Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 243 of 322
Found at i:80906742 original size:28 final size:28
Alignment explanation
Indices: 80906702--80906800 Score: 112
Period size: 28 Copynumber: 3.6 Consensus size: 28
80906692 GGAAGTGTCT
*
80906702 TGGTGGCTATGCCACAAATTATCTGATC
1 TGGTGGCTCTGCCACAAATTATCTGATC
* *
80906730 TGGTGGCTCTGCCACATA-TATCTGTTC
1 TGGTGGCTCTGCCACAAATTATCTGATC
* *
80906757 TGGTAGCTCTGCCAC-GATTATCTGTATC
1 TGGTGGCTCTGCCACAAATTATCTG-ATC
* *
80906785 TGGTGACTCTGTCACA
1 TGGTGGCTCTGCCACA
80906801 TTATCTATTC
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
26 1 0.02
27 28 0.47
28 30 0.51
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.34
Consensus pattern (28 bp):
TGGTGGCTCTGCCACAAATTATCTGATC
Found at i:80906759 original size:27 final size:26
Alignment explanation
Indices: 80906702--80906813 Score: 125
Period size: 27 Copynumber: 4.1 Consensus size: 26
80906692 GGAAGTGTCT
* *
80906702 TGGTGGCTATGCCACAAATTATCTGATC
1 TGGTGGCTCTGCCAC--ATTATCTGTTC
80906730 TGGTGGCTCTGCCACATATATCTGTTC
1 TGGTGGCTCTGCCACAT-TATCTGTTC
*
80906757 TGGTAGCTCTGCCACGATTATCTGTATC
1 TGGTGGCTCTGCCAC-ATTATCTGT-TC
* * *
80906785 TGGTGACTCTGTCACATTATCTATTC
1 TGGTGGCTCTGCCACATTATCTGTTC
80906811 TGG
1 TGG
80906814 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
26 7 0.09
27 37 0.50
28 30 0.41
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (26 bp):
TGGTGGCTCTGCCACATTATCTGTTC
Found at i:80916686 original size:21 final size:21
Alignment explanation
Indices: 80916662--80916717 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
80916652 AACAGTGGTG
*
80916662 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGTA
*
80916683 GCGGTGAGATTGGATACTGTA
1 GCGGTGAGATTAGATACTGTA
80916704 GCGGTGAGATTAGA
1 GCGGTGAGATTAGA
80916718 AACAGCGGTG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.25, C:0.09, G:0.38, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:80918756 original size:32 final size:32
Alignment explanation
Indices: 80918717--80918876 Score: 241
Period size: 32 Copynumber: 5.0 Consensus size: 32
80918707 CATAAAAAAT
80918717 ATCATACATTAGGTTTACATATAAAAAAGTAG
1 ATCATACATTAGGTTTACATATAAAAAAGTAG
* *
80918749 ATCATACATTAGTTTTGCATATAAAAAAGTAG
1 ATCATACATTAGGTTTACATATAAAAAAGTAG
*
80918781 ATCATACATTAGGTTCACATATAAAAAAGTAG
1 ATCATACATTAGGTTTACATATAAAAAAGTAG
* *
80918813 ATCAAACATTA-GTTTAGCATATGAAAAAGTAG
1 ATCATACATTAGGTTTA-CATATAAAAAAGTAG
* *
80918845 ATCATACATTAGTTTTCCATATAAAAAAGTAG
1 ATCATACATTAGGTTTACATATAAAAAAGTAG
80918877 CATAGTTATA
Statistics
Matches: 114, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
31 4 0.04
32 107 0.94
33 3 0.03
ACGTcount: A:0.46, C:0.11, G:0.12, T:0.31
Consensus pattern (32 bp):
ATCATACATTAGGTTTACATATAAAAAAGTAG
Found at i:80918790 original size:64 final size:64
Alignment explanation
Indices: 80918717--80918876 Score: 266
Period size: 64 Copynumber: 2.5 Consensus size: 64
80918707 CATAAAAAAT
* *
80918717 ATCATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCATATAAAAAAGTAG
1 ATCATACATTAGGTTTACATATAAAAAAGTAGATCAAACATTAGTTTAGCATATAAAAAAGTAG
* *
80918781 ATCATACATTAGGTTCACATATAAAAAAGTAGATCAAACATTAGTTTAGCATATGAAAAAGTAG
1 ATCATACATTAGGTTTACATATAAAAAAGTAGATCAAACATTAGTTTAGCATATAAAAAAGTAG
* *
80918845 ATCATACATTAGTTTTCCATATAAAAAAGTAG
1 ATCATACATTAGGTTTACATATAAAAAAGTAG
80918877 CATAGTTATA
Statistics
Matches: 89, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 89 1.00
ACGTcount: A:0.46, C:0.11, G:0.12, T:0.31
Consensus pattern (64 bp):
ATCATACATTAGGTTTACATATAAAAAAGTAGATCAAACATTAGTTTAGCATATAAAAAAGTAG
Found at i:80931790 original size:46 final size:45
Alignment explanation
Indices: 80931732--80931904 Score: 184
Period size: 46 Copynumber: 3.7 Consensus size: 45
80931722 ACATCTCGTA
*
80931732 GCCGATGCATGTCCAAGACATGTCTTACACTAGCTTACGTATTGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTT-CGTATTGAG
* * ** *
80931778 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC-TTCGTATTGAG
* * * * *
80931824 ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TCGTATTGAG
* *
80931872 GCCGATGCATGTCCCTGACATGTCGTACACTAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAG
80931905 TTCACACAAG
Statistics
Matches: 103, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
46 54 0.52
47 28 0.27
48 21 0.20
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTCGTATTGAG
Found at i:80931875 original size:94 final size:92
Alignment explanation
Indices: 80931733--80931904 Score: 247
Period size: 94 Copynumber: 1.8 Consensus size: 92
80931723 CATCTCGTAG
* *
80931733 CCGATGCATGTCCAAGACATGTCTTACACTAGCTTACGTATTGAGGCCGATGCATGTCCCAGACA
1 CCGATGCATGTCCAAGACATGTCTTACACTAGCTTACATAATGAGGCCGATGCATGTCCCAGACA
*
80931798 TGTCTTACACTAGCACTCGTCTCAATA
66 TGTCGTACACTAGCACTCGTCTCAATA
* * * *
80931825 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATGTGGCCGATGCATGTCCCTG
1 CCGATG-CATGTCCAAGACAT-GTCTTACACTAGCT-TACATAATGAGGCCGATGCATGTCCCAG
80931889 ACATGTCGTACACTAG
63 ACATGTCGTACACTAG
80931905 TTCACACAAG
Statistics
Matches: 70, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
92 6 0.09
93 13 0.19
94 50 0.71
95 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (92 bp):
CCGATGCATGTCCAAGACATGTCTTACACTAGCTTACATAATGAGGCCGATGCATGTCCCAGACA
TGTCGTACACTAGCACTCGTCTCAATA
Found at i:80942342 original size:46 final size:46
Alignment explanation
Indices: 80942275--80942443 Score: 202
Period size: 46 Copynumber: 3.7 Consensus size: 46
80942265 AACCCGCCCC
*
80942275 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* *
80942321 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
80942369 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
80942414 TAAGTGAACTCGGACTCAACTCAACGAGTT
1 TAAGTGAACTCGGACTCAACTCAACGAGTT
80942444 TGGATGCTCA
Statistics
Matches: 103, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 57 0.55
47 28 0.27
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:80942387 original size:93 final size:93
Alignment explanation
Indices: 80942280--80942450 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
80942270 GCCCCTAAGT
* *
80942280 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
80942345 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
80942373 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
80942438 CGAGTTTGGATGC
66 CGAGTTCGGATGC
80942451 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:80945771 original size:16 final size:16
Alignment explanation
Indices: 80945745--80945788 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
80945735 CTAATACCAC
* *
80945745 TAAATGTAACACTCCA
1 TAAACGTAACACCCCA
**
80945761 TATTCGTAACACCCCA
1 TAAACGTAACACCCCA
80945777 TAAACGTAACAC
1 TAAACGTAACAC
80945789 GCCCGTGTGG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.41, C:0.30, G:0.07, T:0.23
Consensus pattern (16 bp):
TAAACGTAACACCCCA
Found at i:80946943 original size:46 final size:46
Alignment explanation
Indices: 80946844--80947061 Score: 173
Period size: 46 Copynumber: 4.7 Consensus size: 46
80946834 TATCTATGCT
* * * *
80946844 GATGTCATGTGCCAGACATGGTCTTACACT-G-ATACATCTCGTA-GCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTTACGTCTCG-AGGCC
80946890 GATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCGAGGCC
* * * **
80946936 GATGCATGTCCCAGACATGTCTTATACTAGCACT-CGTCTCAATACC
1 GATGCATGTCCCAGACATGTCTTACACTAGC-TTACGTCTCGAGGCC
* * * *
80946982 AATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCACAG--T-GTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCT-T-AC-GTCTCGAGGCC
80947030 GATGCATGTCCCTA-ACATGTCTTACACTAGCT
1 GATGCATGTCCC-AGACATGTCTTACACTAGCT
80947062 CACACAAGTG
Statistics
Matches: 141, Mismatches: 20, Indels: 22
0.77 0.11 0.12
Matches are distributed among these distances:
44 10 0.07
45 15 0.11
46 69 0.49
47 26 0.18
48 18 0.13
49 1 0.01
50 1 0.01
51 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCGAGGCC
Found at i:80950474 original size:96 final size:96
Alignment explanation
Indices: 80950273--80950463 Score: 249
Period size: 96 Copynumber: 2.0 Consensus size: 96
80950263 CTATACTTAG
* * * *
80950273 CATGGAAATACTCTAGTTTGGCGAAAACTTTCACTACCAAAATCTTCAAGCACATTGAATTCTCT
1 CATGGATATACTCTAGTTTGGCGAAAACTTTCACTACCAAAATCTTCAAGCACATCGAATTATCG
*
80950338 ATTATGGCAAAACCATAGCGAATTCATATAA
66 ATTATAGCAAAACCATAGCGAATTCATATAA
** * * * *
80950369 CATGGATATACTCTAGTTTGGCGAGGACTTTCACTACCCATAA-CTTCGAGCGCCTCGAATTATC
1 CATGGATATACTCTAGTTTGGCGAAAACTTTCACTA-CCAAAATCTTCAAGCACATCGAATTATC
* *
80950433 GATTCTAGCGAAACCATAGCGAATTCATATA
65 GATTATAGCAAAACCATAGCGAATTCATATA
80950464 TCAATTATAT
Statistics
Matches: 81, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
96 76 0.94
97 5 0.06
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.29
Consensus pattern (96 bp):
CATGGATATACTCTAGTTTGGCGAAAACTTTCACTACCAAAATCTTCAAGCACATCGAATTATCG
ATTATAGCAAAACCATAGCGAATTCATATAA
Found at i:80950637 original size:23 final size:23
Alignment explanation
Indices: 80950572--80950661 Score: 90
Period size: 23 Copynumber: 3.9 Consensus size: 23
80950562 ACAAAACTTA
* * * *
80950572 CCATAAAGACATTACAGAATACG
1 CCATAAAGGCATTCCGGAATATG
* *
80950595 CCATAAAGGCATTACAGAATATG
1 CCATAAAGGCATTCCGGAATATG
* *
80950618 CCATAAAAGTATTCCGGAATATG
1 CCATAAAGGCATTCCGGAATATG
* *
80950641 CCACAAAGGCATTCTGGAATA
1 CCATAAAGGCATTCCGGAATA
80950662 CAATAAAAAG
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 57 1.00
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.21
Consensus pattern (23 bp):
CCATAAAGGCATTCCGGAATATG
Found at i:80953683 original size:41 final size:42
Alignment explanation
Indices: 80953576--80953735 Score: 119
Period size: 41 Copynumber: 3.7 Consensus size: 42
80953566 ATATCGTACA
** * * *
80953576 ATGCCAAC-GTCCCAAATGTGGTCTTACATGGAGTCACATATCG
1 ATGCC-ACTGTCCCAAACATGGTCTTACA-CGAATCAAATATCG
** *
80953619 ATGCCACTGTCCCAGGCAGGGTCTTACACGAATCAAATA-CG
1 ATGCCACTGTCCCAAACATGGTCTTACACGAATCAAATATCG
** *
80953660 ATGCCGTTGTCCCAAACATGGTCTTACACGTAATGACATATATCG
1 ATGCCACTGTCCCAAACATGGTCTTACACG-AAT--CAAATATCG
* * *
80953705 ATGCCAAC-GTCCCAGACGTGGTCCTACACGA
1 ATGCC-ACTGTCCCAAACATGGTCTTACACGA
80953736 GAACACATAT
Statistics
Matches: 92, Mismatches: 19, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
41 27 0.29
42 13 0.14
43 20 0.22
44 6 0.07
45 26 0.28
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (42 bp):
ATGCCACTGTCCCAAACATGGTCTTACACGAATCAAATATCG
Found at i:80956242 original size:13 final size:13
Alignment explanation
Indices: 80956224--80956249 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
80956214 GCCAAGCACA
80956224 AGCCTATGTCCCT
1 AGCCTATGTCCCT
80956237 AGCCTATGTCCCT
1 AGCCTATGTCCCT
80956250 CACACGGCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.15, T:0.31
Consensus pattern (13 bp):
AGCCTATGTCCCT
Found at i:80964611 original size:24 final size:24
