATAATAA
1 AATAATAA
78188783 AATAA
1 AATAA
78188788 AAGAACTAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAATAA
Found at i:78190577 original size:19 final size:18
Alignment explanation
Indices: 78190548--78190587 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
78190538 GTATATATTT
78190548 TAAATTTATTTAGGTAGA
1 TAAATTTATTTAGGTAGA
*
78190566 TAAATCTTATTTGGGTAGA
1 TAAAT-TTATTTAGGTAGA
78190585 TAA
1 TAA
78190588 GTTTTAATTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.38, C:0.03, G:0.17, T:0.42
Consensus pattern (18 bp):
TAAATTTATTTAGGTAGA
Found at i:78190657 original size:43 final size:43
Alignment explanation
Indices: 78190610--78190702 Score: 152
Period size: 43 Copynumber: 2.2 Consensus size: 43
78190600 ATTCTAGAAA
78190610 TATTTT-TATTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
1 TATTTTCT-TTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
* *
78190653 TATTTTCTTTTTATGTTTTAGTAGTTTATTAGAATAAGGGAAC
1 TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
78190696 TATTTTC
1 TATTTTC
78190703 CCAATTAGGA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
43 46 0.98
44 1 0.02
ACGTcount: A:0.28, C:0.06, G:0.14, T:0.52
Consensus pattern (43 bp):
TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
Found at i:78195412 original size:80 final size:79
Alignment explanation
Indices: 78195267--78195438 Score: 188
Period size: 80 Copynumber: 2.2 Consensus size: 79
78195257 ATGTCTGGGC
* **
78195267 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAACGAG
78195332 TTA-CTAAATCCGGGT
66 -TAGCTAAATCC-GGT
* * * * *
78195347 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCATTTGAACG
1 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCATTTGAACG
*
78195410 AGTAGCTATATCCGGT
64 AGTAGCTAAATCCGGT
* *
78195426 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
78195439 TACGTGATTC
Statistics
Matches: 78, Mismatches: 11, Indels: 7
0.81 0.11 0.07
Matches are distributed among these distances:
79 17 0.22
80 54 0.69
81 7 0.09
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAACGAG
TAGCTAAATCCGGT
Found at i:78195419 original size:40 final size:40
Alignment explanation
Indices: 78195263--78195405 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
78195253 AATGATGTCT
* * * *
78195263 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACC
*
78195303 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AATCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
*
78195343 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
*
78195383 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
78195406 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
39 2 0.02
40 77 0.87
41 10 0.11
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
Found at i:78203214 original size:93 final size:93
Alignment explanation
Indices: 78203099--78203921 Score: 1583
Period size: 93 Copynumber: 8.8 Consensus size: 93
78203089 CGCCCATAAG
* * * * *
78203099 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTGAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
78203164 ACGAGTTCGAATGCCAAGTTACATCTCA
66 ACGAGTTCGAATGCCAAGTTACATCTCA
78203192 CGAACTCGGACTCAACTGAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTGAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
78203257 ACGAGTTCGAATGCCAAGTTACATCTCA
66 ACGAGTTCGAATGCCAAGTTACATCTCA
78203285 CGAACTCGGACTCAACTGAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTGAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
