Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 244 of 322
Found at i:81201798 original size:5 final size:5
Alignment explanation
Indices: 81201783--81201840 Score: 71
Period size: 5 Copynumber: 10.8 Consensus size: 5
81201773 TTTATTTCAA
*
81201783 ATTTC ATTTTC ATTTC ACTTC ATCTTC ATTTTC ATTTTC ATTTC ATTTC
1 ATTTC A-TTTC ATTTC ATTTC AT-TTC A-TTTC A-TTTC ATTTC ATTTC
81201832 ATTTC ATTT
1 ATTTC ATTT
81201841 TTGTTTCACA
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
5 28 0.58
6 19 0.40
7 1 0.02
ACGTcount: A:0.19, C:0.21, G:0.00, T:0.60
Consensus pattern (5 bp):
ATTTC
Found at i:81201819 original size:28 final size:27
Alignment explanation
Indices: 81201784--81201841 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 27
81201774 TTATTTCAAA
81201784 TTTCATTTTCATTTCACTTCATCTTCAT
1 TTTCATTTTCATTTCACTTCAT-TTCAT
*
81201812 TTTCATTTTCATTTCATTTCATTTCAT
1 TTTCATTTTCATTTCACTTCATTTCAT
81201839 TTT
1 TTT
81201842 TGTTTCACAT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 8 0.28
28 21 0.72
ACGTcount: A:0.17, C:0.21, G:0.00, T:0.62
Consensus pattern (27 bp):
TTTCATTTTCATTTCACTTCATTTCAT
Found at i:81201842 original size:22 final size:21
Alignment explanation
Indices: 81201783--81201840 Score: 82
Period size: 22 Copynumber: 2.7 Consensus size: 21
81201773 TTTATTTCAA
*
81201783 ATTTCATTTTCATTTCACTTC
1 ATTTCATTTTCATTTCATTTC
81201804 ATCTTCATTTTCATTTTCATTTC
1 AT-TTCATTTTCA-TTTCATTTC
81201827 ATTTCA-TTTCATTT
1 ATTTCATTTTCATTT
81201841 TTGTTTCACA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
20 3 0.09
21 7 0.21
22 14 0.41
23 10 0.29
ACGTcount: A:0.19, C:0.21, G:0.00, T:0.60
Consensus pattern (21 bp):
ATTTCATTTTCATTTCATTTC
Found at i:81201842 original size:28 final size:28
Alignment explanation
Indices: 81201784--81201870 Score: 97
Period size: 28 Copynumber: 3.1 Consensus size: 28
81201774 TTATTTCAAA
*
81201784 TTTCATTTTCATTTCACTTCATCTTCA-T
1 TTTCATTTTCATTTCATTTCAT-TTCATT
81201812 TTTCATTTTCATTTCATTTCATTTCATT
1 TTTCATTTTCATTTCATTTCATTTCATT
* * * *
81201840 TTT-GTTTCACATTTTATTTCATTTAATT
1 TTTCATTT-TCATTTCATTTCATTTCATT
81201868 TTT
1 TTT
81201871 TTCCATAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
27 7 0.13
28 45 0.87
ACGTcount: A:0.18, C:0.17, G:0.01, T:0.63
Consensus pattern (28 bp):
TTTCATTTTCATTTCATTTCATTTCATT
Found at i:81201902 original size:19 final size:19
Alignment explanation
Indices: 81201860--81201951 Score: 62
Period size: 20 Copynumber: 4.5 Consensus size: 19
81201850 ATTTTATTTC
**
81201860 ATTTAATTTTTTTCCATAAAA
1 ATTT-ATTTTTTT-CATATTA
81201881 ATTTATTTTTTTCATATTA
1 ATTTATTTTTTTCATATTA
* *
81201900 ATTTTTTGTCTTATTTCA-ATTT
1 A-TTTAT-T-TT-TTTCATATTA
81201922 ATTTATTTTTTTCAT-TTCA
1 ATTTATTTTTTTCATATT-A
81201941 ATTTATATTTT
1 ATTTAT-TTTT
81201952 ATTTTCATTT
Statistics
Matches: 58, Mismatches: 6, Indels: 15
0.73 0.08 0.19
Matches are distributed among these distances:
18 7 0.12
19 14 0.24
20 17 0.29
21 9 0.16
22 6 0.10
23 5 0.09
ACGTcount: A:0.26, C:0.08, G:0.01, T:0.65
Consensus pattern (19 bp):
ATTTATTTTTTTCATATTA
Found at i:81201929 original size:26 final size:23
Alignment explanation
Indices: 81201895--81201963 Score: 77
Period size: 23 Copynumber: 2.9 Consensus size: 23
81201885 ATTTTTTTCA
81201895 TATTAATTTTTTGTCTTATTTCAATT
1 TATTAATTTTTT-TC--ATTTCAATT
*
81201921 TATTTATTTTTTTCATTTCAATT
1 TATTAATTTTTTTCATTTCAATT
*
81201944 TA-TATTTTATTTTCATTTCA
1 TATTAATTT-TTTTCATTTCA
81201964 TATTCATTTC
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
22 4 0.10
23 22 0.56
25 2 0.05
26 11 0.28
ACGTcount: A:0.23, C:0.09, G:0.01, T:0.67
Consensus pattern (23 bp):
TATTAATTTTTTTCATTTCAATT
Found at i:81201938 original size:23 final size:22
Alignment explanation
Indices: 81201912--81201986 Score: 78
Period size: 23 Copynumber: 3.3 Consensus size: 22
81201902 TTTTTGTCTT
*
81201912 ATTTCAATTTATTTATTTTTTTC
1 ATTTCAATTTATTT-TTATTTTC
81201935 ATTTCAATTTATATTTTATTTTC
1 ATTTCAATTTAT-TTTTATTTTC
* ** *
81201958 ATTTCATATTCATTTCAACTTTC
1 ATTTCA-ATTTATTTTTATTTTC
81201981 ATTTCA
1 ATTTCA
81201987 TAGATGCTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
23 38 0.84
24 7 0.16
ACGTcount: A:0.25, C:0.13, G:0.00, T:0.61
Consensus pattern (22 bp):
ATTTCAATTTATTTTTATTTTC
Found at i:81201983 original size:12 final size:11
Alignment explanation
Indices: 81201931--81201986 Score: 51
Period size: 12 Copynumber: 4.9 Consensus size: 11
81201921 TATTTATTTT
81201931 TTTCATTTCAA
1 TTTCATTTCAA
* * *
81201942 TTTATATTTTAT
1 TTT-CATTTCAA
81201954 TTTCATTTC-A
1 TTTCATTTCAA
81201964 TATTCATTTCAA
1 T-TTCATTTCAA
81201976 CTTTCATTTCA
1 -TTTCATTTCA
81201987 TAGATGCTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
10 1 0.03
11 15 0.43
12 18 0.51
13 1 0.03
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (11 bp):
TTTCATTTCAA
Found at i:81204569 original size:46 final size:46
Alignment explanation
Indices: 81204421--81204637 Score: 253
Period size: 46 Copynumber: 4.7 Consensus size: 46
81204411 TTTGTCTGCT
* *
81204421 AGTGTAAGACATGTCTGGGACATGCATCGG-C-C-ACATTATGAGACAC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATT-TAAG-C-C
* * ** * *
81204467 AGTGTAAGACCATGTCTGGGACATGACATCGGCATTGAGA-CGAGAACT
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGGCCTCGAGATTTA-AGCC
* *
81204515 AGTATAAGACATATCTGGGACATGCATCGGCCTCGAGATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATTTAAGCC
*
81204561 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATTTAAGCC
81204607 AGTGTAAGACATGTCTGGGACATGCATCGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC
81204638 TACAAGATGT
Statistics
Matches: 145, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
46 97 0.67
47 30 0.21
48 14 0.10
49 1 0.01
50 1 0.01
51 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATTTAAGCC
Found at i:81204707 original size:47 final size:49
Alignment explanation
Indices: 81204653--81204773 Score: 133
Period size: 50 Copynumber: 2.5 Consensus size: 49
81204643 GATGTGGTAG
* * *
81204653 TGTAAGACTATGTCTGGACATGGCTTCAACAC-G-TAT-TGAG-GTGTCAA
1 TGTAAGACCATGTCTGGACATGGCATCAACACGGATATGTGAGAG-CT-AA
* *
81204700 TGTAAGACCATGTCTGGGACATTGCATCGACACGGATATGTGAGAGCTAA
1 TGTAAGACCATGTCT-GGACATGGCATCAACACGGATATGTGAGAGCTAA
81204750 TGTAAGACCATGTCTGAGACATGG
1 TGTAAGACCATGTCTG-GACATGG
81204774 TGTCGGCCTC
Statistics
Matches: 62, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
47 14 0.23
48 14 0.23
49 2 0.03
50 26 0.42
51 5 0.08
52 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.26
Consensus pattern (49 bp):
TGTAAGACCATGTCTGGACATGGCATCAACACGGATATGTGAGAGCTAA
Found at i:81204859 original size:47 final size:47
Alignment explanation
Indices: 81204421--81204874 Score: 233
Period size: 46 Copynumber: 9.7 Consensus size: 47
81204411 TTTGTCTGCT
* * *
81204421 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-C-ACATTATGAGACAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTCGATA-GATGAG-C-C
* * * * * *
81204467 AGTGTAAGACCATGTCTGGGACATGACATCGGCATTGAGACGA-GAACT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-TCGATA-GATGAGCC
* * * * ** *
81204515 AGTATAAGA-CATATCTGGGACAT-GCATCGGCCTCGAGATTTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTCGATAGATGAGCC
*
81204561 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCG--AGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTCGATAGATG--AGCC
* * **
81204607 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTAC-A-AGATGTGGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACT-CGATAGATGAGCC
* * * * * * * *
81204651 AGTGTAAGACTATGTCT-GGACATGGCTTCAACACGTATTGAGGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTCG-ATAGATGAGCC
* * * *
81204698 AATGTAAGACCATGTCTGGGACATTGCATCGACACGGATATG-TGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTC-GATA-GAT--GAGCC
* * ** * * *
81204748 AATGTAAGACCATGTCTGAGACATGGTGTCGGCCTCGATTTCGAT-AGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTCGA--TAGATGAGCC
* *
81204797 AGTGTAAGACTATGTCTAGGACATGGCATCGACTCGATAGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTCGATAGATGAGCC
*
81204844 AGTGTAAGACCATGTCTTGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
81204875 GCATTATACC
Statistics
Matches: 317, Mismatches: 65, Indels: 51
0.73 0.15 0.12
Matches are distributed among these distances:
44 19 0.06
45 14 0.04
46 96 0.30
47 81 0.26
48 37 0.12
49 29 0.09
50 32 0.10
51 7 0.02
52 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTCGATAGATGAGCC
Found at i:81205939 original size:20 final size:21
Alignment explanation
Indices: 81205914--81205963 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
81205904 GCATTTAATT
81205914 CACACGGGCGTGTT-CCCTTC
1 CACACGGGCGTGTTGCCCTTC
81205934 CACACGGGCGTGTTGCCCTTC
1 CACACGGGCGTGTTGCCCTTC
81205955 CACACGGGC
1 CACACGGGC
81205964 ATGTACCCTG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 14 0.48
21 15 0.52
ACGTcount: A:0.12, C:0.40, G:0.28, T:0.20
Consensus pattern (21 bp):
CACACGGGCGTGTTGCCCTTC
Found at i:81212213 original size:26 final size:26
Alignment explanation
Indices: 81212177--81212228 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
81212167 GTGCTAGTGT
81212177 AAGACATGTCTGGGACATGCATCGGC
1 AAGACATGTCTGGGACATGCATCGGC
*
81212203 AAGACATGTCTGGGACATGTATCGGC
1 AAGACATGTCTGGGACATGCATCGGC
81212229 CACATCATGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.21
Consensus pattern (26 bp):
AAGACATGTCTGGGACATGCATCGGC
Found at i:81213289 original size:146 final size:146
Alignment explanation
Indices: 81212333--81213242 Score: 1820
Period size: 146 Copynumber: 6.2 Consensus size: 146
81212323 TATGAAATGT
81212333 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATTGAGTTGTAGTGTAAGACCATGT
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATTGAGTTGTAGTGTAAGACCATGT
81212398 CTGGGATATGGCATCGGCACAGATATGTGAGAGCTAGTGTAAGACCATGTCTGAGACATGGCGTC
66 CTGGGATATGGCATCGGCACAGATATGTGAGAGCTAGTGTAAGACCATGTCTGAGACATGGCGTC
81212463 GGCCTCGATTTCGATA
131 GGCCTCGATTTCGATA
81212479 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATTGAGTTGTAGTGTAAGACCATGT
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATTGAGTTGTAGTGTAAGACCATGT
81212544 CTGGGATATGGCATCGGCACAGATATGTGAGAGCTAGTGTAAGACCATGTCTGAGACATGGCGTC
66 CTGGGATATGGCATCGGCACAGATATGTGAGAGCTAGTGTAAGACCATGTCTGAGACATGGCGTC
81212609 GGCCTCGATTTCGATA
131 GGCCTCGATTTCGATA
81212625 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATTGAGTTGTAGTGTAAGACCATGT
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATTGAGTTGTAGTGTAAGACCATGT
81212690 CTGGGATATGGCATCGGCACAGATATGTGAGAGCTAGTGTAAGACCATGTCTGAGACATGGCGTC
66 CTGGGATATGGCATCGGCACAGATATGTGAGAGCTAGTGTAAGACCATGTCTGAGACATGGCGTC
81212755 GGCCTCGATTTCGATA
131 GGCCTCGATTTCGATA
81212771 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATTGAGTTGTAGTGTAAGACCATGT
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATTGAGTTGTAGTGTAAGACCATGT
81212836 CTGGGATATGGCATCGGCACAGATATGTGAGAGCTAGTGTAAGACCATGTCTGAGACATGGCGTC
66 CTGGGATATGGCATCGGCACAGATATGTGAGAGCTAGTGTAAGACCATGTCTGAGACATGGCGTC
81212901 GGCCTCGATTTCGATA
131 GGCCTCGATTTCGATA
81212917 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATTGAGTTGTAGTGTAAGACCATGT
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATTGAGTTGTAGTGTAAGACCATGT
81212982 CTGGGATATGGCATCGGCACAGATATGTGAGAGCTAGTGTAAGACCATGTCTGAGACATGGCGTC
66 CTGGGATATGGCATCGGCACAGATATGTGAGAGCTAGTGTAAGACCATGTCTGAGACATGGCGTC
81213047 GGCCTCGATTTCGATA
131 GGCCTCGATTTCGATA
81213063 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATTGAGTTGTAGTGTAAGACCATGT
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATTGAGTTGTAGTGTAAGACCATGT
81213128 CTGGGATATGGCATCGGCACAGATATGTGAGAGCTAGTGTAAGACCATGTCTGAGACATGGCGTC
66 CTGGGATATGGCATCGGCACAGATATGTGAGAGCTAGTGTAAGACCATGTCTGAGACATGGCGTC
81213193 GGCCTCGATTTCGATA
131 GGCCTCGATTTCGATA
81213209 GTCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCG
81213243 ACTTGATGGA
Statistics
Matches: 764, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
146 764 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.26
Consensus pattern (146 bp):
GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATTGAGTTGTAGTGTAAGACCATGT
CTGGGATATGGCATCGGCACAGATATGTGAGAGCTAGTGTAAGACCATGTCTGAGACATGGCGTC
GGCCTCGATTTCGATA
Found at i:81215689 original size:88 final size:90
Alignment explanation
Indices: 81215583--81215758 Score: 248
Period size: 88 Copynumber: 2.0 Consensus size: 90
81215573 TAATACACAA
* * * *
81215583 TACACAAAAATTTAAAATTCAAATTACAAATAATACAAACTAAATTAAATTTTTATATAC-AAAA
1 TACACAAAAATATAAAATTCAAACTACAAATAATACAAACTAAATTAAATTTATAGATACAAAAA
81215647 AATACAAACATTCT-AAGAAATTAT
66 AATACAAACATTCTAAAGAAATTAT
* * **
81215671 TACACGAAAATATAAAATTGAAACTACAAATAATACCGACTAAATTAAATTTATAGATACAAAAA
1 TACACAAAAATATAAAATTCAAACTACAAATAATACAAACTAAATTAAATTTATAGATAC-AAAA
*
81215736 AAATACAAACATTTTAAAGAAAT
65 AAATACAAACATTCTAAAGAAAT
81215759 AATACAAAAA
Statistics
Matches: 76, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
88 52 0.68
90 17 0.22
91 7 0.09
ACGTcount: A:0.57, C:0.11, G:0.03, T:0.28
Consensus pattern (90 bp):
TACACAAAAATATAAAATTCAAACTACAAATAATACAAACTAAATTAAATTTATAGATACAAAAA
AATACAAACATTCTAAAGAAATTAT
Found at i:81221616 original size:6 final size:6
Alignment explanation
Indices: 81221607--81221636 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
81221597 TTTTATACTT
81221607 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
81221637 GATTTTGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
ATAAAA
Found at i:81222387 original size:15 final size:15
Alignment explanation
Indices: 81222369--81222422 Score: 90
Period size: 15 Copynumber: 3.6 Consensus size: 15
81222359 TTTTTTTTCC
81222369 TCTTCTTTCGAAATT
1 TCTTCTTTCGAAATT
81222384 TCTTCTTTCGAAATT
1 TCTTCTTTCGAAATT
*
81222399 TCTTCTTTTGAAATT
1 TCTTCTTTCGAAATT
*
81222414 TTTTCTTTC
1 TCTTCTTTC
81222423 TTTCTTTATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.17, C:0.19, G:0.06, T:0.59
Consensus pattern (15 bp):
TCTTCTTTCGAAATT
Found at i:81222390 original size:18 final size:18
Alignment explanation
