Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 245 of 322
Found at i:81496048 original size:127 final size:126
Alignment explanation
Indices: 81495777--81496470 Score: 650
Period size: 127 Copynumber: 5.5 Consensus size: 126
81495767 CCCAAACGGT
* * * ** * * * * * *
81495777 AAATCGAAACCTAGCACGATTGGGCACGATTTATCGAATTTCCAAATACGAAACATTGTCTCATT
1 AAATTGAAACCCAGCACGATTGGGCACGACTTCCCAAACTTCCAAACACGAAATATTGCCTCGTT
* * * *** *
81495842 TTAATTTGAGAAAACAC--GAATGAAATTTCAAAAGGATATTTTGTATTTTAGTCGAATGGA
66 TTAATTTTA-AAAAAACGTGGATGAAATTTCAAAAGGATATTCCATATTTTAGTCGAATAGA
* * * * * *
81495902 AGATTGAAGCCCAGCACGATTAGGCATGACTTCCCAAACTTTCAAACACGAAATATTGTCTCGTT
1 AAATTGAAACCCAGCACGATTGGGCACGACTTCCCAAACTTCCAAACACGAAATATTGCCTCGTT
* *
81495967 TT-ATTTTAAAAACATGTGGATGAAATTTCAAAAAAGGATATTCCATATTTTAGTCGAATAGA
66 TTAATTTTAAAAAAACGTGGATGAAATTTC--AAAAGGATATTCCATATTTTAGTCGAATAGA
* * *
81496029 AAATTGAAGCCCAGCACGATTGGGCACGACTTCCCAAACTTCCAAGCATGAAATATTGCCTCGTT
1 AAATTGAAACCCAGCACGATTGGGCACGACTTCCCAAACTTCCAAACACGAAATATTGCCTCGTT
* *
81496094 TT-ATTTTAAGAAAAACGTGGATGAAATTTCAAAAAAAGGATATTCTATATTTTAGTCGAATGAA
66 TTAATTTTAA-AAAAACGTGGATGAAATTTC---AAAAGGATATTCCATATTTTAGTCGAAT-AG
81496158 A
126 A
* * * * *
81496159 AAAATGAAACCCAGCACGATTGGGCA-GA-TCTCTCAAACTCCCCAAATACGAAATATTGCCTCA
1 AAATTGAAACCCAGCACGATTGGGCACGACT-TCCCAAACT-TCCAAACACGAAATATTGCCTCG
* * * * * * * *
81496222 TTTTAATTTTTAAAAAGACATGGACGAAATTTCCAAAGGATATTTCGTATTTTAGCCGAATGGA
64 TTTTAA-TTTTAAAAAAACGTGGATGAAATTTCAAAAGGATATTCCATATTTTAGTCGAATAGA
* *
81496286 AAATTGAAACCCAGCACGATTGGGCACGACCTCCCAAACTTCCAAACACGAAGTATTGCCTCGTT
1 AAATTGAAACCCAGCACGATTGGGCACGACTTCCCAAACTTCCAAACACGAAATATTGCCTCGTT
* ** * *** *
81496351 TTAATTTTAAAAAAAAACATGGACAAAATTTCCAAAGGATATTTTGTATTTTAG-CTGAA-CGAA
66 TTAATTTT--AAAAAAACGTGGATGAAATTTCAAAAGGATATTCCATATTTTAGTC-GAATAG-A
* * * * *
81496414 AAATTGAAACCCAACACGATTGGGCACGAC-CCCTCGAACTCCCAAACACAAAATATT
1 AAATTGAAACCCAGCACGATTGGGCACGACTTCC-CAAACTTCCAAACACGAAATATT
81496471 TCCTTATTTG
Statistics
Matches: 483, Mismatches: 68, Indels: 33
0.83 0.12 0.06
Matches are distributed among these distances:
123 6 0.01
124 5 0.01
125 63 0.13
126 4 0.01
127 149 0.31
128 145 0.30
129 39 0.08
130 48 0.10
131 18 0.04
132 6 0.01
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.28
Consensus pattern (126 bp):
AAATTGAAACCCAGCACGATTGGGCACGACTTCCCAAACTTCCAAACACGAAATATTGCCTCGTT
TTAATTTTAAAAAAACGTGGATGAAATTTCAAAAGGATATTCCATATTTTAGTCGAATAGA
Found at i:81496212 original size:257 final size:254
Alignment explanation
Indices: 81495864--81496479 Score: 731