78203350 ACGAGTTCGAATGCCAAGTTACATCTCA
66 ACGAGTTCGAATGCCAAGTTACATCTCA
78203378 CGAACTCGGACTCAACTGAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTGAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
78203443 ACGAGTTCGAATGCCAAGTTACATCTCA
66 ACGAGTTCGAATGCCAAGTTACATCTCA
78203471 CGAACTCGGACTCAACTGAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTGAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
78203536 ACGAGTTCGAATGCCAAGTTACATCTCA
66 ACGAGTTCGAATGCCAAGTTACATCTCA
78203564 CGAACTCGGACTCAACTGAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTGAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
78203629 ACGAGTTCGAATGCCAAGTTACATCTCA
66 ACGAGTTCGAATGCCAAGTTACATCTCA
78203657 CGAACTCGGACTCAACTGAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTGAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
78203722 ACGAGTTCGAATGCCAAGTTACATCTCA
66 ACGAGTTCGAATGCCAAGTTACATCTCA
78203750 CGAACTCGGACTCAACTGAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTGAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
78203815 ACGAGTTCGAATGCCAAGTTACATCTCA
66 ACGAGTTCGAATGCCAAGTTACATCTCA
78203843 CGAACTCGGACTCAACTGAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTGAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
78203908 ATGAGTTCGGATGC
66 ACGAGTTCGAATGC
78203922 TCAACCATCC
Statistics
Matches: 723, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 723 1.00
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTGAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGAATGCCAAGTTACATCTCA
Found at i:78211388 original size:46 final size:46
Alignment explanation
Indices: 78211321--78211682 Score: 334
Period size: 46 Copynumber: 7.8 Consensus size: 46
78211311 TGTAACCCGC
* * *
78211321 CCATAAGCAAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * *
78211367 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCG---GAC--GTTCGCAT
* *
78211417 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * *
78211460 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCG---GAC--GTTCGCAT
* *
78211510 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * *
78211553 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCG---GAC--GTTCGCAT
* *
78211603 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
78211646 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
78211683 TGCTCAACCA
Statistics
Matches: 257, Mismatches: 32, Indels: 54
0.75 0.09 0.16
Matches are distributed among these distances:
42 6 0.02
43 9 0.04
44 9 0.04
45 6 0.02
46 115 0.45
47 81 0.32
48 6 0.02
49 9 0.04
50 9 0.04
51 7 0.03
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:78211442 original size:93 final size:93
Alignment explanation
Indices: 78211330--78211685 Score: 676
Period size: 93 Copynumber: 3.8 Consensus size: 93
78211320 CCCATAAGCA
* * *
78211330 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
78211395 GAGTTCGAATGCCTAGTTACATCTCACG
66 GAGTTCGAATGCCTAGTTACATCTCACG
78211423 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
78211488 GAGTTCGAATGCCTAGTTACATCTCACG
66 GAGTTCGAATGCCTAGTTACATCTCACG
78211516 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
78211581 GAGTTCGAATGCCTAGTTACATCTCACG
66 GAGTTCGAATGCCTAGTTACATCTCACG
78211609 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
78211674 GAGTTCGGATGC
66 GAGTTCGAATGC
78211686 TCAACCATCC
Statistics
Matches: 259, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