Indices: 81222364--81222426 Score: 57
Period size: 15 Copynumber: 3.8 Consensus size: 18
81222354 TTTTCTTTTT
*
81222364 TTTCCTCTTCTTTCGAAA
1 TTTCTTCTTCTTTCGAAA
81222382 --T-TTCTTCTTTCGAAA
1 TTTCTTCTTCTTTCGAAA
81222397 TTTCTTC-T-TTT-GAAA
1 TTTCTTCTTCTTTCGAAA
*
81222412 TTTTTTCTTTCTTTC
1 TTTCTTC-TTCTTTC
81222427 TTTATATATA
Statistics
Matches: 36, Mismatches: 2, Indels: 13
0.71 0.04 0.25
Matches are distributed among these distances:
15 23 0.64
16 4 0.11
17 3 0.08
18 6 0.17
ACGTcount: A:0.14, C:0.21, G:0.05, T:0.60
Consensus pattern (18 bp):
TTTCTTCTTCTTTCGAAA
Found at i:81225495 original size:39 final size:38
Alignment explanation
Indices: 81225439--81225516 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 38
81225429 TACAACCAGC
*
81225439 TTAGTAGGGAAATGATCCGATCTTGGAAGGACTTGGCA
1 TTAGTAGGGAAAGGATCCGATCTTGGAAGGACTTGGCA
81225477 NTTAGTAGGGAAAGGATCCGATCTTGGAAGGACTTGGCA
1 -TTAGTAGGGAAAGGATCCGATCTTGGAAGGACTTGGCA
81225516 T
1 T
81225517 CAGCATTCTG
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
38 1 0.03
39 37 0.97
ACGTcount: A:0.28, C:0.13, G:0.32, T:0.26
Consensus pattern (38 bp):
TTAGTAGGGAAAGGATCCGATCTTGGAAGGACTTGGCA
Found at i:81229419 original size:35 final size:35
Alignment explanation
Indices: 81229371--81229440 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
81229361 CGATGATATG
*
81229371 ATTGCTAAATTCCGAAGGGAAGAAGAGCATGTAGC
1 ATTGCTAAATTCCGAAGGGAAGAAAAGCATGTAGC
* *
81229406 ATTGCTAAGTTCCGAGGGGAAGAAAAGCATGTAGC
1 ATTGCTAAATTCCGAAGGGAAGAAAAGCATGTAGC
81229441 GAACCTGAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.36, C:0.14, G:0.30, T:0.20
Consensus pattern (35 bp):
ATTGCTAAATTCCGAAGGGAAGAAAAGCATGTAGC
Found at i:81233085 original size:90 final size:90
Alignment explanation
Indices: 81232931--81233095 Score: 260
Period size: 90 Copynumber: 1.8 Consensus size: 90
81232921 CAATTTCTGC
* *
81232931 TTTTCAAAAAAAATCAACTCATACTGCGAGAGGTAAGTTGAGCCTCAAGGCACGTTGAGGTAATT
1 TTTTCAAAAAAAATCAACTCATACTGCGAGAGGTAAGTTGAGCCTCAAGGCACGCTGAGATAATT
81232996 TCAATTTCTGCTTTTAAATTTATAT
66 TCAATTTCTGCTTTTAAATTTATAT
* * * *
81233021 TTTTCAAAAAAATTTAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGCTGAGATAAT
1 TTTTCAAAAAAAATCAACTCATACTGCGAGAGGTAAGTTGAGCCTCAAGG-CACGCTGAGATAAT
81233085 TTCAATTTCTG
65 TTCAATTTCTG
81233096 TTGTCAAAAA
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
89 3 0.04
90 65 0.96
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (90 bp):
TTTTCAAAAAAAATCAACTCATACTGCGAGAGGTAAGTTGAGCCTCAAGGCACGCTGAGATAATT
TCAATTTCTGCTTTTAAATTTATAT
Found at i:81233105 original size:73 final size:74
Alignment explanation
Indices: 81233020--81233572 Score: 479
Period size: 73 Copynumber: 7.1 Consensus size: 74
81233010 TAAATTTATA
* *
81233020 TTTTTCAAAAAAATTTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATAAT
1 TTTTTC-AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAT
81233085 TTCAATTTCTG
64 TTCAATTTCTG
* ** ** *
81233096 -TTGTCAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAATACATGCTGAGGTA
1 TTTTTC----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
* *
81233160 TTTTCAATTTTTG
62 ATTTCAATTTCTG
* ** * *
81233173 TCTTTCAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA
1 TTTTTC----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
*
81233238 GTTTCAATTTCTG
62 ATTTCAATTTCTG
*
81233251 TTCAATTT-ATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACAC
1 TT---TTTCA--------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
*
81233315 TGAGGTATTTTCAATTTCTG
55 TGAGGTAATTTCAATTTCTG
* * *
81233335 TTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACACTGAGGT-ATTG
1 TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT-
*
81233398 TCAATTTTTTG
65 TCAA-TTTCTG
* * ** *
81233409 TTTCAATCTATTTTTCAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAGGACACACTG
1 TTT--TTC-A------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
81233474 AGGTAATTTCAATTTCTG
57 AGGTAATTTCAATTTCTG
* * * *
81233492 TTTGTC-AATAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG-CACGTTAAGGTAATT
1 TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGCTGAGGTAATT
81233555 TCAATTTCTG
65 TCAATTTCTG
*
81233565 CTTTTCAA
1 TTTTTCAA
81233573 TTTATATTTT
Statistics
Matches: 401, Mismatches: 45, Indels: 64
0.79 0.09 0.13
Matches are distributed among these distances:
72 2 0.00
73 115 0.29
74 12 0.03
75 4 0.01
76 3 0.01
77 53 0.13
78 78 0.19
81 8 0.02
83 8 0.02
84 115 0.29
85 3 0.01
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.33
Consensus pattern (74 bp):
TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
CAATTTCTG
Found at i:81233432 original size:157 final size:155
Alignment explanation
Indices: 81233036--81234202 Score: 803
Period size: 182 Copynumber: 7.0 Consensus size: 155
81233026 AAAAAAATTT
* *
81233036 AACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGCTGAGATAATTTCAATTTCTGTTGT
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG-CACGTTGAGGT-ATTTCAATTTCTGTT-T
* ** **
81233100 CAA-A-A-----AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAATACATGCTGAGG
63 CAATATATTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACACTGAGG
* * *
81233158 TATTTTCAATTTTTGTCTTTCAAAAAAAAAATC
128 TAATTTCAATTTCTGTTTTTC-----AAAAATC
** *
81233191 AACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAGTTTCAATTTCTG-TTCA
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTGAGGTA-TTTCAATTTCTGTTTCA
* **
81233255 ATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGG
65 A--TATATTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACACTGAGG
*
81233320 TATTTTCAATTTCTGTTTTTCAAAAATC
128 TAATTTCAATTTCTGTTTTTCAAAAATC
** ** *
81233348 AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACACTGAGGTATTGTCAATTTTTTGTTTC
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTGAGGTATT-TCAA-TTTCTGTTTC
* *
81233413 AATCTATTTTTCAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAGGACACACTGAGGT
64 AATATATTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACACTGAGGT
* *
81233478 AATTTCAATTTCTGTTTGTCAATAATC
129 AATTTCAATTTCTGTTTTTCAAAAATC
*
81233505 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTAAGGTAATTTCAATTTCTGCTTTT
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTGAGGT-ATTTCAATTTCTG--TTT
** *
81233570 CAATTTATATTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG-CACG
63 CAA--TATATTTTTC--AAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTC-AGGACACA
* *
81233634 TTAAGGTAATTTCAATTTCTGCTTTTCAATTTATATTTTTCAAAAAAATTC
122 CTGAGGTAATTTCAATTTCTG--------------TTTTTC--AAAAA-TC
*
81233685 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAGCACGTTGAGGTAATTTCAATTTCTGCTTTT
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTGAGGT-ATTTCAATTTCTG--TTT
** *
81233750 CAATTTATATTTTTCAAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-AAGCAC
63 CAA--TATATTTTTC---AAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGA-CAC
**
81233814 GTTGAGGTAATTTCAATTTCTGCTTTTCAATTTATATTTTTCAAAAAAAATTC
121 ACTGAGGTAATTTCAATTTCTG--------------TTTTTC---AAAAA-TC
*
81233867 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAGCACGTTGAGGTAATTTCAATTTCTGCTTTT
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTGAGGT-ATTTCAATTTCTG--TTT
** *
81233932 CAATTTATATTTTTCAAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-AAGCAC
63 CAA--TATATTTTTC---AAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGA-CAC
**
81233996 GTTGAGGTAATTTCAATTTCTGCTTTTCAATTTATATTTTTCAAAAAAAATTC
121 ACTGAGGTAATTTCAATTTCTG--------------TTTTTC---AAAAA-TC
*
81234049 AACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACATGTTGAGGTAATTTCAATTTCTGTTGT
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG-CACGTTGAGGT-ATTTCAATTTCTGTT-T
* * * ** *** ** * * *
81234113 AAAAAAAAATAAAAAAAATCAACTTGTATTGCGAGAGACGAGTTGAGCCTCAGGTCACACGTCGA
63 CAATATATTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACAC-T-GA
* *
81234178 AGTATTTTCAATTTCTGTTTTTCAA
126 GGTAATTTCAATTTCTGTTTTTCAA
81234203 TTTTTGCCTT
Statistics
Matches: 893, Mismatches: 70, Indels: 93
0.85 0.07 0.09
Matches are distributed among these distances:
153 4 0.00
154 2 0.00
155 50 0.06
156 10 0.01
157 178 0.20
158 14 0.02
159 5 0.01
160 11 0.01
162 70 0.08
163 58 0.06
164 3 0.00
175 33 0.04
176 6 0.01
177 22 0.02
179 7 0.01
180 83 0.09
181 90 0.10
182 247 0.28
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (155 bp):
AACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTGAGGTATTTCAATTTCTGTTTCAA
TATATTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACACTGAGGTAA
TTTCAATTTCTGTTTTTCAAAAATC
Found at i:81234283 original size:91 final size:91
Alignment explanation
Indices: 81233503--81234253 Score: 1141
Period size: 91 Copynumber: 8.4 Consensus size: 91
81233493 TTGTCAATAA
* *
81233503 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTAAGGTAATTTCAATTTCTGCTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAGCACGTTGAGGTAATTTCAATTTCTGCTT
81233568 TTCAATTTATATTTTTC-AAAAAAAT
66 TTCAATTTATATTTTTCAAAAAAAAT
* *
81233593 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTAAGGTAATTTCAATTTCTGCTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAGCACGTTGAGGTAATTTCAATTTCTGCTT
81233658 TTCAATTTATATTTTTC-AAAAAAAT
66 TTCAATTTATATTTTTCAAAAAAAAT
81233683 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAGCACGTTGAGGTAATTTCAATTTCTGCTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAGCACGTTGAGGTAATTTCAATTTCTGCTT
81233748 TTCAATTTATATTTTTCAAAAAAAAT
66 TTCAATTTATATTTTTCAAAAAAAAT
81233774 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAGCACGTTGAGGTAATTTCAATTTCTGCTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAGCACGTTGAGGTAATTTCAATTTCTGCTT
81233839 TTCAATTTATATTTTTCAAAAAAAAT
66 TTCAATTTATATTTTTCAAAAAAAAT
81233865 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAGCACGTTGAGGTAATTTCAATTTCTGCTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAGCACGTTGAGGTAATTTCAATTTCTGCTT
81233930 TTCAATTTATATTTTTCAAAAAAAAT
66 TTCAATTTATATTTTTCAAAAAAAAT
81233956 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAGCACGTTGAGGTAATTTCAATTTCTGCTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAGCACGTTGAGGTAATTTCAATTTCTGCTT
81234021 TTCAATTTATATTTTTCAAAAAAAAT
66 TTCAATTTATATTTTTCAAAAAAAAT
* *
81234047 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACATGTTGAGGTAATTTCAATTTCTG-T
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAG-CACGTTGAGGTAATTTCAATTTCTGCT
* * ****
81234110 TGT-AA---AAAAAAAT-AAAAAAAA-
65 TTTCAATTTATATTTTTCAAAAAAAAT
** ** * * * *
81234131 TCAACTTGTATTGCGAGAGACGAGTTGAGCCTC-AGGTCACACGTCGAAGTATTTTCAATTTCTG
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAG---CACGTTGAGGTAATTTCAATTTCTG
* * ***
81234195 TTTTTCAATTTTTGCCTTTC-AAAAAAA-
63 CTTTTCAATTTATATTTTTCAAAAAAAAT
*
81234222 TCGACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCT
81234254 TGGCTCACAC
Statistics
Matches: 620, Mismatches: 31, Indels: 19
0.93 0.05 0.03
Matches are distributed among these distances:
84 32 0.05
85 8 0.01
86 25 0.04
87 3 0.00
88 2 0.00
89 2 0.00
90 175 0.28
91 373 0.60
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.35
Consensus pattern (91 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAGCACGTTGAGGTAATTTCAATTTCTGCTT
TTCAATTTATATTTTTCAAAAAAAAT
Found at i:81235239 original size:15 final size:15
Alignment explanation
Indices: 81235219--81235272 Score: 90
Period size: 15 Copynumber: 3.6 Consensus size: 15
81235209 CTTTTTTTCC
81235219 TCTTCTTTCGAAATT
1 TCTTCTTTCGAAATT
81235234 TCTTCTTTCGAAATT
1 TCTTCTTTCGAAATT
*
81235249 TCTTCTTTTGAAATT
1 TCTTCTTTCGAAATT
*
81235264 TTTTCTTTC
1 TCTTCTTTC
81235273 TTTCTTTATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.17, C:0.19, G:0.06, T:0.59
Consensus pattern (15 bp):
TCTTCTTTCGAAATT
Found at i:81235984 original size:16 final size:17
Alignment explanation
Indices: 81235953--81235985 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
81235943 TTGTATATAT
81235953 TATATTTATATTATGTA
1 TATATTTATATTATGTA
*
81235970 TATATTT-TTTTATGTA
1 TATATTTATATTATGTA
81235986 CGTTTCCTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (17 bp):
TATATTTATATTATGTA
Found at i:81241173 original size:125 final size:125
Alignment explanation
Indices: 81240951--81241200 Score: 464
Period size: 125 Copynumber: 2.0 Consensus size: 125
81240941 CAAAATTAAA
*
81240951 CACAATTTGCAATAATTATAACATAAATAAACTTGGACAATTGCTTTAACTAAACTCAATTTATT
1 CACAATTTGCAATAATTATAACATAAATAAACTTAGACAATTGCTTTAACTAAACTCAATTTATT
**
81241016 ATCGACATGCTTAATAACATTCGGAAAAAATATTCCACGGTAACTCGATCTTTCATGAAT
66 ATCGACATGCTTAATAACATTCGGAAAAAATATTCCACGACAACTCGATCTTTCATGAAT
81241076 CACAATTTGCAATAATTATAACATAAATAAACTTAGACAATTGCTTTAACTAAACTCAATTTATT
1 CACAATTTGCAATAATTATAACATAAATAAACTTAGACAATTGCTTTAACTAAACTCAATTTATT
*
81241141 ATCGACATGCTTAATAACATTCGGAAAAAATATTCCACGACAACTCGTTCTTTCATGAAT
66 ATCGACATGCTTAATAACATTCGGAAAAAATATTCCACGACAACTCGATCTTTCATGAAT
81241201 TTGGAAACCA
Statistics
Matches: 121, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
125 121 1.00
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (125 bp):
CACAATTTGCAATAATTATAACATAAATAAACTTAGACAATTGCTTTAACTAAACTCAATTTATT
ATCGACATGCTTAATAACATTCGGAAAAAATATTCCACGACAACTCGATCTTTCATGAAT
Found at i:81251859 original size:28 final size:28
Alignment explanation
Indices: 81251827--81251881 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
81251817 ACGGCCATGA
*
81251827 CACACGGGTGTGTAG-TCTACCCGTGTGT
1 CACACGGGCGTGTAGATC-ACCCGTGTGT
*
81251855 CACACGGGCGTGTGGATCACCCGTGTG
1 CACACGGGCGTGTAGATCACCCGTGTG
81251882 GAAGTGCCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 22 0.92
29 2 0.08
ACGTcount: A:0.15, C:0.27, G:0.35, T:0.24
Consensus pattern (28 bp):
CACACGGGCGTGTAGATCACCCGTGTGT
Found at i:81252625 original size:4 final size:4
Alignment explanation
Indices: 81252616--81252652 Score: 74
Period size: 4 Copynumber: 9.2 Consensus size: 4
81252606 TTACTATCAA
81252616 TATG TATG TATG TATG TATG TATG TATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG T