Alignment explanation
Indices: 80964566--80964612 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
80964556 TATACATTAA
* *
80964566 CAAAGTATCATTCAATTTCCAAGC
1 CAAAATATCATTCAATTACCAAGC
80964590 CAAAATATCATT-ATATTACCAAG
1 CAAAATATCATTCA-ATTACCAAG
80964613 TACATTTACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.43, C:0.21, G:0.06, T:0.30
Consensus pattern (24 bp):
CAAAATATCATTCAATTACCAAGC
Found at i:80966858 original size:20 final size:21
Alignment explanation
Indices: 80966820--80966858 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
80966810 CATGTAACGT
*
80966820 TCATATCCACTCGAATTTTTC
1 TCATATCCACTCAAATTTTTC
80966841 TCATATCCA-TCAAATTTT
1 TCATATCCACTCAAATTTT
80966859 GGGTATGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.28, C:0.26, G:0.03, T:0.44
Consensus pattern (21 bp):
TCATATCCACTCAAATTTTTC
Found at i:80972343 original size:48 final size:47
Alignment explanation
Indices: 80972177--80972345 Score: 196
Period size: 48 Copynumber: 3.6 Consensus size: 47
80972167 TGATATGTGT
* * *
80972177 GCTAGTGTAAGACATGTCTGGTACATGCATCGGCCTTGAGATATTTAG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATA-TAAA
* * ** *
80972225 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGA-CGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATAAA
* *
80972271 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGCGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATA-AA
* * *
80972319 GCTAGTGTAAGACCTATCTCGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
80972346 GCGTCAGCTT
Statistics
Matches: 101, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
46 37 0.37
47 1 0.01
48 63 0.62
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATAAA
Found at i:80972467 original size:49 final size:47
Alignment explanation
Indices: 80972180--80972494 Score: 171
Period size: 48 Copynumber: 6.7 Consensus size: 47
80972170 TATGTGTGCT
* * * ** *
80972180 AGTGTAAGACATGTCTGGTACAT-GCATCGGCCTTGAGATATTTAGGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGG-CTT-CGATATGAAAGCC
* * * * *
80972228 AGTGTAAGACATGTCTGGGACAT-GCATCGGCATT-GAGACGAGAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGGC-TTCGATATGAAAGCC
* * *
80972274 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGCGATAT-ACAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGG-CT-TCGATATGA-AAGCC
* * * * * *
80972322 AGTGTAAGACCTATCTCGGACATGGCGTCAGCTT-G-TATG--TGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGGCTTCGATATGAAAGCC
* * * * * ** * * *
80972365 AGTGTAAGACCTATTTAGGACATGACATCGACACCAATAGATGAGAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGGCTTCGAT--ATGAAAGCC
*
80972414 AGTGTAAGACCTGTCTAGGACATGGCATCGGCTTCGCTATATGAAAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGGCTTCG--ATATGAAAGCC
* *
80972463 AGTGTAAAACCATGTCTGGGACATGGCGTCGG
1 AGTGTAAGACC-TGTCTGGGACATGGCATCGG
80972495 TATCTTAACC
Statistics
Matches: 206, Mismatches: 45, Indels: 30
0.73 0.16 0.11
Matches are distributed among these distances:
43 27 0.13
45 4 0.02
46 37 0.18
47 6 0.03
48 60 0.29
49 52 0.25
50 18 0.09
51 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGGCTTCGATATGAAAGCC
Found at i:80973721 original size:20 final size:21
Alignment explanation
Indices: 80973682--80973721 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
80973672 GTTATAATGA
*
80973682 CCACACGGGCGTGTTGCCCTT
1 CCACACGGACGTGTTGCCCTT
80973703 CCACACGGACGTG-TGCCCT
1 CCACACGGACGTGTTGCCCT
80973722 GTTTGAAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.12, C:0.40, G:0.28, T:0.20
Consensus pattern (21 bp):
CCACACGGACGTGTTGCCCTT
Found at i:80974718 original size:26 final size:26
Alignment explanation
Indices: 80974689--80974796 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
80974679 TGGTACAAAT
*
80974689 TGATAATGGGTTAAGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
80974715 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80974741 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
80974767 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80974793 TGAT
1 TGAT
80974797 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:80976481 original size:54 final size:54
Alignment explanation
Indices: 80976390--80976533 Score: 200
Period size: 54 Copynumber: 2.7 Consensus size: 54
80976380 TGGAGGAAGC
* * *
80976390 GTCCTGGTGGCTATGCCATAATTATCTAATCTAGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
80976444 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCTACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * * *
80976498 GTTCTGGTGGCTCTACTACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
80976534 ACTTCGTCAC
Statistics
Matches: 81, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
53 6 0.07
54 75 0.93
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:80976510 original size:27 final size:26
Alignment explanation
Indices: 80976393--80976551 Score: 140
Period size: 27 Copynumber: 5.9 Consensus size: 26
80976383 AGGAAGCGTC
* * **
80976393 CTGGTGGCTATGCCATAATTATCTAAT
1 CTGGTGGCTCTGCCACAA-TATCTGTT
* *
80976420 CTAGTGGCTCTGCCACATATATCTGTC
1 CTGGTGGCTCTGCCACA-ATATCTGTT
* *
80976447 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAA-TATCTGTT
*
80976474 CTGGTGGCTCTGCTACATATATCTGTT
1 CTGGTGGCTCTGCCACA-ATATCTGTT
* *
80976501 CTGGTGGCTCTACTACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGT-T
* *
80976528 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
80976552 GCAGCCTCGC
Statistics
Matches: 109, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
26 10 0.09
27 97 0.89
28 2 0.02
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATATCTGTT
Found at i:80984060 original size:49 final size:50
Alignment explanation
Indices: 80984001--80984133 Score: 153
Period size: 49 Copynumber: 2.7 Consensus size: 50
80983991 TGTGGTGTGT
*
80984001 CAATGTAAGACCTGTATGGGACATGGCATCGACAC-CGATAGATGAGAGA
1 CAATGTAAGACCTGTATGGGACATGGCATCGACACTCGATAGATGAAAGA
* * * * * * *
80984050 CAGTGTAAGACCTTTTTGGGACATGGCATCGGC-CTCGCTATATGAAAGC
1 CAATGTAAGACCTGTATGGGACATGGCATCGACACTCGATAGATGAAAGA
* *
80984099 CAATGTAAGACCATGTCTGGGACATGGCGTCGACA
1 CAATGTAAGACC-TGTATGGGACATGGCATCGACA
80984134 TCTTAACCCA
Statistics
Matches: 68, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
48 1 0.01
49 50 0.74
50 17 0.25
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (50 bp):
CAATGTAAGACCTGTATGGGACATGGCATCGACACTCGATAGATGAAAGA
Found at i:80988624 original size:25 final size:25
Alignment explanation
Indices: 80988594--80988641 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
80988584 TAGATTACTT
80988594 TGCCAC-TATGGCTTTCCAAATAATA
1 TGCCACATA-GGCTTTCCAAATAATA
*
80988619 TGCCACATAGGCTTTTCAAATAA
1 TGCCACATAGGCTTTCCAAATAA
80988642 CTAGCTACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 19 0.90
26 2 0.10
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.31
Consensus pattern (25 bp):
TGCCACATAGGCTTTCCAAATAATA
Found at i:80988655 original size:25 final size:25
Alignment explanation
Indices: 80988594--80988656 Score: 65
Period size: 25 Copynumber: 2.5 Consensus size: 25
80988584 TAGATTACTT
* *
80988594 TGCCACTATGGCTTTCCAAATAATA
1 TGCCACAAAGGCTTTCCAAATAATA
* *
80988619 TGCCACATAGGCTTTTCAAATAACTA
1 TGCCACAAAGGCTTTCCAAATAA-TA
*
80988645 -GCTACAAAGGCT
1 TGCCACAAAGGCT
80988657 CTCCTCATGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
25 29 0.94
26 2 0.06
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (25 bp):
TGCCACAAAGGCTTTCCAAATAATA
Found at i:80992507 original size:30 final size:30
Alignment explanation
Indices: 80992435--80992508 Score: 121
Period size: 30 Copynumber: 2.5 Consensus size: 30
80992425 CGTGTGGACT
80992435 ACACGGGTGTGTGGGCCACACAAGTGAACC
1 ACACGGGTGTGTGGGCCACACAAGTGAACC
* *
80992465 ACACAGGCGTGTGGGCCACACAAGTGAACC
1 ACACGGGTGTGTGGGCCACACAAGTGAACC
*
80992495 ACATGGGTGTGTGG
1 ACACGGGTGTGTGG
80992509 ATATTCGAGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.26, C:0.24, G:0.35, T:0.15
Consensus pattern (30 bp):
ACACGGGTGTGTGGGCCACACAAGTGAACC
Found at i:80993163 original size:30 final size:30
Alignment explanation
Indices: 80993090--80993152 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
80993080 CGTATGGGCT
*
80993090 ACACGGGCGTGTGGACCACACAAGTGAACC
1 ACACAGGCGTGTGGACCACACAAGTGAACC
*
80993120 ACACAGGCGTGTGGGCCACACAAGTGAACC
1 ACACAGGCGTGTGGACCACACAAGTGAACC
80993150 ACA
1 ACA
80993153 TGTGTGTGTG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.32, C:0.30, G:0.29, T:0.10
Consensus pattern (30 bp):
ACACAGGCGTGTGGACCACACAAGTGAACC
Found at i:80993660 original size:655 final size:655
Alignment explanation
Indices: 80992411--80993719 Score: 2030
Period size: 655 Copynumber: 2.0 Consensus size: 655
80992401 CGACTGTGTG
* * *
80992411 AGGACTGGTGAGGCCGTGTGGACTACACGGGTGTGTGGGCCACACAAGTGAACCACACAGGCGTG
1 AGGACTGGTGAGGCCGTATGGACTACACGGGCGTGTGGACCACACAAGTGAACCACACAGGCGTG
* *
80992476 TGGGCCACACAAGTGAACCACATGGGTGTGTGGATATTCGAGCTAGGCCATGTGTTCCACACAGC
66 TGGGCCACACAAGTGAACCACATGGGTGTGTGGAAATTCGAGCCAGGCCATGTGTTCCACACAGC
*
80992541 CAAGGCCAATTTGGGCCGTGTGGGCCCAAATGGACAGGCCACATAGGCGTGTGAGCCCATTTTTC
131 CAAGGCCAATTTGAGCCGTGTGGGCCCAAATGGACAGGCCACATAGGCGTGTGAGCCCATTTTTC
* *
80992606 TGCAATGTTCTATAAGGTTGCACGGGTCGCCCAAGGTGACTGTGACCTGTCGTAGGGTCGGTAAG
196 TGCAATGTTCTATAAGGTTGCACAGGTCGCCCAAGGTGACTGTGACCTGTCGTAGGGTCAGTAAG
*
80992671 CCTTACTTAGACCCTTGTTTCTGTGATTTGATATTACATTGCACGTGTTAATATATATTATATCT
261 CCTTACTTAGACCCTTGTTTCTGTGATATGATATTACATTGCACGTGTTAATATATATTATATCT
80992736 AGCATGTATCTAAGTAATGTTCTGAATATAAACGTATGATCTGTTTACCTGCATTATAGCATGCC
326 AGCATGTATCTAAGTAATGTTCTGAATATAAACGTATGATCTGTTTACCTGCATTATAGCATGCC
* * * *
80992801 ACATTGTATGATGTATTGCATTGGGGTGGGTTTGATGAAGTGAAAGAAGTTTCTAAAAGGCTTCA
391 ACATTGTATGATGCATTGCATCGGGGTGGGTTTGATGAAGTGAAAGAAGTATCTAAAAGGCCTCA
* * * *
80992866 TAAGCCTATTATCTAGCAACTGAGATGCATATTTATAACATGTGTTGCATTATAGTACTTTATGG
456 TAAGCCTATTATCTAGCAACTAAGATGCATATTTATAACATGTGCTGCACTACAGTACTTTATGG
* * * *
80992931 TGTGTAGGGTTGGATGGGTCGATTTTATCCGCATATTAGGTGTACAGGGATAGGTGGGTCGATTT
521 TGTGTAAGGTTGGATGGGTCAATTTTATCCCCATATTAGGTGTACAGGGATAGGTGGGTCGAATT
* * *
80992996 TATCCCCACATGGTGTATTGGGTTAGACGGAGTTGGTGTGCAGGGTTGGTGGGCATGTTCTATTA
586 TATCCCCACATGGTGTATTGGGTTAGACGAAGTTGGTGTGCAAGGTTGGTGGACATGTTCTATTA
80993061 TTCTC
651 TTCTC
*
80993066 AGGACTGGTGAGGCCGTATGGGCTACACGGGCGTGTGGACCACACAAGTGAACCACACAGGCGTG
1 AGGACTGGTGAGGCCGTATGGACTACACGGGCGTGTGGACCACACAAGTGAACCACACAGGCGTG
*
80993131 TGGGCCACACAAGTGAACCACATGTGTGTGTGGAAATTCGAGCCAGGCCATGTGTTCCACAC-GA
66 TGGGCCACACAAGTGAACCACATGGGTGTGTGGAAATTCGAGCCAGGCCATGTGTTCCACACAG-
* * * * *
80993195 CCAAGGCTAATTTTAGCCGTGTGGGCCCAAATGGACAGGCCATATGGGCGTGTGAGCCTATTTTT
130 CCAAGGCCAATTTGAGCCGTGTGGGCCCAAATGGACAGGCCACATAGGCGTGTGAGCCCATTTTT
* * * * * *
80993260 TTGCAATGTTCTCTAAGGTTGCGCAGGTGGCCCAA-GTCGACTGTGACTTGTCGTAGGTTCAGTA
