Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 241 of 322
Found at i:80228893 original size:27 final size:27
Alignment explanation
Indices: 80228837--80229382 Score: 747
Period size: 27 Copynumber: 20.3 Consensus size: 27
80228827 GGGGAAAAAT
* * * *
80228837 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
80228863 GGTAATTCCACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80228890 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
80228917 GGTAATTTTACCCTACAAGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
80228944 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
80228971 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80228998 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
80229025 GGTAATTTTACCCTACAAGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
80229052 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
80229079 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80229106 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
80229133 GGTAATTTTACCCTACAAGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
80229160 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
80229187 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80229214 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
80229241 GGTAATTTTACCATACAGGGGTATTGT-
1 GGTAATTCTACCCTACAGGGGTATT-TC
* * *
80229268 GATAATTCTACTCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80229295 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* **
80229322 AGTAATTCTA-CAAATCAGGGGTATTTC
1 GGTAATTCTACCCTA-CAGGGGTATTTC
* *
80229349 GATAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
80229376 GATAATT
1 GGTAATT
80229383 TCACAAATCA
Statistics
Matches: 455, Mismatches: 60, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
26 17 0.04
27 435 0.96
28 3 0.01
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:80229397 original size:27 final size:26
Alignment explanation
Indices: 80228877--80229574 Score: 239
Period size: 27 Copynumber: 25.9 Consensus size: 26
80228867 ATTCCACCCT
* * * **
80228877 ACAGGGGTATTTCGGTAATTCTACCCT
1 ACAGGGGTATTTTGATAATTTTA-CAA
* * **
80228904 ACAGGGGTATTTCGGTAATTTTACCCT
1 ACAGGGGTATTTTGATAATTTTA-CAA
* ** * **
80228931 ACAAGGGTATTGCGATAATTCTACCCT
1 ACAGGGGTATTTTGATAATTTTA-CAA
* * **
80228958 ACAGGGGTATTTTGGTAATTCTACCCT
1 ACAGGGGTATTTTGATAATTTTA-CAA
* * * * **
80228985 ATAGGGGTATTTCGGTAATTCTACCCT
1 ACAGGGGTATTTTGATAATTTTA-CAA
* * **
80229012 ACAGGGGTATTTCGGTAATTTTACCCT
1 ACAGGGGTATTTTGATAATTTTA-CAA
* ** * **
80229039 ACAAGGGTATTGCGATAATTCTACCCT
1 ACAGGGGTATTTTGATAATTTTA-CAA
* * **
80229066 ACAGGGGTATTTTGGTAATTCTACCCT
1 ACAGGGGTATTTTGATAATTTTA-CAA
* * * * **
80229093 ATAGGGGTATTTCGGTAATTCTACCCT
1 ACAGGGGTATTTTGATAATTTTA-CAA
* * **
80229120 ACAGGGGTATTTCGGTAATTTTACCCT
1 ACAGGGGTATTTTGATAATTTTA-CAA
* ** * **
80229147 ACAAGGGTATTGCGATAATTCTACCCT
1 ACAGGGGTATTTTGATAATTTTA-CAA
* * **
80229174 ACAGGGGTATTTTGGTAATTCTACCCT
1 ACAGGGGTATTTTGATAATTTTA-CAA
* * * * **
80229201 ATAGGGGTATTTCGGTAATTCTACCCT
1 ACAGGGGTATTTTGATAATTTTA-CAA
* * *
80229228 ACAGGGGTATTTCGGTAATTTTACCAT
1 ACAGGGGTATTTTGATAATTTTA-CAA
* * **
80229255 ACAGGGGTATTGTGATAATTCTACTCT
1 ACAGGGGTATTTTGATAATTTTAC-AA
* * * * **
80229282 ACAAGGGTATTTCGGTAATTCTACCCT
1 ACAGGGGTATTTTGATAATTTTA-CAA
* *
80229309 ACAGGGGTA-TTTCAGTAATTCTACAA
1 ACAGGGGTATTTTGA-TAATTTTACAA
* * **
80229335 ATCAGGGGTATTTCGATAATTCTACCCT
1 A-CAGGGGTATTTTGATAATTTTA-CAA
* * *
80229363 ACAAGGGTATTTCGATAATTTCACAA
1 ACAGGGGTATTTTGATAATTTTACAA
*
80229389 ATCAGGGGTATTTCGATAATTTTACAA
1 A-CAGGGGTATTTTGATAATTTTACAA
* *
80229416 ACTAGGGGTATTTTGGTAATTTTAGAA
1 AC-AGGGGTATTTTGATAATTTTACAA
* * *
80229443 ACTAGGGGTATTTTGGTGATTTTATAA
1 AC-AGGGGTATTTTGATAATTTTACAA
*
80229470 ACCAAGGGTATTTT-AGTAATTTTACAA
1 A-CAGGGGTATTTTGA-TAATTTTACAA
* **
80229497 ACCAGGGGTATTTTGGTAATTTTGTAA
1 A-CAGGGGTATTTTGATAATTTTACAA
* *
80229524 ACCAAGGGTATTTTGGTAATTTTACAA
1 A-CAGGGGTATTTTGATAATTTTACAA
*
80229551 ACTAGGGGTATTTTGGTAATTTTA
1 AC-AGGGGTATTTTGATAATTTTA
80229575 TTGATCGAGG
Statistics
Matches: 578, Mismatches: 81, Indels: 24
0.85 0.12 0.04
Matches are distributed among these distances:
26 9 0.02
27 562 0.97
28 7 0.01
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (26 bp):
ACAGGGGTATTTTGATAATTTTACAA
Found at i:80229436 original size:108 final size:108
Alignment explanation
Indices: 80228863--80229382 Score: 889
Period size: 108 Copynumber: 4.8 Consensus size: 108
80228853 AAGGTATCTC
* *
80228863 GGTAATTCCACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTAC
1 GGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTAC
80228928 CCTACAAGGGTATTGCGATAATTCTACCCTACAGGGGTATTTT
66 CCTACAAGGGTATTGCGATAATTCTACCCTACAGGGGTATTTT
80228971 GGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTAC
1 GGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTAC
80229036 CCTACAAGGGTATTGCGATAATTCTACCCTACAGGGGTATTTT
66 CCTACAAGGGTATTGCGATAATTCTACCCTACAGGGGTATTTT
80229079 GGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTAC
1 GGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTAC
80229144 CCTACAAGGGTATTGCGATAATTCTACCCTACAGGGGTATTTT
66 CCTACAAGGGTATTGCGATAATTCTACCCTACAGGGGTATTTT
80229187 GGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTAC
1 GGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTAC
* * * * * *
80229252 CATACAGGGGTATTGTGATAATTCTACTCTACAAGGGTATTTC
66 CCTACAAGGGTATTGCGATAATTCTACCCTACAGGGGTATTTT
* * ** * *
80229295 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTA-CAAATCAGGGGTATTTCGATAATTCTA
1 GGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTA-CAGGGGTATTTCGGTAATTTTA
*
80229359 CCCTACAAGGGTATTTCGATAATT
65 CCCTACAAGGGTATTGCGATAATT
80229383 TCACAAATCA
Statistics
Matches: 393, Mismatches: 18, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
107 2 0.01
108 391 0.99
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (108 bp):
GGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTAC
CCTACAAGGGTATTGCGATAATTCTACCCTACAGGGGTATTTT
Found at i:80229518 original size:81 final size:81
Alignment explanation
Indices: 80229364--80229627 Score: 282
Period size: 81 Copynumber: 3.3 Consensus size: 81
80229354 TTCTACCCTA
* * * * * * *
80229364 CAAGGGTATTTCGATAATTTCACAAATCAGGGGTA-TTTCGATAATTTTACAAACTAGGGGTATT
1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAG-TAATTTTACAAACCAGGGGTATT
80229428 TTGGTAATTTTAG-AAAC
65 TTGGTAATTTT-GTAAAC
* * * *
80229445 TAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTT
80229510 TGGTAATTTTGTAAAC
66 TGGTAATTTTGTAAAC
* * * *** *
80229526 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATTGATC-GAGGGTATT
1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAG-GGGTATT
**
80229590 AGGGTAATTTTGTAAAC
65 TTGGTAATTTTGTAAAC
**
80229607 CAAGGGTATTTCAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
80229628 GTAAATTGAG
Statistics
Matches: 154, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
80 2 0.01
81 148 0.96
82 4 0.03
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.39
Consensus pattern (81 bp):
CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTT
TGGTAATTTTGTAAAC
Found at i:80229586 original size:54 final size:54
Alignment explanation
Indices: 80229364--80229632 Score: 295
Period size: 54 Copynumber: 5.0 Consensus size: 54
80229354 TTCTACCCTA
* * * * * * *
80229364 CAAGGGTATTTCGATAATTTCACAAATCAGGGGTATTTCGATAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAAC
* * * * *
80229418 TAGGGGTATTTTGGTAATTTTAGAAACTAGGGGTATTTTGGTGATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAAC
* *
80229472 CAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAAC
* ** *
80229526 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATTGAT
1 CAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAAC
* ** ** * ** *
80229580 CGAGGGTATTAGGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTGTAAA
1 CAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAA
80229633 TTGAGGGTAA
Statistics
Matches: 178, Mismatches: 37, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 178 1.00
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAAC
Found at i:80229612 original size:27 final size:27
Alignment explanation
Indices: 80229364--80229632 Score: 250
Period size: 27 Copynumber: 10.0 Consensus size: 27
80229354 TTCTACCCTA
* * * * *
80229364 CAAGGGTATTTCGATAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * *
80229391 CAGGGGTATTTCGATAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
80229418 TAGGGGTATTTTGGTAATTTTAGAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
80229445 TAGGGGTATTTTGGTGATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
80229472 CAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
80229499 CAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
80229526 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * ** *
80229553 TAGGGGTATTTTGGTAATTTTATTGAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* ** *
80229580 CGAGGGTATTAGGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
** *
80229607 CAAGGGTATTTCAGTAATTTTGTAAA
1 CAAGGGTATTTTGGTAATTTTATAAA
80229633 TTGAGGGTAA
Statistics
Matches: 202, Mismatches: 40, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 202 1.00
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:80229649 original size:81 final size:81
Alignment explanation
Indices: 80229502--80229652 Score: 196
Period size: 81 Copynumber: 1.9 Consensus size: 81
80229492 TACAAACCAG
** ** ***
80229502 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
1 GGGTATTAGGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTACAAACTAGGGGTAAAATGG
80229567 TAATTTTATTGATCGA
66 TAATTTTATTGATCGA
** *
80229583 GGGTATTAGGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTGTAAA-TTGAGGGTAAAATG
1 GGGTATTAGGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTACAAACTAG-GGGTAAAATG
80229647 GTAATT
65 GTAATT
80229653 CTGTAAATCG
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
80 2 0.03
81 57 0.97
ACGTcount: A:0.30, C:0.05, G:0.25, T:0.40
Consensus pattern (81 bp):
GGGTATTAGGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTACAAACTAGGGGTAAAATGG
TAATTTTATTGATCGA
Found at i:80229650 original size:27 final size:27
Alignment explanation
Indices: 80229620--80229681 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
80229610 GGGTATTTCA
* *
80229620 GTAATTTTGTAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
80229647 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
80229674 GTAATTCT
1 GTAATTCT
80229682 ATCTTATTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.35
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:80229677 original size:81 final size:81
Alignment explanation
Indices: 80229510--80229679 Score: 189
Period size: 81 Copynumber: 2.1 Consensus size: 81
80229500 AGGGGTATTT
** *** *
80229510 TGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTA
1 TGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTACAAACTAGGGGTAAAATGGTAATTCTA
** **
80229575 TTGATCGAGGGTATTA
66 TAAATCGAGGGTAAAA
* ** *
80229591 GGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTGTAAA-TTGAGGGTAAAATGGTAATTCT
1 TGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTACAAACTAG-GGGTAAAATGGTAATTCT
*
80229655 GTAAATCGAGGGTAAAA
65 ATAAATCGAGGGTAAAA
80229672 TGGTAATT
1 TGGTAATT
80229680 CTATCTTATT
Statistics
Matches: 72, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
80 2 0.03
81 70 0.97
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (81 bp):
TGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTACAAACTAGGGGTAAAATGGTAATTCTA
TAAATCGAGGGTAAAA
Found at i:80229716 original size:27 final size:26
Alignment explanation
Indices: 80229686--80229779 Score: 116
Period size: 27 Copynumber: 3.5 Consensus size: 26
80229676 AATTCTATCT
*
80229686 TATTTCAGTAATTTTACAAATCGAGGA
1 TATTT-AGTAATTTTACAAATCGAGGG
* *
80229713 TATTTAGGTAATTTTATAAATCGGGGG
1 TATTTA-GTAATTTTACAAATCGAGGG
* *
80229740 TACTTTGGTAATTTTACAAGTCGAGGG
1 TA-TTTAGTAATTTTACAAATCGAGGG
80229767 TATTTAGTAATTT
1 TATTTAGTAATTT
80229780 GGTAAACTAA
Statistics
Matches: 57, Mismatches: 8, Indels: 5
0.81 0.11 0.07