81252653 TTTTTTTTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:81266315 original size:79 final size:79
Alignment explanation
Indices: 81266209--81266359 Score: 189
Period size: 79 Copynumber: 1.9 Consensus size: 79
81266199 TACTGTTAAC
* * * * * * * *
81266209 AATAGAAATTGAATAAATTTTGTTGAACGAA-AGGAATAGAATCTTGAAACAGAA-TTGTTTAAT
1 AATAGAAATCGAACAAATTCTGCTGAAC-AACAGAAATAAAATCCTGAAACAGAATTTGTTCAAT
*
81266272 TGATTTCTATTTGGA
65 GGATTTCTATTTGGA
81266287 AATAGAAAATCGAACAAATTCTGCTGAACAACAGAAATAAAATCCTGAAACAGAATTTGTTCAAT
1 AATAG-AAATCGAACAAATTCTGCTGAACAACAGAAATAAAATCCTGAAACAGAATTTGTTCAAT
81266352 GGATTTCT
65 GGATTTCT
81266360 GTTTACAAAA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
78 7 0.11
79 39 0.64
80 15 0.25
ACGTcount: A:0.43, C:0.10, G:0.16, T:0.31
Consensus pattern (79 bp):
AATAGAAATCGAACAAATTCTGCTGAACAACAGAAATAAAATCCTGAAACAGAATTTGTTCAATG
GATTTCTATTTGGA
Found at i:81271134 original size:10 final size:11
Alignment explanation
Indices: 81271114--81271139 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
81271104 AGGTTTTCCC
81271114 TTTTTCTTTTT
1 TTTTTCTTTTT
81271125 TTTTTCTTTTT
1 TTTTTCTTTTT
81271136 TTTT
1 TTTT
81271140 GTGGAAGATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTCTTTTT
Found at i:81277639 original size:25 final size:25
Alignment explanation
Indices: 81277605--81277674 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
81277595 AGCTATAAAC
*
81277605 GGTAAACTCCTCCGAGCTGAATAAT
1 GGTAAGCTCCTCCGAGCTGAATAAT
*
81277630 GGTAAGCTCCTCCGAGTTGAATAAT
1 GGTAAGCTCCTCCGAGCTGAATAAT
* * *
81277655 AGTAAGCTCATACGAGCTGA
1 GGTAAGCTCCTCCGAGCTGA
81277675 GTATTTGTAA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.24
Consensus pattern (25 bp):
GGTAAGCTCCTCCGAGCTGAATAAT
Found at i:81282957 original size:92 final size:91
Alignment explanation
Indices: 81282835--81283457 Score: 746
Period size: 92 Copynumber: 6.8 Consensus size: 91
81282825 GATCCATTGT
* * * *
81282835 ATCTTTAGGGATATAGGATTTATAGCTTTATCTTGCTCCACTACAACTTTAGGGAGATAAGATTC
1 ATCTTCAGGGATATAGGATTTATAGCTTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTC
*
81282900 GCTATTAACTTCGATCTTGTCCATTGC
66 GCTATTAACTTCGATC-TGTCCACTGC
* * * * * * * *
81282927 ATCTTTAGGGATATAGGATTTATAGTTTTATCTTACTCCATTGCAACTTTAGAGAGATAAGATTT
1 ATCTTCAGGGATATAGGATTTATAGCTTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTC
** * *
81282992 GCTATTAACTTCGATCCAATCCAGTGT
66 GCTATTAACTTCGAT-CTGTCCACTGC
* * *
81283019 ATCTTCATGGATATAGGATTTATAGCTTCATCTTGCTCCACTACAACTTTAGGGAGATAAGATTC
1 ATCTTCAGGGATATAGGATTTATAGCTTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTC
* * **
81283084 GCTATTAACTTCGATCCGTCTACTAT
66 GCTATTAACTTCGATCTGTCCACTGC
*
81283110 ATCTTCAGGGATATAGGATTTATTA-CTTCATCTTGGTCCACTGCAACTTCAGGGAGATAAGATT
1 ATCTTCAGGGATATAGGATTTA-TAGCTTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATT
*
81283174 CGCTATTAACTTTGATCTGATCCACTGC
65 CGCTATTAACTTCGATCTG-TCCACTGC
*
81283202 ATCTTCAGGGATATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTC
1 ATCTTCAGGGATATAGGATTTATAGCTTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTC
*
81283267 GCTATTAACTTTGATCTGATCCACTGC
66 GCTATTAACTTCGATCTG-TCCACTGC
* *
81283294 ATCTTCAGGGATATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTT
1 ATCTTCAGGGATATAGGATTTATAGCTTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTC
* * * * ** *
81283359 GCTGCTGTAATTTCAATCTATTATATTGC
66 GCT-AT-TAACTTCGATCT-GTCCACTGC
** * * ** * *
81283388 AAATTTAGGGATATAGGATTTGTAGCTTTGTCTTGCTCCATTGCAACTTCAGAGAGATAAGACTT
1 ATCTTCAGGGATATAGGATTTATAGCTTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGA-TT
81283453 -GCTAT
65 CGCTAT
81283458 AATAGCTTCA
Statistics
Matches: 471, Mismatches: 52, Indels: 15
0.88 0.10 0.03
Matches are distributed among these distances:
91 82 0.17
92 312 0.66
93 3 0.01
94 72 0.15
95 2 0.00
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (91 bp):
ATCTTCAGGGATATAGGATTTATAGCTTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTC
GCTATTAACTTCGATCTGTCCACTGC
Found at i:81283037 original size:184 final size:183
Alignment explanation
Indices: 81282734--81283361 Score: 801
Period size: 184 Copynumber: 3.4 Consensus size: 183
81282724 TCATTCCAAC
* * * * * * * *
81282734 CCACTGCAACTTCAGAGG-TACAAGATTTGTAGCTTTATCTTGCTTCACTGTAACTTTAGGGAGA
1 CCACTGCATCTTCAG-GGATATAGGATTTATAGCTTCATCTTGCTCCACTGCAACTTCAGGGAGA
* * * * * * * * *
81282798 AAATATTTGATATTATAATTTTGATTCGATCCATTGTATCTTTAGGGATATAGGATTTATAGCTT
65 TAAGATTTGCTA-T-TAACTTCGATCCAATCCACTGTATCTTCAGGGATATAGGATTTATAGCTT
*
81282863 TATCTTGCTCCACTACAACTTTAGGGAGATAAGATTCGCTATTAACTTCGATCTTGT
128 CATCTTGCTCCACTACAACTTTAGGGAGATAAGATTCGCTATTAACTTCGATC-TGT
* * * * * * * *
81282920 CCATTGCATCTTTAGGGATATAGGATTTATAGTTTTATCTTACTCCATTGCAACTTTAGAGAGAT
1 CCACTGCATCTTCAGGGATATAGGATTTATAGCTTCATCTTGCTCCACTGCAACTTCAGGGAGAT
* *
81282985 AAGATTTGCTATTAACTTCGATCCAATCCAGTGTATCTTCATGGATATAGGATTTATAGCTTCAT
66 AAGATTTGCTATTAACTTCGATCCAATCCACTGTATCTTCAGGGATATAGGATTTATAGCTTCAT
*
81283050 CTTGCTCCACTACAACTTTAGGGAGATAAGATTCGCTATTAACTTCGATCCGT
131 CTTGCTCCACTACAACTTTAGGGAGATAAGATTCGCTATTAACTTCGATCTGT
* ** *
81283103 CTACTATATCTTCAGGGATATAGGATTTATTA-CTTCATCTTGGTCCACTGCAACTTCAGGGAGA
1 CCACTGCATCTTCAGGGATATAGGATTTA-TAGCTTCATCTTGCTCCACTGCAACTTCAGGGAGA
* * ** * *
81283167 TAAGATTCGCTATTAACTTTGATCTGATCCACTGCATCTTCAGGGATATAGGATTTGTAGCTTCA
65 TAAGATTTGCTATTAACTTCGATCCAATCCACTGTATCTTCAGGGATATAGGATTTATAGCTTCA
* * *
81283232 TCTTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATTAACTTTGATCTGAT
130 TCTTGCTCCACTACAACTTTAGGGAGATAAGATTCGCTATTAACTTCGATCTG-T
*
81283287 CCACTGCATCTTCAGGGATATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGAGAT
1 CCACTGCATCTTCAGGGATATAGGATTTATAGCTTCATCTTGCTCCACTGCAACTTCAGGGAGAT
81283352 AAGATTTGCT
66 AAGATTTGCT
81283362 GCTGTAATTT
Statistics
Matches: 384, Mismatches: 54, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
183 159 0.41
184 164 0.43
185 3 0.01
186 58 0.15
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (183 bp):
CCACTGCATCTTCAGGGATATAGGATTTATAGCTTCATCTTGCTCCACTGCAACTTCAGGGAGAT
AAGATTTGCTATTAACTTCGATCCAATCCACTGTATCTTCAGGGATATAGGATTTATAGCTTCAT
CTTGCTCCACTACAACTTTAGGGAGATAAGATTCGCTATTAACTTCGATCTGT
Found at i:81283332 original size:275 final size:278
Alignment explanation
Indices: 81282728--81283357 Score: 813
Period size: 275 Copynumber: 2.3 Consensus size: 278
81282718 GTAGCTTCAT
* * * * * * *
81282728 TCCAACCCACTGCAACTTCAGAGG-TACAAGATTTGTAGCTTTATCTTGCTTCACTGTAACTTTA
1 TCCAATCCACTGCATCTTCAG-GGATATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTTA
* * * * * * * * *
81282792 GGGAGAAAATATTTGATATTATAATTTTGATTCGATCCATTGTATCTTTAGGGATATAGGATTTA
65 GGGAGATAAGATTCGATATTATAACTTCGATCCGATCCACTATATCTTCAGGGATATAGGATTTA
* *
81282857 TAGCTTTATCTTGCTCCACTACAACTTTAGGGAGATAAGATTCGCTATTAACTTCGATCTTGTCC
130 TAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGATTCGCTATTAACTTCGATCTTGTCC
* * * * * *
81282922 ATTGCATCTTTAGGGATATAGGATTTATAGTTTTATCTTACTCCATTGCAACTTTAGAGAGATAA
195 ACTGCATCTTCAGGGATATAGGATTTATAGCTTCATCTTACTCCACTGCAACTTCAGAGAGATAA
*
81282987 GATTTGCTATTAACTTCGA
260 GATTCGCTATTAACTTCGA
* * * * *
81283006 TCCAATCCAGTGTATCTTCATGGATATAGGATTTATAGCTTCATCTTGCTCCACTACAACTTTAG
1 TCCAATCCACTGCATCTTCAGGGATATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTTAG
* *
81283071 GGAGATAAGATTCGCTA-T-TAACTTCGATCCG-TCTACTATATCTTCAGGGATATAGGATTTAT
66 GGAGATAAGATTCGATATTATAACTTCGATCCGATCCACTATATCTTCAGGGATATAGGATTTA-
* * *
81283133 TA-CTTCATCTTGGTCCACTGCAACTTCAGGGAGATAAGATTCGCTATTAACTTTGATC-TGATC
130 TAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGATTCGCTATTAACTTCGATCTTG-TC
* * *
81283196 CACTGCATCTTCAGGGATATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGAGATA
194 CACTGCATCTTCAGGGATATAGGATTTATAGCTTCATCTTACTCCACTGCAACTTCAGAGAGATA
*
81283261 AGATTCGCTATTAACTTTGA
259 AGATTCGCTATTAACTTCGA
** *
81283281 TCTGATCCACTGCATCTTCAGGGATATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAG
1 TCCAATCCACTGCATCTTCAGGGATATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTTAG
81283346 GGAGATAAGATT
66 GGAGATAAGATT
81283358 TGCTGCTGTA
Statistics
Matches: 302, Mismatches: 47, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
274 2 0.01
275 222 0.74
276 12 0.04
277 3 0.01
278 63 0.21
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (278 bp):
TCCAATCCACTGCATCTTCAGGGATATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTTAG
GGAGATAAGATTCGATATTATAACTTCGATCCGATCCACTATATCTTCAGGGATATAGGATTTAT
AGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGATTCGCTATTAACTTCGATCTTGTCCA
CTGCATCTTCAGGGATATAGGATTTATAGCTTCATCTTACTCCACTGCAACTTCAGAGAGATAAG
ATTCGCTATTAACTTCGA
Found at i:81283359 original size:44 final size:44
Alignment explanation
Indices: 81282629--81283359 Score: 242
Period size: 44 Copynumber: 15.9 Consensus size: 44
81282619 ATGTTACAGT
* * * *
81282629 TTCATCTTGCTCCATTGCAACTTCAAGGAGATAAGATTTGTTGT
1 TTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGC
* * * * * * *
81282673 TGTAATTTCAATCCATTCCACTACAACTTTAGGGATATAGGATTTGTAGC
1 T-TCA--TC-TTGC--TCCACTGCAACTTCAGGGAGATAAGATTTGTAGC
*** * *
81282723 TTCATTCCAAC-CCACTGCAACTTCAGAGG-TACAAGATTTGTAGC
1 TTCA-TCTTGCTCCACTGCAACTTCAG-GGAGATAAGATTTGTAGC
* * * * * * *
81282767 TTTATCTTGCTTCACTGTAACTTTAGGGAGAAAATATTTGATA-T
1 TTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAGC
* * * * * * * * *
81282811 TATAATTTTGATTCGATCCATTGTATCTTTAGGGATATAGGATTTATAGC
1 T-TCATCTTG---C--TCCACTGCAACTTCAGGGAGATAAGATTTGTAGC
* * * * *
81282861 TTTATCTTGCTCCACTACAACTTTAGGGAGATAAGATTCGCTATTAAC
1 TTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATT---T-GTAGC
* * * * * * *
81282909 TTCGATCTTG-TCCATTGCATCTTTAGGGATATAGGATTTATAGT
1 TTC-ATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGC
* * * * * *
81282953 TTTATCTTACTCCATTGCAACTTTAGAGAGATAAGATTTGCTATTAAC
1 TTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTTG----TAGC
*** * * * * * * *
81283001 TTCGATC-CAATCCAGTGTATCTTCATGGATATAGGATTTATAGC
1 TTC-ATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGC
* * *
81283045 TTCATCTTGCTCCACTACAACTTTAGGGAGATAAGATTCGCTA--
1 TTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAGC
* * * * * * *
81283088 TT-AACTTCGATCCGTCTACTATATCTTCAGGGATATAGGATTTATTA-C
1 TTCATCTT-GCTCC-ACTGC-A-A-CTTCAGGGAGATAAGATTT-GTAGC
* * *
81283136 TTCATCTTGGTCCACTGCAACTTCAGGGAGATAAGATTCGCTATTAAC
1 TTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATT---T-GTAGC
* * * * *
81283184 TTTGATC-TGATCCACTGCATCTTCAGGGATATAGGATTTGTAGC
1 -TTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGC
* *
81283228 TTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATTAAC
1 TTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATT---T-GTAGC
* * * * *
81283276 TTTGATC-TGATCCACTGCATCTTCAGGGATATAGGATTTGTAGC
1 -TTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGC
81283320 TTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTTG
1 TTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTTG
81283360 CTGCTGTAAT
Statistics
Matches: 502, Mismatches: 135, Indels: 100
0.68 0.18 0.14
Matches are distributed among these distances:
42 4 0.01
43 29 0.06
44 210 0.42
45 19 0.04
46 3 0.01
47 30 0.06
48 124 0.25
49 33 0.07
50 50 0.10
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.37
Consensus pattern (44 bp):
TTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGC
Found at i:81285989 original size:42 final size:42
Alignment explanation
Indices: 81285878--81286033 Score: 159
Period size: 42 Copynumber: 3.7 Consensus size: 42
81285868 TATCATACCA
* **** *
81285878 ATGCCATATCCCAGATATGGTGTTACATGGGATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACAAAATCTCATATCG
* * *
81285920 ATGCCAATAGCCCAGCTATGGTTTTACACAAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACAAAATCTCATATCG
* * * * * *
81285963 ATGCCATATCCCAGATATGGTCTTACACGAAGTTTTAAATTG
1 ATGCCATATCCCAGATATGGTCTTACACAAAATCTCATATCG
*
81286005 ATGCCATATCCCAAATATGGTCTTACACA
1 ATGCCATATCCCAGATATGGTCTTACACA
81286034 TAGTTTCAGT
Statistics
Matches: 94, Mismatches: 19, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
42 60 0.64
43 34 0.36
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACAAAATCTCATATCG
Found at i:81291494 original size:42 final size:41
Alignment explanation
Indices: 81291448--81291559 Score: 109
Period size: 41 Copynumber: 2.7 Consensus size: 41
81291438 GAGTTATTAA
** * * *
81291448 GTAAGACCATATCTGGGATATGGTGTTGA-TATGAGATTTCGT
1 GTAAGACCATATCTGGGATATGGAATCGAGCA--AGAATTCGT
* * *
81291490 GTAAGACCATGTCTGAGACATGGAATCGAGCAAGAATTCGT
1 GTAAGACCATATCTGGGATATGGAATCGAGCAAGAATTCGT
* *
81291531 ATAAGACCATATCTGGGATATGGCATCGA
1 GTAAGACCATATCTGGGATATGGAATCGA
81291560 TGTGAAATCC
Statistics
Matches: 56, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
41 32 0.57
42 23 0.41
43 1 0.02
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (41 bp):
GTAAGACCATATCTGGGATATGGAATCGAGCAAGAATTCGT
Found at i:81303935 original size:18 final size:17
Alignment explanation
Indices: 81303912--81303951 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
81303902 AAACTTAATG
*
81303912 ATTTTAATAAAAATGTTA
1 ATTTTAAT-AAAATGATA
*
81303930 ATTTTACTAAAATGATA
1 ATTTTAATAAAATGATA
81303947 ATTTT
1 ATTTT
81303952 CGGTCTACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (17 bp):
ATTTTAATAAAATGATA
Found at i:81304710 original size:9 final size:9
Alignment explanation
Indices: 81304696--81304730 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
81304686 CGATAATCAC
81304696 TTAATAATA
1 TTAATAATA
81304705 TTAATAATA
1 TTAATAATA
81304714 TTAATAATA
1 TTAATAATA
*
81304723 TCAATAAT
1 TTAATAAT
81304731 TAAAAATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (9 bp):
TTAATAATA
Found at i:81308105 original size:28 final size:29
Alignment explanation
Indices: 81308070--81308128 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
81308060 CCAAATCTCC
81308070 AAATTTTTATATTTTCCAAGTTAAATGCA
1 AAATTTTTATATTTTCCAAGTTAAATGCA
81308099 AAATTTTTATATTTTCCAAGTTAAATGCA
1 AAATTTTTATATTTTCCAAGTTAAATGCA
81308128 A
1 A