195 CTGCAATGTTCTATAAGGTTGCACAGGTCGCCCAAGGT-GACTGTGACCTGTCGTAGGGTCAGTA
* * * ***
80993324 GGCCTTGCTTAGACCTTTGTTTCTGTGATATGATATTTTGTTGCACGTGTTAATATATATTATAT
259 AGCCTTACTTAGACCCTTGTTTCTGTGATATGATATTACATTGCACGTGTTAATATATATTATAT
** *
80993389 CTAGCATGTATCTCTGTACTGTTCTGAATATAAACGTATGATCTGTTTACCTGCATTATAGCATG
324 CTAGCATGTATCTAAGTAATGTTCTGAATATAAACGTATGATCTGTTTACCTGCATTATAGCATG
* *
80993454 CCACATTGTATGATGCATTGCATCGGGGTGGGTTTGATGAAGTGAATGAAGTATCTGAAAGGCCT
389 CCACATTGTATGATGCATTGCATCGGGGTGGGTTTGATGAAGTGAAAGAAGTATCTAAAAGGCCT
* * * * *
80993519 CATAAGCCTATTAT-TAGGCAGCTAAGCTGCATATTTATTACATGTGCTGCACTGCAGTTCTTTA
454 CATAAGCCTATTATCTA-GCAACTAAGATGCATATTTATAACATGTGCTGCACTACAGTACTTTA
** *
80993583 TGGTGTGTAAGGTTGGATGGGTCAATTTTATCCCCATATTAGGTGTGTAGGGATGGGTGGGTCGA
518 TGGTGTGTAAGGTTGGATGGGTCAATTTTATCCCCATATTAGGTGTACAGGGATAGGTGGGTCGA
* * * *
80993648 ATTTATCCCCACATGGTGTGTTGGGTTGGACGAAGTTGGTGTGCAAGGTTGGTGGACATGTTTTG
583 ATTTATCCCCACATGGTGTATTGGGTTAGACGAAGTTGGTGTGCAAGGTTGGTGGACATGTTCTA
80993713 TTATTCT
648 TTATTCT
80993720 ATCTATTATG
Statistics
Matches: 591, Mismatches: 60, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
654 5 0.01
655 586 0.99
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (655 bp):
AGGACTGGTGAGGCCGTATGGACTACACGGGCGTGTGGACCACACAAGTGAACCACACAGGCGTG
TGGGCCACACAAGTGAACCACATGGGTGTGTGGAAATTCGAGCCAGGCCATGTGTTCCACACAGC
CAAGGCCAATTTGAGCCGTGTGGGCCCAAATGGACAGGCCACATAGGCGTGTGAGCCCATTTTTC
TGCAATGTTCTATAAGGTTGCACAGGTCGCCCAAGGTGACTGTGACCTGTCGTAGGGTCAGTAAG
CCTTACTTAGACCCTTGTTTCTGTGATATGATATTACATTGCACGTGTTAATATATATTATATCT
AGCATGTATCTAAGTAATGTTCTGAATATAAACGTATGATCTGTTTACCTGCATTATAGCATGCC
ACATTGTATGATGCATTGCATCGGGGTGGGTTTGATGAAGTGAAAGAAGTATCTAAAAGGCCTCA
TAAGCCTATTATCTAGCAACTAAGATGCATATTTATAACATGTGCTGCACTACAGTACTTTATGG
TGTGTAAGGTTGGATGGGTCAATTTTATCCCCATATTAGGTGTACAGGGATAGGTGGGTCGAATT
TATCCCCACATGGTGTATTGGGTTAGACGAAGTTGGTGTGCAAGGTTGGTGGACATGTTCTATTA
TTCTC
Found at i:81011193 original size:28 final size:28
Alignment explanation
Indices: 81011097--81011412 Score: 414
Period size: 27 Copynumber: 11.5 Consensus size: 28
81011087 ATATTGAGTC
* * *
81011097 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAGTCAAACT
* * *
81011124 TGCACACTTAGTGCTACGTAATCAAA-T
1 CGCACACTTAGTGCTACATAGTCAAACT
*
81011151 CTCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
81011179 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
81011207 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
81011235 CGCACACTTAGTGCTACATAGTC-AACT
1 CGCACACTTAGTGCTACATAGTCAAACT
81011262 CGCACACTTAGTGCTACATAGTC-AACT
1 CGCACACTTAGTGCTACATAGTCAAACT
81011289 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
** * *
81011317 CGCACACTTAGTGCCGCATGGTC-AATT
1 CGCACACTTAGTGCTACATAGTCAAACT
* **
81011344 CGCACACTTAGTGC-ATCATATTC-ATTT
1 CGCACACTTAGTGCTA-CATAGTCAAACT
*
81011371 CGCACACTTAGTGCAACATAGTCAAA-T
1 CGCACACTTAGTGCTACATAGTCAAACT
81011398 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81011413 GTACAATTTC
Statistics
Matches: 261, Mismatches: 22, Indels: 12
0.88 0.07 0.04
Matches are distributed among these distances:
27 156 0.60
28 105 0.40
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAGTCAAACT
Found at i:81011315 original size:82 final size:81
Alignment explanation
Indices: 81011097--81011412 Score: 436
Period size: 82 Copynumber: 3.9 Consensus size: 81
81011087 ATATTGAGTC
* * * * *
81011097 CGCACACTCAGTGCTATATAATCAACTTGCACACTTAGTGCTACGTAATCAAATCTCACACTTAG
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAG
81011162 TGCTACATAGTCAAACT
66 TGCTACATAGTC-AACT
81011179 CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCTACATAATCAAA-TCGCACACTT
81011244 AGTGCTACATAGTCAACT
64 AGTGCTACATAGTCAACT
* *
81011262 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAA-TCGCACACTTA
** * *
81011327 GTGCCGCATGGTCAATT
65 GTGCTACATAGTCAACT
* ** * *
81011344 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTA
81011408 GTGCT
65 GTGCT
81011413 GTACAATTTC
Statistics
Matches: 215, Mismatches: 16, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
81 16 0.07
82 122 0.57
83 54 0.25
84 23 0.11
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (81 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAG
TGCTACATAGTCAACT
Found at i:81019568 original size:24 final size:25
Alignment explanation
Indices: 81019536--81019598 Score: 85
Period size: 24 Copynumber: 2.6 Consensus size: 25
81019526 TCAACCGTAT
* * *
81019536 TCGCACACATAGTGCTA-ATTACAC
1 TCGCACACATAGTGCCATAGTAAAC
81019560 TCGCACACATAGTGCCATAGTAAAC
1 TCGCACACATAGTGCCATAGTAAAC
81019585 T-GCACACATAGTGC
1 TCGCACACATAGTGC
81019599 ATTGGATTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
24 29 0.83
25 6 0.17
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (25 bp):
TCGCACACATAGTGCCATAGTAAAC
Found at i:81023681 original size:20 final size:20
Alignment explanation
Indices: 81023658--81023703 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
81023648 GAAAAAAGGA
**
81023658 AATTTAAGGGAAAAAGTGTG
1 AATTTAAGGGAAAAAACGTG
81023678 AA-TTAAGGGAAAAAACGTG
1 AATTTAAGGGAAAAAACGTG
81023697 AATTTAA
1 AATTTAA
81023704 AGTTAAATTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 17 0.74
20 6 0.26
ACGTcount: A:0.50, C:0.02, G:0.24, T:0.24
Consensus pattern (20 bp):
AATTTAAGGGAAAAAACGTG
Found at i:81023898 original size:10 final size:10
Alignment explanation
Indices: 81023879--81023929 Score: 57
Period size: 10 Copynumber: 5.0 Consensus size: 10
81023869 AATTTTAGCT
*
81023879 TTTATCTTTA
1 TTTATTTTTA
81023889 TTTATTTTTA
1 TTTATTTTTA
* *
81023899 ATTATCTTTA
1 TTTATTTTTA
*
81023909 TTTATTTGTA
1 TTTATTTTTA
81023919 TTTATCTTTTA
1 TTTAT-TTTTA
81023930 GAATTTAATT
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
10 29 0.88
11 4 0.12
ACGTcount: A:0.22, C:0.06, G:0.02, T:0.71
Consensus pattern (10 bp):
TTTATTTTTA
Found at i:81023905 original size:20 final size:20
Alignment explanation
Indices: 81023880--81023927 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
81023870 ATTTTAGCTT
*
81023880 TTATCTTTATTTATTTTTAA
1 TTATCTTTATTTATTTGTAA
*
81023900 TTATCTTTATTTATTTGTAT
1 TTATCTTTATTTATTTGTAA
81023920 TTATCTTT
1 TTATCTTT
81023928 TAGAATTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.21, C:0.06, G:0.02, T:0.71
Consensus pattern (20 bp):
TTATCTTTATTTATTTGTAA
Found at i:81028595 original size:20 final size:20
Alignment explanation
Indices: 81028570--81028609 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
81028560 CTATAGAAAA
81028570 AGAACTCTTAGCTATTGTAT
1 AGAACTCTTAGCTATTGTAT
81028590 AGAACTCTTAGCTATTGTAT
1 AGAACTCTTAGCTATTGTAT
81028610 TTGCTTTGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.40
Consensus pattern (20 bp):
AGAACTCTTAGCTATTGTAT
Found at i:81030231 original size:13 final size:12
Alignment explanation
Indices: 81030207--81030240 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
81030197 ATTTCAATTA
81030207 TATTAAGATAAT
1 TATTAAGATAAT
81030219 TATTAAGGATAAT
1 TATTAA-GATAAT
*
81030232 TATTTAGAT
1 TATTAAGAT
81030241 TTAATTTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (12 bp):
TATTAAGATAAT
Found at i:81030272 original size:10 final size:10
Alignment explanation
Indices: 81030253--81030302 Score: 55
Period size: 10 Copynumber: 4.9 Consensus size: 10
81030243 AATTTTAGCT
*
81030253 TTTATCTTTA
1 TTTATTTTTA
81030263 TTTATTTTTA
1 TTTATTTTTA
* *
81030273 ATTATCTTTA
1 TTTATTTTTA
*
81030283 TTTATTTGTA
1 TTTATTTTTA
81030293 TTTATCTTTT
1 TTTAT-TTTT
81030303 GAAATTTAAT
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
10 29 0.91
11 3 0.09
ACGTcount: A:0.20, C:0.06, G:0.02, T:0.72
Consensus pattern (10 bp):
TTTATTTTTA
Found at i:81030279 original size:20 final size:20
Alignment explanation
Indices: 81030254--81030301 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
81030244 ATTTTAGCTT
*
81030254 TTATCTTTATTTATTTTTAA
1 TTATCTTTATTTATTTGTAA
*
81030274 TTATCTTTATTTATTTGTAT
1 TTATCTTTATTTATTTGTAA
81030294 TTATCTTT
1 TTATCTTT
81030302 TGAAATTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.21, C:0.06, G:0.02, T:0.71
Consensus pattern (20 bp):
TTATCTTTATTTATTTGTAA
Found at i:81042371 original size:24 final size:25
Alignment explanation
Indices: 81042343--81042397 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 25
81042333 CAATTTCTAC
*
81042343 ATCAATCACATATATC-CATAT-AA
1 ATCAATCAAATATATCACATATCAA
*
81042366 ATTCAAT-AAATTTATCACATATCAA
1 A-TCAATCAAATATATCACATATCAA
81042391 ATCAATC
1 ATCAATC
81042398 CATTTCAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
23 8 0.31
24 15 0.58
25 3 0.12
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (25 bp):
ATCAATCAAATATATCACATATCAA
Found at i:81043173 original size:13 final size:13
Alignment explanation
Indices: 81043155--81043179 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81043145 CTAATTTCCC
81043155 TTTCTTTCTTTCT
1 TTTCTTTCTTTCT
81043168 TTTCTTTCTTTC
1 TTTCTTTCTTTC
81043180 CTTCTTTTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTCTTTCTTTCT
Found at i:81043176 original size:17 final size:17
Alignment explanation
Indices: 81043154--81043240 Score: 72
Period size: 17 Copynumber: 5.0 Consensus size: 17
81043144 CCTAATTTCC
81043154 CTTTCTTTCTTTCTTTT
1 CTTTCTTTCTTTCTTTT
*
81043171 CTTTCTTTCCTTCTTTT
1 CTTTCTTTCTTTCTTTT
* *
81043188 CTTCTCTAT-TTTCGTTTCA
1 CTT-TCTTTCTTTC-TTT-T
*
81043207 CTTTC--TGTTTCTTTT
1 CTTTCTTTCTTTCTTTT
81043222 CTATTCTTTCATTTCTTTT
1 CT-TTCTTTC-TTTCTTTT
81043241 ATTATTTTGT
Statistics
Matches: 56, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
15 2 0.04
16 7 0.12
17 26 0.46
18 10 0.18
19 11 0.20
ACGTcount: A:0.05, C:0.24, G:0.02, T:0.69
Consensus pattern (17 bp):
CTTTCTTTCTTTCTTTT
Found at i:81043191 original size:8 final size:9
Alignment explanation
Indices: 81043154--81043239 Score: 54
Period size: 9 Copynumber: 9.4 Consensus size: 9
81043144 CCTAATTTCC
81043154 CTTTC-TTT
1 CTTTCTTTT
81043162 CTTTCTTTT
1 CTTTCTTTT
81043171 CTTTC-TTT
1 CTTTCTTTT
*
81043179 CCTTCTTTT
1 CTTTCTTTT
*
81043188 C-TTCTCTAT
1 CTTTCT-TTT
*
81043197 -TTTCGTTTCA
1 CTTTC-TTT-T
81043207 CTTTCTGTTT
1 CTTTCT-TTT
*
81043217 CTTTTCTATT
1 C-TTTCTTTT
*
81043227 CTTTCATTT
1 CTTTCTTTT
81043236 CTTT
1 CTTT
81043240 TATTATTTTG
Statistics
Matches: 61, Mismatches: 8, Indels: 17
0.71 0.09 0.20
Matches are distributed among these distances:
8 16 0.26
9 28 0.46
10 6 0.10
11 11 0.18
ACGTcount: A:0.05, C:0.24, G:0.02, T:0.69
Consensus pattern (9 bp):
CTTTCTTTT
Found at i:81044500 original size:19 final size:20
Alignment explanation
Indices: 81044476--81044514 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
81044466 TACTTTAACA
81044476 TTACTA-GTTATATATATTT
1 TTACTACGTTATATATATTT
* *
81044495 TTACTACTTTATGTATATTT
1 TTACTACGTTATATATATTT
81044515 CAAATATTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.28, C:0.08, G:0.05, T:0.59