93 259 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGAATGCCTAGTTACATCTCACG
Found at i:78211443 original size:47 final size:47
Alignment explanation
Indices: 78211375--78211634 Score: 306
Period size: 47 Copynumber: 5.6 Consensus size: 47
78211365 ATCCATAAGT
78211375 GAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTTACATCTCAC
* * * *
78211422 GAACTCGGACTCAACTCAACGAGTTCG---GAC-A-TTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTT-ACAT-C-TCA-C
78211468 GAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTTACATCTCAC
* * * *
78211515 GAACTCGGACTCAACTCAACGAGTTCG---GAC-A-TTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTT-ACAT-C-TCA-C
78211561 GAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTTACATCTCAC
78211608 GAACTCGGACTCAACTCAACGAGTTCG
1 GAACTCGGACTCAACTCAACGAGTTCG
78211635 GACATTCGCA
Statistics
Matches: 179, Mismatches: 16, Indels: 36
0.77 0.07 0.16
Matches are distributed among these distances:
42 4 0.02
43 8 0.04
44 6 0.03
45 4 0.02
46 54 0.30
47 81 0.45
48 4 0.02
49 6 0.03
50 8 0.04
51 4 0.02
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTTACATCTCAC
Found at i:78211701 original size:46 final size:45
Alignment explanation
Indices: 78211372--78211694 Score: 229
Period size: 47 Copynumber: 7.0 Consensus size: 45
78211362 CGCATCCATA
*
78211372 AGTGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTTA-CATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCTC
* * * *
78211420 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA--TA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTC
*
78211465 AGTGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTTA-CATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCTC
* * * *
78211513 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA--TA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTC
*
78211558 AGTGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTTA-CATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCTC
* * * *
78211606 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA--TA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTC
78211651 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATC
78211695 CTAGTGACAT
Statistics
Matches: 217, Mismatches: 29, Indels: 60
0.71 0.09 0.20
Matches are distributed among these distances:
43 2 0.01
44 16 0.07
45 6 0.03
46 86 0.40
47 87 0.40
48 5 0.02
49 12 0.06
50 3 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTC
Found at i:78218847 original size:12 final size:12
Alignment explanation
Indices: 78218830--78218857 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
78218820 GTCTCACTTG
78218830 CTTAAATCTTCC
1 CTTAAATCTTCC
78218842 CTTAAATCTTCC
1 CTTAAATCTTCC
78218854 CTTA
1 CTTA
78218858 GAAGTGGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.25, C:0.32, G:0.00, T:0.43
Consensus pattern (12 bp):
CTTAAATCTTCC
Found at i:78223615 original size:60 final size:60
Alignment explanation
Indices: 78223548--78223686 Score: 176
Period size: 60 Copynumber: 2.3 Consensus size: 60
78223538 CCAACTGTGT
78223548 TGATATGGG-TAAGGCCCAATATATCTCGACT-TGTAATAGGGCTACGGCCCAGATTAATAC
1 TGATATGGGCTAAGGCCCAATATA-CTCGACTATGTAA-AGGGCTACGGCCCAGATTAATAC
* * * * * *
78223608 TGATATGGGCT-AGGCCCAGTATACTCTATTACTGTAAGGGGTTATGGCCCAGATTAATAC
1 TGATATGGGCTAAGGCCCAATATACTCGACTA-TGTAAAGGGCTACGGCCCAGATTAATAC
78223668 TGATATGGGCTAAGGCCCA
1 TGATATGGGCTAAGGCCCA
78223687 GTTAACACTG