81308129 GTACCAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.39, C:0.10, G:0.07, T:0.44
Consensus pattern (29 bp):
AAATTTTTATATTTTCCAAGTTAAATGCA
Found at i:81308682 original size:27 final size:27
Alignment explanation
Indices: 81308652--81308707 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
81308642 ATCAAAGAAC
81308652 AAGCAATTTTAAGGCTAAACATCCATT
1 AAGCAATTTTAAGGCTAAACATCCATT
* *
81308679 AAGCAATTTTAGGGCTAAGCATCCATT
1 AAGCAATTTTAAGGCTAAACATCCATT
81308706 AA
1 AA
81308708 ATCTTGTAGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (27 bp):
AAGCAATTTTAAGGCTAAACATCCATT
Found at i:81308868 original size:14 final size:14
Alignment explanation
Indices: 81308851--81308881 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
81308841 AGGGATTTCA
81308851 GGATTTCGATTAGG
1 GGATTTCGATTAGG
*
81308865 GGATTTCGATTTGG
1 GGATTTCGATTAGG
81308879 GGA
1 GGA
81308882 AAAAATAAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.19, C:0.06, G:0.39, T:0.35
Consensus pattern (14 bp):
GGATTTCGATTAGG
Found at i:81308936 original size:38 final size:35
Alignment explanation
Indices: 81308877--81308967 Score: 98
Period size: 37 Copynumber: 2.6 Consensus size: 35
81308867 ATTTCGATTT
* *
81308877 GGGGAAAAAATAAGGGA-TTTGGAGATTATGATTTTTA
1 GGGGGAAAAATAAGGGATTTTGG-GATTAT--TGTTTA
* *
81308914 GGGGGAAAAATAAAGGATTTTGGGGTTATTGTTTA
1 GGGGGAAAAATAAGGGATTTTGGGATTATTGTTTA
81308949 -GGGG-AAAATAAGGGATTTT
1 GGGGGAAAAATAAGGGATTTT
81308968 TAGCTGTGCA
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
33 14 0.29
34 4 0.08
35 5 0.10
37 20 0.42
38 5 0.10
ACGTcount: A:0.35, C:0.00, G:0.33, T:0.32
Consensus pattern (35 bp):
GGGGGAAAAATAAGGGATTTTGGGATTATTGTTTA
Found at i:81309184 original size:41 final size:41
Alignment explanation
Indices: 81309034--81309184 Score: 144
Period size: 41 Copynumber: 3.7 Consensus size: 41
81309024 TTATCAATAA
* *
81309034 GCTATTGC-TTACCTTTTGCGGCGTTTTTCTCATAAATGTC
1 GCTATTGCTTTACCTTTTGCGGCGTTTTTCTCATAAACGCC
* * * * * * *
81309074 GCTAATGCTTT-TCTTTTGTGGCATTTTGCTCATAAACACT
1 GCTATTGCTTTACCTTTTGCGGCGTTTTTCTCATAAACGCC
* * * *
81309114 GCTACTACTTGACCTTTTGCGGCGATTTTCTCATAAACGCC
1 GCTATTGCTTTACCTTTTGCGGCGTTTTTCTCATAAACGCC
* * *
81309155 ACTATTGCTTTACCTATTGTGGCGTTTTTC
1 GCTATTGCTTTACCTTTTGCGGCGTTTTTC
81309185 CGTTAGCAAC
Statistics
Matches: 83, Mismatches: 26, Indels: 3
0.74 0.23 0.03
Matches are distributed among these distances:
40 36 0.43
41 47 0.57
ACGTcount: A:0.17, C:0.23, G:0.17, T:0.43
Consensus pattern (41 bp):
GCTATTGCTTTACCTTTTGCGGCGTTTTTCTCATAAACGCC
Found at i:81313291 original size:39 final size:40
Alignment explanation
Indices: 81313194--81313377 Score: 186
Period size: 40 Copynumber: 4.7 Consensus size: 40
81313184 TTGAATGATG
*
81313194 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
81313232 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
81313273 TCCGGGCTAAG-CCTGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
81313312 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
81313351 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
81313378 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 13, Indels: 17
0.80 0.08 0.11
Matches are distributed among these distances:
39 53 0.43
40 58 0.47
41 11 0.09
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:81313399 original size:79 final size:79
Alignment explanation
Indices: 81313246--81313410 Score: 185
Period size: 79 Copynumber: 2.1 Consensus size: 79
81313236 GGACTAAGAT
* * ** *
81313246 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCTGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
81313311 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
*
81313325 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
81313387 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
81313404 CCGAAGG
1 CCGAAGG
81313411 TACGTGATTT
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
78 3 0.04
79 46 0.63
80 24 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:81321254 original size:13 final size:14
Alignment explanation
Indices: 81321223--81321254 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
81321213 CAATCTTAAG
81321223 CAATCATTCACATA
1 CAATCATTCACATA
81321237 C-ATCATTCA-ATA
1 CAATCATTCACATA
81321249 CAATCA
1 CAATCA
81321255 CATTGTCTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
12 4 0.24
13 12 0.71
14 1 0.06
ACGTcount: A:0.44, C:0.28, G:0.00, T:0.28
Consensus pattern (14 bp):
CAATCATTCACATA
Found at i:81333310 original size:51 final size:51
Alignment explanation
Indices: 81333252--81333354 Score: 197
Period size: 51 Copynumber: 2.0 Consensus size: 51
81333242 GTGCTCTTAT
*
81333252 TCATTCGTTAATACACATTGATATGACTTAACCAAGTCTATAAATATCATG
1 TCATTCGTTAATACACATTGATATGACTTAACCAAGTCTATAAACATCATG
81333303 TCATTCGTTAATACACATTGATATGACTTAACCAAGTCTATAAACATCATG
1 TCATTCGTTAATACACATTGATATGACTTAACCAAGTCTATAAACATCATG
81333354 T
1 T
81333355 ATGTACACTT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35
Consensus pattern (51 bp):
TCATTCGTTAATACACATTGATATGACTTAACCAAGTCTATAAACATCATG
Found at i:81333576 original size:64 final size:64
Alignment explanation
Indices: 81333475--81333602 Score: 256
Period size: 64 Copynumber: 2.0 Consensus size: 64
81333465 ATACACGTCA
81333475 CCAGCATGATTACTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAATGCTCTTTGGGGTT
1 CCAGCATGATTACTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAATGCTCTTTGGGGTT
81333539 CCAGCATGATTACTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAATGCTCTTTGGGGTT
1 CCAGCATGATTACTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAATGCTCTTTGGGGTT
81333603 TAGCACGGAT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 64 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (64 bp):
CCAGCATGATTACTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAATGCTCTTTGGGGTT
Found at i:81333595 original size:40 final size:40
Alignment explanation
Indices: 81333551--81333971 Score: 499
Period size: 40 Copynumber: 10.5 Consensus size: 40
81333541 AGCATGATTA
* * * * *
81333551 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* ** * *
81333591 CTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
*
81333631 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
*
81333671 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* * * *
81333711 CTTTTCGGAACTTAGCCCGGATACATTACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* *
81333751 CTCTTCGGGACTTAGCCCGGATACATCGCTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* *
81333791 CTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* *
81333831 CTCTTCGGGACTTAGCCCGGATACATCGCTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
** * * *
81333871 CTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATG
1 CTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAATG
* ** *
81333912 C-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AAAG
1 CTCTTCGGGA-CTTAGCCCGGATA-CATCAC-TAGCACGAATG
81333952 C-CTTCGGGACTTAGCCCGGA
1 CTCTTCGGGACTTAGCCCGGA
81333972 CATCGTTCGA
Statistics
Matches: 336, Mismatches: 40, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
39 3 0.01
40 314 0.93
41 19 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
Found at i:81334318 original size:29 final size:29
Alignment explanation
Indices: 81334279--81334357 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
81334269 CTTAATAATC
*
81334279 AACCACGCACACTTAGTGCCATGTACTTTA-
1 AACC-CGCACACTTAGTGCCATGCA-TTTAT
*
81334309 AACTCGCACACTTAGTGCCATGCATTTAT
1 AACCCGCACACTTAGTGCCATGCATTTAT
**
81334338 TGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
81334358 ATCTCACAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
28 4 0.09
29 36 0.84
30 3 0.07
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.27
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTAT
Found at i:81336314 original size:37 final size:37
Alignment explanation
Indices: 81336264--81336342 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
81336254 TTATTACGAA
* * *
81336264 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
81336301 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
81336338 GTCTT
1 GTCTT
81336343 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:81336537 original size:49 final size:47
Alignment explanation
Indices: 81336460--81336568 Score: 182
Period size: 49 Copynumber: 2.3 Consensus size: 47
81336450 GCCCTTCGGG
81336460 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCTATCAC--ATATATAC
*
81336510 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
81336557 ACTTTCACATTC
1 ACTTTCACATTC
81336569 TCAAAGTAAG
Statistics
Matches: 58, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
47 20 0.34
49 34 0.59
50 4 0.07
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.32
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
Found at i:81336887 original size:24 final size:23
Alignment explanation
Indices: 81336839--81336896 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
81336829 TAATCAAACA
81336839 TTATTATATATATATCATATCATT
1 TTATTAT-TATATATCATATCATT
*
81336863 TTATTATTAT-TATCATTATTTATT
1 TTATTATTATATATCA-TA-TCATT
81336887 TTATT-TTATA
1 TTATTATTATA
81336897 CTTTTCAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 5 0.17
23 9 0.30
24 16 0.53
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (23 bp):
TTATTATTATATATCATATCATT
Found at i:81344689 original size:29 final size:28
Alignment explanation
Indices: 81344653--81344730 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
81344643 TCATGAGATT
81344653 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
81344683 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
81344710 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
81344731 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:81344998 original size:173 final size:174
Alignment explanation
Indices: 81344683--81345009 Score: 566
Period size: 173 Copynumber: 1.9 Consensus size: 174
81344673 AAATTGTACA
* *
81344683 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* *
81344748 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
81344813 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
81344857 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
*
81344922 TGTGC-AACCCAATATATTTTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
81344986 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
81345010 ACCTTGAGTT
Statistics
Matches: 144, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
173 80 0.56
174 64 0.44
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:81347529 original size:33 final size:33
Alignment explanation
Indices: 81347492--81347596 Score: 90
Period size: 33 Copynumber: 3.2 Consensus size: 33
81347482 TAGCTCGTGA
81347492 AGTGAAGGAGTTGCGAAACAAAAGGGTTCCGTT
1 AGTGAAGGAGTTGCGAAACAAAAGGGTTCCGTT
* ** *** * * * *
81347525 AGTGAAGGTGTTATGGCTC-AAA-CGCT-CATGA
1 AGTGAAGGAGTTGCGAAACAAAAGGGTTCCGT-T
81347556 AGTGAAGGAGTTGCGAAACAAAAGGGTTCCGTT
1 AGTGAAGGAGTTGCGAAACAAAAGGGTTCCGTT
81347589 AGTGAAGG
1 AGTGAAGG
81347597 TGTTATGGCT
Statistics
Matches: 48, Mismatches: 20, Indels: 8
0.63 0.26 0.11
Matches are distributed among these distances:
30 2 0.04
31 15 0.31
32 6 0.12
33 23 0.48
34 2 0.04
ACGTcount: A:0.32, C:0.12, G:0.33, T:0.22
Consensus pattern (33 bp):
AGTGAAGGAGTTGCGAAACAAAAGGGTTCCGTT
Found at i:81347564 original size:64 final size:64
Alignment explanation
Indices: 81347484--81347611 Score: 247
Period size: 64 Copynumber: 2.0 Consensus size: 64
81347474 GCGTATCCTA
*
81347484 GCTCGTGAAGTGAAGGAGTTGCGAAACAAAAGGGTTCCGTTAGTGAAGGTGTTATGGCTCAAAC
1 GCTCATGAAGTGAAGGAGTTGCGAAACAAAAGGGTTCCGTTAGTGAAGGTGTTATGGCTCAAAC
81347548 GCTCATGAAGTGAAGGAGTTGCGAAACAAAAGGGTTCCGTTAGTGAAGGTGTTATGGCTCAAAC
1 GCTCATGAAGTGAAGGAGTTGCGAAACAAAAGGGTTCCGTTAGTGAAGGTGTTATGGCTCAAAC
81347612 ACGGGATCGA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 63 1.00
ACGTcount: A:0.30, C:0.14, G:0.32, T:0.23
Consensus pattern (64 bp):
GCTCATGAAGTGAAGGAGTTGCGAAACAAAAGGGTTCCGTTAGTGAAGGTGTTATGGCTCAAAC
Found at i:81358061 original size:13 final size:13
Alignment explanation
Indices: 81358043--81358069 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
81358033 GTTTCTTATA
81358043 TGTAAAAATAGAC
1 TGTAAAAATAGAC
81358056 TGTAAAAATAGAC
1 TGTAAAAATAGAC
81358069 T
1 T
81358070 CAATAGGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.07, G:0.15, T:0.26
Consensus pattern (13 bp):
TGTAAAAATAGAC
Found at i:81358492 original size:94 final size:94
Alignment explanation
Indices: 81358325--81358952 Score: 463
Period size: 94 Copynumber: 6.7 Consensus size: 94
81358315 AGTTGAAATG
* * * * *
81358325 GCAAATCTAATCTCCCTAAAGTTGTAGTGGAGCAAGATGAAGCTAAAAATCCTATCTCCCTGAAG
1 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTATAAATCCTATATCCCTGAAG
* *
81358390 TTGCAGTGGGTCAGAAT-AAAATTACTATT
66 TTGAAGTGGATC-GAATCAAAATTACTATT
* ** *
81358419 GCAAATCTTATCTCCCTGAAGTTACAGTGGAGCAAGATGAAGCTATAAATCCTATATCTTTGAGG
1 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTATAAATCCTATATCCCTGAAG
* * *
81358484 TTGAAGTGGGTCAGAAT-GAAATTACTATA
66 TTGAAGTGGATC-GAATCAAAATTACTATT
* * * * *
81358513 GCAAATCTTATCTCACTAAAGTTGCAGTGGAGCAAGATAAAGCTATGAATCCTATATCCTTGAAG
1 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTATAAATCCTATATCCCTGAAG
* * **
81358578 ATTGAA-TGGATCGGATCAAAGTTAAAATAT
66 -TTGAAGTGGATCGAATCAAAATTACTAT-T
* * *
81358608 -CAAATCTTATCTCTCTGAAGTTGTAGCGGAGCAAGATGAAGC--TAAATCCTATATCCCTGAAG
1 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTATAAATCCTATATCCCTGAAG
* * * * * *
81358670 ATGCAGTGGATCGGATCGAAGTTAGTA--
66 TTGAAGTGGATCGAATCAAAATTACTATT
* * * * * *
81358697 CCAAATCTTATCTCCTTGAAGTTGCAATGGAGCAAGATGAAG-TCGTAAATCCTATATCTCTAAA
1 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCT-ATAAATCCTATATCCCTGAA
* * ***
81358761 GAT-ACAGTGGATCGGATCAATGCTA-TAATAT
65 GTTGA-AGTGGATCGAATCAAAATTACT-AT-T
* * * * * * * ** * *
81358792 -CAAATATTATCTCCCTAAAGTTGTATTAGAGTAAGATGAAGCTACAAATATTATAACCTTGAAG
1 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTATAAATCCTATATCCCTGAAG
* * * * * ** * *
81358856 ATGCAGTGGATTGTATCGAAGCTACCATA
66 TTGAAGTGGATCGAATCAAAATTACTATT
** * * * *
81358885 GTGAATCTTATCTCCATGAAGTTGCAGTAGAGCAAAATGAAGCTACAAATCCTATA-CCCTTGAA
1 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTATAAATCCTATATCCC-TGAA
81358949 GTTG
65 GTTG
81358953 CAGTAGGTTG
Statistics
Matches: 432, Mismatches: 84, Indels: 36
0.78 0.15 0.07
Matches are distributed among these distances:
90 36 0.08
91 4 0.01
92 74 0.17
93 5 0.01
94 307 0.71
95 6 0.01
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.29
Consensus pattern (94 bp):
GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTATAAATCCTATATCCCTGAAG
TTGAAGTGGATCGAATCAAAATTACTATT
Found at i:81358542 original size:50 final size:49
Alignment explanation
Indices: 81358371--81358542 Score: 151
Period size: 50 Copynumber: 3.6 Consensus size: 49
81358361 ATGAAGCTAA
*
81358371 AAATCCTATCTCCCTGAAGTTGCAGTGGGTCAGAATAAAATTACTATTGC
1 AAATCCTATCTCCCTGAAGTTGCAGTGGGTCAGAATGAAATTACTA-TGC
* * *
81358421 AAATCTTATCTCCCTGAAGTTACAGTGGAG-CA-AGATG-AA--GCTAT--
1 AAATCCTATCTCCCTGAAGTTGCAGTGG-GTCAGA-ATGAAATTACTATGC
* ** * *
81358465 AAATCCTATATCTTTGAGGTTGAAGTGGGTCAGAATGAAATTACTATAGC
1 AAATCCTATCTCCCTGAAGTTGCAGTGGGTCAGAATGAAATTACTAT-GC
* * *
81358515 AAATCTTATCTCACTAAAGTTGCAGTGG
1 AAATCCTATCTCCCTGAAGTTGCAGTGG
81358543 AGCAAGATAA
Statistics
Matches: 93, Mismatches: 19, Indels: 20
0.70 0.14 0.15
Matches are distributed among these distances:
43 1 0.01
44 26 0.28
45 3 0.03
46 1 0.01
47 7 0.08
49 3 0.03
50 51 0.55
51 1 0.01
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (49 bp):
AAATCCTATCTCCCTGAAGTTGCAGTGGGTCAGAATGAAATTACTATGC
Found at i:81358642 original size:188 final size:183
Alignment explanation
Indices: 81358325--81358949 Score: 526
Period size: 188 Copynumber: 3.3 Consensus size: 183
81358315 AGTTGAAATG
* * * *
81358325 GCAAATCTAATCTCCCTAAAGTTGTAGTGGAGCAAGATGAAGCTAAAAATCCTATCTCCCTGAAG
1 GCAAATCTTATCT-CCTAAAGTTGCAGTGGAGCAAGATGAAGCT--AAATCCTATATCCTTGAAG
* * * ** **
81358390 -TTGCAGTGGGTCAGAAT-AAAATTACTAT-TGCAAATCTTATCTCCCTGAAGTTACAGTGGAGC
63 ATTG-AGTGGATC-GGATCAAAGTTAAAATAT-CAAATCTTATCTCCCTGAAGTTGTAGTGGAGC
** * * *
81358452 AAGATGAAGCTATAAATCCTATATCTTTGAGGTTGAAGTGGGTCAGAAT-GAAATTACTATA
125 AAGATGAAGCTATAAATCCTATATCCCTGAAGATGAAGTGGATC-GAATCGAAATTA--ATA
*
81358513 GCAAATCTTATCTCACTAAAGTTGCAGTGGAGCAAGATAAAGCTATGAATCCTATATCCTTGAAG
1 GCAAATCTTATCTC-CTAAAGTTGCAGTGGAGCAAGATGAAGCTA--AATCCTATATCCTTGAAG
* * *
81358578 ATTGAATGGATCGGATCAAAGTTAAAATATCAAATCTTATCTCTCTGAAGTTGTAGCGGAGCAAG
63 ATTGAGTGGATCGGATCAAAGTTAAAATATCAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAAG
* * * *
81358643 ATGAAGC--TAAATCCTATATCCCTGAAGATGCAGTGGATCGGATCGAAGTTAGTA
128 ATGAAGCTATAAATCCTATATCCCTGAAGATGAAGTGGATCGAATCGAAATTAATA
* * * *
81358697 CCAAATCTTATCTCCTTGAAGTTGCAATGGAGCAAGATGAAGTCGTAAATCCTATAT-CTCTAAA
1 GCAAATCTTATCTCC-TAAAGTTGCAGTGGAGCAAGATGAAG-C-TAAATCCTATATCCT-TGAA
** * * * * * * * *
81358761 GATACAGTGGATCGGATCAATGCTATAATATCAAATATTATCTCCCTAAAGTTGTATTAGAGTAA
62 GATTGAGTGGATCGGATCAAAGTTAAAATATCAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAA
* ** * * * * * **
81358826 GATGAAGCTACAAATATTATAACCTTGAAGATGCAGTGGATTGTATCGAAGCTACCATA
127 GATGAAGCTATAAATCCTATATCCCTGAAGATGAAGTGGATCGAATCGAAATTA--ATA
** * * * *
81358885 GTGAATCTTATCTCCATGAAGTTGCAGTAGAGCAAAATGAAGCTACAAATCCTATACCCTTGAAG
1 GCAAATCTTATCTCC-TAAAGTTGCAGTGGAGCAAGATGAAGCT--AAATCCTATATCCTTGAAG
81358950 TTGCAGTAGG
Statistics
Matches: 359, Mismatches: 60, Indels: 36
0.79 0.13 0.08
Matches are distributed among these distances:
183 3 0.01
184 111 0.31
185 4 0.01
186 72 0.20
187 5 0.01
188 158 0.44
189 6 0.02
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (183 bp):
GCAAATCTTATCTCCTAAAGTTGCAGTGGAGCAAGATGAAGCTAAATCCTATATCCTTGAAGATT
GAGTGGATCGGATCAAAGTTAAAATATCAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAAGATG
AAGCTATAAATCCTATATCCCTGAAGATGAAGTGGATCGAATCGAAATTAATA
Found at i:81358774 original size:184 final size:183
Alignment explanation
Indices: 81358420--81358945 Score: 520
Period size: 184 Copynumber: 2.8 Consensus size: 183
81358410 ATTACTATTG
** * * *
81358420 CAAATCTTATCTCCCTGAAGTTACAGTGGAGCAAGATGAAGCTATAAATCCTATATCTTTGAGGT
1 CAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAAGATGAAGC--TAAATCCTATATCCTTGAAGA
* * * *
81358485 TGAAGTGGGTCAGAAT-GAAATTACTATAGCAAATCTTATCTCACTAAAGTTGCAGTGGAGCAAG
64 TGCAGTGGATC-GAATCGAAGTTAC-ATAGCAAATCTTATCTC-CTGAAGTTGCAGTGGAGCAAG
* * ** *
81358549 ATAAAGCTATGAATCCTATATCCTTGAAGATTGAATGGATCGGATCAAAGTTAAAATAT
126 ATGAAGCTA-GAATCCTATATCCTTAAAGATACAATGGATCGGATCAAAGCTAAAATAT
* * *
81358608 CAAATCTTATCTCTCTGAAGTTGTAGCGGAGCAAGATGAAGCTAAATCCTATATCCCTGAAGATG
1 CAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAAGATGAAGCTAAATCCTATATCCTTGAAGATG
* * * *
81358673 CAGTGGATCGGATCGAAGTTA-GTACCAAATCTTATCTCCTTGAAGTTGCAATGGAGCAAGATGA
66 CAGTGGATCGAATCGAAGTTACATAGCAAATCTTATCTCC-TGAAGTTGCAGTGGAGCAAGATGA
* * *
81358737 AGTCGTA-AATCCTATAT-CTCTAAAGATACAGTGGATCGGATCAATGCTATAATAT
130 AG-C-TAGAATCCTATATCCT-TAAAGATACAATGGATCGGATCAAAGCTAAAATAT
* * * * * ** *
81358792 CAAATATTATCTCCCTAAAGTTGTATTAGAGTAAGATGAAGCTACAAATATTATAACCTTGAAGA
1 CAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAAGATGAAGCT--AAATCCTATATCCTTGAAGA
* * * ** * *
81358857 TGCAGTGGATTGTATCGAAGCTACCATAGTGAATCTTATCTCCATGAAGTTGCAGTAGAGCAAAA
64 TGCAGTGGATCGAATCGAAGTTA-CATAGCAAATCTTATCTCC-TGAAGTTGCAGTGGAGCAAGA
* *
81358922 TGAAGCTACAAATCCTATACCCTT
127 TGAAGCTA-GAATCCTATATCCTT
81358946 GAAGTTGCAG
Statistics
Matches: 279, Mismatches: 47, Indels: 24
0.80 0.13 0.07
Matches are distributed among these distances:
183 3 0.01
184 112 0.40
185 4 0.01
186 72 0.26
187 1 0.00
188 85 0.30
189 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (183 bp):
CAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAAGATGAAGCTAAATCCTATATCCTTGAAGATG
CAGTGGATCGAATCGAAGTTACATAGCAAATCTTATCTCCTGAAGTTGCAGTGGAGCAAGATGAA
GCTAGAATCCTATATCCTTAAAGATACAATGGATCGGATCAAAGCTAAAATAT
Found at i:81358854 original size:278 final size:280
Alignment explanation
Indices: 81358300--81358956 Score: 632
Period size: 278 Copynumber: 2.3 Consensus size: 280
81358290 GTATTACAAT
* * * *
81358300 AATGGATTGGATCAAAGTTGAAATGGCAAATCTAATCTCCCTAAAGTTGTAGTGGAGCAAGATGA
1 AATGGATCGGATCAAAGTTAAAATAGCAAATCTAATCTCCCTAAAGTTGTAGCGGAGCAAGATGA
* * * *
81358365 AGCTAAAAATCCTATCTCCCTGAAGTTGCAGTGGGTCAGAATAAAATTACTATTGCAAATCTTAT
66 AGCT-AAAATCCTATATCCCTGAAGATGCAGTGGATCAGAATAAAATTACTA-TCCAAATCTTAT
* * * * * *
81358430 CTCCCTGAAGTTACAGTGGAGCAAGATGAAGCTATAAATCCTATATCTTTGAGGTTGAAGTGGGT
129 CTCCCTGAAGTTACAATGGAGCAAGATGAAGCTATAAATCCTATATCTCTAAAGATGAAGTGGAT
* * **
81358495 CAGAATGAAATTACTATAGCAAATCTTATCTCACTAAAGTTGCAGTGGAGCAAGATAAAGCTATG
194 CAGAATGAAATTACTATAGCAAATATTATCTCACTAAAGTTGCAGTAGAGCAAGATAAAGCTACA
* *
81358560 AATCCTATATCCTTGAAGATTG
259 AATACTATAACCTTGAAGATTG
* * * *
81358582 AATGGATCGGATCAAAGTTAAAATATCAAATCTTATCTCTCTGAAGTTGTAGCGGAGCAAGATGA
1 AATGGATCGGATCAAAGTTAAAATAGCAAATCTAATCTCCCTAAAGTTGTAGCGGAGCAAGATGA
* * * *
81358647 AGCT-AAATCCTATATCCCTGAAGATGCAGTGGATC-GGATCGAAGTTAGTA-CCAAATCTTATC
66 AGCTAAAATCCTATATCCCTGAAGATGCAGTGGATCAGAAT-AAAATTACTATCCAAATCTTATC
* * *
81358709 TCCTTGAAGTTGCAATGGAGCAAGATGAAG-TCGTAAATCCTATATCTCTAAAGAT-ACAGTGGA
130 TCCCTGAAGTTACAATGGAGCAAGATGAAGCT-ATAAATCCTATATCTCTAAAGATGA-AGTGGA
* * * * * * * *
81358772 TC-GGAT-CAATGCTA-TAATATCAAATATTATCTCCCTAAAGTTGTATTAGAGTAAGATGAAGC
193 TCAGAATGAAAT--TACT-ATAGCAAATATTATCTCACTAAAGTTGCAGTAGAGCAAGATAAAGC
*
81358834 TACAAATATTATAACCTTGAAGA-TG
255 TACAAATACTATAACCTTGAAGATTG
* * * * * ** ** * * * * ** *
81358859 CAGTGGATTGTATCGAAGCTACCATAGTGAATCTTATCTCCATGAAGTTGCAGTAGAGCAAAATG
1 -AATGGATCGGATCAAAGTTAAAATAGCAAATCTAATCTCCCTAAAGTTGTAGCGGAGCAAGATG
*
81358924 AAGCTACAAATCCTATA-CCCTTGAAGTTGCAGT
65 AAGCTA-AAATCCTATATCCC-TGAAGATGCAGT
81358957 AGGTTGGAAT
Statistics
Matches: 308, Mismatches: 57, Indels: 22
0.80 0.15 0.06
Matches are distributed among these distances:
276 3 0.01
277 8 0.03
278 174 0.56
279 6 0.02
280 56 0.18
282 61 0.20
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (280 bp):
AATGGATCGGATCAAAGTTAAAATAGCAAATCTAATCTCCCTAAAGTTGTAGCGGAGCAAGATGA
AGCTAAAATCCTATATCCCTGAAGATGCAGTGGATCAGAATAAAATTACTATCCAAATCTTATCT
CCCTGAAGTTACAATGGAGCAAGATGAAGCTATAAATCCTATATCTCTAAAGATGAAGTGGATCA
GAATGAAATTACTATAGCAAATATTATCTCACTAAAGTTGCAGTAGAGCAAGATAAAGCTACAAA
TACTATAACCTTGAAGATTG
Found at i:81368602 original size:56 final size:56
Alignment explanation
Indices: 81368537--81368656 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
81368527 ACAAGGGATG
81368537 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
81368593 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
81368649 ATGGGCAA
1 ATGGGCAA
81368657 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:81369884 original size:39 final size:40
Alignment explanation
Indices: 81369779--81370047 Score: 316
Period size: 40 Copynumber: 6.8 Consensus size: 40
81369769 GTTATTCGAA
* *
81369779 TAATGTCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC
1 TAAT-TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTAC
* * * *
81369820 CATATT-AGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC
1 TA-ATTCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTAC
*
81369860 TAATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTAC
1 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
* * *
81369899 TAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATAC
1 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
*
81369939 TAATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTAC
1 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
* *
81369978 TAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTAC
1 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
* *
81370018 T-ATAACCGGGCTATGTCCCGAAGGCATTTG
1 TAAT-TCCGGGCTAAGTCCCGAAGGCATTTG
81370048 AACGAGTAGC
Statistics
Matches: 194, Mismatches: 26, Indels: 17
0.82 0.11 0.07
Matches are distributed among these distances:
39 73 0.38
40 109 0.56
41 10 0.05
42 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
Found at i:81370080 original size:79 final size:79
Alignment explanation
Indices: 81369837--81370045 Score: 366
Period size: 79 Copynumber: 2.6 Consensus size: 79
81369827 GGACTAAGAT
81369837 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
81369902 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
81369916 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
81369981 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
81369995 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 CCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCATT
81370046 TGAACGAGTA
Statistics
Matches: 125, Mismatches: 3, Indels: 3
0.95 0.02 0.02
Matches are distributed among these distances:
78 2 0.02
79 111 0.89
80 12 0.10
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:81371860 original size:17 final size:17
Alignment explanation
Indices: 81371838--81371879 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
81371828 GGAGAAGAGG
81371838 AAAAT-AAGTACAACAAA
1 AAAATAAAGTACAA-AAA
*
81371855 AAAATAAAGTTC-AAAA
1 AAAATAAAGTACAAAAA
81371871 AAAATAAAG
1 AAAATAAAG
81371880 GTAGTCGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 12 0.52
17 6 0.26
18 5 0.22
ACGTcount: A:0.71, C:0.07, G:0.07, T:0.14
Consensus pattern (17 bp):
AAAATAAAGTACAAAAA
Found at i:81391260 original size:14 final size:14
Alignment explanation
Indices: 81391222--81391252 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
81391212 TTCAAAAAAA
*
81391222 AAATCATTTTCTAG
1 AAATCATTTTCCAG
81391236 AAATCATTTTCCAG
1 AAATCATTTTCCAG
81391250 AAA
1 AAA
81391253 CTATTTTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.42, C:0.16, G:0.06, T:0.35
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:81391908 original size:28 final size:29
Alignment explanation
Indices: 81391855--81391923 Score: 104
Period size: 28 Copynumber: 2.4 Consensus size: 29
81391845 TGACTTGTTT
* * *
81391855 TCTCATTTTCTCCCAACCTCTTTTTCTTC
1 TCTCATTTTCTCCAAACATCATTTTCTTC
81391884 TCTCATTTTCTCCAAACAT-ATTTTCTTC
1 TCTCATTTTCTCCAAACATCATTTTCTTC
81391912 TCTCATTTTCTC
1 TCTCATTTTCTC
81391924 TCAATCACAT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
28 20 0.54
29 17 0.46
ACGTcount: A:0.14, C:0.33, G:0.00, T:0.52
Consensus pattern (29 bp):
TCTCATTTTCTCCAAACATCATTTTCTTC
Found at i:81395332 original size:30 final size:30
Alignment explanation
Indices: 81395298--81395365 Score: 73
Period size: 30 Copynumber: 2.3 Consensus size: 30
81395288 CATAATTTAT
* *
81395298 ACTTTAAAAAAATGACCATTTTGCCCCTAG
1 ACTTTAAAAAAATGACAATTTTACCCCTAG
* * * *
81395328 ACTTTCACAAATTTACAATTTTACCCCTAG
1 ACTTTAAAAAAATGACAATTTTACCCCTAG
*
81395358 GCTTTAAA
1 ACTTTAAA
81395366 TCAATTTTTA
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.35, C:0.24, G:0.07, T:0.34
Consensus pattern (30 bp):
ACTTTAAAAAAATGACAATTTTACCCCTAG
Found at i:81397109 original size:94 final size:92
Alignment explanation
Indices: 81396992--81397163 Score: 213
Period size: 94 Copynumber: 1.8 Consensus size: 92
81396982 ATCTCGTAGC
* * * ** * *
81396992 CGATGCATGTCCCAGGCATGTCTTATACTGGCT-TACGTCCCGA-GGTTGATGCATGTCCCAGAT
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CAT-AAGATGGCTGATGCATGTCCCAGAC
81397055 ATATCTTACACTAGCACTCGTCTCAATGT
64 ATATCTTACACTAGCACTCGTCTCAATGT
* *
81397084 CGATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCATAATATGGCTGATGCATGTCCCAGAC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAAGATGGCTGATGCATGTCCCAGAC
81397149 ATATCTTACACTAGC
64 ATATCTTACACTAGC
81397164 TCACACAAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
92 5 0.07
93 13 0.19
94 48 0.72
95 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (92 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAAGATGGCTGATGCATGTCCCAGACAT
ATCTTACACTAGCACTCGTCTCAATGT
Found at i:81404696 original size:50 final size:52
Alignment explanation
Indices: 81404576--81404708 Score: 168