Consensus pattern (20 bp):
TTACTACGTTATATATATTT
Found at i:81069861 original size:77 final size:75
Alignment explanation
Indices: 81069739--81070010 Score: 317
Period size: 73 Copynumber: 3.7 Consensus size: 75
81069729 TGATGTTTTT
* * * * * *
81069739 ATTTCTGT-TTTC--AAAATTCAATTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGA
1 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGA
*
81069801 GGTACTTTCA
66 GGTAATTTCA
*
81069811 ATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
1 ATTTCTGTCTTTC--AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCT
81069876 GAGGTAATTTCA
64 GAGGTAATTTCA
* * * *
81069888 AATTCTGT-TTGTC--AAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAGGGCATGCTG
1 ATTTCTGTCTT-TCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTG
81069950 AGG-AATTTTCA
65 AGGTAA-TTTCA
* *
81069961 ATTCCTG-CTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 ATTTCTGTC-TTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGC
81070011 ATTGGCTCAC
Statistics
Matches: 172, Mismatches: 17, Indels: 19
0.83 0.08 0.09
Matches are distributed among these distances:
72 10 0.06
73 64 0.37
74 2 0.01
75 33 0.19
76 2 0.01
77 61 0.35
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (75 bp):
ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGA
GGTAATTTCA
Found at i:81070037 original size:150 final size:148
Alignment explanation
Indices: 81069741--81070012 Score: 386
Period size: 150 Copynumber: 1.8 Consensus size: 148
81069731 ATGTTTTTAT
* * ** * *
81069741 TTCTGTTTTCAAAATTCAATTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAC
1 TTCTGTTTTCAAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACGCTGAGGAAC
* *
81069806 TTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
66 TTTCAATTCCTGTCTTTC-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGAC
81069871 ACGCTGAGGTAATTTCAAA
130 ACGCTGAGGTAATTTCAAA
* * * *
81069890 TTCTGTTTGTCAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAGGGCATGCTGAGGAA
1 TTCTGTTT-TCAAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACGCTGAGGAA
*
81069955 TTTTCAATTCCTG-CTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCAT
65 CTTTCAATTCCTGTC-TTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCAT
81070013 TGGCTCACAT
Statistics
Matches: 108, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
148 38 0.35
149 9 0.08
150 61 0.56
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (148 bp):
TTCTGTTTTCAAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACGCTGAGGAAC
TTTCAATTCCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGACA
CGCTGAGGTAATTTCAAA
Found at i:81070044 original size:150 final size:148
Alignment explanation
Indices: 81069739--81070048 Score: 383
Period size: 150 Copynumber: 2.1 Consensus size: 148
81069729 TGATGTTTTT
* * ** * *
81069739 ATTTCTGTTTTCAAAATTCAATTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACGCTGAGGA
* *
81069804 ACTTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
66 ACTTTCAATTCCTGTCTTTC-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGG
81069869 ACACGCTGAGGTAATTTCA
130 ACACGCTGAGGTAATTTCA
* * * * *
81069888 AATTCTGTTTGTCAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAGGGCATGCTGAGG
1 ATTTCTGTTT-TCAAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
* *
81069953 AATTTTCAATTCCTG-CTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCAT-TG
65 AACTTTCAATTCCTGTC-TTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAG
* *
81070015 GCTCACATGCTGAGGTATTTTCA
129 G---ACACGCTGAGGTAATTTCA
*
81070038 GTTTCTGTTTT
1 ATTTCTGTTTT
81070049 TTTCAATTTA
Statistics
Matches: 137, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
147 2 0.01
148 38 0.28
149 11 0.08
150 86 0.63
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (148 bp):
ATTTCTGTTTTCAAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACGCTGAGGA
ACTTTCAATTCCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGA
CACGCTGAGGTAATTTCA
Found at i:81070200 original size:172 final size:165
Alignment explanation
Indices: 81069899--81070221 Score: 411
Period size: 172 Copynumber: 1.9 Consensus size: 165
81069889 ATTCTGTTTG
*
81069899 TCAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAGGGCATGCTGAGGAATTTTCAATT
1 TCAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAGGGCATGCTGAGGAATTTTAAATT
* * *
81069964 CCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATTGGCTCACATGCTGAG
66 -CTGCTTTTCAAAAAAACCAACTCATACTGCGAGAGGTGAGTTAAGCATTGGCTCACATGCTGAG
* * *
81070029 GTATTTTCAGTTTCTGTTTTTTTCAATTTATATTTT
130 CTATTTTCAATTTCTATTTTTTTCAATTTATATTTT
* *
81070065 TCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-GGGTCACATG-TCGAGGTATTTTT
1 TCAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAGGG---CATGCT-GAGG-AATTTT
*
81070128 AAAATT-TGCTTTT-AAGTTTCAAAAACCAACTCATACTGCGAGAGGTGAGTTAAGCTTTGGCTC
61 -AAATTCTGCTTTTCAA-----AAAAACCAACTCATACTGCGAGAGGTGAGTTAAGCATTGGCTC
*
81070191 ACGTGCTGAGCTATTTTCAATTTCTATTTTT
120 ACATGCTGAGCTATTTTCAATTTCTATTTTT
81070222 AATGTGTGTT
Statistics
Matches: 135, Mismatches: 11, Indels: 16
0.83 0.07 0.10
Matches are distributed among these distances:
165 3 0.02
166 39 0.29
167 3 0.02
168 15 0.11
169 5 0.04
170 4 0.03
172 66 0.49
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.36
Consensus pattern (165 bp):
TCAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAGGGCATGCTGAGGAATTTTAAATT
CTGCTTTTCAAAAAAACCAACTCATACTGCGAGAGGTGAGTTAAGCATTGGCTCACATGCTGAGC
TATTTTCAATTTCTATTTTTTTCAATTTATATTTT
Found at i:81072152 original size:258 final size:260
Alignment explanation
Indices: 81071671--81072179 Score: 914
Period size: 258 Copynumber: 2.0 Consensus size: 260
81071661 TGGCATCATA
* *
81071671 CGATCGCCTGACCCGAACCCCGACCCGAAGACCGCCTAGGATCTGCGTGTTTTTGGACTGAGGGG
1 CGATCGCCTGACCCGAACCCCGACCCGAAGACCGCCTAGGATCCGCATGTTTTTGGACTGAGGGG
*
81071736 CTATTTGTGCCCTCAGTCGCTTCCGCCTTTGAGGATGGTTTTAATGTAGTCCCCTTTTACTTTTA
66 CTATTTGCGCCCTCAGTCGCTTCCGCCTTTGAGGATGGTTTTAATGTAGTCCCCTTTTACTTTTA
*
81071801 TTTCTTTTAATTTCCCCCTGAAATTTCTTTACTGTTTTATTTTGGTCCCTGATCGAGCGGTGCAT
131 TTTCTTTTAATTTCCCCCTAAAATTTCTTTACTGTTTTATTTTGGTCCCTGATCGAGCGGTGCAT
*
81071866 TTTGAGTGGACGGGTTTATTACCCATTTGGTCCTCCTTGGTTTTTCATGCATTCGCGGCGTCGTT
196 TTTGAGTGGACGGGTTTATTAACCATTTGGTCCTCCTTGGTTTTTCATGCATTCGCGGCGTCGTT
* * *
81071931 CGATCTCCTGACCCGAACCCCGACCCGAAGACCGCCTAGGATCCGCATGTTTTTGGGCTGATGGG
1 CGATCGCCTGACCCGAACCCCGACCCGAAGACCGCCTAGGATCCGCATGTTTTTGGACTGAGGGG
*
81071996 CTATTTGCGCCCTCAGTCGC-TCCGCCTTTGAGGATGGTTTTAATGTGGTCCCCTTTTACTTTTA
66 CTATTTGCGCCCTCAGTCGCTTCCGCCTTTGAGGATGGTTTTAATGTAGTCCCCTTTTACTTTTA
*
81072060 TTTCTTTTAATTT-CCCCTAAAATTTCTTTACTGTTTTATTTTGGTCCCTGATTGAGCGGTGCAT
131 TTTCTTTTAATTTCCCCCTAAAATTTCTTTACTGTTTTATTTTGGTCCCTGATCGAGCGGTGCAT
81072124 TTTGAGTGGACGGGTTTATTAACCATTTGGTCCTCCTTGGTTTTTCATGCATTCGC
196 TTTGAGTGGACGGGTTTATTAACCATTTGGTCCTCCTTGGTTTTTCATGCATTCGC
81072180 ATGGGTCCCT
Statistics
Matches: 239, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
258 104 0.44
259 56 0.23
260 79 0.33
ACGTcount: A:0.15, C:0.25, G:0.22, T:0.38
Consensus pattern (260 bp):
CGATCGCCTGACCCGAACCCCGACCCGAAGACCGCCTAGGATCCGCATGTTTTTGGACTGAGGGG
CTATTTGCGCCCTCAGTCGCTTCCGCCTTTGAGGATGGTTTTAATGTAGTCCCCTTTTACTTTTA
TTTCTTTTAATTTCCCCCTAAAATTTCTTTACTGTTTTATTTTGGTCCCTGATCGAGCGGTGCAT
TTTGAGTGGACGGGTTTATTAACCATTTGGTCCTCCTTGGTTTTTCATGCATTCGCGGCGTCGTT
Found at i:81072393 original size:49 final size:50
Alignment explanation
Indices: 81072328--81072426 Score: 173
Period size: 49 Copynumber: 2.0 Consensus size: 50
81072318 GTATTATTTG
* *
81072328 CATTATTTTGTTTATTTATATGTTGTAGTCTGATTAATTGTAAATTTATC
1 CATTATTTTGATTATTTATATGTTGTAGTCTAATTAATTGTAAATTTATC
81072378 CATTATTTT-ATTATTTATATGTTGTAGTCTAATTAATTGTAAATTTATC
1 CATTATTTTGATTATTTATATGTTGTAGTCTAATTAATTGTAAATTTATC
81072427 TTGTACGCAT
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
49 38 0.81
50 9 0.19
ACGTcount: A:0.28, C:0.06, G:0.10, T:0.56
Consensus pattern (50 bp):
CATTATTTTGATTATTTATATGTTGTAGTCTAATTAATTGTAAATTTATC
Found at i:81072457 original size:19 final size:18
Alignment explanation
Indices: 81072433--81072485 Score: 65
Period size: 16 Copynumber: 3.0 Consensus size: 18
81072423 TATCTTGTAC
*
81072433 GCATTATTCTATATTTTAT
1 GCATTATTAT-TATTTTAT
81072452 GCATTATTATTATTTTA-
1 GCATTATTATTATTTTAT
*
81072469 CCA-TATTATTATTTTAT
1 GCATTATTATTATTTTAT
81072486 ATATTATTGC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
16 13 0.42
17 2 0.06
18 7 0.23
19 9 0.29
ACGTcount: A:0.28, C:0.09, G:0.04, T:0.58
Consensus pattern (18 bp):
GCATTATTATTATTTTAT
Found at i:81072477 original size:16 final size:15
Alignment explanation
Indices: 81072456--81072493 Score: 58
Period size: 16 Copynumber: 2.5 Consensus size: 15
81072446 TTTTATGCAT
81072456 TATTATTATTTTACCA
1 TATTATTATTTTA-CA
*
81072472 TATTATTATTTTATA
1 TATTATTATTTTACA
81072487 TATTATT
1 TATTATT
81072494 GCTGTTATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (15 bp):
TATTATTATTTTACA
Found at i:81072555 original size:148 final size:148
Alignment explanation
Indices: 81072388--81072681 Score: 561
Period size: 148 Copynumber: 2.0 Consensus size: 148
81072378 CATTATTTTA
81072388 TTATTTATATGTTGTAGTCTAATTAATTGTAAATTTATCTTGTACGCATTATTCTATATTTTATG
1 TTATTTATATGTTGTAGTCTAATTAATTGTAAATTTATCTTGTACGCATTATTCTATATTTTATG
81072453 CATTATTATTATTTTACCATATTATTATTTTATATATTATTGCTGTTATTAACATACTATTATTA
66 CATTATTATTATTTTACCATATTATTATTTTATATATTATTGCTGTTATTAACATACTATTATTA
81072518 TTATTACATTTATTAAGT
131 TTATTACATTTATTAAGT
* *
81072536 TTATTTATATGTTGTAGTCTGATTAATTGTAAATTTATCTTGTACGTATTATTCTATATTTTATG
1 TTATTTATATGTTGTAGTCTAATTAATTGTAAATTTATCTTGTACGCATTATTCTATATTTTATG
*
81072601 CATTATTATTATTTTACCATATTATTATTTTATATATTATTGTTGTTATTAACATACTATTATTA
66 CATTATTATTATTTTACCATATTATTATTTTATATATTATTGCTGTTATTAACATACTATTATTA
81072666 TTATTACATTTATTAA
131 TTATTACATTTATTAA
81072682 TAATATTATT
Statistics
Matches: 143, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
148 143 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.55
Consensus pattern (148 bp):
TTATTTATATGTTGTAGTCTAATTAATTGTAAATTTATCTTGTACGCATTATTCTATATTTTATG
CATTATTATTATTTTACCATATTATTATTTTATATATTATTGCTGTTATTAACATACTATTATTA
TTATTACATTTATTAAGT
Found at i:81072625 original size:16 final size:15
Alignment explanation
Indices: 81072604--81072641 Score: 58
Period size: 16 Copynumber: 2.5 Consensus size: 15
81072594 TTTTATGCAT
81072604 TATTATTATTTTACCA
1 TATTATTATTTTA-CA
*
81072620 TATTATTATTTTATA
1 TATTATTATTTTACA
81072635 TATTATT
1 TATTATT
81072642 GTTGTTATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (15 bp):
TATTATTATTTTACA
Found at i:81072632 original size:34 final size:35
Alignment explanation
Indices: 81072592--81072689 Score: 90
Period size: 34 Copynumber: 2.7 Consensus size: 35
81072582 TATTATTCTA
* * *