Matches are distributed among these distances:
26 11 0.19
27 43 0.75
28 3 0.05
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.41
Consensus pattern (26 bp):
TATTTAGTAATTTTACAAATCGAGGG
Found at i:80233063 original size:3 final size:3
Alignment explanation
Indices: 80233055--80233101 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
80233045 CAAGGATCCT
80233055 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
80233102 TCCCATAGAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:80235096 original size:50 final size:50
Alignment explanation
Indices: 80235021--80235119 Score: 171
Period size: 50 Copynumber: 2.0 Consensus size: 50
80235011 ATGTAGTTTT
*
80235021 GGTAAAATTCTTATCGAAAAATATATAATTATTATAAAATAATTAAATTC
1 GGTAAAATTCTTATCCAAAAATATATAATTATTATAAAATAATTAAATTC
* *
80235071 GGTAAAATTCTTGTCCAAAAATATATAATTCTTATAAAATAATTAAATT
1 GGTAAAATTCTTATCCAAAAATATATAATTATTATAAAATAATTAAATT
80235120 GTATACTTAT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.48, C:0.07, G:0.06, T:0.38
Consensus pattern (50 bp):
GGTAAAATTCTTATCCAAAAATATATAATTATTATAAAATAATTAAATTC
Found at i:80235159 original size:27 final size:26
Alignment explanation
Indices: 80235102--80235153 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 26
80235092 TATATAATTC
80235102 TTATAAAATAATTAAATTGTATACTTA
1 TTATAAAATAATTAAATTG-ATACTTA
80235129 TTATAAAATAATTAAATTG-TACTTA
1 TTATAAAATAATTAAATTGATACTTA
80235154 AATTATTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 6 0.24
27 19 0.76
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (26 bp):
TTATAAAATAATTAAATTGATACTTA
Found at i:80254018 original size:42 final size:44
Alignment explanation
Indices: 80253953--80254065 Score: 124
Period size: 43 Copynumber: 2.6 Consensus size: 44
80253943 CATCGACTTA
* *
80253953 TGATTTACGTGTAAGACCATGTCTGGGACATTGACATC-ATATT
1 TGATTTACGTGGAAGACCATGTCTGGGACAGTGACATCGATATT
* * *
80253996 TGATTTA-GTGGAAGACCCTGTCTGGGATAGTGTCATCGATATT
1 TGATTTACGTGGAAGACCATGTCTGGGACAGTGACATCGATATT
* * * *
80254039 TG-GTTACATGTAAGACCACGTCTGGGA
1 TGATTTACGTGGAAGACCATGTCTGGGA
80254066 TGTTGGCATT
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
42 28 0.48
43 30 0.52
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.33
Consensus pattern (44 bp):
TGATTTACGTGGAAGACCATGTCTGGGACAGTGACATCGATATT
Found at i:80254066 original size:43 final size:43
Alignment explanation
Indices: 80253957--80254066 Score: 118
Period size: 42 Copynumber: 2.6 Consensus size: 43
80253947 GACTTATGAT
* * * *
80253957 TTACGTGTAAGACCATGTCTGGGACATTGACATCATATTTGAT
1 TTACGTGTAAGACCACGTCTGGGATAGTGACATCATATTTGAG
* *
80254000 TTA-GTGGAAGACC-CTGTCTGGGATAGTGTCATCGATATTTG-G
1 TTACGTGTAAGACCAC-GTCTGGGATAGTGACATC-ATATTTGAG
*
80254042 TTACATGTAAGACCACGTCTGGGAT
1 TTACGTGTAAGACCACGTCTGGGAT
80254067 GTTGGCATTG
Statistics
Matches: 55, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
42 27 0.49
43 27 0.49
44 1 0.02
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (43 bp):
TTACGTGTAAGACCACGTCTGGGATAGTGACATCATATTTGAG
Found at i:80256568 original size:18 final size:20
Alignment explanation
Indices: 80256532--80256569 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
80256522 CCCACAACAT
80256532 TCTCTCATTCTTTCTTCTCC
1 TCTCTCATTCTTTCTTCTCC
80256552 TCTCTCATT-TTTC-TCTCC
1 TCTCTCATTCTTTCTTCTCC
80256570 ATTTTTTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.28
19 4 0.22
20 9 0.50
ACGTcount: A:0.05, C:0.39, G:0.00, T:0.55
Consensus pattern (20 bp):
TCTCTCATTCTTTCTTCTCC
Found at i:80259024 original size:28 final size:28
Alignment explanation
Indices: 80258961--80259057 Score: 169
Period size: 28 Copynumber: 3.5 Consensus size: 28
80258951 ATATTAAGTC
*
80258961 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
80258988 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
80259016 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
80259044 CGCACACTTAGTGC
1 CGCACACTTAGTGC
80259058 CGTACAATTT
Statistics
Matches: 67, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 22 0.33
28 45 0.67
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:80278414 original size:46 final size:46
Alignment explanation
Indices: 80278265--80278437 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
80278255 ATTTGTGTGT
* * * *
80278265 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGA-GACGA
* * * *
80278311 GAGCCCGTGTAAGACCATGTCTAGGACATGGCATCGG-TATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CGAGACGA
*
80278359 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGACG-A
*
80278406 -AGCCAGTGTAAGACATGTCTGGAACATGCATC
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATC
80278438 AGCTACAAGA
Statistics
Matches: 106, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
46 55 0.52
47 29 0.27
48 21 0.20
49 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGACGA
Found at i:80278462 original size:46 final size:46
Alignment explanation
Indices: 80278272--80278485 Score: 139
Period size: 46 Copynumber: 4.6 Consensus size: 46
80278262 TGTGAGCTAG
** * **
80278272 TGTAAGACATGTCTGGGACATGCATCAGCCACATTATG-AGAGCCCG
1 TGTAAGACATGTCTGGGACATGCATCAGCCACAAGACGTA-AGCCAA
* ** ** * *
80278318 TGTAAGACCATGTCTAGGACATGGCATC-GGTATTGAGACG-AGAGCTAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCAGCCA-CAAGACGTA-AGCCAA
* * *
80278366 TGTAAGACATGTCTGGGACATGCATCGGCCACGAGACGTAAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCAGCCACAAGACGTAAGCCAA
* * * **
80278412 TGTAAGACATGTCTGGAACATGCATCAGCTACAAGATG-ATAGTTAA
1 TGTAAGACATGTCTGGGACATGCATCAGCCACAAGACGTA-AGCCAA
*
80278458 TGTAAGACCCTGTCTGGGACATGACATC
1 TGTAAGA-CATGTCTGGGACATG-CATC
80278486 GACTTGAGAT
Statistics
Matches: 135, Mismatches: 25, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
45 1 0.01
46 66 0.49
47 44 0.33
48 24 0.18
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCAGCCACAAGACGTAAGCCAA
Found at i:80278526 original size:140 final size:140
Alignment explanation
Indices: 80278270--80278527 Score: 306
Period size: 140 Copynumber: 1.8 Consensus size: 140
80278260 TGTGTGAGCT
* ** **
80278270 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCCGTGTAAGACCATGTCTAG
1 AGTGTAAGACATGTCTGGAACATGCATCAGCCACAAGATGAGAGCCAATGTAAGACCATGTCTAG
* * * **
80278335 GACATGGCATCGGTATTGAGACGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACGA
66 GACATGACATCGGTATTGAGACGAAAGCCAGTGTAAGACATGTCTAAGACATGCATCGGCCACGA
80278400 GACGTAAGCC
131 GACGTAAGCC
* * ** * *
80278410 AGTGTAAGACATGTCTGGAACATGCATCAGCTACAAGATGATAGTTAATGTAAGACCCTGTCTGG
1 AGTGTAAGACATGTCTGGAACATGCATCAGCCACAAGATGAGAGCCAATGTAAGACCATGTCTAG
* *
80278475 GACATGACATC-G-ACTTGAGA-TATAAGCCAGTGTAAGACCATTTCTAAGACATG
66 GACATGACATCGGTA-TTGAGACGA-AAGCCAGTGTAAGA-CATGTCTAAGACATG
80278528 GCATTGGCAC
Statistics
Matches: 97, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
138 2 0.02
139 19 0.20
140 76 0.78
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGAACATGCATCAGCCACAAGATGAGAGCCAATGTAAGACCATGTCTAG
GACATGACATCGGTATTGAGACGAAAGCCAGTGTAAGACATGTCTAAGACATGCATCGGCCACGA
GACGTAAGCC
Found at i:80285967 original size:47 final size:46
Alignment explanation
Indices: 80285852--80286074 Score: 184
Period size: 47 Copynumber: 4.8 Consensus size: 46
80285842 ATTTGTGTGT
* * *
80285852 GAGCTAGTGTAAGA-CATGTTTGGGACATGCATCGGC-CGCATTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCACG-A-GATGA
* *
80285898 GAGCCAGTGTAAGACCACGTCTGGGACATGGCATCGGCACTGAGACGA
1 GAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCAC-GAGATGA
* ** *
80285946 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATCAACTACAAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGC-ACGAGATGA
* * * * **
80285992 TAGCCAGTGTAAGACCCTGTCTGGGACATGGCATAGACTTGAGAT-A
1 GAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCACGAGATGA
* * *
80286038 TGATCCAATGTAAGACCATTTCTGGGACATGGCATCG
1 -GAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCG
80286075 ACACCTTACC
Statistics
Matches: 144, Mismatches: 25, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
46 37 0.26
47 74 0.51
48 30 0.21
49 2 0.01
50 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (46 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCACGAGATGA
Found at i:80286014 original size:94 final size:94
Alignment explanation
Indices: 80285852--80286025 Score: 260
Period size: 94 Copynumber: 1.9 Consensus size: 94
80285842 ATTTGTGTGT
* ** * **
80285852 GAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCGCATTATGAGAGCCAGTGTAAGACCACG
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAACCACAAGATGAGAGCCAGTGTAAGACCACG
80285917 TCTGGGACATGGCATCGGCACTGAGACGA
66 TCTGGGACATGGCATCGGCACTGAGACGA
* *
80285946 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAACTACAAGATGATAGCCAGTGTAAGACC-CT
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAACCACAAGATGAGAGCCAGTGTAAGACCAC-
80286010 GTCTGGGACATGGCAT
65 GTCTGGGACATGGCAT
80286026 AGACTTGAGA
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
93 1 0.01
94 70 0.99
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.21
Consensus pattern (94 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCAACCACAAGATGAGAGCCAGTGTAAGACCACG
TCTGGGACATGGCATCGGCACTGAGACGA
Found at i:80286062 original size:94 final size:95
Alignment explanation
Indices: 80285859--80286073 Score: 226
Period size: 94 Copynumber: 2.3 Consensus size: 95
80285849 TGTGAGCTAG
* ** ** **
80285859 TGTAAGACATGTTTGGGACAT-GCATCGGCCGCATTATGAGAGCCAGTGTAAGACCACGTCTGGG
1 TGTAAGACATGTCTGGGACATGGCATCAACTACAAGATGAGAGCCAGTGTAAGACCACGTCTGGG
* * *
80285923 ACATGGCATCGGCACTGAGACGAGAGCTAG
66 ACATGGCATCAGCACTGAGACGAGAGCCAA
*
80285953 TGTAAGACATGTCTGGGACAT-GCATCAACTACAAGATGATAGCCAGTGTAAGACC-CTGTCTGG
1 TGTAAGACATGTCTGGGACATGGCATCAACTACAAGATGAGAGCCAGTGTAAGACCAC-GTCTGG
* *
80286016 GACATGGCAT-AG-ACTTGAGA-TATGATCCAA
65 GACATGGCATCAGCAC-TGAGACGA-GAGCCAA
*
80286046 TGTAAGACCATTTCTGGGACATGGCATC
1 TGTAAGA-CATGTCTGGGACATGGCATC
80286074 GACACCTTAC
Statistics
Matches: 102, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
92 3 0.03
93 18 0.18
94 76 0.75
95 5 0.05
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (95 bp):
TGTAAGACATGTCTGGGACATGGCATCAACTACAAGATGAGAGCCAGTGTAAGACCACGTCTGGG
ACATGGCATCAGCACTGAGACGAGAGCCAA
Found at i:80291969 original size:33 final size:33
Alignment explanation
Indices: 80291932--80292043 Score: 111
Period size: 33 Copynumber: 3.4 Consensus size: 33
80291922 TGTACATTCA
* ** *
80291932 TTTTCAAGTGGTACATACAAAGTATACCTTTCT
1 TTTTCAAGTGGTACACACAAAGTATACCTAACC
* *
80291965 TTTTCATA-CGGTATACACAAAGTATACCTAACC
1 TTTTCA-AGTGGTACACACAAAGTATACCTAACC
* * *
80291998 TTTCCAAGT-GTACACACAAAGTGTACATAACC
1 TTTTCAAGTGGTACACACAAAGTATACCTAACC
*
80292030 TTTTCAAGTTGTAC
1 TTTTCAAGTGGTAC
80292044 CACTTGGGTA
Statistics
Matches: 64, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
32 29 0.45
33 34 0.53
34 1 0.02
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (33 bp):
TTTTCAAGTGGTACACACAAAGTATACCTAACC
Found at i:80292029 original size:32 final size:33
Alignment explanation
Indices: 80291979--80292043 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
80291969 CATACGGTAT
*
80291979 ACACAAAGTATACCTAACCTTTCCAAG-TGTAC
1 ACACAAAGTATACATAACCTTTCCAAGTTGTAC
* *
80292011 ACACAAAGTGTACATAACCTTTTCAAGTTGTAC
1 ACACAAAGTATACATAACCTTTCCAAGTTGTAC
80292044 CACTTGGGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 24 0.83
33 5 0.17
ACGTcount: A:0.37, C:0.25, G:0.11, T:0.28
Consensus pattern (33 bp):
ACACAAAGTATACATAACCTTTCCAAGTTGTAC
Found at i:80299576 original size:32 final size:33
Alignment explanation
Indices: 80299483--80299583 Score: 123
Period size: 33 Copynumber: 3.1 Consensus size: 33
80299473 CATTCGTTTT
** *
80299483 CAAATGGTACACACAAAGTATACCTTTCCTTTT
1 CAAATGGTACACACAAAGTATACCTAACCTTTC
* * *
80299516 CATATGGTATACACAAAATATACCTAACCTTTC
1 CAAATGGTACACACAAAGTATACCTAACCTTTC
* *
80299549 CAAAT-GTACACACAAAGTGTACATAACCTTTC
1 CAAATGGTACACACAAAGTATACCTAACCTTTC
80299581 CAA
1 CAA
80299584 GTTGTACCAC
Statistics
Matches: 57, Mismatches: 11, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
32 26 0.46
33 31 0.54
ACGTcount: A:0.39, C:0.25, G:0.08, T:0.29
Consensus pattern (33 bp):
CAAATGGTACACACAAAGTATACCTAACCTTTC