Period size: 49 Copynumber: 2.7 Consensus size: 52
81404566 ATGGGTAAAG
* * * **
81404576 TACCGATGCCATGTCCCAAACATGGTCTTACACTGGCTATCATCTTCGAGGC
1 TACCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGACCC
*
81404628 T---GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-CAT-GACCC
1 TACCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGACCC
*
81404675 TACCGATGCCATGTCCTAGACATGGTCTTACACT
1 TACCGATGCCATGTCCCAGACATGGTCTTACACT
81404709 GACACATCTC
Statistics
Matches: 71, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
47 4 0.06
48 2 0.03
49 35 0.49
50 29 0.41
52 1 0.01
ACGTcount: A:0.23, C:0.32, G:0.18, T:0.27
Consensus pattern (52 bp):
TACCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGACCC
Found at i:81404839 original size:138 final size:143
Alignment explanation
Indices: 81404585--81404847 Score: 358
Period size: 138 Copynumber: 1.9 Consensus size: 143
81404575 GTACCGATGC
* *
81404585 CATGTCCCAAACATGGTCTTACACTGGCTATCATCTTCGAGGCTGATGCCATGTCCCAGACATGG
1 CATGTCCCAAACATGGTCTTACAATGGCTATCATCTCCGAGGCTGATGCCATGTCCCAGACATGG
* ** * *
81404650 TCTTACACTAGCTCTCACATGACCCTACCGATGCCATGTCCTAGACATGGTCTTACACTGACACA
66 TCTTACACTAGCACTCACAT-ACAATACCGATACCATGTCCCAGACATGGTCTTACACTGACACA
81404715 TCTCATGGCCAATG
130 TCTCATGGCCAATG
* * *
81404729 CATGTCCCAAACAT-GTCTTATAATGGCT-TACGTC-CCGAGGCTGATG-CATGTCCCAGATAT-
1 CATGTCCCAAACATGGTCTTACAATGGCTAT-CATCTCCGAGGCTGATGCCATGTCCCAGACATG
* *
81404789 GTCTTACACTAGCACTCATAT-CAATACCGATACTATGTCCCAGACATGGTCTTACACTG
65 GTCTTACACTAGCACTCACATACAATACCGATACCATGTCCCAGACATGGTCTTACACTG
81404848 GCTCTTATAA
Statistics
Matches: 106, Mismatches: 12, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
138 33 0.31
140 19 0.18
141 13 0.12
142 12 0.11
143 15 0.14
144 14 0.13
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.27
Consensus pattern (143 bp):
CATGTCCCAAACATGGTCTTACAATGGCTATCATCTCCGAGGCTGATGCCATGTCCCAGACATGG
TCTTACACTAGCACTCACATACAATACCGATACCATGTCCCAGACATGGTCTTACACTGACACAT
CTCATGGCCAATG
Found at i:81404884 original size:140 final size:141
Alignment explanation
Indices: 81404585--81404888 Score: 346
Period size: 140 Copynumber: 2.1 Consensus size: 141
81404575 GTACCGATGC
* * * *
81404585 CATGTCCCAAACATGGTCTTACACTGGC-TATCATCTTCGAGGCTGATGCCATGTCCCAGACATG
1 CATGTCCCAAACAT-GTCTTATAATGGCTTA-CGTC-CCGAGGCTGATGCCATGTCCCAGACATG
* ** * *
81404649 GTCTTACACTAGCTCTCACATGACCCTACCGATGCCATGTCCTAGACATGGTCTTACACTGACAC
63 GTCTTACACTAGCACTCACAT-ACAATACCGATACCATGTCCCAGACATGGTCTTACACTGACAC
* *
81404714 ATCTCATGGCCAATG
127 ATATAATGGCCAATG
*
81404729 CATGTCCCAAACATGTCTTATAATGGCTTACGTCCCGAGGCTGATG-CATGTCCCAGATAT-GTC
1 CATGTCCCAAACATGTCTTATAATGGCTTACGTCCCGAGGCTGATGCCATGTCCCAGACATGGTC
* * * * *
81404792 TTACACTAGCACTCATAT-CAATACCGATACTATGTCCCAGACATGGTCTTACACTGGCTCTTAT
66 TTACACTAGCACTCACATACAATACCGATACCATGTCCCAGACATGGTCTTACACTGACACATAT
* *
81404856 AATGTGGTCGATG
131 AA--TGGCCAATG
*
81404869 CATGTCCCAGACATGTCTTA
1 CATGTCCCAAACATGTCTTA
81404889 CACTAGCTCA
Statistics
Matches: 137, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
138 38 0.28
140 45 0.33
141 13 0.09
142 11 0.08
143 14 0.10
144 16 0.12
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (141 bp):
CATGTCCCAAACATGTCTTATAATGGCTTACGTCCCGAGGCTGATGCCATGTCCCAGACATGGTC
TTACACTAGCACTCACATACAATACCGATACCATGTCCCAGACATGGTCTTACACTGACACATAT
AATGGCCAATG
Found at i:81412158 original size:18 final size:18
Alignment explanation
Indices: 81412135--81412179 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
81412125 ATGGTTATAT
81412135 ACTAGGGTTAGGTGGCAC
1 ACTAGGGTTAGGTGGCAC
* *
81412153 ACTAGGGTTGGGTTGCAC
1 ACTAGGGTTAGGTGGCAC
81412171 ACTAGGGTT
1 ACTAGGGTT
81412180 TTCTACACTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.20, C:0.16, G:0.38, T:0.27
Consensus pattern (18 bp):
ACTAGGGTTAGGTGGCAC
Found at i:81425428 original size:93 final size:93
Alignment explanation
Indices: 81425269--81426184 Score: 1753
Period size: 93 Copynumber: 9.8 Consensus size: 93
81425259 GGATGATTGA
*
81425269 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
*
81425334 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCTGAGTTCGTGAGATGTAACTAG
*
81425362 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
81425427 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCTGAGTTCGTGAGATGTAACTAG
81425455 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
81425520 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCTGAGTTCGTGAGATGTAACTAG
81425548 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
81425613 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCTGAGTTCGTGAGATGTAACTAG
81425641 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
81425706 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCTGAGTTCGTGAGATGTAACTAG
81425734 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
81425799 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCTGAGTTCGTGAGATGTAACTAG
81425827 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
81425892 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCTGAGTTCGTGAGATGTAACTAG
81425920 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
81425985 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCTGAGTTCGTGAGATGTAACTAG
81426013 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
*
81426078 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCTGAGTTCGTGAGATGTAACTAG
* *
81426106 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-CCTGAGCTCGTTGAG
1 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC-GAACTCGTTGAG
*
81426170 TTGAGTCCGAGTTCG
65 TTGAGTCTGAGTTCG
81426185 CTTATGGGCG
Statistics
Matches: 817, Mismatches: 5, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
92 2 0.00
93 815 1.00
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (93 bp):
GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCTGAGTTCGTGAGATGTAACTAG
Found at i:81431612 original size:41 final size:41
Alignment explanation
Indices: 81431555--81431770 Score: 299
Period size: 41 Copynumber: 5.3 Consensus size: 41
81431545 AGACCTTTCG
* ** *
81431555 GGGCTTTAGTGGCGTTTTTAAAAAAGCGCTGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
* * *
81431596 GGGCTTTAGCGACGTTTTTGTG-GAAGTGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTG-GAAAAGCGCCGCTAATGCTCA
81431637 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
*
81431678 GGTCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
* ** **
81431719 AGGCTTTAGCAACGTTTTTGGGGAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
81431760 GGGCTTTAGCG
1 GGGCTTTAGCG
81431771 TTTTTAAAAA
Statistics
Matches: 154, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
40 1 0.01
41 153 0.99
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (41 bp):
GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
Found at i:81432108 original size:14 final size:14
Alignment explanation
Indices: 81432091--81432127 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
81432081 GGGTTTAATA
81432091 TATATGGTTTAGGG
1 TATATGGTTTAGGG
*
81432105 TATATGGTTTGGGG
1 TATATGGTTTAGGG
81432119 TATATGGTT
1 TATATGGTT
81432128 AATTTAGGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.46
Consensus pattern (14 bp):
TATATGGTTTAGGG
Found at i:81432359 original size:61 final size:62
Alignment explanation
Indices: 81432288--81432417 Score: 208
Period size: 61 Copynumber: 2.1 Consensus size: 62
81432278 TTCGGTGTTA
* * *
81432288 GGTTAAGGTTTATGGTTTAGATTAATTAGTGTATTTTAATTT-ATATTAAATAAGGTTTATG
1 GGTTAGGGTTTAGGGTTTAGATTAATTAGTGTATTTTAATTTAATATTAAATAAGGTTTAGG
*
81432349 GGTTAGGGTTTAGGGTTTAGATTAATTAGTGTTTTTTAATTTACATATTAAATAAGGTTTAGG
1 GGTTAGGGTTTAGGGTTTAGATTAATTAGTGTATTTTAATTTA-ATATTAAATAAGGTTTAGG
81432412 GGTTAG
1 GGTTAG
81432418 TAGTTAGGGG
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
61 39 0.62
63 24 0.38
ACGTcount: A:0.29, C:0.01, G:0.23, T:0.47
Consensus pattern (62 bp):
GGTTAGGGTTTAGGGTTTAGATTAATTAGTGTATTTTAATTTAATATTAAATAAGGTTTAGG
Found at i:81432425 original size:63 final size:61
Alignment explanation
Indices: 81432295--81432432 Score: 197
Period size: 63 Copynumber: 2.2 Consensus size: 61
81432285 TTAGGTTAAG
* * *
81432295 GTTTATGGTTTAGATTAATTAGTGTATTTTAATTTATATTAAATAAGGTTTATGGGTTAGG
1 GTTTAGGGTTTAGATTAATTAGTGTATTTTAATTTATATTAAATAAGGTTTAGGGGTTAGA
*
81432356 GTTTAGGGTTTAGATTAATTAGTGTTTTTTAATTTACATATTAAATAAGGTTTAGGGGTTAGTA
1 GTTTAGGGTTTAGATTAATTAGTGTATTTTAATTT--ATATTAAATAAGGTTTAGGGGTTAG-A
*
81432420 G-TTAGGGGTTAGA
1 GTTTAGGGTTTAGA
81432433 GGTTAGAGGT
Statistics
Matches: 69, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
61 33 0.48
63 35 0.51
64 1 0.01
ACGTcount: A:0.29, C:0.01, G:0.24, T:0.46
Consensus pattern (61 bp):
GTTTAGGGTTTAGATTAATTAGTGTATTTTAATTTATATTAAATAAGGTTTAGGGGTTAGA
Found at i:81434428 original size:43 final size:43
Alignment explanation
Indices: 81434364--81434591 Score: 280
Period size: 43 Copynumber: 5.3 Consensus size: 43
81434354 TTTAGTAGAC
* * *
81434364 CTTTAGCGGCGTTTGTAGGAAAAGCGTCGCTAAAGGTCTTGTT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGT
* * * *
81434407 CTTTAGCGGCATTT-TAGGGAAAAGCGTCGCTAAATGTCTTGTT
1 CTTTAGCGGCGTTTGT-GGGAAAAGCGCCGCTAAAGGTCTTGGT
* ***
81434450 CTTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAGGTCCAAGT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGT
* * * *
81434493 CTTTAGCGGCGTTTCT-GGAAAAGCGCTGCTAAAAGTCCTGGT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGT
* *
81434535 CTTTAGCGGCGTTTGTGCGATAAGCGCCGCTAAAGGTCTTGGT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGT
81434578 CTTTAGCGGCGTTT
1 CTTTAGCGGCGTTT
81434592 TTTTAAAGGC
Statistics
Matches: 161, Mismatches: 21, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
42 38 0.24
43 122 0.76
44 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.29, T:0.31
Consensus pattern (43 bp):
CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGT
Found at i:81434609 original size:85 final size:84
Alignment explanation
Indices: 81434364--81434610 Score: 296
Period size: 85 Copynumber: 2.9 Consensus size: 84
81434354 TTTAGTAGAC
* * * *
81434364 CTTTAGCGGCGTTTGTAGGAAAAGCGTCGCTAAAGGTCTTGTTCTTTAGCGGCATTTTAGGGAAA
1 CTTTAGCGGCGTTTGT-GGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTT-TGGAAA
* * * *
81434429 AGCGTCGCTAAATGTCTTGTT
64 AGCGCCGCTAAAAGTCCTGGT
* *** *
81434450 CTTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAGGTCCAAGTCTTTAGCGGCGTTTCTGGAAAA
1 CTTTAGCGGCGTTTGT-GGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTTTGGAAAA
*
81434515 GCGCTGCTAAAAGTCCTGGT
65 GCGCCGCTAAAAGTCCTGGT
* ** *
81434535 CTTTAGCGGCGTTTGTGCGATAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTTTTTAAAG
1 CTTTAGCGGCGTTTGTG-GAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTTTGGAAAA
81434600 GCGCCGCTAAA
65 GCGCCGCTAAA
81434611 GTTAGCGACG
Statistics
Matches: 135, Mismatches: 25, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
84 1 0.01
85 85 0.63
86 49 0.36
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (84 bp):
CTTTAGCGGCGTTTGTGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTTTGGAAAAG
CGCCGCTAAAAGTCCTGGT
Found at i:81436142 original size:23 final size:23
Alignment explanation
Indices: 81436098--81436142 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
81436088 ACGTTTGAAA
* *
81436098 TAAAATTAATAATTTCATAGATT
1 TAAAAATAATAATTTAATAGATT
81436121 TAAAAATAATAA-TTAATCAGAT
1 TAAAAATAATAATTTAAT-AGAT
81436143 AAATTTTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.38
Consensus pattern (23 bp):
TAAAAATAATAATTTAATAGATT
Found at i:81437679 original size:126 final size:125
Alignment explanation
Indices: 81437452--81437694 Score: 423
Period size: 126 Copynumber: 1.9 Consensus size: 125
81437442 CATTGATCTT
* *
81437452 CTCTCAAAATTTTTCAAAATAAAGGAATGTTCGGTATTCAAAGAATTCGAAGAGTCGTGCCCTAA
1 CTCTCAAAAATTTTCAAAATAAAGGAATGTTCGGTATTCAAAGAATTCGAAGAATCGTGCCCTAA
*
81437517 CGTACTAGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
66 CGTACTAGGTTTCGCTTTCTTTGTTTGTCTTAAATATTCGAATATCCTCTTACCAGTTCA
*
81437577 CTCTCAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTA
1 CTCTCAAAAATTTTCAAAATAAAGG-AATGTTCGGTATTCAAAGAATTCGAAGAATCGTGCCCTA
* *
81437642 ACGTACTGGGTTTCGCTTTCTTTGTTTGTTTTAAATATTCGAATATCCTCTTA
65 ACGTACTAGGTTTCGCTTTCTTTGTTTGTCTTAAATATTCGAATATCCTCTTA
81437695 AGGCTAAAAC
Statistics
Matches: 111, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
125 24 0.22
126 87 0.78
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (125 bp):
CTCTCAAAAATTTTCAAAATAAAGGAATGTTCGGTATTCAAAGAATTCGAAGAATCGTGCCCTAA
CGTACTAGGTTTCGCTTTCTTTGTTTGTCTTAAATATTCGAATATCCTCTTACCAGTTCA
Found at i:81441219 original size:21 final size:21
Alignment explanation
Indices: 81441189--81441233 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
81441179 GATGGATCAA
*
81441189 ATGCTAGAGTCCTAGAGA-AAC
1 ATGCTAGAGTCATAGA-ACAAC
*
81441210 ATGCTGGAGTCATAGAACAAC
1 ATGCTAGAGTCATAGAACAAC
81441231 ATG
1 ATG
81441234 ATGAGCCAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 20 0.95
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.20
Consensus pattern (21 bp):
ATGCTAGAGTCATAGAACAAC
Found at i:81443784 original size:5 final size:5
Alignment explanation
Indices: 81443761--81443832 Score: 51
Period size: 5 Copynumber: 14.0 Consensus size: 5
81443751 AAAAAATAGA
* *
81443761 AAAAG CAAAG AGAAA- AAAAG AAAAGG AAAAAG AAGAG AAAA- ACAAA-
1 AAAAG AAAAG A-AAAG AAAAG AAAA-G -AAAAG AAAAG AAAAG A-AAAG
*
81443807 AAAAG AGAAAG AAAAG AAAAG CAAAG
1 AAAAG A-AAAG AAAAG AAAAG AAAAG
81443833 GAGAGGCCAA
Statistics
Matches: 55, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
4 7 0.13
5 34 0.62
6 10 0.18
7 4 0.07
ACGTcount: A:0.75, C:0.04, G:0.21, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:81443789 original size:27 final size:27
Alignment explanation
Indices: 81443750--81443816 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 27
81443740 TTCACTTTCA
*
81443750 AAAAAAATAGAAAAAGCAAAGAGAAAAA-
1 AAAAAAAGAGAAAAAG--AAGAGAAAAAC
*
81443778 AAGAAAAG-GAAAAAGAAGAGAAAAAC
1 AAAAAAAGAGAAAAAGAAGAGAAAAAC
81443804 AAAAAAAGAGAAA