81072592 TATTTTATGCATTATTATTATT-TTACCATATTAT
1 TATTTTATACATTATTATTATTATTAACATACTAT
* * *
81072626 TATTTTATATATTATTGTTGTTATTAACATACTAT
1 TATTTTATACATTATTATTATTATTAACATACTAT
* *
81072661 TATTATTATTACATTTATTAATAATATTA
1 TATT-TTA-TACA-TTATTATTATTATTA
81072690 TTAGAACTAG
Statistics
Matches: 49, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
34 18 0.37
35 14 0.29
36 3 0.06
37 3 0.06
38 11 0.22
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (35 bp):
TATTTTATACATTATTATTATTATTAACATACTAT
Found at i:81074255 original size:28 final size:28
Alignment explanation
Indices: 81074215--81074284 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 28
81074205 GCAATCAAAT
* *
81074215 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* **
81074243 ATGGCACTTAGTGTGCGAGCTATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
*
81074271 ATGACACTTAGTGT
1 ATGGCACTTAGTGT
81074285 GCAAAAGACC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:81076335 original size:29 final size:29
Alignment explanation
Indices: 81076296--81076511 Score: 136
Period size: 29 Copynumber: 7.6 Consensus size: 29
81076286 CCGTAACCGA
81076296 GCACTGTGTGTGCGAGATTGGTTGTTGAG
1 GCACTGTGTGTGCGAGATTGGTTGTTGAG
* ****
81076325 GCACTGTGTGTGCGAG-TTCCGTAACCGA-
1 GCACTGTGTGTGCGAGATT-GGTTGTTGAG
* * * *
81076353 GCAATGTGTGTGCAAGATCGATTGTTGAG
1 GCACTGTGTGTGCGAGATTGGTTGTTGAG
*** **** *
81076382 GCACTGTGTGTGCGAG-TTCCATAACCAA
1 GCACTGTGTGTGCGAGATTGGTTGTTGAG
* *
81076410 GCACTGTGTGTGCGAGATCGGTTGTTAAG
1 GCACTGTGTGTGCGAGATTGGTTGTTGAG
* * ** * *
81076439 GCATTGTGTGTGCGAG-TTCCG-TAATCAA
1 GCACTGTGTGTGCGAGATT-GGTTGTTGAG
*
81076467 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATTGGTTGTTGAG
*
81076496 GCACTATGTGTGCGAG
1 GCACTGTGTGTGCGAG
81076512 TTCCGTAACC
Statistics
Matches: 131, Mismatches: 49, Indels: 14
0.68 0.25 0.07
Matches are distributed among these distances:
28 58 0.44
29 73 0.56
ACGTcount: A:0.19, C:0.17, G:0.35, T:0.30
Consensus pattern (29 bp):
GCACTGTGTGTGCGAGATTGGTTGTTGAG
Found at i:81076335 original size:57 final size:57
Alignment explanation
Indices: 81076266--81076556 Score: 449
Period size: 57 Copynumber: 5.1 Consensus size: 57
81076256 AAGTGAACAT
* * *
81076266 AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATTGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
* * * *
81076323 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCAATGTGTGTGCAAGATCGATTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
* *
81076380 AGGCACTGTGTGTGCGAGTTCCATAACCAAGCACTGTGTGTGCGAGATCGGTTGTTA
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
* *
81076437 AGGCATTGTGTGTGCGAGTTCCGTAATCAAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
* *
81076494 AGGCACTATGTGTGCGAGTTCCGTAACCAAG-ACTGTGTGTGCAAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
*
81076550 GGGCACT
1 AGGCACT
81076557 AAGTTTGTGA
Statistics
Matches: 214, Mismatches: 20, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
56 30 0.14
57 184 0.86
ACGTcount: A:0.19, C:0.18, G:0.34, T:0.29
Consensus pattern (57 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:81081545 original size:28 final size:28
Alignment explanation
Indices: 81081513--81081582 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
81081503 TGTGGTACTC
* *
81081513 AGTGTACGAAATATTGAGAATGGCACTT
1 AGTGTGCGAAATATTGAGAATGACACTT
*
81081541 AGTGTGCGAGATATTGAGAATGACACTT
1 AGTGTGCGAAATATTGAGAATGACACTT
*
81081569 AGTGTGCAAAATAT
1 AGTGTGCGAAATAT
81081583 CGAATGATTC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.36, C:0.10, G:0.26, T:0.29
Consensus pattern (28 bp):
AGTGTGCGAAATATTGAGAATGACACTT
Found at i:81083417 original size:21 final size:20
Alignment explanation
Indices: 81083385--81083425 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
81083375 ATTAATCTTA
* *
81083385 GTATATGTTTTATTATATAT
1 GTATATATTTTAATATATAT
81083405 GTATATATCTTTAATATATAT
1 GTATATAT-TTTAATATATAT
81083426 ATAGGTATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.34, C:0.02, G:0.07, T:0.56
Consensus pattern (20 bp):
GTATATATTTTAATATATAT
Found at i:81083740 original size:18 final size:19
Alignment explanation
Indices: 81083703--81083741 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
81083693 CACTTTAACA
*
81083703 TTACTAGTTATATATATAT
1 TTACTACTTATATATATAT
*
81083722 TTACTACTT-TATGTATAT
1 TTACTACTTATATATATAT
81083740 TT
1 TT
81083742 CAAATATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.31, C:0.08, G:0.05, T:0.56
Consensus pattern (19 bp):
TTACTACTTATATATATAT
Found at i:81089628 original size:47 final size:47
Alignment explanation
Indices: 81089550--81089846 Score: 504
Period size: 47 Copynumber: 6.3 Consensus size: 47
81089540 CCCTTCGGGA
* * * * * *
81089550 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81089597 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81089644 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81089691 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81089738 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81089785 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81089832 CTTATCACATATATA
1 CTTATCACATATATA
81089847 NNNNNNNNNN
Statistics
Matches: 237, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 237 1.00
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:81096247 original size:47 final size:47
Alignment explanation
Indices: 81096195--81096756 Score: 809
Period size: 47 Copynumber: 12.0 Consensus size: 47
81096185 TTTCACACTA
* * * * *
81096195 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* *
81096242 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
81096289 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * * *
81096336 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* *
81096383 GCCATTCAGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * * *
81096430 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* *
81096477 GCCATTCAGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * * *
81096524 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* *
81096571 GCCATTCAGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * * *
81096618 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* *
81096665 GCCATTCAGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* ***
81096712 GCCATTCGGCCTTATCACATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACAT
81096757 AAAATCCTAA
Statistics
Matches: 454, Mismatches: 61, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 454 1.00
ACGTcount: A:0.28, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
Found at i:81096283 original size:25 final size:25
Alignment explanation
Indices: 81096255--81096332 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 25
81096245 ATTCGGCCTT
81096255 ATCACACATATGCATGCTCACATTC
1 ATCACACATATGCATGCTCACATTC
* * *
81096280 AT--CACATAGGCCAT--TCGGCCTT-
1 ATCACACATATG-CATGCTC-ACATTC
*
81096302 ATCACATATATGCATGCTCACATTC
1 ATCACACATATGCATGCTCACATTC
81096327 ATCACA
1 ATCACA
81096333 TTGGCCATTC
Statistics
Matches: 39, Mismatches: 7, Indels: 14
0.65 0.12 0.23
Matches are distributed among these distances:
22 4 0.10
23 13 0.33
24 12 0.31
25 10 0.26
ACGTcount: A:0.31, C:0.31, G:0.10, T:0.28
Consensus pattern (25 bp):
ATCACACATATGCATGCTCACATTC
Found at i:81096308 original size:94 final size:94
Alignment explanation
Indices: 81096195--81096756 Score: 953
Period size: 94 Copynumber: 6.0 Consensus size: 94
81096185 TTTCACACTA
* * * * * * *
81096195 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCAGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCAC
* * * * * *
81096260 ACATATGCATGCTCACATTCATCACATAG
66 ATATATACATGTTCATATTCACCACATTG
* *
81096289 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCAGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCAC
81096354 ATATATACATGTTCATATTCACCACATTG
66 ATATATACATGTTCATATTCACCACATTG
81096383 GCCATTCAGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCAGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCAC
81096448 ATATATACATGTTCATATTCACCACATTG
66 ATATATACATGTTCATATTCACCACATTG
81096477 GCCATTCAGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCAGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCAC
81096542 ATATATACATGTTCATATTCACCACATTG
66 ATATATACATGTTCATATTCACCACATTG
81096571 GCCATTCAGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCAGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCAC
81096636 ATATATACATGTTCATATTCACCACATTG
66 ATATATACATGTTCATATTCACCACATTG
81096665 GCCATTCAGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCAGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCAC
** * *
81096730 ATATATACACATTCACATTCATCACAT
66 ATATATACATGTTCATATTCACCACAT
81096757 AAAATCCTAA
Statistics
Matches: 451, Mismatches: 17, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 451 1.00
ACGTcount: A:0.28, C:0.30, G:0.11, T:0.32
Consensus pattern (94 bp):
GCCATTCAGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCAC
ATATATACATGTTCATATTCACCACATTG
Found at i:81096401 original size:22 final size:22
Alignment explanation
Indices: 81096376--81096449 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 22
81096366 TCATATTCAC
81096376 CACATTGGCCATTCAGCCTTAT
1 CACATTGGCCATTCAGCCTTAT
*
81096398 CACACATAT-G-CATGCTCA-CATTCAT
1 --CACAT-TGGCCAT--TCAGCCTT-AT
*
81096423 CACATTGGCCATTCGGCCTTAT
1 CACATTGGCCATTCAGCCTTAT
81096445 CACAT
1 CACAT
81096450 ATATACATGT
Statistics
Matches: 40, Mismatches: 3, Indels: 16
0.68 0.05 0.27
Matches are distributed among these distances:
22 10 0.25
23 12 0.30
24 12 0.30
25 6 0.15
ACGTcount: A:0.26, C:0.32, G:0.12, T:0.30
Consensus pattern (22 bp):
CACATTGGCCATTCAGCCTTAT
Found at i:81096495 original size:22 final size:22
Alignment explanation
Indices: 81096470--81096543 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 22
81096460 TCATATTCAC
81096470 CACATTGGCCATTCAGCCTTAT
1 CACATTGGCCATTCAGCCTTAT
*
81096492 CACACATAT-G-CATGCTCA-CATTCAT
1 --CACAT-TGGCCAT--TCAGCCTT-AT
*
81096517 CACATTGGCCATTCGGCCTTAT
1 CACATTGGCCATTCAGCCTTAT
81096539 CACAT
1 CACAT
81096544 ATATACATGT
Statistics
Matches: 40, Mismatches: 3, Indels: 16
0.68 0.05 0.27
Matches are distributed among these distances:
22 10 0.25
23 12 0.30
24 12 0.30
25 6 0.15
ACGTcount: A:0.26, C:0.32, G:0.12, T:0.30
Consensus pattern (22 bp):
CACATTGGCCATTCAGCCTTAT
Found at i:81096589 original size:22 final size:22
Alignment explanation
Indices: 81096564--81096637 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 22
81096554 TCATATTCAC
81096564 CACATTGGCCATTCAGCCTTAT
1 CACATTGGCCATTCAGCCTTAT
*
81096586 CACACATAT-G-CATGCTCA-CATTCAT
1 --CACAT-TGGCCAT--TCAGCCTT-AT
*
81096611 CACATTGGCCATTCGGCCTTAT
1 CACATTGGCCATTCAGCCTTAT
81096633 CACAT
1 CACAT
81096638 ATATACATGT
Statistics
Matches: 40, Mismatches: 3, Indels: 16