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
59 5 0.07
60 51 0.74
61 13 0.19
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (60 bp):
TGATATGGGCTAAGGCCCAATATACTCGACTATGTAAAGGGCTACGGCCCAGATTAATAC
Found at i:78223684 original size:28 final size:28
Alignment explanation
Indices: 78223586--78223698 Score: 97
Period size: 28 Copynumber: 3.9 Consensus size: 28
78223576 ACTTGTAATA
*
78223586 GGGCTACGGCCCAGATTAATACTGATAT
1 GGGCTAAGGCCCAGATTAATACTGATAT
* *
78223614 GGGCT-AGGCCCAGTATACTCTATTACTG-TAAG
1 GGGCTAAGGCCCAG---A-T-TAATACTGAT-AT
* *
78223646 GGGTTATGGCCCAGATTAATACTGATAT
1 GGGCTAAGGCCCAGATTAATACTGATAT
*
78223674 GGGCTAAGGCCCAG-TTAACACTGAT
1 GGGCTAAGGCCCAGATTAATACTGAT
78223699 TTCTGAATAG
Statistics
Matches: 67, Mismatches: 10, Indels: 17
0.71 0.11 0.18
Matches are distributed among these distances:
27 17 0.25
28 25 0.37
29 2 0.03
30 2 0.03
31 2 0.03
32 12 0.18
33 7 0.10
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (28 bp):
GGGCTAAGGCCCAGATTAATACTGATAT
Found at i:78229285 original size:18 final size:18
Alignment explanation
Indices: 78229245--78229286 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
78229235 AAAATATAGT
*
78229245 AACTAATTTTGATTGATAT
1 AACT-ATTTTGATTGATAA
*
78229264 AACTATTTTGATTGTTAA
1 AACTATTTTGATTGATAA
78229282 AACTA
1 AACTA
78229287 GCTAACAAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.38, C:0.07, G:0.10, T:0.45
Consensus pattern (18 bp):
AACTATTTTGATTGATAA
Found at i:78234129 original size:16 final size:18
Alignment explanation
Indices: 78234100--78234134 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
78234090 TGAATTCTAG
78234100 TAGCTATAAGAATT-AAA
1 TAGCTATAAGAATTCAAA
78234117 TAGCTAT-AGAATTCAAA
1 TAGCTATAAGAATTCAAA
78234134 T
1 T
78234135 CTAGAAGTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.31
Consensus pattern (18 bp):
TAGCTATAAGAATTCAAA
Found at i:78235328 original size:57 final size:57
Alignment explanation
Indices: 78235240--78235435 Score: 338
Period size: 57 Copynumber: 3.4 Consensus size: 57
78235230 CTATTAGGGC
* * * *
78235240 TTAGCCAGGACTGGTAACCCTAATTAAGCTCTTTTGAGCTTTCGTTATATAAAGGAT
1 TTAGCCTGGACTAGTAATCCTAATTGAGCTCTTTTGAGCTTTCGTTATATAAAGGAT
*
78235297 TTAGCCTGGACTAGTAATCCTAATTGAGCTCTTTTGAGATTTCGTTATATAAAGGAT
1 TTAGCCTGGACTAGTAATCCTAATTGAGCTCTTTTGAGCTTTCGTTATATAAAGGAT
78235354 TTAGCCTGGACTAGTAATCCTAATTGAGCTCTTTTGAGCTTTCGTTATATAAAGGAT
1 TTAGCCTGGACTAGTAATCCTAATTGAGCTCTTTTGAGCTTTCGTTATATAAAGGAT
*
78235411 TTAGCTTGGACTAGTAATCCTAATT
1 TTAGCCTGGACTAGTAATCCTAATT
78235436 AAGAGTGTGT
Statistics
Matches: 132, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 132 1.00
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.38
Consensus pattern (57 bp):
TTAGCCTGGACTAGTAATCCTAATTGAGCTCTTTTGAGCTTTCGTTATATAAAGGAT
Found at i:78238308 original size:32 final size:32
Alignment explanation
Indices: 78238272--78238336 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
78238262 GAAACCTGAG
* *
78238272 AACAATAAACGTCTACTAATCTGAAAACACAT
1 AACAACAAACGTCTACTAATCTAAAAACACAT
*
78238304 AACAACAAATGTCTACTAATCTAAAAACACAT
1 AACAACAAACGTCTACTAATCTAAAAACACAT
78238336 A
1 A
78238337 TAGAATTTGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.52, C:0.22, G:0.05, T:0.22
Consensus pattern (32 bp):
AACAACAAACGTCTACTAATCTAAAAACACAT
Found at i:78238560 original size:22 final size:22
Alignment explanation
Indices: 78238535--78238590 Score: 103
Period size: 22 Copynumber: 2.5 Consensus size: 22