1 AAAAAAAGAGAAA
81443817 GAAAAGAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
25 10 0.29
26 7 0.21
27 11 0.32
28 6 0.18
ACGTcount: A:0.78, C:0.03, G:0.18, T:0.01
Consensus pattern (27 bp):
AAAAAAAGAGAAAAAGAAGAGAAAAAC
Found at i:81443796 original size:25 final size:25
Alignment explanation
Indices: 81443751--81443831 Score: 83
Period size: 25 Copynumber: 3.1 Consensus size: 25
81443741 TCACTTTCAA
81443751 AAAAAATAGAAAAAGCAAAGAGAAAAA-
1 AAAAAA-AGAAAAAG--AAGAGAAAAAC
*
81443778 AAGAAAAGGAAAAAGAAGAGAAAAAC
1 AA-AAAAAGAAAAAGAAGAGAAAAAC
* * *
81443804 AAAAAAAGAGAAAGAAAAGAAAAGC
1 AAAAAAAGAAAAAGAAGAGAAAAAC
81443829 AAA
1 AAA
81443832 GGAGAGGCCA
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
25 32 0.68
26 2 0.04
27 9 0.19
28 4 0.09
ACGTcount: A:0.77, C:0.04, G:0.19, T:0.01
Consensus pattern (25 bp):
AAAAAAAGAAAAAGAAGAGAAAAAC
Found at i:81443812 original size:16 final size:16
Alignment explanation
Indices: 81443773--81443816 Score: 54
Period size: 17 Copynumber: 2.8 Consensus size: 16
81443763 AAGCAAAGAG
**
81443773 AAAAAA-AGAAAAGGA
1 AAAAAAGAGAAAAACA
81443788 AAAAGAAGAGAAAAACA
1 AAAA-AAGAGAAAAACA
81443805 AAAAAAGAGAAA
1 AAAAAAGAGAAA
81443817 GAAAAGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 4 0.16
16 10 0.40
17 11 0.44
ACGTcount: A:0.80, C:0.02, G:0.18, T:0.00
Consensus pattern (16 bp):
AAAAAAGAGAAAAACA
Found at i:81443832 original size:10 final size:11
Alignment explanation
Indices: 81443762--81443832 Score: 55
Period size: 11 Copynumber: 6.8 Consensus size: 11
81443752 AAAAATAGAA
*
81443762 AAAGCAAAGAG
1 AAAGAAAAGAG
81443773 AAA-AAAAGA-
1 AAAGAAAAGAG
81443782 AAAGGAAAA-AG
1 AAA-GAAAAGAG
*
81443793 AAGAGAAAA-AC
1 AA-AGAAAAGAG
81443804 AAA-AAAAGAG
1 AAAGAAAAGAG
81443814 AAAGAAAAGA-
1 AAAGAAAAGAG
*
81443824 AAAGCAAAG
1 AAAGAAAAG
81443833 GAGAGGCCAA
Statistics
Matches: 50, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
9 7 0.14
10 19 0.38
11 23 0.46
12 1 0.02
ACGTcount: A:0.75, C:0.04, G:0.21, T:0.00
Consensus pattern (11 bp):
AAAGAAAAGAG
Found at i:81457525 original size:11 final size:11
Alignment explanation
Indices: 81457509--81457547 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
81457499 AGGATTTCGG
81457509 AGAGGATTTTT
1 AGAGGATTTTT
81457520 AGAGGATTTTT
1 AGAGGATTTTT
*
81457531 GGAGGAATTTTTT
1 AGAGG-A-TTTTT
81457544 AGAG
1 AGAG
81457548 AATACACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 15 0.62
12 1 0.04
13 8 0.33
ACGTcount: A:0.28, C:0.00, G:0.31, T:0.41
Consensus pattern (11 bp):
AGAGGATTTTT
Found at i:81457534 original size:24 final size:23
Alignment explanation
Indices: 81457498--81457547 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
81457488 GGATTTTGGG
*
81457498 GAGGATTTCGGAGAGGA-TTTTTA
1 GAGGATTTCGGAG-GAATTTTTTA
*
81457521 GAGGATTTTTGGAGGAATTTTTTA
1 GAGGA-TTTCGGAGGAATTTTTTA
81457545 GAG
1 GAG
81457548 AATACACATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 7 0.30
24 16 0.70
ACGTcount: A:0.26, C:0.02, G:0.34, T:0.38
Consensus pattern (23 bp):
GAGGATTTCGGAGGAATTTTTTA
Found at i:81457879 original size:19 final size:18
Alignment explanation
Indices: 81457855--81457891 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
81457845 TTATGTTTCA
81457855 TATTATTATATTATTTATT
1 TATTATTATA-TATTTATT
81457874 TATTATTATATATTTATT
1 TATTATTATATATTTATT
81457892 ATGTAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TATTATTATATATTTATT
Found at i:81457903 original size:17 final size:14
Alignment explanation
Indices: 81457863--81457893 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
81457853 CATATTATTA
*
81457863 TATTATTTATTTAT
1 TATTATATATTTAT
81457877 TATTATATATTTAT
1 TATTATATATTTAT
81457891 TAT
1 TAT
81457894 GTAAATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TATTATATATTTAT
Found at i:81458580 original size:126 final size:125
Alignment explanation
Indices: 81458356--81458598 Score: 432
Period size: 126 Copynumber: 1.9 Consensus size: 125
81458346 CATTGATCTT
* * *
81458356 CTCTCAAAATTTTTCAAAATAAAGGAATGTTCGGTATTCAAAGAATTCGAAGAATCGTGCCCTAA
1 CTCTCAAAAATTTTCAAAACAAAGGAATGTTCGGTATTCAAAGAATTCGAAGAATCATGCCCTAA
81458421 CGTACTAGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
66 CGTACTAGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
*
81458481 CTCTCAAAAATTTTCAAAACAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCATGCCCTA
1 CTCTCAAAAATTTTCAAAACAAAGG-AATGTTCGGTATTCAAAGAATTCGAAGAATCATGCCCTA
*
81458546 ACGTACTAGGTTTCGCTTTCTTTGTTTGTTTTGAATATTCGAATATCCTCTTA
65 ACGTACTAGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTA
81458599 AGGCTAAAAC
Statistics
Matches: 112, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
125 23 0.21
126 89 0.79
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.37
Consensus pattern (125 bp):
CTCTCAAAAATTTTCAAAACAAAGGAATGTTCGGTATTCAAAGAATTCGAAGAATCATGCCCTAA
CGTACTAGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
Found at i:81460194 original size:23 final size:23
Alignment explanation
Indices: 81460174--81460232 Score: 77
Period size: 21 Copynumber: 2.6 Consensus size: 23
81460164 ATGGAATAGT
81460174 ATATAAAAAATATA-AC-TAATA
1 ATATAAAAAATATATACATAATA
*
81460195 ATATTAAAAATATATACATAATA
1 ATATAAAAAATATATACATAATA
*
81460218 CATATAAAACATATA
1 -ATATAAAAAATATA
81460233 CGCTATATAC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 13 0.41
22 2 0.06
23 5 0.16
24 12 0.38
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.31
Consensus pattern (23 bp):
ATATAAAAAATATATACATAATA
Found at i:81461208 original size:11 final size:11
Alignment explanation
Indices: 81461181--81461213 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
81461171 TTAAAATGGG
81461181 GAAAAGGGA-A
1 GAAAAGGGAGA
*
81461191 AAAAAGGGAGA
1 GAAAAGGGAGA
81461202 GAAAAGGGAGA
1 GAAAAGGGAGA
81461213 G
1 G
81461214 GGGGAGGGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
10 8 0.40
11 12 0.60
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (11 bp):
GAAAAGGGAGA
Found at i:81461314 original size:11 final size:11
Alignment explanation
Indices: 81461294--81461329 Score: 58
Period size: 10 Copynumber: 3.5 Consensus size: 11
81461284 AAAAAGGTAA
81461294 TTTTTT-TTAT
1 TTTTTTATTAT
81461304 TTTTTTATTAT
1 TTTTTTATTAT
81461315 TTTTTTA-TAT
1 TTTTTTATTAT
81461325 TTTTT
1 TTTTT
81461330 AATATATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 14 0.56
11 11 0.44
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (11 bp):
TTTTTTATTAT
Found at i:81461797 original size:17 final size:18
Alignment explanation
Indices: 81461754--81461797 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
81461744 TTTGGGTAGC
81461754 TTGGGTTGTTGGGTTAAA
1 TTGGGTTGTTGGGTTAAA
81461772 TTGGGTTGTTGGGTTAAA
1 TTGGGTTGTTGGGTTAAA
81461790 TT-GGTTGT
1 TTGGGTTGT
81461798 ATTGGACGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 6 0.23
18 20 0.77
ACGTcount: A:0.14, C:0.00, G:0.39, T:0.48
Consensus pattern (18 bp):
TTGGGTTGTTGGGTTAAA
Found at i:81462566 original size:88 final size:88
Alignment explanation
Indices: 81462417--81462627 Score: 413
Period size: 88 Copynumber: 2.4 Consensus size: 88
81462407 GTGACTCGGA
81462417 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAACAGAAATTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAACAGAAATTG
81462482 AAAACACCTCAACGTGTCCTGAG
66 AAAACACCTCAACGTGTCCTGAG
81462505 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAACAGAAATTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAACAGAAATTG
81462570 AAAACACCTCAACGTGTCCTGAG
66 AAAACACCTCAACGTGTCCTGAG
*
81462593 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
81462628 TTGAAAAGCA
Statistics
Matches: 122, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
88 122 1.00
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.28
Consensus pattern (88 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAACAGAAATTG
AAAACACCTCAACGTGTCCTGAG
Found at i:81462825 original size:74 final size:75
Alignment explanation
Indices: 81462561--81463004 Score: 578
Period size: 74 Copynumber: 5.9 Consensus size: 75
81462551 ATTGAAAAAA
* * *
81462561 CAGAAATTGAAAACACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTT
1 CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
81462626 TTTTGAAAAGCAGAAG
66 TTTTG---A-C--AAG
* * *
81462642 CAGAAATTGAAAATAACTCAGCATG-CCTTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA--
1 CAGAAATTGAAAATACCTCAGCGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
81462704 TTTTTGACAAA
65 TTTTTGACAAG
* * *
81462715 CAGAAATTGAAATTACCTCAGCGTGTCTTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
81462780 TTTTGA-AAG
66 TTTTGACAAG
*
81462789 CAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--T
1 CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*
81462852 TTTTGACAAA
66 TTTTGACAAG
* * * *
81462862 CAGAAATTGAAATTACCT-TGTGTGTCCTGAGGCTAAACTCACCTCTCGCAATATGAGTTGATTT
1 CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*
81462926 TTTTGAAAAG
66 TTTTGACAAG
* * * * *
81462936 CAAAAAATGGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGAAATATGAGTTGATTT
1 CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
81463001 TTTT
66 TTTT
81463005 AAACAGAAAT
Statistics
Matches: 322, Mismatches: 33, Indels: 22
0.85 0.09 0.06
Matches are distributed among these distances:
72 46 0.14
73 77 0.24
74 84 0.26
75 53 0.16
76 1 0.00
79 6 0.02
80 2 0.01
81 53 0.16
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (75 bp):
CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TTTTGACAAG
Found at i:81462863 original size:147 final size:148
Alignment explanation
Indices: 81462558--81463002 Score: 651
Period size: 147 Copynumber: 3.0 Consensus size: 148
81462548 TAAATTGAAA
** * *
81462558 AAACAGAAATTGAAAACACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAA
1 AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * * *
81462623 TTTTTTTGAAAAGCAGAAGCAGAAATTGAAAATAACTCAGCATGCCTTAAGGCTCAACTCACCTC
66 TTTTTTTG---A--A-AAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTC
81462688 TCGCAATATGAGTTGATTTTTGAC
125 TCGCAATATGAGTTGATTTTTGAC
* *
81462712 AAACAGAAATTGAAATTACCTCAGCGTGTCTTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
81462777 TTTTTTTG-AAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAA
66 TTTTTTTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAA
81462841 TATGAGTTGATTTTTGAC
131 TATGAGTTGATTTTTGAC
* * *
81462859 AAACAGAAATTGAAATTACCT-TGTGTGTCCTGAGGCTAAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * * * * *
81462923 TTTTTTTGAAAAGCAAAAAATGGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGAAA
66 TTTTTTTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAA
81462988 TATGAGTTGATTTTT
131 TATGAGTTGATTTTT
81463003 TTAAACAGAA
Statistics
Matches: 269, Mismatches: 21, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
146 46 0.17
147 155 0.58
148 1 0.00
154 67 0.25
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (148 bp):
AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTTTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAA
TATGAGTTGATTTTTGAC
Found at i:81475072 original size:11 final size:11
Alignment explanation
Indices: 81475056--81475088 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
81475046 GTAATGTTAA
81475056 AATATATACAT
1 AATATATACAT
81475067 AATATATACAT
1 AATATATACAT
81475078 -ATATATA-AT
1 AATATATACAT
81475087 AA
1 AA
81475089 ATTTCGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 2 0.10
10 8 0.38
11 11 0.52
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (11 bp):
AATATATACAT
Found at i:81475237 original size:20 final size:19
Alignment explanation
Indices: 81475214--81475279 Score: 51
Period size: 22 Copynumber: 3.2 Consensus size: 19
81475204 TACGAAAATA
*
81475214 ATACTATATATAAAATATGT
1 ATACTA-ATATAAAATATAT
*
81475234 ATACAAGAATAATAAAATATAT
1 ATAC--TAAT-ATAAAATATAT
*
81475256 ATACTAATATTAATAATAAAT
1 ATACTAATA-TAA-AATATAT
81475277 ATA
1 ATA
81475280 GTAGGAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
19 1 0.03
20 10 0.27
21 11 0.30
22 15 0.41
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.35
Consensus pattern (19 bp):
ATACTAATATAAAATATAT
Found at i:81475429 original size:23 final size:23
Alignment explanation
Indices: 81475409--81475467 Score: 68
Period size: 21 Copynumber: 2.6 Consensus size: 23
81475399 ATGGAATAGT
81475409 ATATAAAAAATATA-AC-TAATA
1 ATATAAAAAATATATACATAATA
**
81475430 ATATTGAAAATATATACATAATA
1 ATATAAAAAATATATACATAATA
*
81475453 CATATAAAACATATA
1 -ATATAAAAAATATA
81475468 CGCTATATAC
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 12 0.40
22 2 0.07
23 5 0.17
24 11 0.37
ACGTcount: A:0.61, C:0.07, G:0.02, T:0.31
Consensus pattern (23 bp):
ATATAAAAAATATATACATAATA
Found at i:81475615 original size:17 final size:18
Alignment explanation
Indices: 81475579--81475621 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
81475569 GAAATACTTA
* *
81475579 ATATATAATATTAGAAAT
1 ATATATAACATTAAAAAT
81475597 ATATATAACA-TAAAAAT
1 ATATATAACATTAAAAAT
81475614 ATATATAA
1 ATATATAA
81475622 TGTAGTATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 14 0.61
18 9 0.39
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (18 bp):
ATATATAACATTAAAAAT
Found at i:81475617 original size:15 final size:17
Alignment explanation
Indices: 81475578--81475618 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
81475568 AGAAATACTT
*
81475578 AATATATAATATTAGAA
1 AATATATAACATTAGAA
81475595 ATATATATAACA-TA-AA
1 A-ATATATAACATTAGAA
81475611 AATATATA
1 AATATATA
81475619 TAATGTAGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 7 0.32
16 3 0.14
17 3 0.14
18 9 0.41
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.34
Consensus pattern (17 bp):
AATATATAACATTAGAA
Found at i:81477169 original size:127 final size:127
Alignment explanation
Indices: 81476720--81477284 Score: 563
Period size: 127 Copynumber: 4.4 Consensus size: 127
81476710 CCCAAACTGT
** ** * * * *
81476720 AAATTGAAACCCAGCACGATTGGGCACGATTTATCGAATTTCCAAATACGAAACATTGCCTCATT