Period size: 257 Copynumber: 2.4 Consensus size: 254
81495854 AACACGAATG
* * * * *
81495864 AAATTTCAAAAGGATATTTTGTATTTTAGTCGAATGGAAGATTGAAGCCCAGCACGATTAGGCAT
1 AAATTTCAAAAGGATATTTTGTATTTTAGTCGAATGAAAAATTGAAACCCAGCACGATTGGGCAC
* ** * * ** *
81495929 GACTTCCCAAACTTTCAAACACGAAATATTGTCTCGTTTT-A-TTTTAAAAACATGTGGATGAAA
66 GAC-TCTCAAACTCCCAAACACGAAATATTGCCTCATTTTAATTTTTAAAAACACATGGACGAAA
* *
81495992 TTTCAAAAAAGGATATTCCATATTTTAGTCGAATAGAAAATTGAAGCCCAGCACGATTGGGCACG
130 TTTC--AAAAGGATATTCCATATTTTAGCCGAATAGAAAATTGAAACCCAGCACGATTGGGCACG
* * * * * **
81496057 ACTTCCCAAACTTCCAAGCATGAAATATTGCCTCGTTTT-ATTTT-AAGAAAAACGTGGATG
193 ACCTCCCAAACTTCCAAACACGAAATATTGCCTCGTTTTAATTTTAAAAAAAAACATGGACA
* * *
81496117 AAATTTCAAAAAAAGGATATTCTATATTTTAGTCGAATGAAAAAAATGAAACCCAGCACGATTGG
1 AAATTTC---AAAAGGATATTTTGTATTTTAGTCGAATG-AAAAATTGAAACCCAGCACGATTGG
* *
81496182 GCA-GATCTCTCAAACTCCCCAAATACGAAATATTGCCTCATTTTAATTTTTAAAAAGACATGGA
62 GCACGA-CTCTCAAACT-CCCAAACACGAAATATTGCCTCATTTTAATTTTTAAAAACACATGGA
* * * *
81496246 CGAAATTTCCAAAGGATATTTCGTATTTTAGCCGAATGGAAAATTGAAACCCAGCACGATTGGGC
125 CGAAATTTCAAAAGGATATTCCATATTTTAGCCGAATAGAAAATTGAAACCCAGCACGATTGGGC
*
81496311 ACGACCTCCCAAACTTCCAAACACGAAGTATTGCCTCGTTTTAATTTTAAAAAAAAACATGGACA
190 ACGACCTCCCAAACTTCCAAACACGAAATATTGCCTCGTTTTAATTTTAAAAAAAAACATGGACA
* * *
81496376 AAATTTCCAAAGGATATTTTGTATTTTAG-CTGAACGAAAAATTGAAACCCAACACGATTGGGCA
1 AAATTTCAAAAGGATATTTTGTATTTTAGTC-GAATGAAAAATTGAAACCCAGCACGATTGGGCA
* * * * *
81496440 CGACCCCTCGAACTCCCAAACACAAAATATTTCCTTATTT
65 CGA-CTCTCAAACTCCCAAACACGAAATATTGCCTCATTT
81496480 GAGAAGGTTC
Statistics
Matches: 307, Mismatches: 44, Indels: 22
0.82 0.12 0.06
Matches are distributed among these distances:
253 7 0.02
255 49 0.16
256 70 0.23
257 134 0.44
258 6 0.02
259 41 0.13
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.28
Consensus pattern (254 bp):
AAATTTCAAAAGGATATTTTGTATTTTAGTCGAATGAAAAATTGAAACCCAGCACGATTGGGCAC
GACTCTCAAACTCCCAAACACGAAATATTGCCTCATTTTAATTTTTAAAAACACATGGACGAAAT
TTCAAAAGGATATTCCATATTTTAGCCGAATAGAAAATTGAAACCCAGCACGATTGGGCACGACC
TCCCAAACTTCCAAACACGAAATATTGCCTCGTTTTAATTTTAAAAAAAAACATGGACA
Found at i:81496324 original size:128 final size:126
Alignment explanation
Indices: 81495777--81496479 Score: 682
Period size: 128 Copynumber: 5.5 Consensus size: 126
81495767 CCCAAACGGT
* * ** ** * * * * *
81495777 AAATCGAAACCTAGCACGATTGGGCACGATTTATCGAATTTCCAAATACGAAACATTGTCTCATT
1 AAATTGAAACCCAGCACGATTGGGCACGACCTCCCAAACTTCCAAACACGAAATATTGCCTCATT
* * * * *
81495842 TTAA-TTTGAGAAAACACGAATGAAATTTCAAAAGGATATTTTGTATTTTAGTCGAATGGA