0.68 0.05 0.27
Matches are distributed among these distances:
22 10 0.25
23 12 0.30
24 12 0.30
25 6 0.15
ACGTcount: A:0.26, C:0.32, G:0.12, T:0.30
Consensus pattern (22 bp):
CACATTGGCCATTCAGCCTTAT
Found at i:81096683 original size:22 final size:22
Alignment explanation
Indices: 81096658--81096731 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 22
81096648 TCATATTCAC
81096658 CACATTGGCCATTCAGCCTTAT
1 CACATTGGCCATTCAGCCTTAT
*
81096680 CACACATAT-G-CATGCTCA-CATTCAT
1 --CACAT-TGGCCAT--TCAGCCTT-AT
*
81096705 CACATTGGCCATTCGGCCTTAT
1 CACATTGGCCATTCAGCCTTAT
81096727 CACAT
1 CACAT
81096732 ATATACACAT
Statistics
Matches: 40, Mismatches: 3, Indels: 16
0.68 0.05 0.27
Matches are distributed among these distances:
22 10 0.25
23 12 0.30
24 12 0.30
25 6 0.15
ACGTcount: A:0.26, C:0.32, G:0.12, T:0.30
Consensus pattern (22 bp):
CACATTGGCCATTCAGCCTTAT
Found at i:81097348 original size:87 final size:87
Alignment explanation
Indices: 81097241--81097414 Score: 294
Period size: 87 Copynumber: 2.0 Consensus size: 87
81097231 GGCCAATCAA
* *
81097241 TACCGGATTTTTCTTAAAGTTTCCCCTGTTCCACTGTTTGACTAATCTGACCACTCTTCACTACG
1 TACCAGATTTTTCTTAAAGTTTCCCCTATTCCACTGTTTGACTAATCTGACCACTCTTCACTACG
*
81097306 AATAAAATTTCTCATTTTACAG
66 AATAAAATTTCTCATTGTACAG
*
81097328 TACCAGATTTTTCTTAAAGTTTCCCCTATTTCACTGTTTGACTAATCTGACCACTCTTCACTACG
1 TACCAGATTTTTCTTAAAGTTTCCCCTATTCCACTGTTTGACTAATCTGACCACTCTTCACTACG
* *
81097393 AATCAAATTTTTCATTGTACAG
66 AATAAAATTTCTCATTGTACAG
81097415 AATTCATAAT
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 81 1.00
ACGTcount: A:0.26, C:0.25, G:0.10, T:0.40
Consensus pattern (87 bp):
TACCAGATTTTTCTTAAAGTTTCCCCTATTCCACTGTTTGACTAATCTGACCACTCTTCACTACG
AATAAAATTTCTCATTGTACAG
Found at i:81108152 original size:4 final size:4
Alignment explanation
Indices: 81108143--81108180 Score: 51
Period size: 4 Copynumber: 9.5 Consensus size: 4
81108133 CCTAATTTCC
*
81108143 CTTT CTTT CTTT CTTTT CTTT CTTT CCTT CTTT -TTT CT
1 CTTT CTTT CTTT C-TTT CTTT CTTT CTTT CTTT CTTT CT
81108181 CTGTTTTCGT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
3 3 0.10
4 23 0.77
5 4 0.13
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (4 bp):
CTTT
Found at i:81108160 original size:9 final size:9
Alignment explanation
Indices: 81108143--81108236 Score: 50
Period size: 9 Copynumber: 10.0 Consensus size: 9
81108133 CCTAATTTCC
81108143 CTTTC-TTT
1 CTTTCTTTT
81108151 CTTTCTTTT
1 CTTTCTTTT
*
81108160 CTTTCTTTC
1 CTTTCTTTT
*
81108169 CTTCTTTTTT
1 CTT-TCTTTT
* *
81108179 CTCTGTTTT
1 CTTTCTTTT
*
81108188 CGTTTCACATTCT
1 C-TTT--C-TTTT
*
81108201 GTTTCTTTT
1 CTTTCTTTT
81108210 CTATTC-TTT
1 CT-TTCTTTT
81108219 CATTTCTTTT
1 C-TTTCTTTT
81108229 -TTTCTTTT
1 CTTTCTTTT
81108237 GTTTATTTAC
Statistics
Matches: 66, Mismatches: 11, Indels: 18
0.69 0.12 0.19
Matches are distributed among these distances:
8 13 0.20
9 31 0.47
10 16 0.24
12 3 0.05
13 3 0.05
ACGTcount: A:0.04, C:0.22, G:0.03, T:0.70
Consensus pattern (9 bp):
CTTTCTTTT
Found at i:81108165 original size:17 final size:17
Alignment explanation
Indices: 81108143--81108235 Score: 61
Period size: 17 Copynumber: 5.5 Consensus size: 17
81108133 CCTAATTTCC
81108143 CTTTCTTTCTTTCTTTT
1 CTTTCTTTCTTTCTTTT
*
81108160 CTTTCTTTCCTTCTTTT
1 CTTTCTTTCTTTCTTTT
* *
81108177 -TTCTCTGT-TTTCGTTT
1 CTT-TCTTTCTTTCTTTT
* *
81108193 C--ACATTCTGTTTCTTTT
1 CTTTC-TT-TCTTTCTTTT
81108210 CTATTCTTTCATTTCTTTT
1 CT-TTCTTTC-TTTCTTTT
81108229 -TTTCTTT
1 CTTTCTTT
81108236 TGTTTATTTA
Statistics
Matches: 58, Mismatches: 9, Indels: 18
0.68 0.11 0.21
Matches are distributed among these distances:
14 1 0.02
15 1 0.02
16 9 0.16
17 34 0.59
18 2 0.03
19 10 0.17
20 1 0.02
ACGTcount: A:0.04, C:0.23, G:0.03, T:0.70
Consensus pattern (17 bp):
CTTTCTTTCTTTCTTTT
Found at i:81108263 original size:5 final size:5
Alignment explanation
Indices: 81108255--81108288 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
81108245 ACTTTATTAT
81108255 TATAA TATAA TATAA TATAA TATAA TATAA TATA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATA
81108289 TATTACTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:81113923 original size:40 final size:40
Alignment explanation
Indices: 81113685--81113909 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
81113675 TTGAATGATG
* * * *
81113685 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
81113725 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGGGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
81113765 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
81113804 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
81113844 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
81113885 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
81113910 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 33 0.20
40 120 0.74
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:81113931 original size:119 final size:119
Alignment explanation
Indices: 81113685--81113942 Score: 283
Period size: 119 Copynumber: 2.2 Consensus size: 119
81113675 TTGAATGATG
* *
81113685 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* * **
81113750 GTGCGGGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * **
81113804 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
81113867 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
81113924 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
81113943 TACGTGATTT
Statistics
Matches: 117, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 83 0.71
120 31 0.26
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:81118551 original size:27 final size:27
Alignment explanation
Indices: 81118494--81118552 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 27
81118484 TAATCAAAAG
* *** *
81118494 TTATATCTTTTGGTTATTGATTTAGAG
1 TTATATCTTTTGATTATTGACAAAGAA
*
81118521 TTATATCTTTTGATTTTTGACAAAGAA
1 TTATATCTTTTGATTATTGACAAAGAA
81118548 TTATA
1 TTATA
81118553 ACAATTCAAG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.29, C:0.05, G:0.14, T:0.53
Consensus pattern (27 bp):
TTATATCTTTTGATTATTGACAAAGAA
Found at i:81121032 original size:3 final size:3
Alignment explanation
Indices: 81121024--81121068 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
81121014 TCTTTTCCCT
81121024 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
81121069 ACCTTATACT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:81123530 original size:39 final size:39
Alignment explanation
Indices: 81123487--81123588 Score: 123
Period size: 39 Copynumber: 2.6 Consensus size: 39
81123477 AACATGTTTT
* * *
81123487 TGAGTATTGTGATATATGTTTGAATGTTAAGCGATTATA
1 TGAGTATTGTAATATATGTTTAAATGTTAAGCGAATATA
* * * *
81123526 TGAGTATTGTTATATATGCTTAAATGTTATGTGAATATA
1 TGAGTATTGTAATATATGTTTAAATGTTAAGCGAATATA
* *
81123565 TGTGTAATGTAATATATGTTTAAA
1 TGAGTATTGTAATATATGTTTAAA
81123589 AGTGAATATG
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 53 1.00
ACGTcount: A:0.33, C:0.02, G:0.20, T:0.45
Consensus pattern (39 bp):
TGAGTATTGTAATATATGTTTAAATGTTAAGCGAATATA
Found at i:81123596 original size:18 final size:17
Alignment explanation
Indices: 81123556--81123597 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
81123546 TAAATGTTAT
*
81123556 GTGAATATATGTGTAAT
1 GTGAATATATGTGTAAA
*
81123573 GT-AATATATGTTTAAAA
1 GTGAATATATGTGT-AAA
81123590 GTGAATAT
1 GTGAATAT
81123598 GATTACCATG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 10 0.48
17 6 0.29
18 5 0.24
ACGTcount: A:0.40, C:0.00, G:0.19, T:0.40
Consensus pattern (17 bp):
GTGAATATATGTGTAAA
Found at i:81126287 original size:49 final size:49
Alignment explanation
Indices: 81126177--81126314 Score: 174
Period size: 49 Copynumber: 2.8 Consensus size: 49
81126167 ATGTGTGCTC
* *
81126177 GTATAAGACCTGTCTGGGACATGGCATCGGCAC-CGATAG-ATGGGAGCTA
1 GTATAAGACCTGTCTGGGACATGGCATCGAC-CTCGAT-GTATGGAAGCTA
* *
81126226 GTGTAAGCCCTGTCTGGGACATGGCATCGACCTCGATGTATGGAAG-TCA
1 GTATAAGACCTGTCTGGGACATGGCATCGACCTCGATGTATGGAAGCT-A
* *
81126275 GTATAAGACCTGTCTGGGACATGGCATCGACTTAGATGTA
1 GTATAAGACCTGTCTGGGACATGGCATCGACCTCGATGTA
81126315 AGAGCCAGTG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
48 3 0.04
49 75 0.96
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.24
Consensus pattern (49 bp):
GTATAAGACCTGTCTGGGACATGGCATCGACCTCGATGTATGGAAGCTA
Found at i:81136142 original size:13 final size:13
Alignment explanation
Indices: 81136124--81136150 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
81136114 ATACTTAAGT
81136124 ATATAATATAATA
1 ATATAATATAATA
81136137 ATATAATATAATA
1 ATATAATATAATA
81136150 A
1 A
81136151 AACATAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (13 bp):
ATATAATATAATA
Found at i:81145180 original size:46 final size:46
Alignment explanation
Indices: 81145127--81145254 Score: 220
Period size: 46 Copynumber: 2.8 Consensus size: 46
81145117 ATTTGGGCAT
*
81145127 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* *
81145173 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
*
81145219 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81145255 GCCGGTTACA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.27
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
Found at i:81157242 original size:41 final size:41
Alignment explanation
Indices: 81157191--81157276 Score: 120
Period size: 41 Copynumber: 2.1 Consensus size: 41
81157181 GTGTAAGAGT
* *
81157191 TGCAATAAATTTCACTTCGGAGAGTG-CAGAGTGAAGAGCGG
1 TGCAACAAATTTCACTTCGGAGAATGTC-GAGTGAAGAGCGG
**
81157232 TGCAACAAATTTCACTTCGGAGAATGTCGAGTGACTAGCGG
1 TGCAACAAATTTCACTTCGGAGAATGTCGAGTGAAGAGCGG
81157273 TGCA
1 TGCA
81157277 TGTTTTAGAT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
41 39 0.98
42 1 0.03
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.23
Consensus pattern (41 bp):
TGCAACAAATTTCACTTCGGAGAATGTCGAGTGAAGAGCGG
Found at i:81166921 original size:38 final size:38
Alignment explanation
Indices: 81166879--81166956 Score: 129
Period size: 38 Copynumber: 2.1 Consensus size: 38
81166869 GGATTCCAAA
*
81166879 ATCATTATTTTCTACACCACTGAAAAACGAACTGTTAC
1 ATCATTATTTTCGACACCACTGAAAAACGAACTGTTAC
* *
81166917 ATCATTATTTTCGACACCATTGAAAATCGAACTGTTAC
1 ATCATTATTTTCGACACCACTGAAAAACGAACTGTTAC
81166955 AT
1 AT
81166957 ACTTACTATA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.36, C:0.22, G:0.09, T:0.33
Consensus pattern (38 bp):
ATCATTATTTTCGACACCACTGAAAAACGAACTGTTAC
Found at i:81167090 original size:14 final size:13
Alignment explanation
Indices: 81167054--81167091 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
81167044 TCAAATTTAG
81167054 TAAA-ATAATATTT
1 TAAATATAAT-TTT
81167067 TAAATATAATTTT
1 TAAATATAATTTT
81167080 TAAATAGTAATT
1 TAAATA-TAATT
81167092 AAATAACCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 13 0.57
14 10 0.43