Found at i:80303261 original size:6 final size:6
Alignment explanation
Indices: 80303250--80303278 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
80303240 ATTGATGTGA
80303250 CAATGT CAATGT CAATGT CAATGT CAATG
1 CAATGT CAATGT CAATGT CAATGT CAATG
80303279 ATATGATATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (6 bp):
CAATGT
Found at i:80305974 original size:13 final size:13
Alignment explanation
Indices: 80305956--80305980 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80305946 CACTATAATA
80305956 TTATTTTTGTGTG
1 TTATTTTTGTGTG
80305969 TTATTTTTGTGT
1 TTATTTTTGTGT
80305981 TTCAGAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.20, T:0.72
Consensus pattern (13 bp):
TTATTTTTGTGTG
Found at i:80308739 original size:21 final size:21
Alignment explanation
Indices: 80308715--80308754 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
80308705 AAATCTTGAA
*
80308715 TTTAACATGTCTTTGTTACGT
1 TTTAACATGTCATTGTTACGT
* *
80308736 TTTACCATTTCATTGTTAC
1 TTTAACATGTCATTGTTAC
80308755 TTCCAACAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.20, C:0.17, G:0.10, T:0.53
Consensus pattern (21 bp):
TTTAACATGTCATTGTTACGT
Found at i:80310976 original size:51 final size:51
Alignment explanation
Indices: 80310916--80311020 Score: 201
Period size: 51 Copynumber: 2.1 Consensus size: 51
80310906 ACTACTACTA
*
80310916 ATATGTATACATTTTTTTAATAAAAAGTCAAATTACAAAAAATAATGAAAC
1 ATATGTATACATTTTTTTAATAAAAAGTCAAATTACAAAAAATAATAAAAC
80310967 ATATGTATACATTTTTTTAATAAAAAGTCAAATTACAAAAAATAATAAAAC
1 ATATGTATACATTTTTTTAATAAAAAGTCAAATTACAAAAAATAATAAAAC
80311018 ATA
1 ATA
80311021 GCTAAGCAAT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.54, C:0.08, G:0.05, T:0.33
Consensus pattern (51 bp):
ATATGTATACATTTTTTTAATAAAAAGTCAAATTACAAAAAATAATAAAAC
Found at i:80315620 original size:39 final size:39
Alignment explanation
Indices: 80315545--80315622 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 39
80315535 ACCAAATTAT
* *
80315545 GCATTGGACTGGCATTACTTTCGGGTTTATATTCCTTTG
1 GCATTGGACTGGCATTACTTTCAGGTTTATACTCCTTTG
*
80315584 GCATTGGACTGGCATTGCTTTCAGGTTT-TACCTCCTTTG
1 GCATTGGACTGGCATTACTTTCAGGTTTATA-CTCCTTTG
80315623 CTTTGCTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
38 2 0.06
39 33 0.94
ACGTcount: A:0.14, C:0.21, G:0.23, T:0.42
Consensus pattern (39 bp):
GCATTGGACTGGCATTACTTTCAGGTTTATACTCCTTTG
Found at i:80318662 original size:46 final size:47
Alignment explanation
Indices: 80318612--80318784 Score: 187
Period size: 46 Copynumber: 3.7 Consensus size: 47
80318602 TGGTTGAGCA
* *
80318612 TCTGAACTCGTGGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-TG
1 TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAACTG
* * *
80318658 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAACT--G
*
80318703 CATCTGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGAATGCGAACT-
1 --TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAACTG
* * *
80318751 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
80318785 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 58 0.55
47 28 0.27
48 2 0.02
50 4 0.04
51 4 0.04
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (47 bp):
TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAACTG
Found at i:80318768 original size:93 final size:93
Alignment explanation
Indices: 80318609--80318779 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
80318599 GGATGGTTGA
* * * *
80318609 GCATCTGAACTCGTGGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCTGAACTCGTGGAGTTGAGTCCAAGTTCACTTATGAATGCGAATGCCCGAACTCGTTGAGT
80318674 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
80318702 GCATCTGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGAATGCGAACT-CCCGAGCTCGTTGAG
1 GCATCTGAACTCGTGGAGTTGAGTCCAAGTTCACTTATGAATGCGAA-TGCCCGAACTCGTTGAG
80318766 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
80318780 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
93 70 0.99
94 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCTGAACTCGTGGAGTTGAGTCCAAGTTCACTTATGAATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:80321223 original size:30 final size:30
Alignment explanation
Indices: 80321182--80321241 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
80321172 GGTCCTAAAT
* *
80321182 CTCAGACTACTTCTGCAGCCAGTGTAGGGA
1 CTCAGAATACTTCTGCAGCCAATGTAGGGA
80321212 CTCAGAATACTTCTGCAGCCAATGTAGGGA
1 CTCAGAATACTTCTGCAGCCAATGTAGGGA
80321242 ACTCGAGATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.23
Consensus pattern (30 bp):
CTCAGAATACTTCTGCAGCCAATGTAGGGA
Found at i:80325826 original size:46 final size:46
Alignment explanation
Indices: 80325764--80325936 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
80325754 TGGTTGAGCA
* *
80325764 TCCGGACTCGTGGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
80325810 TCCGAACTCGTTGAGTTGTGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
80325855 CATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
80325903 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
80325937 GGGGCGGGTT
Statistics
Matches: 101, Mismatches: 17, Indels: 18
0.74 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 57 0.56
47 27 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:80329890 original size:79 final size:79
Alignment explanation
Indices: 80329774--80330003 Score: 257
Period size: 79 Copynumber: 2.9 Consensus size: 79
80329764 TAGTGTTAAC
* * * ** * * *
80329774 AACA-AAAATCAAATAAATTCTATTAAATGGTAAGAATAGAATCCTAAAACATAATTGTTTAATT
1 AACAGAAAATCAAAAAAATTCTGTTGAACAGTAGGAATAAAATCCTAAAACAAAATTGTTTAATT
*
80329838 GATTTTTACTTGGA
66 GATTTCTACTTGGA
*
80329852 AACAGAAAATCAAACAAATTCTGTTGAACAGTAGGAATAAAATCCTAAAACAAAATTGTTTAATT
1 AACAGAAAATCAAAAAAATTCTGTTGAACAGTAGGAATAAAATCCTAAAACAAAATTGTTTAATT
* *
80329917 AATTTCTATTTGGA
66 GATTTCTACTTGGA
* * * * * * * *
80329931 AAAAGAAAAATGAAAAAAATT-TGTTGGACTGCAGGAATAAAATCCTAAAATAGAATTGTTCAAT
1 AACAG-AAAATCAAAAAAATTCTGTTGAACAGTAGGAATAAAATCCTAAAACAAAATTGTTTAAT
80329995 TGATTTCTA
65 TGATTTCTA
80330004 TTTACAAACA
Statistics
Matches: 129, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
78 4 0.03
79 112 0.87
80 13 0.10
ACGTcount: A:0.47, C:0.10, G:0.12, T:0.31
Consensus pattern (79 bp):
AACAGAAAATCAAAAAAATTCTGTTGAACAGTAGGAATAAAATCCTAAAACAAAATTGTTTAATT
GATTTCTACTTGGA
Found at i:80330004 original size:79 final size:79
Alignment explanation
Indices: 80329807--80330006 Score: 258
Period size: 79 Copynumber: 2.5 Consensus size: 79
80329797 TAAATGGTAA
* * * * * *
80329807 GAATAGAATCCTAAAACATAATTGTTTAATTGATTTTTACTTGGAAACAGAAAATCAAACAAATT
1 GAATAAAATCCTAAAACAAAATTGTTTAATTGATTTCTATTTGGAAAAAGAAAATCAAAAAAATT
*
80329872 CTGTTGAACAGTAG
66 CTGTTGAACAGCAG
* *
80329886 GAATAAAATCCTAAAACAAAATTGTTTAATTAATTTCTATTTGGAAAAAGAAAAATGAAAAAAAT
1 GAATAAAATCCTAAAACAAAATTGTTTAATTGATTTCTATTTGGAAAAAG-AAAATCAAAAAAAT
* *
80329951 T-TGTTGGACTGCAG
65 TCTGTTGAACAGCAG
* * *
80329965 GAATAAAATCCTAAAATAGAATTGTTCAATTGATTTCTATTT
1 GAATAAAATCCTAAAACAAAATTGTTTAATTGATTTCTATTT
80330007 ACAAACAGAA
Statistics
Matches: 105, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
79 92 0.88
80 13 0.12
ACGTcount: A:0.45, C:0.10, G:0.13, T:0.33
Consensus pattern (79 bp):
GAATAAAATCCTAAAACAAAATTGTTTAATTGATTTCTATTTGGAAAAAGAAAATCAAAAAAATT
CTGTTGAACAGCAG
Found at i:80332247 original size:43 final size:42
Alignment explanation
Indices: 80332194--80332314 Score: 154
Period size: 43 Copynumber: 2.8 Consensus size: 42
80332184 TATCGAGATG
*
80332194 TGATTACATGTAAGACCATGTCTGGGACATTGGCATC-ATTAAT
1 TGATTTCATGTAAGACCATGTCTGGGACA-TGGCATCGA-TAAT
* *
80332237 TGATTTCATGTAAGGCCCTGTCTGGGACAGTGGCATCGATAAT
1 TGATTTCATGTAAGACCATGTCTGGGACA-TGGCATCGATAAT
* * *
80332280 CGATTTCATGTAAGACCATATCTGGGATATGGCAT
1 TGATTTCATGTAAGACCATGTCTGGGACATGGCAT
80332315 TGTACGAGCT
Statistics
Matches: 68, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
42 6 0.09
43 61 0.90
44 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.31
Consensus pattern (42 bp):
TGATTTCATGTAAGACCATGTCTGGGACATGGCATCGATAAT
Found at i:80334143 original size:46 final size:47
Alignment explanation
Indices: 80334016--80334276 Score: 204
Period size: 46 Copynumber: 5.6 Consensus size: 47
80334006 GGCCGACACA
*
80334016 ATGTCCTAGACATGGTCTTACACTAGCTCTCACATAACTGT-GCCGATGCC
1 ATGTCCCAGACATGGTCTTACACTAGCTCT-ACAT--CTGTAGCCGATG-C
* *
80334066 ATGTCCTAGACATGGTCTTACACT-G-AC-ACATCTCGTAGCCGATGC
1 ATGTCCCAGACATGGTCTTACACTAGCTCTACATCT-GTAGCCGATGC
* * *
80334111 ATGTCCCAGACAT-GTCTTACACTAGCT-TACATCT-TGAGGTCAATGT
1 ATGTCCCAGACATGGTCTTACACTAGCTCTACATCTGT-A-GCCGATGC
* * *
80334157 ATGTCCCAAACAT-GTCTTACACTAGCTCT-CGTCTCAATA-CCGATGCC
1 ATGTCCCAGACATGGTCTTACACTAGCTCTACATCT--GTAGCCGATG-C
* * * * *
80334204 ATGTCCTAAACATGGTCTTACACTGGCTCT-CATACTTTGGCCGATGC
1 ATGTCCCAGACATGGTCTTACACTAGCTCTACAT-CTGTAGCCGATGC
*
80334251 ATGTCCCAGACAT-ATCTTACACTAGC
1 ATGTCCCAGACATGGTCTTACACTAGC
80334277 ACACAAATAA
Statistics
Matches: 176, Mismatches: 20, Indels: 34
0.77 0.09 0.15
Matches are distributed among these distances:
44 13 0.07
45 17 0.10
46 67 0.38
47 26 0.15
48 25 0.14
49 4 0.02
50 24 0.14
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (47 bp):
ATGTCCCAGACATGGTCTTACACTAGCTCTACATCTGTAGCCGATGC
Found at i:80334222 original size:94 final size:92
Alignment explanation
Indices: 80334104--80334276 Score: 215
Period size: 94 Copynumber: 1.9 Consensus size: 92
80334094 CATCTCGTAG
* * *
80334104 CCGATGCATGTCCCAGACATGTCTTACACTAGCT-TACAT-CTTGAGGTCAATGTATGTCCCAAA
1 CCGATGCATGTCCCAAACATGTCTTACACTAGCTCT-CATACTT-AGGCCAATGCATGTCCCAAA
*
80334167 CATGTCTTACACTAGCTCTCGTCTCAATA
64 CATATCTTACACTAGCTCTCGTCTCAATA
* * * * *
80334196 CCGATGCCATGTCCTAAACATGGTCTTACACTGGCTCTCATACTTTGGCCGATGCATGTCCCAGA
1 CCGATG-CATGTCCCAAACAT-GTCTTACACTAGCTCTCATACTTAGGCCAATGCATGTCCCAAA
80334261 CATATCTTACACTAGC
64 CATATCTTACACTAGC
80334277 ACACAAATAA
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
92 6 0.09
93 12 0.18
94 46 0.68
95 4 0.06
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (92 bp):
CCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATACTTAGGCCAATGCATGTCCCAAACA
TATCTTACACTAGCTCTCGTCTCAATA
Found at i:80336341 original size:93 final size:93
Alignment explanation
Indices: 80336233--80336405 Score: 319
Period size: 93 Copynumber: 1.9 Consensus size: 93
80336223 AAGTGAATGA
* *
80336233 CTAATAAATGATTTATGAGTCAAGCTTTGTGTGTGATTGATGGTAGTTAAAATACATATTGAAAT
1 CTAATAAATGATTTATGAGTCAAGCTTTGTATGTGATTCATGGTAGTTAAAATACATATTGAAAT
*
80336298 GGGTTGTATTGATAAGTATGATATGTGG
66 AGGTTGTATTGATAAGTATGATATGTGG
80336326 CTAATAAATGATTTATGAGTCAAGCTTTGTATGTGATTCATGGTAGTTAAAATACATATTGAAAT
1 CTAATAAATGATTTATGAGTCAAGCTTTGTATGTGATTCATGGTAGTTAAAATACATATTGAAAT
80336391 AGGTTGTATTGATAA
66 AGGTTGTATTGATAA
80336406 TGTAACAGTT
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.39
Consensus pattern (93 bp):
CTAATAAATGATTTATGAGTCAAGCTTTGTATGTGATTCATGGTAGTTAAAATACATATTGAAAT
AGGTTGTATTGATAAGTATGATATGTGG
Found at i:80338178 original size:12 final size:13
Alignment explanation
Indices: 80338161--80338192 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
80338151 GCAAATGTTA
80338161 AGTTTTG-TGCAT
1 AGTTTTGATGCAT
80338173 AGTTTTGATGCAT
1 AGTTTTGATGCAT
80338186 -GTTTTGA
1 AGTTTTGA
80338193 AATGTGCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.50
Consensus pattern (13 bp):
AGTTTTGATGCAT
Found at i:80340413 original size:34 final size:34
Alignment explanation
Indices: 80340370--80340436 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
80340360 AAGAATTGTC
**
80340370 TGTTAATGATTCGAGATAT-TTTTTTCCTGCTGNT
1 TGTTAATGATTCGAGATATCCGTTTTCCTGCTG-T
80340404 TGTTAATGATTCGAGATATCCGTTTTCCTGCTG
1 TGTTAATGATTCGAGATATCCGTTTTCCTGCTG
80340437 ATCTGATGCT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 19 0.63
35 11 0.37
ACGTcount: A:0.18, C:0.15, G:0.19, T:0.46
Consensus pattern (34 bp):
TGTTAATGATTCGAGATATCCGTTTTCCTGCTGT
Found at i:80344953 original size:67 final size:67
Alignment explanation
Indices: 80344841--80344969 Score: 249
Period size: 67 Copynumber: 1.9 Consensus size: 67
80344831 ACAAGGGATG
80344841 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCGAA
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCGAA
80344906 GC
66 GC
*
80344908 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCATGGGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGC
80344970 AATAAACTAA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
67 61 1.00
ACGTcount: A:0.43, C:0.10, G:0.26, T:0.22
Consensus pattern (67 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCGAA
GC
Found at i:80346473 original size:47 final size:48
Alignment explanation
Indices: 80346419--80346589 Score: 301
Period size: 49 Copynumber: 3.6 Consensus size: 48
80346409 TATTTGAATA
*
80346419 AATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
80346466 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATG
80346515 AATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
80346562 AATGTGAAAGTGTATATATATGTGATAA
1 AATGTGAAAGTG-ATATATATGTGATAA
80346590 TGTGACAGCC
Statistics
Matches: 119, Mismatches: 1, Indels: 6
0.94 0.01 0.05
Matches are distributed among these distances:
47 59 0.50
49 60 0.50
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:80348748 original size:40 final size:40
Alignment explanation
Indices: 80348693--80348882 Score: 328
Period size: 40 Copynumber: 4.8 Consensus size: 40
80348683 GAGCATTGGA
80348693 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
80348733 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
80348773 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
80348813 ATATATCCGGGCTAAGACCCGAAGGC-ATTCTTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATT-ATGCGAGTTG
* * *
80348853 CTATACCCGGGTTAAGACCCGAAGGCAATT
1 ATATATCCGGGCTAAGACCCGAAGGCAATT
80348883 GAGCTTGTGG
Statistics
Matches: 144, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
39 3 0.02
40 138 0.96
41 3 0.02
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:80355993 original size:40 final size:40
Alignment explanation
Indices: 80355939--80356323 Score: 601
Period size: 40 Copynumber: 9.6 Consensus size: 40
80355929 CATTTGAATG
80355939 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
80355979 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
80356019 ATATCTGGGCTAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
80356059 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
80356099 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* * *
80356139 ATATCCGGGATAAGACCCGAAGGCATTTGTGCAAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* * *
80356179 ATATCCGGGCTAAGAGCCGACGGCGTTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
80356219 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAA-TTGAT
* * *
80356259 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
80356299 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
80356324 ATTGAGCTTG
Statistics
Matches: 316, Mismatches: 27, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
39 2 0.01
40 313 0.99
41 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:80359797 original size:21 final size:22
Alignment explanation
Indices: 80359745--80359797 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
80359735 AAATAAAGTC
*
80359745 CATGTA-CAAATATCATGATCT
1 CATGTATCATATATCATGATCT
* *
80359766 CATGTTTTCATATATCAT-ATGT
1 CATG-TATCATATATCATGATCT
80359788 CATGTATCAT
1 CATGTATCAT
80359798 CATTTACTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 9 0.35
22 8 0.31
23 9 0.35
ACGTcount: A:0.32, C:0.17, G:0.09, T:0.42
Consensus pattern (22 bp):
CATGTATCATATATCATGATCT
Found at i:80363875 original size:43 final size:41
Alignment explanation
Indices: 80363742--80363892 Score: 176
Period size: 42 Copynumber: 3.6 Consensus size: 41
80363732 CCGAGACTAT
* *
80363742 GTGTAAGATCATATCTAGGATATGGCATCATTATGAGACTTC
1 GTGTAAGACCATATCTAGGATATGGCATCAATATGAGA-TTC
* * **
80363784 GTGTAAGACCATATCTAGGATACGACATTGATATGAGATTTC
1 GTGTAAGACCATATCTAGGATATGGCATCAATATGAGA-TTC
* *
80363826 GTGTAAGACCATAGCTAGGCTATTGGCATCAATATGAGATTCC
1 GTGTAAGACCATATCTAGGATA-TGGCATCAATATGAGATT-C
* *
80363869 ATGTAAGACCATATCTGGGATATG
1 GTGTAAGACCATATCTAGGATATG
80363893 ACATTGGTGT
Statistics
Matches: 90, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
42 59 0.66
43 31 0.34
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (41 bp):
GTGTAAGACCATATCTAGGATATGGCATCAATATGAGATTC
Found at i:80363884 original size:85 final size:84
Alignment explanation
Indices: 80363742--80363898 Score: 226
Period size: 85 Copynumber: 1.9 Consensus size: 84
80363732 CCGAGACTAT
* * * *
80363742 GTGTAAGATCATATCTAGGATATGGCATCATTATGAGACTTCGTGTAAGACCATATCTAGGATAC
1 GTGTAAGACCATAGCTAGGATATGGCATCAATATGAGACTTCATGTAAGACCATATCTAGGATAC
80363807 GACATTGATATGAGATTTC
66 GACATTGATATGAGATTTC
* *
80363826 GTGTAAGACCATAGCTAGGCTATTGGCATCAATATGAGA-TTCCATGTAAGACCATATCTGGGAT
1 GTGTAAGACCATAGCTAGGATA-TGGCATCAATATGAGACTT-CATGTAAGACCATATCTAGGAT
*
80363890 ATGACATTG
64 ACGACATTG
80363899 GTGTGGTACT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
84 21 0.33
85 43 0.67
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (84 bp):
GTGTAAGACCATAGCTAGGATATGGCATCAATATGAGACTTCATGTAAGACCATATCTAGGATAC
GACATTGATATGAGATTTC
Found at i:80375042 original size:19 final size:20
Alignment explanation
Indices: 80375018--80375055 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
80375008 GGTACCACCA
80375018 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
80375037 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
80375056 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:80375402 original size:47 final size:47
Alignment explanation
Indices: 80375331--80375453 Score: 210
Period size: 47 Copynumber: 2.6 Consensus size: 47
80375321 ATCCATAAAT
*
80375331 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* * *
80375378 GAATTTGGACTCAACTCAATGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
80375425 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
80375454 CATTTGCATC
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.25
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:80375490 original size:46 final size:45
Alignment explanation
Indices: 80375279--80375495 Score: 192
Period size: 47 Copynumber: 4.7 Consensus size: 45
80375269 TAACCCGCCC
* * *
80375279 CTAAGTGAACTCGGACTCAACTCAACGAGCTCGG-GC--GTTCGCAT
1 CTAA-TGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTT-ACAT
80375323 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 -C-T-AATGAACTCGGACTCAACTCAACGAGTTCGGA--CCTAGTTACAT
* * * *
80375373 CTCATGAATTTGGACTCAACTCAATGAGTTCGGATGCCTAGTTACAT
1 CTAATGAACTCGGACTCAACTCAACGAGTTCGGA--CCTAGTTACAT
* * * *
80375420 CTCACGAACTCGGACTCAACTCAACGAGTTCGGA-C-ATTTGCAT
1 CTAATGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTTACAT
80375463 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 -C-TAA-TGAACTCGGACTCAACTCAACGAGTT
80375496 TGGATGCTCA
Statistics
Matches: 147, Mismatches: 15, Indels: 19
0.81 0.08 0.10
Matches are distributed among these distances:
43 6 0.04
44 2 0.01
45 3 0.02
46 54 0.37
47 73 0.50
48 1 0.01
49 2 0.01
50 3 0.02
51 3 0.02
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (45 bp):
CTAATGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTTACAT
Found at i:80377482 original size:19 final size:19
Alignment explanation
Indices: 80377444--80377484 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
80377434 TGTTGCCGCT
**
80377444 GCACACTGTCGTTGCTGTC
1 GCACACTGTCGTTGAGGTC
*
80377463 GCACGCTGTCGTTGAGGTC
1 GCACACTGTCGTTGAGGTC
80377482 GCA
1 GCA
80377485 AGATTTTGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.12, C:0.29, G:0.32, T:0.27
Consensus pattern (19 bp):
GCACACTGTCGTTGAGGTC
Found at i:80393305 original size:20 final size:20
Alignment explanation
Indices: 80393277--80393333 Score: 87
Period size: 20 Copynumber: 2.9 Consensus size: 20
80393267 AAGACTATGA
*
80393277 ACCACTCCATTTACTTACTT
1 ACCATTCCATTTACTTACTT
80393297 ACCATTCCATTTACTTACTT
1 ACCATTCCATTTACTTACTT
* *
80393317 TCCTTTCCATTTACTTA
1 ACCATTCCATTTACTTA
80393334 GTATAAGCTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.23, C:0.32, G:0.00, T:0.46
Consensus pattern (20 bp):
ACCATTCCATTTACTTACTT
Found at i:80397257 original size:42 final size:42
Alignment explanation
Indices: 80397207--80397319 Score: 156
Period size: 43 Copynumber: 2.7 Consensus size: 42
80397197 CTGAGATTAT
* *
80397207 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGA-CTTC
1 GTGTAAGACCATATCTGGGATATGGCATCGATACGAGATC-AC
* *
80397249 GTGTAAGACCATAGCTGGGCTATTGGCATCGATACGAGATCAC
1 GTGTAAGACCATATCTGGGATA-TGGCATCGATACGAGATCAC
*
80397292 ATGTAAGACCATATCTGGGATATGGCAT
1 GTGTAAGACCATATCTGGGATATGGCAT
80397320 TGGTTCGATA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
42 26 0.42
43 35 0.56
44 1 0.02
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCGATACGAGATCAC
Found at i:80400707 original size:46 final size:45
Alignment explanation
Indices: 80400639--80400842 Score: 300
Period size: 46 Copynumber: 4.4 Consensus size: 45
80400629 TTATCTTCGA
* * * * * *
80400639 CATGATGCCATAGTGTCTTTCAACTATAGTCTTACTCATTTTCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCTGT
* *
80400685 CATGTTACCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTT-CTGT
80400731 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTC-TGT
80400777 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCTCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCT-GT
80400823 CATGTTGCCATGGTATCTTT
1 CATGTTGCCATGGTATCTTT
80400843 AAAATCACCC
Statistics
Matches: 145, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
45 5 0.03
46 140 0.97
ACGTcount: A:0.19, C:0.23, G:0.15, T:0.43
Consensus pattern (45 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCTGT
Found at i:80403143 original size:49 final size:50
Alignment explanation
Indices: 80403045--80403146 Score: 145
Period size: 50 Copynumber: 2.1 Consensus size: 50
80403035 AAACATAATA
*
80403045 GTTATAATTTCTTTTGGAAAGAATATAACGTTCTTTAATACTTTCCATAT
1 GTTATAATTTCTTTTGGAAAGAATATAACGTTATTTAATACTTTCCATAT
* * *
80403095 GTTATAA-TTCTTTTTGGAAAGAATATAATG-TATTTAATGCTTTTCATAT
1 GTTATAATTTC-TTTTGGAAAGAATATAACGTTATTTAATACTTTCCATAT
80403144 GTT
1 GTT
80403147 CTCTATAAGA
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
49 22 0.47
50 25 0.53
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.48
Consensus pattern (50 bp):
GTTATAATTTCTTTTGGAAAGAATATAACGTTATTTAATACTTTCCATAT
Found at i:80408121 original size:19 final size:19
Alignment explanation
Indices: 80408097--80408136 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
80408087 GAGTCCGAAG
80408097 AAGCCGAGAGCCATGCTCC
1 AAGCCGAGAGCCATGCTCC
80408116 AAGCCGAGAGCCATGCTCC
1 AAGCCGAGAGCCATGCTCC
80408135 AA
1 AA
80408137 CTTCCGTACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.30, C:0.35, G:0.25, T:0.10
Consensus pattern (19 bp):
AAGCCGAGAGCCATGCTCC
Found at i:80412145 original size:48 final size:47
Alignment explanation
Indices: 80412092--80412265 Score: 151
Period size: 50 Copynumber: 3.7 Consensus size: 47
80412082 TTATGAGAGC
* *
80412092 CAGTGTAAGACGATGTTTGGGACATGGCATCGA-GATTGAGATGAGTG
1 CAGTGTAAGACGATGTCTGGGACATGGCATCGACGA-CGAGATGAGTG
* **
80412139 CTAGTGTCAGACG-TGTCTGGGACAT-GCATCGACGACGAGATTTGT-
1 C-AGTGTAAGACGATGTCTGGGACATGGCATCGACGACGAGATGAGTG
* * * * *
80412184 CAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACAGATATACTAGAG
1 CAGTGTAAGACGATGTCTGGGACATGGCATCGACGAC-GAGAT--GAGTG
* *
80412233 CTTGTGTAAGACTATGTCTGGGACATGGCATCG
1 C-AGTGTAAGACGATGTCTGGGACATGGCATCG
80412266 GCACCTTACC
Statistics
Matches: 105, Mismatches: 13, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
44 9 0.09
45 15 0.14
46 25 0.24
47 14 0.13
48 12 0.11
49 1 0.01
50 29 0.28
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (47 bp):
CAGTGTAAGACGATGTCTGGGACATGGCATCGACGACGAGATGAGTG
Found at i:80412214 original size:46 final size:47
Alignment explanation
Indices: 80412092--80412215 Score: 139
Period size: 46 Copynumber: 2.7 Consensus size: 47
80412082 TTATGAGAGC
* * *
80412092 CAGTGTAAGACGATGTTTGGGACATGGCATCGAGATTGAGATGAGTG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGAGATCGAGATGAGTG
* * **
80412139 CTAGTGTCAGA-CGTGTCTGGGACAT-GCATCGACGA-CGAGATTTGT-
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCGA-GATCGAGATGAGTG