78238525 AGCCAACTAC
78238535 CATGGGTGTCACGACACCAAAG
1 CATGGGTGTCACGACACCAAAG
78238557 CATGGGTGTCACGACACCAAAG
1 CATGGGTGTCACGACACCAAAG
*
78238579 CGTGGGTGTCAC
1 CATGGGTGTCAC
78238591 AACATTGAAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.27, C:0.27, G:0.30, T:0.16
Consensus pattern (22 bp):
CATGGGTGTCACGACACCAAAG
Found at i:78243593 original size:49 final size:47
Alignment explanation
Indices: 78243521--78243813 Score: 232
Period size: 49 Copynumber: 6.2 Consensus size: 47
78243511 TGTGTGTGTC
78243521 AGTGTAAGACCTGTCTGAGACATGGCATCGGCCTCAAGATATGCAAGCT
1 AGTGTAAGACCTGTCTGAGACATGGCATC-GCCTCAAGATATG-AAGCT
* ** * * *
78243570 AGTGTAAGACCTGTCT-AGGACATGGCATCGACTTGAGGTGTG--TC-
1 AGTGTAAGACCTGTCTGA-GACATGGCATCGCCTCAAGATATGAAGCT
78243614 AGTGTAAGACCTGTCTGAGACATGGCATCGGCCTCAAGATATGCAAGCT
1 AGTGTAAGACCTGTCTGAGACATGGCATC-GCCTCAAGATATG-AAGCT
* ** * * *
78243663 AGTGTAAGACCTGTCT-AGGACATGGCATCGACTTGAGGTGTG--TC-
1 AGTGTAAGACCTGTCTGA-GACATGGCATCGCCTCAAGATATGAAGCT
*
78243707 AGTGTAAGACCTGTCTGAGACATGGCATCAGCCTCGATGCATA-GAAG-T
1 AGTGTAAGACCTGTCTGAGACATGGCATC-GCCTC-AAG-ATATGAAGCT
* * * * *
78243755 CAGTGTAAGACCTGTCT-AGGACATAGCATAGCC-CTAGATGTGAGAGCC
1 -AGTGTAAGACCTGTCTGA-GACATGGCATCGCCTCAAGATATGA-AGCT
78243803 AGTGTAAGACC
1 AGTGTAAGACC
78243814 ATGTTTGGAA
Statistics
Matches: 193, Mismatches: 31, Indels: 42
0.73 0.12 0.16
Matches are distributed among these distances:
44 54 0.28
45 17 0.09
46 5 0.03
47 15 0.08
48 23 0.12
49 79 0.41
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCTGTCTGAGACATGGCATCGCCTCAAGATATGAAGCT
Found at i:78243636 original size:44 final size:45
Alignment explanation
Indices: 78243514--78243735 Score: 218
Period size: 44 Copynumber: 4.8 Consensus size: 45
78243504 TGGGTGATGT
*
78243514 GTGTGTCAGTGTAAGACCTGTCTGAGACATGGCATCGGCCTCAAG
1 GTGTGTCAGTGTAAGACCTGTCTGAGACATGGCATCGGACTCAAG
* * * **
78243559 ATATGCAAGCTAGTGTAAGACCTGTCT-AGGACATGGCATC-GACTTGAG
1 GTGTG---TC-AGTGTAAGACCTGTCTGA-GACATGGCATCGGACTCAAG
*
78243607 GTGTGTCAGTGTAAGACCTGTCTGAGACATGGCATCGGCCTCAAG
1 GTGTGTCAGTGTAAGACCTGTCTGAGACATGGCATCGGACTCAAG
* * * **
78243652 ATATGCAAGCTAGTGTAAGACCTGTCT-AGGACATGGCATC-GACTTGAG
1 GTGTG---TC-AGTGTAAGACCTGTCTGA-GACATGGCATCGGACTCAAG
78243700 GTGTGTCAGTGTAAGACCTGTCTGAGACATGGCATC
1 GTGTGTCAGTGTAAGACCTGTCTGAGACATGGCATC
78243736 AGCCTCGATG
Statistics
Matches: 143, Mismatches: 21, Indels: 27
0.75 0.11 0.14
Matches are distributed among these distances:
44 54 0.38
45 15 0.10
48 20 0.14
49 54 0.38
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (45 bp):
GTGTGTCAGTGTAAGACCTGTCTGAGACATGGCATCGGACTCAAG
Found at i:78243673 original size:93 final size:93
Alignment explanation
Indices: 78243514--78243783 Score: 465
Period size: 93 Copynumber: 2.9 Consensus size: 93
78243504 TGGGTGATGT
78243514 GTGTGTCAGTGTAAGACCTGTCTGAGACATGGCATCGGCCTCAAGATATGCAAGCTAGTGTAAGA
1 GTGTGTCAGTGTAAGACCTGTCTGAGACATGGCATCGGCCTCAAGATATGCAAGCTAGTGTAAGA
78243579 CCTGTCTAGGACATGGCATCGACTTGAG
66 CCTGTCTAGGACATGGCATCGACTTGAG
78243607 GTGTGTCAGTGTAAGACCTGTCTGAGACATGGCATCGGCCTCAAGATATGCAAGCTAGTGTAAGA
1 GTGTGTCAGTGTAAGACCTGTCTGAGACATGGCATCGGCCTCAAGATATGCAAGCTAGTGTAAGA
78243672 CCTGTCTAGGACATGGCATCGACTTGAG
66 CCTGTCTAGGACATGGCATCGACTTGAG
* *
78243700 GTGTGTCAGTGTAAGACCTGTCTGAGACATGGCATCAGCCTCGATGCATA-G-AAG-TCAGTGTA
1 GTGTGTCAGTGTAAGACCTGTCTGAGACATGGCATCGGCCTC-AAG-ATATGCAAGCT-AGTGTA
*
78243762 AGACCTGTCTAGGACATAGCAT
63 AGACCTGTCTAGGACATGGCAT
78243784 AGCCCTAGAT
Statistics