1 AAATTGAAACCCAGCACGATTGGGCACGACCTCCCAAACTTCCAAACACGAAATATTGCCTCATT
* * * * * *
81476785 TTAA-TTTGAGAAAACATGTATGAAATTT-CAAAAGGATATTCTATATTTTAGTCGAATGGA
66 TTAATTTTAAAAAAACATGGACGAAATTTCCAAAAGGATATTCTATATTTTAGCCGAATGAA
* * * * * * *
81476845 AGATTGAAGCCCAACACGATTGGGCACGACTTCCGAAACTTCCAAACATGAAATATTGCCTCGTT
1 AAATTGAAACCCAGCACGATTGGGCACGACCTCCCAAACTTCCAAACACGAAATATTGCCTCATT
* * *
81476910 TT-ATTTTAAGAAAAA-AGTGGATGAAATTTCAAAAAAAGGATATTCTATATTTTAGTCGAATGA
66 TTAATTTTAA-AAAAACA-TGGACGAAATTTC--CAAAAGGATATTCTATATTTTAGCCGAATG-
81476973 AA
126 AA
** * * * *
81476975 AAAACGAAACCCAGCACGATTGGGCA-GATCTCTCAAACTCCCCAAATACGAAATATTGCCTCAT
1 AAATTGAAACCCAGCACGATTGGGCACGACCTCCCAAACT-TCCAAACACGAAATATTGCCTCAT
* *
81477039 TTTAATTTTTAAAAAAACATGGACGAAATTTCCAAAA-GATATT-TCGTATTTTAGCCGAATGGA
65 TTTAA-TTTTAAAAAAACATGGACGAAATTTCCAAAAGGATATTCT-ATATTTTAGCCGAATGAA
* * * * *
81477102 AAATTGAATCCTAGCACGATTGGGCACGACCTCCCAAACTTCCAAACAGGAAGTATTGCCTCGTT
1 AAATTGAAACCCAGCACGATTGGGCACGACCTCCCAAACTTCCAAACACGAAATATTGCCTCATT
* * * * *
81477167 TTAATTTTAAAAAAAACATGGACAAAATTTCC-AAAGGATATTTTGTATTTTAGCTGAACGAA
66 TTAATTTT-AAAAAAACATGGACGAAATTTCCAAAAGGATATTCTATATTTTAGCCGAATGAA
* * * * *
81477229 AAATCGAAACCCAGCACGATTGGGCACGACC-CTCGAACTCCCAAACACAAAATATT
1 AAATTGAAACCCAGCACGATTGGGCACGACCTCCCAAACTTCCAAACACGAAATATT
81477285 TCCTTATATT
Statistics
Matches: 364, Mismatches: 60, Indels: 31
0.80 0.13 0.07
Matches are distributed among these distances:
124 1 0.00
125 59 0.16
126 41 0.11
127 119 0.33
128 32 0.09
129 42 0.12
130 45 0.12
131 18 0.05
132 7 0.02
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (127 bp):
AAATTGAAACCCAGCACGATTGGGCACGACCTCCCAAACTTCCAAACACGAAATATTGCCTCATT
TTAATTTTAAAAAAACATGGACGAAATTTCCAAAAGGATATTCTATATTTTAGCCGAATGAA
Found at i:81479641 original size:45 final size:45
Alignment explanation
Indices: 81479576--81479914 Score: 264
Period size: 45 Copynumber: 7.6 Consensus size: 45
81479566 AGTCTGCTTT
* * *
81479576 CTGCAACTTTAGGAAGATAAGACTTGTTATCTTTAGTCTGCTCCA
1 CTGCAACTTCAGGGAGATAAGACTTGCTATCTTTAGTCTGCTCCA
* *
81479621 CTACAACTTCAGGGAGATAAGACTTACTATCTTTAGTCTGCTCCA
1 CTGCAACTTCAGGGAGATAAGACTTGCTATCTTTAGTCTGCTCCA
* * * *
81479666 CTGCAACTTCAGAGAGACAAGACTTACTATCTTTAGTCTGCTTCA
1 CTGCAACTTCAGGGAGATAAGACTTGCTATCTTTAGTCTGCTCCA
* * ** ** * *
81479711 CTGCAACTTCAGGGAGATAAGGC-TGGTGGCTGAAATCTGTTCCA
1 CTGCAACTTCAGGGAGATAAGACTTGCTATCTTTAGTCTGCTCCA
* * * * * *
81479755 -TAGTCAA-TACATGGAGATAAAACTCGCCAT-TTTAGATCTACTCCA
1 CT-G-CAACTTCAGGGAGATAAGACTTGCTATCTTTAG-TCTGCTCCA
* * * * *
81479800 -TAGCTGA-TACATGGAGATAAGA-TCTG-TAATTTTTAGTCTGCTTC-
1 CT-GC-AACTTCAGGGAGATAAGACT-TGCT-ATCTTTAGTCTGCTCCA
* * * *
81479844 CTGCAACTTCAAGAATATAAGACTTGCTATCTTCAGTCTGCTCCA
1 CTGCAACTTCAGGGAGATAAGACTTGCTATCTTTAGTCTGCTCCA
81479889 CTGCAACTTCAGGGAGATAAGACTTG
1 CTGCAACTTCAGGGAGATAAGACTTG
81479915 TCATTTTCGA
Statistics
Matches: 229, Mismatches: 52, Indels: 26
0.75 0.17 0.08
Matches are distributed among these distances:
43 2 0.01
44 57 0.25
45 165 0.72
46 5 0.02
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (45 bp):
CTGCAACTTCAGGGAGATAAGACTTGCTATCTTTAGTCTGCTCCA
Found at i:81479943 original size:134 final size:134
Alignment explanation
Indices: 81479500--81479953 Score: 417
Period size: 134 Copynumber: 3.4 Consensus size: 134
81479490 GTCGACACAT
* * *
81479500 GGAGATAAGACTCACCATTTCT-GATATGCTCCATAGCAGATACAT-GAGATAAGATCTGTAATT
1 GGAGATAAGACTCGCCATTT-TAGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATT
* * * * * *
81479563 TTCAGTCTGCTTTCTGCAACTTTAGGAAGATAAGACTTGTTATCTTTAGTCTGCTCCACTACAAC
65 TTTAGTCTGCTTCCTGCAACTTCAGGAAGATAAGACTTGCTATCTTAAGTCTGCTCCACTGCAAC
81479628 TTCAG
130 TTCAG
** * * * *
81479633 GGAGATAAGACTTACTATCTTTAG-TCTGCTCCACT-G-CAACTTCA-GAGAGACAAGA-CT-TA
1 GGAGATAAGACTCGCCAT-TTTAGATCTGCTCCA-TAGCCGA-TACATG-GAGATAAGATCTGTA
* * * * ** * * *
81479692 CTATCTTTAGTCTGCTTCACTGCAACTTCAGGGAGATAAGGC-TGGTGGCTGAAATCTGTTCCA-
62 --ATTTTTAGTCTGCTTC-CTGCAACTTCAGGAAGATAAGACTTGCTATCTTAAGTCTGCTCCAC
* *
81479755 TAGTCAA-TACAT
124 T-G-CAACTTCAG
* * *
81479767 GGAGATAAAACTCGCCATTTTAGATCTACTCCATAGCTGATACATGGAGATAAGATCTGTAATTT
1 GGAGATAAGACTCGCCATTTTAGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTT
* * *
81479832 TTAGTCTGCTTCCTGCAACTTCAAGAATATAAGACTTGCTATCTTCAGTCTGCTCCACTGCAACT
66 TTAGTCTGCTTCCTGCAACTTCAGGAAGATAAGACTTGCTATCTTAAGTCTGCTCCACTGCAACT
81479897 TCAG
131 TCAG
* * * *
81479901 GGAGATAAGACTTGTCATTTTCGATCTGCTCTATAGCCGATACATGGAGATAA
1 GGAGATAAGACTCGCCATTTTAGATCTGCTCCATAGCCGATACATGGAGATAA
81479954 AACTCGCTGT
Statistics
Matches: 248, Mismatches: 53, Indels: 39
0.73 0.16 0.11
Matches are distributed among these distances:
132 3 0.01
133 60 0.24
134 155 0.62
135 28 0.11
136 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (134 bp):
GGAGATAAGACTCGCCATTTTAGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTT
TTAGTCTGCTTCCTGCAACTTCAGGAAGATAAGACTTGCTATCTTAAGTCTGCTCCACTGCAACT
TCAG
Found at i:81482929 original size:132 final size:132
Alignment explanation
Indices: 81482718--81483089 Score: 480
Period size: 132 Copynumber: 2.8 Consensus size: 132
81482708 GACGAGATTT
* * *
81482718 GATATTTGGCAATTCGCGGAATCGTGCCCTAACATGCTGGGTTGCAATTTCTAGTTTGCTCAAAA
1 GATATTTGACAATTCGCGGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAA
* *
81482783 TAATCGAATATCCCTTCAAAATTTCACTCATGTCTTCTAAAAATC-CTTTAAAACAAAGGCAACA
66 TAATCGAATATCCCTTTAGAATTTCACTCATGT-TTCTAAAAATCTCTTTAAAACAAAGGCAACA
*
81482847 TTC
130 CTC
81482850 GATATTTGACAATTCGCGGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAA
1 GATATTTGACAATTCGCGGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAA
* * * * * * *
81482915 CAATCGAATGTCCCTTTGGAATTTCATTCATTTTTCTAAAAA-CTCTTTAAAACAAAGGTAATAC
66 TAATCGAATATCCCTTTAGAATTTCACTCATGTTTCTAAAAATCTCTTTAAAACAAAGGCAACAC
81482979 TC
131 TC
** * * * * * *
81482981 GAGGTTTGATAATTCGGGGAATTGTGCCCTATCGTGCTGGGTTGCAATTTC-CTGTTGGTTCAAA
1 GATATTTGACAATTCGCGGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTC-GTTTGCTCAAA
* * *
81483045 ATAATCGAACATCCCCTTTAGAATTTCCCTCATGTTTCTTAAAAT
65 ATAATCGAATAT-CCCTTTAGAATTTCACTCATGTTTCTAAAAAT
81483090 TCTAAAAAAA
Statistics
Matches: 207, Mismatches: 29, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
130 2 0.01
131 91 0.44
132 114 0.55
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (132 bp):
GATATTTGACAATTCGCGGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAA
TAATCGAATATCCCTTTAGAATTTCACTCATGTTTCTAAAAATCTCTTTAAAACAAAGGCAACAC
TC
Found at i:81483017 original size:131 final size:129
Alignment explanation
Indices: 81482728--81483170 Score: 476
Period size: 132 Copynumber: 3.4 Consensus size: 129
81482718 GATATTTGGC
* *
81482728 AATTCGCGGAATCGTGCCCTAACATGCTGGGTTGCAATTTCTAGTTTGCTCAAAATAATCGAATA
1 AATTCGCGGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATA
* * * * * * *
81482793 TCCCTTCAAAATTTCACTCATGTCTTCTAAAAATCCTTTAAAACAAAGGCAACATTCGATATTTG
66 TCCCTTTAGAATTTCACTCAT-TTTTCTAAAAAT-CTTTAAAACAAAGGTAATACTCGATGTTTG
81482858 A
129 A
*
81482859 CAATTCGCGGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAACAATCGAAT
1 -AATTCGCGGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAAT
* * * *
81482924 GTCCCTTTGGAATTTCATTCATTTTTCTAAAAACTCTTTAAAACAAAGGTAATACTCGAGGTTTG
65 ATCCCTTTAGAATTTCACTCATTTTTCTAAAAA-TCTTTAAAACAAAGGTAATACTCGATGTTTG
81482989 A
129 A
* * * * *
81482990 TAATTCGGGGAATTGTGCCCTATCGTGCTGGGTTGCAATTTC-CTGTTGGTTCAAAATAATCGAA
1 -AATTCGCGGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTC-GTTTGCTCAAAATAATCGAA
* * * * ** * *
81483054 CATCCCCTTTAGAATTTCCCTCATGTTTCTTAAAATTCTAAAAAAAATAAGGTAATGCTCGATGT
64 TAT-CCCTTTAGAATTTCACTCATTTTTC-TAAAAATCTTTAAAACA-AAGGTAATACTCGATGT
81483119 TTAGA
126 TT-GA
** * * *
81483124 AATTCGAAGAACCGTGCCCT-ACTGTGCTGGGTTTCGATTTCCTCGTT
1 AATTCGCGGAATCGTGCCCTAAC-GTGCTGGGTTGCAATTT-CTCGTT
81483171 GGACTAAATA
Statistics
Matches: 262, Mismatches: 40, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
130 1 0.00
131 92 0.35
132 109 0.42
133 53 0.20
134 6 0.02
135 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.34
Consensus pattern (129 bp):
AATTCGCGGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATA
TCCCTTTAGAATTTCACTCATTTTTCTAAAAATCTTTAAAACAAAGGTAATACTCGATGTTTGA
Found at i:81483866 original size:45 final size:45
Alignment explanation
Indices: 81483804--81483932 Score: 197
Period size: 45 Copynumber: 2.9 Consensus size: 45
81483794 GATAAGATCT
* *
81483804 TTCAATCTGCTTC-CTGCAACTTCAGGAAGATAAGACTTGCTATC
1 TTCAGTCTGCTCCACTGCAACTTCAGGAAGATAAGACTTGCTATC
* *
81483848 TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTACTATC
1 TTCAGTCTGCTCCACTGCAACTTCAGGAAGATAAGACTTGCTATC
* *
81483893 TTTAGTCTGCTCCACTGCAACTTCGGGAAGATAAGACTTG
1 TTCAGTCTGCTCCACTGCAACTTCAGGAAGATAAGACTTG
81483933 GGGATAAAAT
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
44 11 0.14
45 65 0.86
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (45 bp):
TTCAGTCTGCTCCACTGCAACTTCAGGAAGATAAGACTTGCTATC
Found at i:81484004 original size:134 final size:132
Alignment explanation
Indices: 81483680--81484326 Score: 484
Period size: 134 Copynumber: 4.9 Consensus size: 132
81483670 GCCATTTCTG
* *
81483680 ATCTGCTCCATAGCTGATACATGGAGATAAGATCTGTAAGTTTTCAGTCTGCTCCCTGCAACTTC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAA-TTTTCAGTCTGCTTCCTGCAACTTC
*** * * *
81483745 AGGAAGATAAGACTTGGGGA--TAAAATCTGCTCCA-TAGCCGATACAT--GGAGATAAGA--T-
65 AGGAAGATAAGACTT-ACTATCTTAAGTCTGCTCCACT-G-C-A-ACTTCGGGAGATAAGACTTG
81483802 -C-TT-TCA
125 CCATTAT-A
* * * *
81483808 ATCTGCTTCC-T-G-CAACTTCA-GGAAGATAAGA-CTTGCT-ATCTTCAGTCTGCTCCACTGCA
1 ATCTGC-TCCATAGCCGA-TACATGG-AGATAAGATC-TG-TAATTTTCAGTCTGCTTC-CTGCA
* *
81483867 ACTTCAGGGAGATAAGACTTACTATCTTTAGTCTGCTCCACTGCAACTTCGGGAAGATAAGACTT
60 ACTTCAGGAAGATAAGACTTACTATCTTAAGTCTGCTCCACTGCAACTTCGGG-AGATAAGACTT
** *
81483932 GGGGA-TAAA
124 -GCCATTATA
*
81483941 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAAATTTTCAGTCTGTTTCCTGCAACTTC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGT-AATTTTCAGTCTGCTTCCTGCAACTTC
* ** * * * *
81484006 AGGAAGATAAGAC-TAGTGGCTAAAATCTGCTCCA-TAGCCGATACAT--GGAGATAAGA-TTCA
65 AGGAAGATAAGACTTACTATCTTAAGTCTGCTCCACT-G-C-A-ACTTCGGGAGATAAGACTT-G
* *
81484066 CCATTTCTG
125 CCA-TTATA
* *
81484075 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAACTTTCAGTCTGCTTCCTGTAACTTCA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCA
* * * * * *
81484140 GGAAGATAAGACTTGCTATCTTCAGTTTGCGCCACTGCAACTTCAGGGAGGTAAGACTTGTCATT
66 GGAAGATAAGACTTACTATCTTAAGTCTGCTCCACTGCAACTTC-GGGAGATAAGACTTGCCA-T
* *
81484205 TTTT
129 TATA
*
81484209 ATCTGCTCCATAGCCGATACATGGAAATAAGATCTGTAATTTT-AGTCTGCTTCCTGCAACTTCA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCA
* * * *
81484273 AGAAGATAAGACTT-GTCA-CTTCAA-CCTGCTCCACTGCAGCTTCAGGGAGATAAG
66 GGAAGATAAGACTTACT-ATCTT-AAGTCTGCTCCACTGCAACTTC-GGGAGATAAG
81484327 GTTTGTAATC
Statistics
Matches: 416, Mismatches: 63, Indels: 76
0.75 0.11 0.14
Matches are distributed among these distances:
125 3 0.01
126 20 0.05
127 42 0.10
128 28 0.07
129 4 0.01
130 1 0.00
131 3 0.01
132 37 0.09
133 107 0.26
134 146 0.35
135 22 0.05
136 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (132 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCA
GGAAGATAAGACTTACTATCTTAAGTCTGCTCCACTGCAACTTCGGGAGATAAGACTTGCCATTA
TA
Found at i:81484125 original size:45 final size:45
Alignment explanation
Indices: 81483942--81484126 Score: 143
Period size: 45 Copynumber: 4.1 Consensus size: 45
81483932 GGGGATAAAA
*
81483942 TCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAAATTTTCAG
1 TCTGCTCCATAGCCGATACATGGAGATAAGATCTGT-AACTTTCAG
* * * ** ** *
81483988 TCTGTTTCC-T-G-CAACTTCA-GGAAGATAAGA-CTAGTGGC-TAAAA
1 TCTG-CTCCATAGCCGA-TACATGG-AGATAAGATCT-GTAACTTTCAG
* * *
81484031 TCTGCTCCATAGCCGATACATGGAGATAAGAT-T-CACCATTTCTG
1 TCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAAC-TTTCAG
81484075 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAACTTTCAG
1 -TCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAACTTTCAG
81484121 TCTGCT
1 TCTGCT
81484127 TCCTGTAACT
Statistics
Matches: 103, Mismatches: 22, Indels: 29
0.67 0.14 0.19
Matches are distributed among these distances:
42 4 0.04
43 7 0.07
44 20 0.19
45 56 0.54
46 11 0.11
47 5 0.05
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (45 bp):
TCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAACTTTCAG
Found at i:81484534 original size:64 final size:64
Alignment explanation
Indices: 81484433--81484559 Score: 229
Period size: 64 Copynumber: 2.0 Consensus size: 64
81484423 TCATGTATCT
81484433 ATGCTTATGCCAAATAATTAGGATGCTATGATCAAAAT-AATCCAAGTGCTCCTAACTAGATGTG
1 ATGCTTATGCCAAATAATTAGGATGCTATGATCAAAATGAAT-CAAGTGCTCCTAACTAGATGTG
*
81484497 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAGTGCTCCTAACTAGATGT
1 ATGCTTATGCCAAATAATTAGGATGCTATGATCAAAATGAATCAAGTGCTCCTAACTAGATGT
81484560 ATTATGAATG
Statistics
Matches: 61, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
64 58 0.95
65 3 0.05
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGGATGCTATGATCAAAATGAATCAAGTGCTCCTAACTAGATGTG
Found at i:81493954 original size:20 final size:20
Alignment explanation
Indices: 81493929--81493972 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
81493919 CCCTATAAAT
81493929 CTGCTTTCGCATGCCTTCGC
1 CTGCTTTCGCATGCCTTCGC
81493949 CTGCTTTCGCATGCCTTCGC
1 CTGCTTTCGCATGCCTTCGC
81493969 CTGC
1 CTGC
81493973 CTTCCGACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.05, C:0.41, G:0.20, T:0.34
Consensus pattern (20 bp):
CTGCTTTCGCATGCCTTCGC
Found at i:81493957 original size:10 final size:10
Alignment explanation
Indices: 81493929--81493976 Score: 60
Period size: 10 Copynumber: 4.8 Consensus size: 10
81493919 CCCTATAAAT
*
81493929 CTGCTTTCGC
1 CTGCCTTCGC
*
81493939 ATGCCTTCGC
1 CTGCCTTCGC
*
81493949 CTGCTTTCGC
1 CTGCCTTCGC
*
81493959 ATGCCTTCGC
1 CTGCCTTCGC
81493969 CTGCCTTC
1 CTGCCTTC
81493977 CGACATGCAC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.04, C:0.42, G:0.19, T:0.35
Consensus pattern (10 bp):
CTGCCTTCGC
Done.