80412184 CAGTGTAAGACCATGTCTGGGACATGGCATCG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCG
80412216 GCACAGATAT
Statistics
Matches: 64, Mismatches: 9, Indels: 9
0.78 0.11 0.11
Matches are distributed among these distances:
44 8 0.12
45 14 0.22
46 20 0.31
47 14 0.22
48 8 0.12
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (47 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGAGATCGAGATGAGTG
Found at i:80419808 original size:42 final size:43
Alignment explanation
Indices: 80419710--80419864 Score: 126
Period size: 42 Copynumber: 3.7 Consensus size: 43
80419700 TGAGACATCG
* * *
80419710 TGTAAGACCGTGTCTGGGACA-CAGGCCTCG--ATTGAGATA-A
1 TGTAAGACCCTGTCTGGGACATC-GGCATCGATATTGAGTTACA
* * * *
80419750 AGTATAGGACCATGTCTGGGACATCGGCATCG-TATCTGA-TTTCG
1 TGTA-A-GACCCTGTCTGGGACATCGGCATCGATAT-TGAGTTACA
**
80419794 TGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGAGTTACA
1 TGTAAGACCCTGTCTGGGACATCGGCATCGATATTGAGTTACA
*
80419837 TGTAAGACCAC-GTCCGGGACATCGGCAT
1 TGTAAGACC-CTGTCTGGGACATCGGCAT
80419865 TGTACTTGTT
Statistics
Matches: 91, Mismatches: 15, Indels: 15
0.75 0.12 0.12
Matches are distributed among these distances:
40 3 0.03
41 1 0.01
42 46 0.51
43 34 0.37
44 7 0.08
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (43 bp):
TGTAAGACCCTGTCTGGGACATCGGCATCGATATTGAGTTACA
Found at i:80419864 original size:43 final size:42
Alignment explanation
Indices: 80419757--80419864 Score: 121
Period size: 43 Copynumber: 2.5 Consensus size: 42
80419747 TAAAGTATAG
* * *
80419757 GACCATGTCTGGGACATCGGCATCGTATCTGATTTCGTGTAA
1 GACCACGTCTGGGACATCGGCATCGTATCTGATTACATGTAA
**
80419799 GACC-CTGTCTGGGACAGAGGCATCGATAT-TGAGTTACATGTAA
1 GACCAC-GTCTGGGACATCGGCATCG-TATCTGA-TTACATGTAA
*
80419842 GACCACGTCCGGGACATCGGCAT
1 GACCACGTCTGGGACATCGGCAT
80419865 TGTACTTGTT
Statistics
Matches: 54, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
42 24 0.44
43 29 0.54
44 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (42 bp):
GACCACGTCTGGGACATCGGCATCGTATCTGATTACATGTAA
Found at i:80430004 original size:47 final size:47
Alignment explanation
Indices: 80429888--80430105 Score: 286
Period size: 47 Copynumber: 4.7 Consensus size: 47
80429878 GATGTTAATG
80429888 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * *
80429935 TGCAT-CATGTG-TTA---TGAATGGCCAATGTGATGAATGTGAACA
1 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
80429977 TGCATATATAG-GATAAGGCCAAATGGCCAATGTGATGAATGTGAGCA
1 TGCATATAT-GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * *
80430024 TGCATATGTGTGATAAGGCCGAATGGCCAATGTAATGAATATGAACA
1 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * *
80430071 TGCATATATGTGGTAAAGCCGAATGGCTAATGTGA
1 TGCATATATGTGATAAGGCCGAATGGCCAATGTGA
80430106 AATATATGTA
Statistics
Matches: 146, Mismatches: 18, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
42 32 0.22
43 3 0.02
44 3 0.02
45 2 0.01
46 6 0.04
47 100 0.68
ACGTcount: A:0.34, C:0.12, G:0.27, T:0.27
Consensus pattern (47 bp):
TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
Found at i:80430360 original size:37 final size:37
Alignment explanation
Indices: 80430310--80430422 Score: 199
Period size: 37 Copynumber: 3.1 Consensus size: 37
80430300 GGAAATATAT
*
80430310 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
80430347 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
80430384 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
80430421 TC
1 TC
80430423 TGAGCTAAAG
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 73 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:80432852 original size:40 final size:40
Alignment explanation
Indices: 80431696--80432840 Score: 2020
Period size: 40 Copynumber: 28.6 Consensus size: 40
80431686 GAGAGTGGTA
80431696 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* *
80431736 TATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATG
1 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* * * *
80431776 TATCCGGGCTAAGCCCCAAAGAGCATTCATGCTAGTGATG
1 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* *
80431816 TATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATG
1 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* *
80431856 TAACCGGGCTAAGTCCCAAAGAGCATTCGTGCTAGTGATG
1 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* *
80431896 TATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATG
1 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
80431936 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
80431976 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
80432016 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
80432056 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
80432096 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
80432136 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
80432176 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
80432216 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
80432256 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
80432296 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
80432336 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
80432376 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
80432416 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
80432456 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
80432496 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
80432536 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
80432576 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
*
80432616 TAACCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* * *
80432656 TATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATA
1 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* *
80432696 TATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATG
1 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* *
80432736 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATA
1 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* * ** * * *
80432776 TATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTA
1 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* **
80432816 TATCCGGGCTGGGTCCCGAAGAGCA
1 TACCCGGGCTAAGTCCCGAAGAGCA
80432841 ATCATGCTGG
Statistics
Matches: 1074, Mismatches: 31, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 1074 1.00
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.23
Consensus pattern (40 bp):
TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
Found at i:80433057 original size:25 final size:25
Alignment explanation
Indices: 80433016--80433065 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
80433006 TGTGCAAATA
80433016 CGAATGAATAAGAGCACTATGTGTG
1 CGAATGAATAAGAGCACTATGTGTG
* *
80433041 CGAATG-ATTAGAGGCACTGTGTGTG
1 CGAATGAATAAGA-GCACTATGTGTG
80433066 TGCGAATTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.30, C:0.12, G:0.32, T:0.26
Consensus pattern (25 bp):
CGAATGAATAAGAGCACTATGTGTG
Found at i:80437041 original size:23 final size:23
Alignment explanation
Indices: 80437015--80437089 Score: 66
Period size: 23 Copynumber: 3.2 Consensus size: 23
80437005 CAAATGGCCA
80437015 ATGTGATGAATGTGAGCATGCAT
1 ATGTGATGAATGTGAGCATGCAT
* * *
80437038 ATGTG-TGATAAG-GCCGAATGGCCA-
1 ATGTGATGA-ATGTG-AGCAT-G-CAT
80437062 ATGTGATGAATGTGAGCATGCAT
1 ATGTGATGAATGTGAGCATGCAT
80437085 ATGTG
1 ATGTG
80437090 TGATAAGGCC
Statistics
Matches: 39, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
22 6 0.15
23 16 0.41
24 11 0.28
25 6 0.15
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAGCATGCAT
Found at i:80437044 original size:25 final size:25
Alignment explanation
Indices: 80437016--80437093 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
80437006 AAATGGCCAA
80437016 TGTGATGAATGTGAGCATGCATATG
1 TGTGATGAATGTGAGCATGCATATG
* *
80437041 TGTGAT-AA-G-GCCGAATGGCCA-A--
1 TGTGATGAATGTG-AGCAT-G-CATATG
80437063 TGTGATGAATGTGAGCATGCATATG
1 TGTGATGAATGTGAGCATGCATATG
80437088 TGTGAT
1 TGTGAT
80437094 AAGGCCGAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 9 0.22
23 8 0.20
24 8 0.20
25 15 0.38
ACGTcount: A:0.28, C:0.10, G:0.32, T:0.29
Consensus pattern (25 bp):
TGTGATGAATGTGAGCATGCATATG
Found at i:80437068 original size:22 final size:22
Alignment explanation
Indices: 80437041--80437115 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 22
80437031 CATGCATATG
80437041 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* *
80437063 TGTGATGAATGTG-AGCAT-G-CATA
1 TGTGAT-AA-G-GCCGAATGGCCA-A
80437086 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
80437110 TGTGAT
1 TGTGAT
80437116 GAATATGAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 15 0.38
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.29, C:0.13, G:0.32, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:80437169 original size:47 final size:47
Alignment explanation
Indices: 80436930--80437161 Score: 347
Period size: 47 Copynumber: 4.9 Consensus size: 47
80436920 GATAATTGTG
** *
80436930 ATGTGAATGTGCATATATGTGATAAGGCCGAATGGCCAATGTGGTGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
80436977 ATGTGAACATGCATATATATGATAAGGCCAAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
80437024 ATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
80437071 ATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* * * *
80437118 ATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
80437162 AATATATGTC
Statistics
Matches: 170, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 170 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:80437419 original size:37 final size:37
Alignment explanation
Indices: 80437369--80437441 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 37
80437359 AATATATTCT
*
80437369 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
1 GGGTAAGACCCGATAACTACGTGTGGAGATTTTGTCC
*
80437406 GGGTAAGACCCGATAACTTCGTGTGGAGATTTTGTC
1 GGGTAAGACCCGATAACTACGTGTGGAGATTTTGTC
80437442 TGAGCTAAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.22, C:0.18, G:0.32, T:0.29
Consensus pattern (37 bp):
GGGTAAGACCCGATAACTACGTGTGGAGATTTTGTCC
Found at i:80440574 original size:35 final size:35
Alignment explanation
Indices: 80440535--80440604 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
80440525 TACGACACTA
*
80440535 TGGAAATTTTTGATGAGATATTGACAATTGTATGG
1 TGGAAATTCTTGATGAGATATTGACAATTGTATGG
80440570 TGGAAATTCTTGATGAGATATTGACAATTGTATGG
1 TGGAAATTCTTGATGAGATATTGACAATTGTATGG
80440605 ATCCCGGTTG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.31, C:0.04, G:0.26, T:0.39
Consensus pattern (35 bp):
TGGAAATTCTTGATGAGATATTGACAATTGTATGG
Found at i:80459233 original size:33 final size:33
Alignment explanation
Indices: 80459191--80459257 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 33
80459181 GCATGTAGTA
*
80459191 ACAGTCTGGGCCTGAGCCCTAGT-CAGTATCAGT
1 ACAGTCTGGGCCTGAGCCCTA-TACAGTAACAGT
*
80459224 ACAGTCTGGGCCTTAGCCCTATACAGTAACAGT
1 ACAGTCTGGGCCTGAGCCCTATACAGTAACAGT
80459257 A
1 A
80459258 TGGGCCTAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
32 1 0.03
33 30 0.97
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (33 bp):
ACAGTCTGGGCCTGAGCCCTATACAGTAACAGT
Found at i:80459261 original size:28 final size:28
Alignment explanation
Indices: 80459220--80459286 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 28
80459210 TAGTCAGTAT
* *
80459220 CAGT-ACAGTCTGGGCCTTAGCCCT-ATA
1 CAGTAACAGTATGGGCCTAAG-CCTAATA
80459247 CAGTAACAGTATGGGCCTAAGCCTAATA
1 CAGTAACAGTATGGGCCTAAGCCTAATA
* *
80459275 CAATATCAGTAT
1 CAGTAACAGTAT
80459287 AGTGTAATGC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
27 7 0.21
28 27 0.79
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.25
Consensus pattern (28 bp):
CAGTAACAGTATGGGCCTAAGCCTAATA
Found at i:80459511 original size:27 final size:26
Alignment explanation
Indices: 80459435--80459521 Score: 93
Period size: 27 Copynumber: 3.2 Consensus size: 26
80459425 AGTGTAGCTG
* *
80459435 CTAGAAACAGTAAATGTGGCAAAGCCA
1 CTAGTAACAGT-AATGTGGCATAGCCA
* *
80459462 CCAGTATCAGTAATTGTGGCATAGCCA
1 CTAGTAACAGTAA-TGTGGCATAGCCA
* *
80459489 CTAGTAACAGTGAATGTGACATAGTCA
1 CTAGTAACAGT-AATGTGGCATAGCCA
80459516 CTAGTA
1 CTAGTA