Matches: 171, Mismatches: 3, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
92 1 0.01
93 164 0.96
94 3 0.02
95 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (93 bp):
GTGTGTCAGTGTAAGACCTGTCTGAGACATGGCATCGGCCTCAAGATATGCAAGCTAGTGTAAGA
CCTGTCTAGGACATGGCATCGACTTGAG
Found at i:78245581 original size:6 final size:6
Alignment explanation
Indices: 78245570--78245596 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
78245560 AAGATGTGAC
78245570 TGAGAA TGAGAA TGAGAA TGAGAA TGA
1 TGAGAA TGAGAA TGAGAA TGAGAA TGA
78245597 TATGAGATGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.33, T:0.19
Consensus pattern (6 bp):
TGAGAA
Found at i:78246945 original size:19 final size:20
Alignment explanation
Indices: 78246917--78246958 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 20
78246907 TGTTTAATTG
78246917 TGATTGAATTGTT-TATGAAT
1 TGATTGAATT-TTGTATGAAT
*
78246937 TGATT-AATTTTGTCTGAAT
1 TGATTGAATTTTGTATGAAT
78246956 TGA
1 TGA
78246959 ATATTTAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 2 0.10
19 13 0.65
20 5 0.25
ACGTcount: A:0.29, C:0.02, G:0.19, T:0.50
Consensus pattern (20 bp):
TGATTGAATTTTGTATGAAT
Found at i:78252519 original size:30 final size:31
Alignment explanation
Indices: 78252470--78252542 Score: 114
Period size: 30 Copynumber: 2.4 Consensus size: 31
78252460 AGCTTACTAA
78252470 GTTTTATAGCT-TACTTTGTTTATTTTCCCGT
1 GTTTTATAG-TGTACTTTGTTTATTTTCCCGT
*
78252501 GTTTTATAGTGT-CTTTGTTTATTTTCTCGT
1 GTTTTATAGTGTACTTTGTTTATTTTCCCGT
78252531 GTTTTATAGTGT
1 GTTTTATAGTGT
78252543 TATGAAGCTA
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
30 30 0.75
31 10 0.25
ACGTcount: A:0.12, C:0.11, G:0.16, T:0.60
Consensus pattern (31 bp):
GTTTTATAGTGTACTTTGTTTATTTTCCCGT
Found at i:78255871 original size:15 final size:14
Alignment explanation
Indices: 78255850--78255884 Score: 61
Period size: 15 Copynumber: 2.4 Consensus size: 14
78255840 GGGATATAGT
78255850 AAAATATTATAAAA
1 AAAATATTATAAAA
78255864 ATAAATATTATAAAA
1 A-AAATATTATAAAA
78255879 AAAATA
1 AAAATA
78255885 CACATGTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 6 0.30
15 14 0.70
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
AAAATATTATAAAA
Found at i:78258872 original size:37 final size:37
Alignment explanation
Indices: 78258822--78258900 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
78258812 TTATTACGAA
* *
78258822 GTCTTACCCGGACAGAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
78258859 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
78258896 GTCTT
1 GTCTT
78258901 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:78259088 original size:47 final size:47
Alignment explanation
Indices: 78259019--78259317 Score: 580
Period size: 47 Copynumber: 6.4 Consensus size: 47
78259009 CCCTTCGGGA
*
78259019 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
78259066 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
78259113 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
78259160 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
78259207 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
78259254 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78259301 CTTATCACATATATACA
1 CTTATCACACATATACA
78259318 TTGTCTTGGC
Statistics
Matches: 250, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 250 1.00
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.30
Consensus pattern (47 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
Done.