66 TTAATTTTAAAAAAACATGGATGAAATTTCAAAAGGATATTTCGTATTTTAGTCGAATGGA
* * * * * * * *
81495902 AGATTGAAGCCCAGCACGATTAGGCATGACTTCCCAAACTTTCAAACACGAAATATTGTCTCGTT
1 AAATTGAAACCCAGCACGATTGGGCACGACCTCCCAAACTTCCAAACACGAAATATTGCCTCATT
* ** * * *
81495967 TT-ATTTTAAAAACATGTGGATGAAATTTCAAAAAAGGATATTCCATATTTTAGTCGAATAGA
66 TTAATTTTAAAAAAACATGGATGAAATTTC--AAAAGGATATTTCGTATTTTAGTCGAATGGA
* * * * *
81496029 AAATTGAAGCCCAGCACGATTGGGCACGACTTCCCAAACTTCCAAGCATGAAATATTGCCTCGTT
1 AAATTGAAACCCAGCACGATTGGGCACGACCTCCCAAACTTCCAAACACGAAATATTGCCTCATT
* *
81496094 TT-ATTTTAAGAAAAACGTGGATGAAATTTCAAAAAAAGGATA-TTCTATATTTTAGTCGAATGA
66 TTAATTTTAA-AAAAACATGGATGAAATTTC---AAAAGGATATTTC-GTATTTTAGTCGAATG-
*
81496157 AA
125 GA
* * * * *
81496159 AAAATGAAACCCAGCACGATTGGGCA-GATCTCTCAAACTCCCCAAATACGAAATATTGCCTCAT
1 AAATTGAAACCCAGCACGATTGGGCACGACCTCCCAAACT-TCCAAACACGAAATATTGCCTCAT
* * * *
81496223 TTTAATTTTTAAAAAGACATGGACGAAATTTCCAAAGGATATTTCGTATTTTAGCCGAATGGA
65 TTTAA-TTTTAAAAAAACATGGATGAAATTTCAAAAGGATATTTCGTATTTTAGTCGAATGGA
* *
81496286 AAATTGAAACCCAGCACGATTGGGCACGACCTCCCAAACTTCCAAACACGAAGTATTGCCTCGTT
1 AAATTGAAACCCAGCACGATTGGGCACGACCTCCCAAACTTCCAAACACGAAATATTGCCTCATT
** * * * *
81496351 TTAATTTTAAAAAAAAACATGGACAAAATTTCCAAAGGATATTTTGTATTTTAG-CTGAACGAA
66 TTAATTTT--AAAAAAACATGGATGAAATTTCAAAAGGATATTTCGTATTTTAGTC-GAATGGA
* * * * * *
81496414 AAATTGAAACCCAACACGATTGGGCACGACC-CCTCGAACTCCCAAACACAAAATATTTCCTTAT
1 AAATTGAAACCCAGCACGATTGGGCACGACCTCC-CAAACTTCCAAACACGAAATATTGCCTCAT
81496478 TT
65 TT
81496480 GAGAAGGTTC
Statistics
Matches: 487, Mismatches: 75, Indels: 29
0.82 0.13 0.05
Matches are distributed among these distances:
124 1 0.00
125 70 0.14
126 4 0.01
127 148 0.30
128 154 0.32
129 39 0.08
130 47 0.10
131 18 0.04
132 6 0.01
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (126 bp):
AAATTGAAACCCAGCACGATTGGGCACGACCTCCCAAACTTCCAAACACGAAATATTGCCTCATT
TTAATTTTAAAAAAACATGGATGAAATTTCAAAAGGATATTTCGTATTTTAGTCGAATGGA
Found at i:81496931 original size:17 final size:17
Alignment explanation
Indices: 81496911--81496943 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
81496901 ATATGTATGC
*
81496911 AAATGAAATAAAAAATA
1 AAATAAAATAAAAAATA
81496928 AAATAAAATAAAAAAT
1 AAATAAAATAAAAAAT
81496944 GTAGATAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (17 bp):
AAATAAAATAAAAAATA
Found at i:81500563 original size:19 final size:19
Alignment explanation
Indices: 81500541--81500582 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
81500531 TTTCTAATGT
*
81500541 TTTTTAATATTTTTTATAA
1 TTTTTAATAATTTTTATAA
*