80459522 CTGTACTTCC
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
26 2 0.04
27 46 0.92
28 2 0.04
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (26 bp):
CTAGTAACAGTAATGTGGCATAGCCA
Found at i:80459692 original size:27 final size:27
Alignment explanation
Indices: 80459662--80459766 Score: 86
Period size: 27 Copynumber: 3.9 Consensus size: 27
80459652 GGGCATAATC
*
80459662 GTCATTTTACTAAACAGGGGTATTACG
1 GTCATTTTACCAAACAGGGGTATTACG
** * **
80459689 GTCATTTTACCCTATAGGGGTATTTTG
1 GTCATTTTACCAAACAGGGGTATTACG
** * *
80459716 GTCATTTTACCCTACATGGGCATTACG
1 GTCATTTTACCAAACAGGGGTATTACG
* *
80459743 GTAATTTTA-CAAACTGGGGGTATT
1 GTCATTTTACCAAAC-AGGGGTATT
80459767 TTGGTAATCT
Statistics
Matches: 60, Mismatches: 17, Indels: 2
0.76 0.22 0.03
Matches are distributed among these distances:
26 3 0.05
27 57 0.95
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCAAACAGGGGTATTACG
Found at i:80462318 original size:43 final size:42
Alignment explanation
Indices: 80462151--80462320 Score: 130
Period size: 43 Copynumber: 4.0 Consensus size: 42
80462141 ATAAGATTTT
* * * *
80462151 GATATGTGATTTCGTGTAAGACCACGTCTGAGA-GTTGGCATC
1 GATATTTGATTT-ATGTAAGACCACGTCTGGGATATTGGCATC
* * *
80462193 GAT-TTGAGATTTACGTGTAAGACCATGTCTGGGATATCGGCATC
1 GATATT-TGATTTA--TGTAAGACCACGTCTGGGATATTGGCATC
* * *** * *
80462237 G-TATTTGATTCCATGTACGACCTTATCTAGGAAATTGGCATC
1 GATATTTGATT-TATGTAAGACCACGTCTGGGATATTGGCATC
*
80462279 GATATTTGATTATATGTAAGACCACGTCTGGGATGTTGGCAT
1 GATATTTGATT-TATGTAAGACCACGTCTGGGATATTGGCAT
80462321 TGTATAAGCT
Statistics
Matches: 97, Mismatches: 24, Indels: 13
0.72 0.18 0.10
Matches are distributed among these distances:
41 1 0.01
42 32 0.33
43 53 0.55
44 11 0.11
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (42 bp):
GATATTTGATTTATGTAAGACCACGTCTGGGATATTGGCATC
Found at i:80472453 original size:40 final size:40
Alignment explanation
Indices: 80472416--80472640 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
80472406 GCTACTCGTT
* * *
80472416 CAAATGCCTTCGGGTCATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
80472456 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
80472496 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
80472536 CAAATGCCTTC-GGACTTAGCCCGGAATTAGTATCTCGGA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
80472575 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
80472616 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
80472641 CATCATTCGA
Statistics
Matches: 165, Mismatches: 16, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
39 38 0.23
40 115 0.70
41 12 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:80472600 original size:119 final size:120
Alignment explanation
Indices: 80472416--80472640 Score: 287
Period size: 119 Copynumber: 1.9 Consensus size: 120
80472406 GCTACTCGTT
* *
80472416 CAAATGCCTTCGGGTCATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
80472481 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * **
80472536 CAAATGCCTTC-GGACTTAGCCCGGA-ATTAGTATCTCGGACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
80472598 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
80472641 CATCATTCGA
Statistics
Matches: 90, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
118 4 0.04
119 67 0.74
120 19 0.21
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:80473855 original size:56 final size:56
Alignment explanation
Indices: 80473769--80473888 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
80473759 TATTAGTTTA
80473769 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
80473825 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
80473881 TTGCCCAT
1 TTGCCCAT
80473889 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:80479873 original size:40 final size:40
Alignment explanation
Indices: 80479603--80479867 Score: 349
Period size: 40 Copynumber: 6.7 Consensus size: 40
80479593 TTGAATGATG
* * * * *
80479603 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
80479643 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
80479683 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
80479722 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
80479762 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
80479802 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
80479843 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
80479868 AACGAGGAGC
Statistics
Matches: 204, Mismatches: 16, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
39 34 0.17
40 160 0.78
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:80479885 original size:120 final size:118
Alignment explanation
Indices: 80479603--80479900 Score: 334
Period size: 119 Copynumber: 2.5 Consensus size: 118
80479593 TTGAATGATG
** * * * *
80479603 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTGACTAAATCCGG-TTAA-ATCCCGAAGGCAT
* *
80479666 TTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
63 TTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTGGTACGAGTTACTAAA
* ** * *
80479722 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
* * *
80479787 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA
65 GTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTGGTACGAGTTACTA-AA
* * *
80479843 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
80479901 TACGTGATGT
Statistics
Matches: 153, Mismatches: 20, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
118 1 0.01
119 83 0.54
120 67 0.44
121 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTGGTACGAGTTACTAAA
Found at i:80482444 original size:23 final size:23
Alignment explanation
Indices: 80482417--80482464 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
80482407 AAGTACGATC
80482417 AATGTTATGGCAAA-AATAATGTT
1 AATGTTATGG-AAATAATAATGTT
80482440 AATGTTATGGAAATAATAATGTT
1 AATGTTATGGAAATAATAATGTT
80482463 AA
1 AA
80482465 CCCTGCAGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 3 0.12
23 21 0.88
ACGTcount: A:0.46, C:0.02, G:0.17, T:0.35
Consensus pattern (23 bp):
AATGTTATGGAAATAATAATGTT
Found at i:80502363 original size:15 final size:16
Alignment explanation
Indices: 80502343--80502377 Score: 63
Period size: 15 Copynumber: 2.2 Consensus size: 16
80502333 GCACAGTATG
80502343 ATAATTTTAT-ATTTT
1 ATAATTTTATAATTTT
80502358 ATAATTTTATAATTTT
1 ATAATTTTATAATTTT
80502374 ATAA
1 ATAA
80502378 CAGTTTACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
ATAATTTTATAATTTT
Found at i:80502366 original size:8 final size:8
Alignment explanation
Indices: 80502343--80502377 Score: 63
Period size: 8 Copynumber: 4.5 Consensus size: 8
80502333 GCACAGTATG
80502343 ATAATTTT
1 ATAATTTT
80502351 AT-ATTTT
1 ATAATTTT
80502358 ATAATTTT
1 ATAATTTT
80502366 ATAATTTT
1 ATAATTTT
80502374 ATAA
1 ATAA
80502378 CAGTTTACTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 7 0.27
8 19 0.73
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (8 bp):
ATAATTTT
Found at i:80508115 original size:21 final size:21
Alignment explanation
Indices: 80508074--80508116 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
80508064 TCGATTTGTA
*
80508074 AAAATTATAAAATTCATGTTT
1 AAAATTATAAAATTAATGTTT
*
80508095 AAAATTATGAAA-TAATGGTTT
1 AAAATTATAAAATTAAT-GTTT
80508116 A
1 A
80508117 TTTAGGTTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.49, C:0.02, G:0.09, T:0.40
Consensus pattern (21 bp):
AAAATTATAAAATTAATGTTT
Found at i:80508548 original size:38 final size:38
Alignment explanation
Indices: 80508497--80508651 Score: 222
Period size: 38 Copynumber: 4.1 Consensus size: 38
80508487 CGAATTATAT
** *
80508497 TGTTATTCAGGCTTCATGCCTAGCAGACTTAGTG-TCGG
1 TGTTATTCAGGCTTTGTGCCTAGCAGGCTTAGTGCT-GG
*
80508535 TGTTATTCGGGCTTTGTGCCTAGCAGGCTTAGTGCTGG
1 TGTTATTCAGGCTTTGTGCCTAGCAGGCTTAGTGCTGG
* * *
80508573 TGTTATTCGGGCTTTGTGCCTAGAAGGCTTAGTGCTGA
1 TGTTATTCAGGCTTTGTGCCTAGCAGGCTTAGTGCTGG
*
80508611 TGTTATTCAGGCTTTGTGCCTAGCAGGCTTAGTGCCGG
1 TGTTATTCAGGCTTTGTGCCTAGCAGGCTTAGTGCTGG
80508649 TGT
1 TGT
80508652 ATTAAAAGTT
Statistics
Matches: 106, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
38 105 0.99
39 1 0.01
ACGTcount: A:0.14, C:0.19, G:0.31, T:0.36
Consensus pattern (38 bp):
TGTTATTCAGGCTTTGTGCCTAGCAGGCTTAGTGCTGG
Found at i:80512147 original size:40 final size:40
Alignment explanation
Indices: 80512064--80512326 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
80512054 TTGAATGCTG
* * * * * *
80512064 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
80512104 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
80512144 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
80512184 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
80512224 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
80512264 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
80512303 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
80512327 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:80512346 original size:79 final size:80
Alignment explanation
Indices: 80512103--80512361 Score: 247
Period size: 80 Copynumber: 3.3 Consensus size: 80
80512093 AAGTGAATAT
* * * * * *
80512103 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
80512167 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
** * *
80512183 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
80512248 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
80512263 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
80512327 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
80512342 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
80512362 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:80520099 original size:40 final size:39
Alignment explanation
Indices: 80520068--80520277 Score: 233
Period size: 40 Copynumber: 5.3 Consensus size: 39
80520058 GGACTAAGAT
* *
80520068 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
80520108 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
80520148 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* ** *
80520188 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGAT-ACAAATCCGGGTTAAGTC
* * * * *
80520228 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
80520267 CCGAAGGCATT
1 CCGAAGGCATT
80520278 TGAACGAGGA
Statistics
Matches: 153, Mismatches: 13, Indels: 9
0.87 0.07 0.05
Matches are distributed among these distances:
39 33 0.22
40 117 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:80520231 original size:120 final size:120
Alignment explanation
Indices: 80520015--80520277 Score: 300
Period size: 120 Copynumber: 2.2 Consensus size: 120
80520005 TTGAATGCTG
* *
80520015 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
80520079 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
80520135 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* ** * * * *
80520198 TCGTGCGAGTTGTTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
80520254 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
80520278 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
119 38 0.32
120 73 0.61
121 9 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:80520297 original size:79 final size:80
Alignment explanation
Indices: 80520068--80520312 Score: 228
Period size: 80 Copynumber: 3.1 Consensus size: 80
80520058 GGACTAAGAT
* * * * * * * ** *
80520068 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGA-GATAC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-ACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGA-GC
80520131 TAAATCCGGGTTAAGTC
64 TAAATCCGGGTTAAGTC
* * * ** ** *
80520148 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
80520213 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * *
80520228 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
80520292 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
80520306 CCGAAGG
1 CCGAAGG
80520313 TACGTGATTT
Statistics
Matches: 138, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
78 14 0.10
79 46 0.33
80 75 0.54
81 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:80522054 original size:48 final size:48
Alignment explanation
Indices: 80521992--80522234 Score: 317
Period size: 48 Copynumber: 5.1 Consensus size: 48