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (13 bp):
TAAATATAATTTT
Found at i:81168803 original size:24 final size:23
Alignment explanation
Indices: 81168725--81168805 Score: 76
Period size: 24 Copynumber: 3.4 Consensus size: 23
81168715 TGGTTCTTAT
*
81168725 TGAGCTTCCCGATA-GGCTCTTCG
1 TGAGCTTCCCGATATGGCTC-TCA
*
81168748 TGAGCTTCCCGATATGGTTCT-A
1 TGAGCTTCCCGATATGGCTCTCA
* *
81168770 TGTAAACTTCCCGGTTATGGCTCTCA
1 TG--AGCTTCCC-GATATGGCTCTCA
81168796 TGAGCTTCCC
1 TGAGCTTCCC
81168806 ATTATATAGT
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
22 2 0.04
23 15 0.32
24 18 0.38
25 9 0.19
26 3 0.06
ACGTcount: A:0.16, C:0.28, G:0.22, T:0.33
Consensus pattern (23 bp):
TGAGCTTCCCGATATGGCTCTCA
Found at i:81168848 original size:48 final size:48
Alignment explanation
Indices: 81168727--81168854 Score: 129
Period size: 48 Copynumber: 2.7 Consensus size: 48
81168717 GTTCTTATTG
* *
81168727 AGCTTCCCGATAGGCTCTTCGTGAGCTTCCC-GATATGGTTCTATGTA
1 AGCTTCCCGATAGGCTCTTCGTGAGCTTCCCAGATATAGTTCCATGTA
* * * *
81168774 AACTTCCCGGTTATGGCTC-TCATGAGCTTCCCATTATATAG-TCCA-GATA
1 AGCTTCCC-GATA-GGCTCTTCGTGAGCTTCCCA-GATATAGTTCCATG-TA
*
81168823 AGCTTCCCGATAGGCTCTTTGTGAGCTTCCCA
1 AGCTTCCCGATAGGCTCTTCGTGAGCTTCCCA
81168855 AAATGGCTCT
Statistics
Matches: 65, Mismatches: 10, Indels: 11
0.76 0.12 0.13
Matches are distributed among these distances:
47 12 0.18
48 31 0.48
49 17 0.26
50 5 0.08
ACGTcount: A:0.20, C:0.27, G:0.20, T:0.33
Consensus pattern (48 bp):
AGCTTCCCGATAGGCTCTTCGTGAGCTTCCCAGATATAGTTCCATGTA
Found at i:81168853 original size:23 final size:24
Alignment explanation
Indices: 81168823--81168878 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 24
81168813 AGTCCAGATA
* *
81168823 AGCTTCCCGATA-GGCTCTTTGTG
1 AGCTTCCCGAAATGGCTCTATGTG
*
81168846 AGCTTCCCAAAATGGCTCTATGTG
1 AGCTTCCCGAAATGGCTCTATGTG
81168870 AGCTTCCCG
1 AGCTTCCCG
81168879 TTACAAGGCT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 10 0.36
24 18 0.64
ACGTcount: A:0.18, C:0.29, G:0.23, T:0.30
Consensus pattern (24 bp):
AGCTTCCCGAAATGGCTCTATGTG
Found at i:81169749 original size:42 final size:42
Alignment explanation
Indices: 81169698--81169787 Score: 153
Period size: 42 Copynumber: 2.1 Consensus size: 42
81169688 CACGGGTAGA
* * *
81169698 CACACGAGCGTGTGTCTTGACCGTGTGTGACACACGGCTTGG
1 CACATGAGCGTGTGTCTTGACCGTGTATGACACACGGCCTGG
81169740 CACATGAGCGTGTGTCTTGACCGTGTATGACACACGGCCTGG
1 CACATGAGCGTGTGTCTTGACCGTGTATGACACACGGCCTGG
81169782 CACATG
1 CACATG
81169788 GGCATGTGGT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (42 bp):
CACATGAGCGTGTGTCTTGACCGTGTATGACACACGGCCTGG
Found at i:81170541 original size:24 final size:24
Alignment explanation
Indices: 81170500--81170548 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
81170490 AGACACACCA
*
81170500 TAGCTCAAAAGAGCATCCCGTTAT
1 TAGCTCAAAAGAGCATCCCGATAT
* * *
81170524 TAGCTCTAATGAGTATCCCGATAT
1 TAGCTCAAAAGAGCATCCCGATAT
81170548 T
1 T
81170549 TGGCTCTTAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (24 bp):
TAGCTCAAAAGAGCATCCCGATAT
Found at i:81170567 original size:25 final size:25
Alignment explanation
Indices: 81170526--81170677 Score: 98
Period size: 25 Copynumber: 6.1 Consensus size: 25
81170516 CCCGTTATTA
*
81170526 GCTCTAATGAG-TATCCCGATATTTG
1 GCTCTTATGAGCT-TCCCGATATTTG
*
81170551 GCTCTTATGAGCTTCCC-ATTATATG
1 GCTCTTATGAGCTTCCCGA-TATTTG
** * *
81170576 TTTCTTACGAGCTTCCCGATAATTG
1 GCTCTTATGAGCTTCCCGATATTTG
* *** *
81170601 ACTCTTATGAGCTTTATGAT-TTGTA
1 GCTCTTATGAGCTTCCCGATATT-TG
*
81170626 GCTCTCTA-GAGCTTCCCAATA-TTG
1 GCTCT-TATGAGCTTCCCGATATTTG
* * *
81170650 GCTCGTATGAGCTTCCCGTTATATG
1 GCTCTTATGAGCTTCCCGATATTTG
81170675 GCT
1 GCT
81170678 TGAAAGAGCT
Statistics
Matches: 94, Mismatches: 25, Indels: 16
0.70 0.19 0.12
Matches are distributed among these distances:
23 2 0.02
24 18 0.19
25 70 0.74
26 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.18, T:0.39
Consensus pattern (25 bp):
GCTCTTATGAGCTTCCCGATATTTG
Found at i:81173558 original size:13 final size:13
Alignment explanation
Indices: 81173522--81173559 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
81173512 CCCACCCACC
81173522 AGAAGAGAGAAAG
1 AGAAGAGAGAAAG
*
81173535 AAAAGAGAGAAAGG
1 AGAAGAGAGAAA-G
81173549 AGAAGA-AGAAA
1 AGAAGAGAGAAA
81173560 AAAAAAAGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 16 0.73
14 6 0.27
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (13 bp):
AGAAGAGAGAAAG
Found at i:81173795 original size:60 final size:60
Alignment explanation
Indices: 81173729--81173847 Score: 204
Period size: 60 Copynumber: 2.0 Consensus size: 60
81173719 TGTTTTTTTA
* *
81173729 TAATTATTTTAAAATTAATTTGTTAGTAATTTAGGATTATGTTATAAATTT-TTGTGTTTG
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTAT-AATTTGTTGTGTTTG
81173789 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAATTTGTTGTGTTT
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAATTTGTTGTGTTT
81173848 AGTTTAGTAT
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
59 5 0.09
60 51 0.91
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.55
Consensus pattern (60 bp):
TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAATTTGTTGTGTTTG
Found at i:81176611 original size:79 final size:79
Alignment explanation
Indices: 81176464--81176607 Score: 215
Period size: 79 Copynumber: 1.9 Consensus size: 79
81176454 AATAACTTCA
* * * *
81176464 TATTTATGTAATGATTTTTTTGGCATTTTATTTATTAATTTTATTTGTCTTTTTTTAACAACTTA
1 TATTTATGTAATGACTTTTTTGCCATTTTATTTATCAATTTTATTGGTCTTTTTTTAACAACTTA
81176529 AATAGTCAACTTTG
66 AATAGTCAACTTTG
*
81176543 TATTTATGTAATGACTTTTTTGCCATTTTATTTATCAA-TTTA-TGGT-TTTTTTT-ACAATTTA
1 TATTTATGTAATGACTTTTTTGCCATTTTATTTATCAATTTTATTGGTCTTTTTTTAACAACTTA
81176604 AATA
66 AATA
81176608 AATAAACTTT
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
75 11 0.18
76 7 0.12
77 3 0.05
78 4 0.07
79 35 0.58
ACGTcount: A:0.27, C:0.08, G:0.08, T:0.57
Consensus pattern (79 bp):
TATTTATGTAATGACTTTTTTGCCATTTTATTTATCAATTTTATTGGTCTTTTTTTAACAACTTA
AATAGTCAACTTTG
Found at i:81176632 original size:79 final size:79
Alignment explanation
Indices: 81176457--81176620 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
81176447 TAATATAAAT
* * * * * *
81176457 AACTTCATATTTATGTAATGATTTTTTTGGCATTTTATTTATTAATTTTATTTGTCTTTTTTTAA
1 AACTTTATATCTATGTAATGACTTTTTTGCCATTTTATTTATCAATTTTATTGGTCTTTTTTTAA
* *
81176522 CAACTTAAATAGTC
66 CAACTTAAATAATA
* *
81176536 AACTTTGTATTTATGTAATGACTTTTTTGCCATTTTATTTATCAA-TTTA-TGGT-TTTTTTT-A
1 AACTTTATATCTATGTAATGACTTTTTTGCCATTTTATTTATCAATTTTATTGGTCTTTTTTTAA
*
81176597 CAATTTAAATAAATA
66 CAACTTAAAT-AATA
81176612 AACTTTATA
1 AACTTTATA
81176621 CTAACTATGT
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
75 10 0.14
76 17 0.23
77 3 0.04
78 4 0.05
79 40 0.54
ACGTcount: A:0.30, C:0.09, G:0.07, T:0.54
Consensus pattern (79 bp):
AACTTTATATCTATGTAATGACTTTTTTGCCATTTTATTTATCAATTTTATTGGTCTTTTTTTAA
CAACTTAAATAATA
Found at i:81178966 original size:24 final size:24
Alignment explanation
Indices: 81178934--81178981 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
81178924 ACTTCCGTTT
*
81178934 TGCTAAATTTTGTGTTTGTTGCTC
1 TGCTAAATTTTGTGTCTGTTGCTC
81178958 TGCTAAATTTTGTGTCTGTTGCTC
1 TGCTAAATTTTGTGTCTGTTGCTC
81178982 ATTTGATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.12, C:0.15, G:0.21, T:0.52
Consensus pattern (24 bp):
TGCTAAATTTTGTGTCTGTTGCTC
Found at i:81180056 original size:26 final size:27
Alignment explanation
Indices: 81180015--81180066 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
81180005 AATAATTTTT
81180015 AAATTTAATTATAAC-A-AAAATATAA
1 AAATTTAATTATAACAATAAAATATAA
81180040 AAATATTAA-TATAAACAATAAAATATA
1 AAAT-TTAATTAT-AACAATAAAATATA
81180067 TTTTTAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
25 7 0.30
26 7 0.30
27 1 0.04
28 8 0.35
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (27 bp):
AAATTTAATTATAACAATAAAATATAA
Found at i:81180097 original size:18 final size:19
Alignment explanation
Indices: 81180051--81180097 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
81180041 AATATTAATA
81180051 TAAACAATAAAATATATTT
1 TAAACAATAAAATATATTT
* ** *
81180070 TTAATTATAAGAT-TATTT
1 TAAACAATAAAATATATTT
81180088 TAAACAATAA
1 TAAACAATAA
81180098 TCAACAGTCA
Statistics
Matches: 21, Mismatches: 7, Indels: 1
0.72 0.24 0.03
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.40
Consensus pattern (19 bp):
TAAACAATAAAATATATTT
Found at i:81181549 original size:31 final size:32
Alignment explanation
Indices: 81181511--81181590 Score: 110
Period size: 31 Copynumber: 2.5 Consensus size: 32
81181501 TAAATCTTTC
81181511 AAAGTGCTCAAATAATGA-CCAAAACTTTTT-G
1 AAAGTGCTCAAATAA-GAGCCAAAACTTTTTGG
* * *
81181542 AAAGTGCTCATATGAGAGCCAAACCTTTTTGG
1 AAAGTGCTCAAATAAGAGCCAAAACTTTTTGG
81181574 AAAGTGCTCAAATAAGA
1 AAAGTGCTCAAATAAGA
81181591 ACTTTTCAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
30 2 0.05
31 24 0.57
32 16 0.38
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.26
Consensus pattern (32 bp):
AAAGTGCTCAAATAAGAGCCAAAACTTTTTGG
Found at i:81182561 original size:13 final size:13
Alignment explanation
Indices: 81182543--81182567 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81182533 AAAAAAAAAG
81182543 TTATATAAATTTT
1 TTATATAAATTTT
81182556 TTATATAAATTT
1 TTATATAAATTT
81182568 AATTAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TTATATAAATTTT
Found at i:81182683 original size:13 final size:12
Alignment explanation
Indices: 81182638--81182675 Score: 53
Period size: 11 Copynumber: 3.3 Consensus size: 12
81182628 CCATTTCAAT
81182638 TAAAATTTTATA
1 TAAAATTTTATA
*
81182650 T-AATTTTTATA
1 TAAAATTTTATA
81182661 TAAAATTTTA-A
1 TAAAATTTTATA
81182672 TAAA
1 TAAA
81182676 TATATTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
11 15 0.65
12 8 0.35
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
TAAAATTTTATA
Found at i:81191506 original size:29 final size:29
Alignment explanation
Indices: 81191469--81191543 Score: 141
Period size: 29 Copynumber: 2.6 Consensus size: 29
81191459 TTTGTTTCAA
*
81191469 GTTATATTTTAGTCACTCATGTTTGAAAT
1 GTTACATTTTAGTCACTCATGTTTGAAAT
81191498 GTTACATTTTAGTCACTCATGTTTGAAAT
1 GTTACATTTTAGTCACTCATGTTTGAAAT
81191527 GTTACATTTTAGTCACT
1 GTTACATTTTAGTCACT
81191544 AAGTATTAAT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.27, C:0.13, G:0.13, T:0.47
Consensus pattern (29 bp):
GTTACATTTTAGTCACTCATGTTTGAAAT
Found at i:81196428 original size:9 final size:9
Alignment explanation
Indices: 81196400--81196452 Score: 52
Period size: 9 Copynumber: 5.4 Consensus size: 9
81196390 ATAAACATGG
81196400 TATGTATGA
1 TATGTATGA
*
81196409 TATGCACATGA
1 TATG--TATGA
*
81196420 CATGTATGA
1 TATGTATGA
81196429 TATGTACATGA
1 TATGT--ATGA
81196440 TATGTATGA
1 TATGTATGA
81196449 TATG
1 TATG
81196453 CACATGATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
9 20 0.56
11 16 0.44
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.38
Consensus pattern (9 bp):
TATGTATGA
Found at i:81196441 original size:11 final size:11
Alignment explanation
Indices: 81196405--81196460 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
81196395 CATGGTATGT
*
81196405 ATGATATGCAC
1 ATGATATGTAC
*
81196416 ATGACATGT--
1 ATGATATGTAC
81196425 ATGATATGTAC
1 ATGATATGTAC
81196436 ATGATATGT--
1 ATGATATGTAC
*
81196445 ATGATATGCAC
1 ATGATATGTAC
81196456 ATGAT
1 ATGAT
81196461 GTATTCATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.34
Consensus pattern (11 bp):
ATGATATGTAC
Found at i:81196460 original size:20 final size:20
Alignment explanation
Indices: 81196394--81196460 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
81196384 ATTTTGATAA
*
81196394 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
81196414 ACATGACATGTATGATATGT
1 ACATGATATGTATGATATGC
81196434 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
81196454 ACATGAT
1 ACATGAT
81196461 GTATTCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:81196536 original size:24 final size:24
Alignment explanation
Indices: 81196509--81196653 Score: 186
Period size: 24 Copynumber: 6.0 Consensus size: 24
81196499 GGAGGAAGTG
81196509 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
81196533 CAAAAGGGCTTATGCCCCAGTTA-
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
81196556 CTAAAATGGCTTATGCCCCCGTTAT
1 C-AAAAGGGCTTATGCCCCAGTTAT
*
81196581 TAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
81196605 TAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
81196629 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
81196654 TTGATAAAGC
Statistics
Matches: 109, Mismatches: 8, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
23 1 0.01
24 97 0.89
25 11 0.10
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:81196586 original size:48 final size:48
Alignment explanation
Indices: 81196510--81196652 Score: 207
Period size: 48 Copynumber: 3.0 Consensus size: 48
81196500 GAGGAAGTGC
*
81196510 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTACT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTACT
* * *
81196558 AAAATGGCTTATGCCCCCGTTATTAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTACT
* *
81196606 AAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTA
1 AAAAGGGCTTATGCCCCAGTTATTAAAAG-GGCTTATGCC-CCAGTTA
81196653 TTTGATAAAG
Statistics
Matches: 85, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
48 75 0.88
49 10 0.12
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTACT
Found at i:81200688 original size:18 final size:19
Alignment explanation
Indices: 81200658--81200721 Score: 87
Period size: 18 Copynumber: 3.4 Consensus size: 19
81200648 AAATTAAATG
81200658 AAATGAGAAAAAATAAATTT
1 AAATGA-AAAAAATAAATTT
*
81200678 AAAT-AAAAAAATAAATTG
1 AAATGAAAAAAATAAATTT
*
81200696 AAATGAGAAAAA-AAATTT
1 AAATGAAAAAAATAAATTT
81200714 AAATGAAA
1 AAATGAAA
81200722 TGAAACGTGA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
18 28 0.72
19 7 0.18
20 4 0.10
ACGTcount: A:0.69, C:0.00, G:0.09, T:0.22
Consensus pattern (19 bp):
AAATGAAAAAAATAAATTT
Found at i:81200720 original size:23 final size:22
Alignment explanation
Indices: 81200652--81200724 Score: 63
Period size: 18 Copynumber: 3.6 Consensus size: 22
81200642 ACACGCAAAT
81200652 TAAA-TGAAATGAG--AAAAAA
1 TAAATTGAAATGAGAAAAAAAA
*
81200671 TAAATTTAAAT----AAAAAAA
1 TAAATTGAAATGAGAAAAAAAA
81200689 TAAATTGAAATGAGAAAAAAAA
1 TAAATTGAAATGAGAAAAAAAA
81200711 TTTAAA-TGAAATGA
1 --TAAATTGAAATGA
81200725 AACGTGAAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
18 16 0.36
19 4 0.09
20 5 0.11
22 7 0.16
23 8 0.18
24 4 0.09
ACGTcount: A:0.66, C:0.00, G:0.11, T:0.23
Consensus pattern (22 bp):
TAAATTGAAATGAGAAAAAAAA
Found at i:81200738 original size:7 final size:7
Alignment explanation
Indices: 81200722--81200756 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
81200712 TTAAATGAAA
*
81200722 TGAAACG
1 TGAAATG
81200729 TGAAATG
1 TGAAATG
81200736 TGAAATG
1 TGAAATG
81200743 TGAAATG
1 TGAAATG
81200750 TGAAATG
1 TGAAATG
81200757 AAAATGAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.43, C:0.03, G:0.29, T:0.26
Consensus pattern (7 bp):
TGAAATG
Found at i:81200991 original size:25 final size:24
Alignment explanation
Indices: 81200958--81201011 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 24
81200948 TTGATTTGAA
* * *
81200958 AAAAATTTGAATTTAAATGAAATTT
1 AAAATTTTGAAATAAAATGAAA-TT
81200983 AAAATTTTGAAATAAAATGAAATT
1 AAAATTTTGAAATAAAATGAAATT
81201007 AAAAT
1 AAAAT
81201012 ATAAATTGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 7 0.27
25 19 0.73
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.35
Consensus pattern (24 bp):
AAAATTTTGAAATAAAATGAAATT
Found at i:81201015 original size:18 final size:19
Alignment explanation
Indices: 81200992--81201084 Score: 95
Period size: 19 Copynumber: 4.9 Consensus size: 19
81200982 TAAAATTTTG
* *
81200992 AAATAAAATGAAAT-TAAA
1 AAATAAATTGAAATGAAAA
*
81201010 ATATAAATTGAAATGAAAA
1 AAATAAATTGAAATGAAAA
*
81201029 AAATAAATTGAAATG-AGA
1 AAATAAATTGAAATGAAAA
81201047 AAA-AAA-TGAATATGGAAAA
1 AAATAAATTGAA-AT-GAAAA
81201066 AGAATAAATTGAAATGAAA
1 A-AATAAATTGAAATGAAA
81201085 TGAAATTTGA
Statistics
Matches: 62, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
16 4 0.06
17 5 0.08
18 18 0.29
19 20 0.32
20 6 0.10
21 5 0.08
22 4 0.06
ACGTcount: A:0.66, C:0.00, G:0.13, T:0.22
Consensus pattern (19 bp):
AAATAAATTGAAATGAAAA
Found at i:81201085 original size:5 final size:5
Alignment explanation
Indices: 81201075--81201181 Score: 79
Period size: 5 Copynumber: 19.6 Consensus size: 5
81201065 AAGAATAAAT
*
81201075 TGAAA TGAAA TGAAA TTTGAAA TGAATA TGAAA TGAAA TGTAATT TGAAA
1 TGAAA TGAAA TGAAA --TGAAA TGAA-A TGAAA TGAAA TG-AA-A TGAAA
* * * **
81201125 TGAATC TAAAA TGAAA TGAAA GTTGAAA TAAATA TGAAA TGAAA AAAAA
1 TGAA-A TGAAA TGAAA TGAAA --TGAAA TGAA-A TGAAA TGAAA TGAAA
81201174 TGAAA TGA
1 TGAAA TGA
81201182 GACAAAAAAT
Statistics
Matches: 81, Mismatches: 12, Indels: 18
0.73 0.11 0.16
Matches are distributed among these distances:
5 53 0.65
6 16 0.20
7 12 0.15
ACGTcount: A:0.56, C:0.01, G:0.17, T:0.26
Consensus pattern (5 bp):
TGAAA
Found at i:81201096 original size:17 final size:18
Alignment explanation
Indices: 81201074--81201164 Score: 73
Period size: 17 Copynumber: 5.0 Consensus size: 18
81201064 AAAGAATAAA
81201074 TTGAAATGAA-ATGAAAT
1 TTGAAATGAATATGAAAT
81201091 TTGAAATGAATATGAAA-
1 TTGAAATGAATATGAAAT
*
81201108 -TGAAATGTAATTTGAAAT
1 TTGAAATG-AATATGAAAT
* *
81201126 GAATCTAAAATGAA-ATGAAAG
1 ---T-TGAAATGAATATGAAAT
*
81201147 TTGAAATAAATATGAAAT
1 TTGAAATGAATATGAAAT
81201165 GAAAAAAAAT
Statistics
Matches: 58, Mismatches: 7, Indels: 17
0.71 0.09 0.21
Matches are distributed among these distances:
16 7 0.12
17 25 0.43
18 13 0.22
21 5 0.09
22 2 0.03
23 6 0.10
ACGTcount: A:0.53, C:0.01, G:0.16, T:0.30
Consensus pattern (18 bp):
TTGAAATGAATATGAAAT
Found at i:81201097 original size:12 final size:12
Alignment explanation
Indices: 81201079--81201168 Score: 61
Period size: 11 Copynumber: 7.9 Consensus size: 12
81201069 ATAAATTGAA
81201079 ATGAAATGAAAT
1 ATGAAATGAAAT
*
81201091 TTGAAATG-AAT
1 ATGAAATGAAAT
81201102 ATGAAATGAAAT
1 ATGAAATGAAAT
* *
81201114 GT-AATTTG-AA-
1 ATGAA-ATGAAAT
*
81201124 ATG-AATCTAAA-
1 ATGAAAT-GAAAT
81201135 ATGAAATGAAAGT
1 ATGAAATGAAA-T
81201148 -TGAAAT-AAAT
1 ATGAAATGAAAT
81201158 ATGAAATGAAA
1 ATGAAATGAAA
81201169 AAAAATGAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 20
0.68 0.09 0.23
Matches are distributed among these distances:
9 1 0.02
10 3 0.05
11 31 0.52
12 25 0.42
ACGTcount: A:0.54, C:0.01, G:0.17, T:0.28
Consensus pattern (12 bp):
ATGAAATGAAAT
Found at i:81201109 original size:28 final size:28
Alignment explanation
Indices: 81201075--81201168 Score: 143
Period size: 28 Copynumber: 3.4 Consensus size: 28
81201065 AAGAATAAAT
81201075 TGAAATGAAATGAAATTTGAAATGAATA
1 TGAAATGAAATGAAATTTGAAATGAATA
* *
81201103 TGAAATGAAATGTAATTTGAAATGAATC
1 TGAAATGAAATGAAATTTGAAATGAATA
* * *
81201131 TAAAATGAAATGAAAGTTGAAATAAATA
1 TGAAATGAAATGAAATTTGAAATGAATA
81201159 TGAAATGAAA
1 TGAAATGAAA
81201169 AAAAATGAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 58 1.00
ACGTcount: A:0.54, C:0.01, G:0.17, T:0.28
Consensus pattern (28 bp):
TGAAATGAAATGAAATTTGAAATGAATA
Found at i:81201188 original size:17 final size:15
Alignment explanation
Indices: 81200990--81201212 Score: 63
Period size: 17 Copynumber: 13.1 Consensus size: 15
81200980 TTTAAAATTT
*
81200990 TGAAATAAAATGAAA
1 TGAAAAAAAATGAAA
*
81201005 TTAAAATATAAATTGAAA
1 TGAAAA-A-AAA-TGAAA
81201023 TGAAAAAAATAAATTGAAA
1 TG--AAAAA-AAA-TGAAA
81201042 TGAGAAAAAAATGAATA
1 TGA-AAAAAAATGAA-A
*
81201059 TGGAAAAAGAAT-AAA
1 T-GAAAAAAAATGAAA
**
81201074 TTGAAATGAAATGAAA
1 -TGAAAAAAAATGAAA
* *
81201090 TTTGAAATGAATATGAAA
1 --TGAAA-AAAAATGAAA
* **
81201108 TGAAATGTAATTTGAAA
1 TGAAA--AAAAATGAAA
81201125 TGAATCTAAAATGAAATGAAA
1 TG-A---AAAA--AAATGAAA
*
81201146 GTTGAAATAAATATGAAA
1 --TGAAA-AAAAATGAAA
81201164 TGAAAAAAAATGAAA
1 TGAAAAAAAATGAAA
*
81201179 TGAGACAAAAAATTAAAA
1 TGA-A-AAAAAA-TGAAA
81201197 TGATAAAAAAAT-AAA
1 TGA-AAAAAAATGAAA
81201212 T
1 T
81201213 TTAAATGAAA
Statistics
Matches: 163, Mismatches: 20, Indels: 50
0.70 0.09 0.21
Matches are distributed among these distances:
15 28 0.17
16 23 0.14
17 44 0.27
18 35 0.21
19 16 0.10
20 6 0.04
21 8 0.05
22 1 0.01
23 2 0.01
ACGTcount: A:0.61, C:0.01, G:0.14, T:0.24
Consensus pattern (15 bp):
TGAAAAAAAATGAAA
Found at i:81201198 original size:56 final size:55
Alignment explanation
Indices: 81201077--81201199 Score: 124
Period size: 56 Copynumber: 2.2 Consensus size: 55
81201067 GAATAAATTG
* * * * ** *
81201077 AAATGAAATGAAATTTGAAATGAATATGAAATGAAATGTAATTTGAAATGAATCTA
1 AAATAAAATGAAAGTTGAAATAAATATGAAATGAAA-GAAAAATGAAATGAATCAA
*
81201133 AAATGAAATGAAAGTTGAAATAAATATGAAATGAAA-AAAAATGAAATGAGA-CAAA
1 AAATAAAATGAAAGTTGAAATAAATATGAAATGAAAGAAAAATGAAATGA-ATC-AA
81201188 AAATTAAAATGA
1 AAA-TAAAATGA
81201200 TAAAAAAATA
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
54 11 0.19
55 5 0.09
56 41 0.72
ACGTcount: A:0.59, C:0.02, G:0.15, T:0.24
Consensus pattern (55 bp):
AAATAAAATGAAAGTTGAAATAAATATGAAATGAAAGAAAAATGAAATGAATCAA
Found at i:81201218 original size:21 final size:22
Alignment explanation
Indices: 81201188--81201231 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
81201178 ATGAGACAAA
81201188 AAATTAAAATG-ATAAAAAAAT
1 AAATTAAAATGAATAAAAAAAT
*
81201209 AAATTTAAATGAAATAAAAAAAT
1 AAATTAAAATG-AATAAAAAAAT
81201232 TGACAAGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 10 0.50
23 10 0.50
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (22 bp):
AAATTAAAATGAATAAAAAAAT
Done.