80521982 CACACCCTAG
* *
80521992 GTGCCAATATCATGGCCTGAAGCCAAATCAATGTAACTCACACCCGAA
1 GTGCTAATATCATGGCCTGAAGCCAAATCAATGTAACTCGCACCCGAA
* *
80522040 GTGCTAATAGCATGG-CTCGAAGCCAAATCAATGTAACTCGCACCCAAA
1 GTGCTAATATCATGGCCT-GAAGCCAAATCAATGTAACTCGCACCCGAA
* * * * * *
80522088 GTGCTAATATCATGGCCTAAACCCAAATCGATGCAACTTGTACCCGAA
1 GTGCTAATATCATGGCCTGAAGCCAAATCAATGTAACTCGCACCCGAA
** * *
80522136 GTGCTAATATCAAAGCCCGAAGCCAAATCAAAGTAACTCGCACCCGAA
1 GTGCTAATATCATGGCCTGAAGCCAAATCAATGTAACTCGCACCCGAA
** *
80522184 GTGCTAATATCATGGCCCAAAGCCAAATCAATGTAACTCGCATCCGAA
1 GTGCTAATATCATGGCCTGAAGCCAAATCAATGTAACTCGCACCCGAA
80522232 GTG
1 GTG
80522235 AAGCCAAATC
Statistics
Matches: 166, Mismatches: 27, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
47 2 0.01
48 162 0.98
49 2 0.01
ACGTcount: A:0.35, C:0.28, G:0.18, T:0.19
Consensus pattern (48 bp):
GTGCTAATATCATGGCCTGAAGCCAAATCAATGTAACTCGCACCCGAA
Found at i:80525103 original size:96 final size:96
Alignment explanation
Indices: 80524945--80525210 Score: 339
Period size: 96 Copynumber: 2.8 Consensus size: 96
80524935 GGTGTCGATT
* * * *
80524945 CCATGTTCCAAACATGGTCTTACA----C-CATATGTCAAGGCCGATGCCATGTCCCAGACATGG
1 CCATGTTCCAAACATGGTCTTACATTGGCTCACATATCGAGACCGATGCCATGTCCCAGACATGG
*
80525005 TCTTACACTAGCTCTCACGTA-AACTG-TGATG
66 TCTTACACTAGCTCT--CGTATAAATGCTGATG
* ** * *
80525036 CCATGTTCCAAACATGGTCTTATATTGGCTCACATATCGAGGTCGATGCCATGTCCTATACATGG
1 CCATGTTCCAAACATGGTCTTACATTGGCTCACATATCGAGACCGATGCCATGTCCCAGACATGG
**
80525101 TCTTATGCTAGCTCTCGTATAAATGCTGATG
66 TCTTACACTAGCTCTCGTATAAATGCTGATG
*
80525132 CCATGTTCCAAACATGGTCTTACATTGGCTCACATATCGAGACCAATGCCATGTCCCAGACATGG
1 CCATGTTCCAAACATGGTCTTACATTGGCTCACATATCGAGACCGATGCCATGTCCCAGACATGG
*
80525197 TCTTACACTGGCTC
66 TCTTACACTAGCTC
80525211 ACATATCCTT
Statistics
Matches: 149, Mismatches: 19, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
91 23 0.15
94 4 0.03
95 5 0.03
96 117 0.79
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (96 bp):
CCATGTTCCAAACATGGTCTTACATTGGCTCACATATCGAGACCGATGCCATGTCCCAGACATGG
TCTTACACTAGCTCTCGTATAAATGCTGATG
Found at i:80525181 original size:48 final size:47
Alignment explanation
Indices: 80524893--80525217 Score: 193
Period size: 48 Copynumber: 6.9 Consensus size: 47
80524883 AAAATGCAGT
* * *
80524893 TGCCATG-TCTCAAACA-GGATCTTACACTGGTTCTCATATATCGGTGTCGA
1 TGCCATGTTC-CAAACATGG-TCTTACACTGG--CTCACATATC-GAGCCGA
* * * *
80524943 TTCCATGTTCCAAACATGGTCTTACA----C-CATATGTCAAGGCCGA
1 TGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGA-GCCGA
* * * * * * *
80524986 TGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACGTAAAC-TG-TGA
1 TGCCATGTTCCAAACATGGTCTTACACT-G-GCTCACAT-ATCGAGCCGA
* * *
80525034 TGCCATGTTCCAAACATGGTCTTATATTGGCTCACATATCGAGGTCGA
1 TGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGA-GCCGA
* ** * * * ** *
80525082 TGCCATG-TCCTATACATGGTCTTATGCTAGCTCTCGTATAAATGCTGA
1 TGCCATGTTCC-AAACATGGTCTTACACTGGCTCACATATCGA-GCCGA
* *
80525130 TGCCATGTTCCAAACATGGTCTTACATTGGCTCACATATCGAGACCAA
1 TGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAG-CCGA
* *
80525178 TGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATC
1 TGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATC
80525218 CTTAGTATCA
Statistics
Matches: 210, Mismatches: 48, Indels: 36
0.71 0.16 0.12
Matches are distributed among these distances:
43 34 0.16
44 1 0.00
45 2 0.01
46 6 0.03
47 6 0.03
48 129 0.61
49 5 0.02
50 22 0.10
51 5 0.02
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.30
Consensus pattern (47 bp):
TGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAGCCGA
Found at i:80534880 original size:17 final size:17
Alignment explanation
Indices: 80534860--80534893 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
80534850 AAGAAAAACA
80534860 AATGAATCTTAAAAATG
1 AATGAATCTTAAAAATG
80534877 AATGAATCTTAAAAATG
1 AATGAATCTTAAAAATG
80534894 TAATAAAGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.06, G:0.12, T:0.29
Consensus pattern (17 bp):
AATGAATCTTAAAAATG
Found at i:80545790 original size:59 final size:59
Alignment explanation
Indices: 80545698--80545814 Score: 216
Period size: 59 Copynumber: 2.0 Consensus size: 59
80545688 CTCAATAGTC
* *
80545698 GCTTTCCTCCTCTCTTTTACTAGCTCTTCTGCCTTGCATGCTCTCTCTACGAGCACTAT
1 GCTTTCCTCCTCTCTTTTACCAGCTCTTCTGCCTTGCATGCTCTCTCAACGAGCACTAT
80545757 GCTTTCCTCCTCTCTTTTACCAGCTCTTCTGCCTTGCATGCTCTCTCAACGAGCACTA
1 GCTTTCCTCCTCTCTTTTACCAGCTCTTCTGCCTTGCATGCTCTCTCAACGAGCACTA
80545815 CAAATTCTCT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 56 1.00
ACGTcount: A:0.13, C:0.37, G:0.12, T:0.38
Consensus pattern (59 bp):
GCTTTCCTCCTCTCTTTTACCAGCTCTTCTGCCTTGCATGCTCTCTCAACGAGCACTAT
Found at i:80549372 original size:16 final size:17
Alignment explanation
Indices: 80549351--80549384 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
80549341 GACACTTAAT
80549351 TTTTAT-TCTCTAGCTA
1 TTTTATATCTCTAGCTA
*
80549367 TTTTATATCTTTAGCTA
1 TTTTATATCTCTAGCTA
80549384 T
1 T
80549385 CAATTTAGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.21, C:0.15, G:0.06, T:0.59
Consensus pattern (17 bp):
TTTTATATCTCTAGCTA
Found at i:80550840 original size:40 final size:40
Alignment explanation
Indices: 80550794--80550872 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 40
80550784 ACACACCATG
* * *
80550794 TGGGGATAAAATCGACCCA-CCTAGCCCTGCACACCAAGTA
1 TGGGGATAAAATCAACCCATCC-AACCCTACACACCAAGTA
*
80550834 TGGGGATAGAATCAACCCATCCAACCCTACACACCAAGT
1 TGGGGATAAAATCAACCCATCCAACCCTACACACCAAGT
80550873 GGTACCATAC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 32 0.94
41 2 0.06
ACGTcount: A:0.34, C:0.33, G:0.18, T:0.15
Consensus pattern (40 bp):
TGGGGATAAAATCAACCCATCCAACCCTACACACCAAGTA
Found at i:80556300 original size:72 final size:73
Alignment explanation
Indices: 80556126--80556302 Score: 189
Period size: 72 Copynumber: 2.5 Consensus size: 73
80556116 CTCACGTTTG
* * * * * *
80556126 AGCTACTCACGGGTCTGTACACAAAGTCAGCA-CCTAGACCCCAAAGCATTATCATGTAATGCCC
1 AGCTACTCACGGGTTTATACACAAAGTCAGTACCCGAGAACCCAAAGCATTAACATGTAATGCCC
***
80556190 GCTCATTG
66 GCTCAGCA
* * *
80556198 AGCTACTCACGGGTTTATATATAAAGTCAGTACCCGA-AACCCAAAGCATTAACATG-ATATGCT
1 AGCTACTCACGGGTTTATACACAAAGTCAGTACCCGAGAACCCAAAGCATTAACATGTA-ATGCC
80556261 CGCTCAGCA
65 CGCTCAGCA
* * *
80556270 AGTTACTTACTGGTTTATACACAAAGTCAGTAC
1 AGCTACTCACGGGTTTATACACAAAGTCAGTAC
80556303 TCGGACCCAC
Statistics
Matches: 86, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
71 1 0.01
72 82 0.95
73 3 0.03
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (73 bp):
AGCTACTCACGGGTTTATACACAAAGTCAGTACCCGAGAACCCAAAGCATTAACATGTAATGCCC
GCTCAGCA
Found at i:80563137 original size:72 final size:72
Alignment explanation
Indices: 80563021--80563222 Score: 225
Period size: 72 Copynumber: 2.8 Consensus size: 72
80563011 CCACATATTT
* * *
80563021 TGTAATGCCCG--CATTTGAGCTACTCATGGGTCTGTACACAAAGTTA-TCAC-CTGGACCCCAA
1 TGTAATGCCCGCTCA-TTGAGCTACTCACGGGTTTATACACAAAGTTAGT-ACTC-GGACCCCAA
*
80563082 AGCATTATCA
63 AGCATTAACA
* * *
80563092 TGTAATGCCCGCTCATTGAGCTACTCACGGGTTTATATACCAAGTTAGTACTCGGACCCCATAGC
1 TGTAATGCCCGCTCATTGAGCTACTCACGGGTTTATACACAAAGTTAGTACTCGGACCCCAAAGC
80563157 ATTAACA
66 ATTAACA
* ** * *
80563164 TG-ATATGCTCGCTCAGCGAGTTACTCACGGGTTTATACACAAAGTTAGTACCCGGACCC
1 TGTA-ATGCCCGCTCATTGAGCTACTCACGGGTTTATACACAAAGTTAGTACTCGGACCC
80563223 ATATTACATA
Statistics
Matches: 112, Mismatches: 14, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
71 12 0.11
72 96 0.86
73 4 0.04
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (72 bp):
TGTAATGCCCGCTCATTGAGCTACTCACGGGTTTATACACAAAGTTAGTACTCGGACCCCAAAGC
ATTAACA
Found at i:80565339 original size:13 final size:13
Alignment explanation
Indices: 80565321--80565345 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80565311 CCTAGCACAC
80565321 GCCCGTGTCCCTG
1 GCCCGTGTCCCTG
80565334 GCCCGTGTCCCT
1 GCCCGTGTCCCT
80565346 CACACGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.48, G:0.28, T:0.24
Consensus pattern (13 bp):
GCCCGTGTCCCTG
Found at i:80572144 original size:96 final size:96
Alignment explanation
Indices: 80571943--80572261 Score: 424
Period size: 96 Copynumber: 3.3 Consensus size: 96
80571933 TAAAATGCCG
* **
80571943 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCAGCGTCGATGCCATGTTCCAAA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATA--AATGTCGATGCCATGTTCCAAA
* * *
80572008 CATGGTCTTACACTAGC-CTATATGTCGAGGCCG
64 CATGGTCTTACACTGGCTC-ATATATCGAGGCCA
* * * * *
80572041 ATACCATGTACCAGACATGGTCTTACACTATCTCTCACATAAATGTCGATGCCATGTTTCAAACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGTCGATGCCATGTTCCAAACA
*
80572106 TGGTCTTACACTGGCTCATATATCGAGGCTA
66 TGGTCTTACACTGGCTCATATATCGAGGCCA
*** **
80572137 ATGCCATGTCCCAGACATGGTCTTACACTAGAAATCATATAAATACCGATGCCATGTTCCAAACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGTCGATGCCATGTTCCAAACA
**
80572202 TGGTCTTACACTGGCTCACGTATCGAGGCCA
66 TGGTCTTACACTGGCTCATATATCGAGGCCA
*
80572233 ATGCCATGTCCCAAACATGGTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
80572262 GGCTTACATA
Statistics
Matches: 194, Mismatches: 26, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
96 157 0.81
97 1 0.01
98 36 0.19
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.28
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGTCGATGCCATGTTCCAAACA
TGGTCTTACACTGGCTCATATATCGAGGCCA
Found at i:80572203 original size:144 final size:145
Alignment explanation
Indices: 80571935--80572264 Score: 362
Period size: 144 Copynumber: 2.3 Consensus size: 145
80571925 CAAAAGAGTA
* *
80571935 AAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCAGCGTCGATGCCAT
1 AAATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGC-CTCATATATCAGCGTCAATGCCAT
* ** * ** * *
80572000 GTTCCAAACATGGTCTTACACTAGCCTATATGTCGAGGCCGATACCATGTACCAGACATGGTCTT
65 GTCCCAAACATGGTCTTACACTAGCAAATATATAAAGACCGATACCATGTACCAAACATGGTCTT
80572065 ACACTATCTCTCACAT
130 ACACTATCTCTCACAT
* **
80572081 AAATGTCGATGCCATGTTTCAAACATGGTCTTACACTGG-CTCATATATCGAG-G-CTAATGCCA
1 AAATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCCTCATATATC-AGCGTC-AATGCCA
* * * *
80572143 TGTCCCAGACATGGTCTTACACTAG-AAATCATATAAATACCGATGCCATGTTCCAAACATGGTC
64 TGTCCCAAACATGGTCTTACACTAGCAAAT-ATATAAAGACCGATACCATGTACCAAACATGGTC
** * **
80572207 TTACACTGGCTCACGTAT
128 TTACACTATCTCTCACAT
** * *
80572225 CGAGGCCAATGCCATGTCCCAAACATGGTCTTACACTGGC
1 AAATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGC
80572265 TTACATATCC
Statistics
Matches: 151, Mismatches: 29, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
143 3 0.02
144 111 0.74
145 2 0.01
146 35 0.23
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (145 bp):
AAATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCCTCATATATCAGCGTCAATGCCATG
TCCCAAACATGGTCTTACACTAGCAAATATATAAAGACCGATACCATGTACCAAACATGGTCTTA
CACTATCTCTCACAT
Found at i:80572262 original size:48 final size:48
Alignment explanation
Indices: 80571939--80572265 Score: 295
Period size: 48 Copynumber: 6.8 Consensus size: 48
80571929 AGAGTAAAAT
*
80571939 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATC-AG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGG--CTCATATATCGAG
* * * *
80571988 CGTCGATGCCATGTTCCAAACATGGTCTTACACTAGC-CTATATGTCGAG
1 -GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTC-ATATATCGAG
* * * ** * ** *
80572037 GCCGATACCATGTACCAGACATGGTCTTACACTATCTC-TCACATAAAT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCAT-ATATCGAG
* **
80572085 GTCGATGCCATGTTTCAAACATGGTCTTACACTGGCTCATATATCGAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATATATCGAG
** * ** * *
80572133 GCTAATGCCATGTCCCAGACATGGTCTTACACTAGAAATCATATA--AAT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACT-G-GCTCATATATCGAG
* * **
80572181 ACCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACGTATCGAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATATATCGAG
*
80572229 GCCAATGCCATGTCCCAAACATGGTCTTACACTGGCT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCT
80572266 TACATATCCC
Statistics
Matches: 218, Mismatches: 50, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
46 5 0.02
47 3 0.01
48 167 0.77
49 5 0.02
50 38 0.17
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATATATCGAG
Found at i:80580245 original size:27 final size:27
Alignment explanation
Indices: 80580149--80580246 Score: 97
Period size: 27 Copynumber: 3.6 Consensus size: 27
80580139 TTAGTTTACC
* * *
80580149 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTAAAATACCCTCGATTTATA
* * *
80580176 AAATTACCAAAGTACCCCCGATTTATA
1 AAATTACTAAAATACCCTCGATTTATA
* *** *
80580203 GAATTACTATTTTACCCTTGATTTATA
1 AAATTACTAAAATACCCTCGATTTATA
80580230 AAATTACTAAAATACCC
1 AAATTACTAAAATACCC
80580247 CTGTAGGGTA
Statistics
Matches: 54, Mismatches: 17, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.39, C:0.21, G:0.07, T:0.33
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGATTTATA
Found at i:80580261 original size:27 final size:27
Alignment explanation
Indices: 80580239--80580372 Score: 187
Period size: 27 Copynumber: 5.0 Consensus size: 27
80580229 AAAATTACTA
* *
80580239 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
80580266 AAATACCCTTGTAGGGTAGAATTACCA
1 AAATACCCTTGTAGGGTAGAATTACCG
* **
80580293 AAATACCCTTGTAGGGTAGAAATAAGG
1 AAATACCCTTGTAGGGTAGAATTACCG
80580320 AAATACCCTTGTAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * *
80580347 AGATACCCTTGTGGGGTAAAATTACC
1 AAATACCCTTGTAGGGTAGAATTACC
80580373 ATTTTGCCCT
Statistics
Matches: 94, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 94 1.00
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.25
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTACCG
Found at i:80580382 original size:27 final size:27
Alignment explanation
Indices: 80580352--80580415 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 27
80580342 TACCGAGATA
*
80580352 CCCTTGTGGGGTAAAATTACCATTTTG
1 CCCTTGTGGGGTAAAATGACCATTTTG
* * **
80580379 CCCTTAG-GGTGTTAAATGACTGTTTTG
1 CCCTT-GTGGGGTAAAATGACCATTTTG
80580406 CCCTTGTGGG
1 CCCTTGTGGG
80580416 CAAGTGACTG
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
26 1 0.03
27 27 0.93
28 1 0.03
ACGTcount: A:0.17, C:0.19, G:0.27, T:0.38
Consensus pattern (27 bp):
CCCTTGTGGGGTAAAATGACCATTTTG
Found at i:80580888 original size:96 final size:98
Alignment explanation
Indices: 80580679--80580896 Score: 287
Period size: 96 Copynumber: 2.2 Consensus size: 98
80580669 ATCCGAGATG
* * *
80580679 ATTATAGACCCGTTATCGATGGCTGAGTGCCGATCATGTTACTGAACGCTGTGTGCCTTTATTAT
1 ATTATAGACCCGTTATCGATGGCTGAGTGCCGATCATGTTACTCAAAGCTGTGTGCCATTATTAT
* * * * *
80580744 GGGCTTTGTATTAATATTGTGGGCTTTGTGCCG
66 AGGCTTCGTATCAATATTGTGGGCTTCGTGCCA
* * * * *
80580777 ATTATAGACCTGTTATAGATGGCTGAGTGTCGATCATGTTAC-CAAAGGT-TGTGCCATTATTGT
1 ATTATAGACCCGTTATCGATGGCTGAGTGCCGATCATGTTACTCAAAGCTGTGTGCCATTATTAT
* *
80580840 AGGCTTCGTATCGATATTGTGGGCTTCGTGCTA
66 AGGCTTCGTATCAATATTGTGGGCTTCGTGCCA
80580873 ATTATAGACCCGTTATCGATGGCT
1 ATTATAGACCCGTTATCGATGGCT
80580897 TTGTGCCACG
Statistics
Matches: 103, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
96 60 0.58
97 4 0.04
98 39 0.38
ACGTcount: A:0.21, C:0.17, G:0.26, T:0.37
Consensus pattern (98 bp):
ATTATAGACCCGTTATCGATGGCTGAGTGCCGATCATGTTACTCAAAGCTGTGTGCCATTATTAT
AGGCTTCGTATCAATATTGTGGGCTTCGTGCCA
Found at i:80581102 original size:6 final size:6
Alignment explanation
Indices: 80581093--80581186 Score: 77
Period size: 6 Copynumber: 15.3 Consensus size: 6
80581083 TTGCATTCAC
* *
80581093 ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
80581142 -TTACCTG ATTCTG ATTCTG GTTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
80581187 AATGTTTCTT
Statistics
Matches: 70, Mismatches: 10, Indels: 16
0.73 0.10 0.17
Matches are distributed among these distances:
5 4 0.06
6 56 0.80
7 7 0.10
8 3 0.04
ACGTcount: A:0.17, C:0.19, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:80581128 original size:31 final size:31
Alignment explanation
Indices: 80581093--80581165 Score: 119
Period size: 31 Copynumber: 2.4 Consensus size: 31
80581083 TTGCATTCAC
*
80581093 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTAATTCTGTCACCTGATTCTG
*
80581124 ATTCTGATTCTAATTCTGTTACCTGATTCTG
1 ATTCTGATTCTAATTCTGTCACCTGATTCTG
*
80581155 ATTCTGGTTCT
1 ATTCTGATTCT
80581166 CATTTTGATT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.16, C:0.21, G:0.15, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTAATTCTGTCACCTGATTCTG
Found at i:80583271 original size:27 final size:27
Alignment explanation
Indices: 80583241--80583379 Score: 174
Period size: 27 Copynumber: 5.2 Consensus size: 27
80583231 CGATTTACAA
*
80583241 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* *
80583268 AATTA-CTGAAATA-ACCTGTAAGGTAG
1 AATTATC-GAAATACCCCTGTAGGGTAG
* *
80583294 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
80583321 AAATATCGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* * *
80583348 AATTATCGAGATACCCTTGTAGGGTAA
1 AATTATCGAAATACCCCTGTAGGGTAG
80583375 AATTA
1 AATTA
80583380 CCATTTTGCC
Statistics
Matches: 96, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
26 22 0.23
27 74 0.77
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (27 bp):
AATTATCGAAATACCCCTGTAGGGTAG
Found at i:80583362 original size:54 final size:53
Alignment explanation
Indices: 80583241--80583377 Score: 179
Period size: 53 Copynumber: 2.6 Consensus size: 53
80583231 CGATTTACAA
* * *
80583241 AATTATTGAAATACCCCTGTAGGGTAGAATTACTGAAATAACCTGTAAGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAGAAATACTGAAATAACCTGTAAGGTAG
* * *
80583294 AATTACCGAAATACCCTTGTAGGGTAGAAATA-TCGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAGAAATACT-GAAATA-ACCTGTAAGGTAG
*
80583348 AATTATCGAGATACCCTTGTAGGGTA-AAAT
1 AATTATCGAAATACCCTTGTAGGGTAGAAAT
80583378 TACCATTTTG
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
52 1 0.01
53 38 0.51
54 35 0.47
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.27
Consensus pattern (53 bp):
AATTATCGAAATACCCTTGTAGGGTAGAAATACTGAAATAACCTGTAAGGTAG
Found at i:80583770 original size:20 final size:20
Alignment explanation
Indices: 80583747--80583787 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
80583737 TGTGTGCCGT
*
80583747 TATTGTGGGCTTCGTATTGA
1 TATTGTGGGCTTCGTACTGA
80583767 TATTGTGGGCTTCGTACTGA
1 TATTGTGGGCTTCGTACTGA
80583787 T
1 T
80583788 TATAGACCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.15, C:0.12, G:0.29, T:0.44
Consensus pattern (20 bp):
TATTGTGGGCTTCGTACTGA
Found at i:80584093 original size:6 final size:6
Alignment explanation
Indices: 80584084--80584177 Score: 59
Period size: 6 Copynumber: 15.3 Consensus size: 6
80584074 TTGCATTCAC
* *
80584084 ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
80584133 -TCACCTG ATTCTA ATTCTG GTTCTC ATTTTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
80584178 AATGTTTCTT
Statistics
Matches: 66, Mismatches: 14, Indels: 16
0.69 0.15 0.17
Matches are distributed among these distances:
5 3 0.05
6 54 0.82
7 7 0.11
8 2 0.03
ACGTcount: A:0.18, C:0.20, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:80584119 original size:31 final size:31
Alignment explanation
Indices: 80584084--80584156 Score: 119
Period size: 31 Copynumber: 2.4 Consensus size: 31
80584074 TTGCATTCAC
* *
80584084 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTAATTCTGTCACCTGATTCTA
80584115 ATTCTGATTCTAATTCTGTCACCTGATTCTA
1 ATTCTGATTCTAATTCTGTCACCTGATTCTA
*
80584146 ATTCTGGTTCT
1 ATTCTGATTCT
80584157 CATTTTGATT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.18, C:0.22, G:0.14, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTAATTCTGTCACCTGATTCTA
Found at i:80585303 original size:96 final size:96
Alignment explanation
Indices: 80585150--80585563 Score: 591
Period size: 96 Copynumber: 4.3 Consensus size: 96
80585140 CGCACCCTGG
* * * *
80585150 GTGCCAATATCATGGCCCGAAGCCAAATCAA--TAAAGCTCGTACCCA-AAGTGCCAATATCATG
1 GTGCTAATATCATGGCCCGAAGCCAAATCAACGT-AA-CTCGCA-CCAGAAGTACTAATATCATG
* * * *
80585212 GCCCGAAGCCAAATTAATATAACTCGCACTCGAG
63 GCCCGAAGCCAAATCAATGTAACTCACACTCGAA
* * * * *
80585246 GTGCTAATATCATGGCCCGAAGCCAAATTAATGTAACTTGCACCAGAAGTGCTAATATCGTGGCC
1 GTGCTAATATCATGGCCCGAAGCCAAATCAACGTAACTCGCACCAGAAGTACTAATATCATGGCC
* ** *
80585311 TGAAGCCAAATCAATGTAACTCATTCCCGAA
66 CGAAGCCAAATCAATGTAACTCACACTCGAA
*
80585342 GTGCTAATATCATGGCCCGAAGCCAAATCAACGTAACTCGCACCTGAAGTACTAATATCATGGCC
1 GTGCTAATATCATGGCCCGAAGCCAAATCAACGTAACTCGCACCAGAAGTACTAATATCATGGCC
*
80585407 CGAAGCCAAATCAATGTAACTTACACTCGAA
66 CGAAGCCAAATCAATGTAACTCACACTCGAA
*
80585438 GTGCTAATATCATGGCCCGAAGCCAAATCAACGTAACTCGCACCTGAAGTACTAATATCATGGCC
1 GTGCTAATATCATGGCCCGAAGCCAAATCAACGTAACTCGCACCAGAAGTACTAATATCATGGCC
*
80585503 CGAAGCCAAATCAATGTAACTTACACTCGAA
66 CGAAGCCAAATCAATGTAACTCACACTCGAA
80585534 GTGCTAATATCATGGCCCGAAGCCAAATCA
1 GTGCTAATATCATGGCCCGAAGCCAAATCA
80585564 GTAAAACTTC
Statistics
Matches: 290, Mismatches: 25, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
95 3 0.01
96 284 0.98
97 2 0.01
98 1 0.00
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.21
Consensus pattern (96 bp):
GTGCTAATATCATGGCCCGAAGCCAAATCAACGTAACTCGCACCAGAAGTACTAATATCATGGCC
CGAAGCCAAATCAATGTAACTCACACTCGAA
Found at i:80585401 original size:144 final size:144
Alignment explanation
Indices: 80585150--80585563 Score: 591
Period size: 144 Copynumber: 2.9 Consensus size: 144
80585140 CGCACCCTGG
* * * *
80585150 GTGCCAATATCATGGCCCGAAGCCAAATCAAT-AAAGCTCGTACCCAAAGTGCCAATATCATGGC
1 GTGCTAATATCATGGCCCGAAGCCAAATCAATGTAA-CTCGTACCCGAAGTGCTAATATCATGGC
* * * *
80585214 CCGAAGCCAAATTAATATAACTCGCACTCGAGGTGCTAATATCATGGCCCGAAGCCAAATTAATG
65 CCGAAGCCAAATCAATGTAACTCGCACTCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAATG
*
80585279 TAACTTGCAC-CAGAA
130 TAACTTACACTC-GAA
* * * *
80585294 GTGCTAATATCGTGGCCTGAAGCCAAATCAATGTAACTCATTCCCGAAGTGCTAATATCATGGCC
1 GTGCTAATATCATGGCCCGAAGCCAAATCAATGTAACTCGTACCCGAAGTGCTAATATCATGGCC
* *
80585359 CGAAGCCAAATCAACGTAACTCGCAC-CTGAAGTACTAATATCATGGCCCGAAGCCAAATCAATG
66 CGAAGCCAAATCAATGTAACTCGCACTC-GAAGTGCTAATATCATGGCCCGAAGCCAAATCAATG
80585423 TAACTTACACTCGAA
130 TAACTTACACTCGAA
* * * *
80585438 GTGCTAATATCATGGCCCGAAGCCAAATCAACGTAACTCGCACCTGAAGTACTAATATCATGGCC
1 GTGCTAATATCATGGCCCGAAGCCAAATCAATGTAACTCGTACCCGAAGTGCTAATATCATGGCC
**
80585503 CGAAGCCAAATCAATGTAACTTACACTCGAAGTGCTAATATCATGGCCCGAAGCCAAATCA
66 CGAAGCCAAATCAATGTAACTCGCACTCGAAGTGCTAATATCATGGCCCGAAGCCAAATCA
80585564 GTAAAACTTC
Statistics
Matches: 239, Mismatches: 27, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
143 1 0.00
144 234 0.98
145 4 0.02
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.21
Consensus pattern (144 bp):
GTGCTAATATCATGGCCCGAAGCCAAATCAATGTAACTCGTACCCGAAGTGCTAATATCATGGCC
CGAAGCCAAATCAATGTAACTCGCACTCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAATGT
AACTTACACTCGAA
Found at i:80585572 original size:48 final size:47
Alignment explanation
Indices: 80585150--80585563 Score: 510
Period size: 48 Copynumber: 8.6 Consensus size: 47
80585140 CGCACCCTGG
* * *
80585150 GTGCCAATATCATGGCCCGAAGCCAAATCAAT-AAAGCTCGTAC-CCAAA
1 GTGCTAATATCATGGCCCGAAGCCAAATCAATGTAA-CT--TACACCGAA
* * * ** *
80585198 GTGCCAATATCATGGCCCGAAGCCAAATTAATATAACTCGCACTCGAG
1 GTGCTAATATCATGGCCCGAAGCCAAATCAATGTAACTTACAC-CGAA
* *
80585246 GTGCTAATATCATGGCCCGAAGCCAAATTAATGTAACTTGCACCAGAA
1 GTGCTAATATCATGGCCCGAAGCCAAATCAATGTAACTTACACC-GAA
* * *
80585294 GTGCTAATATCGTGGCCTGAAGCCAAATCAATGTAACTCATTC-CCGAA
1 GTGCTAATATCATGGCCCGAAGCCAAATCAATGTAACT--TACACCGAA
* **
80585342 GTGCTAATATCATGGCCCGAAGCCAAATCAACGTAACTCGCACCTGAA
1 GTGCTAATATCATGGCCCGAAGCCAAATCAATGTAACTTACACC-GAA
*
80585390 GTACTAATATCATGGCCCGAAGCCAAATCAATGTAACTTACACTCGAA
1 GTGCTAATATCATGGCCCGAAGCCAAATCAATGTAACTTACAC-CGAA
* **
80585438 GTGCTAATATCATGGCCCGAAGCCAAATCAACGTAACTCGCACCTGAA
1 GTGCTAATATCATGGCCCGAAGCCAAATCAATGTAACTTACACC-GAA
*
80585486 GTACTAATATCATGGCCCGAAGCCAAATCAATGTAACTTACACTCGAA
1 GTGCTAATATCATGGCCCGAAGCCAAATCAATGTAACTTACAC-CGAA
80585534 GTGCTAATATCATGGCCCGAAGCCAAATCA
1 GTGCTAATATCATGGCCCGAAGCCAAATCA
80585564 GTAAAACTTC
Statistics
Matches: 323, Mismatches: 32, Indels: 22
0.86 0.08 0.06
Matches are distributed among these distances:
46 2 0.01
47 5 0.02
48 308 0.95
49 6 0.02
50 2 0.01
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.21
Consensus pattern (47 bp):
GTGCTAATATCATGGCCCGAAGCCAAATCAATGTAACTTACACCGAA
Done.