81500560 TTTTTAATAATTTTTATAG
1 TTTTTAATAATTTTTATAA
81500579 TTTT
1 TTTT
81500583 AGAATGAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (19 bp):
TTTTTAATAATTTTTATAA
Found at i:81500582 original size:9 final size:10
Alignment explanation
Indices: 81500527--81500575 Score: 55
Period size: 10 Copynumber: 5.0 Consensus size: 10
81500517 TAAAATGAAT
*
81500527 ATAATTTCTA
1 ATAATTTTTA
**
81500537 ATGTTTTTTA
1 ATAATTTTTA
*
81500547 AT-ATTTTTT
1 ATAATTTTTA
81500556 ATAATTTTTA
1 ATAATTTTTA
81500566 ATAATTTTTA
1 ATAATTTTTA
81500576 TAGTTTTAGA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
9 7 0.22
10 25 0.78
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (10 bp):
ATAATTTTTA
Found at i:81509212 original size:27 final size:27
Alignment explanation
Indices: 81509182--81509360 Score: 173
Period size: 27 Copynumber: 6.6 Consensus size: 27
81509172 ATATTGAGCC
* *
81509182 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
81509209 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
81509236 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
81509264 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
81509291 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
81509318 CGCACACTTAGTGCAACATAGTTGAA-T
1 CGCACACTTAGTGCTACATA-ATCAACT
81509345 CGCACACTTAGTGCTA
1 CGCACACTTAGTGCTA
81509361 TACAATTTAA
Statistics
Matches: 130, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 103 0.79
28 27 0.21
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:81509321 original size:82 final size:81
Alignment explanation
Indices: 81509203--81509358 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
81509193 TGCTATATAA
* *
81509203 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
81509268 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** **
81509285 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTTGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
81509349 CACTTAGTGC
65 CACTTAGTGC
81509359 TATACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 16 0.25
82 49 0.75
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:81515019 original size:40 final size:40
Alignment explanation
Indices: 81514975--81515094 Score: 213
Period size: 40 Copynumber: 3.0 Consensus size: 40
81514965 CCGGACATAG
* *
81514975 TACCAGCACTAAGCCTGCGGGATTTAACCTGGATATATAT
1 TACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATAT
81515015 TACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATAT
1 TACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATAT
*
81515055 TACCAGCACGAAGCCTACGGGATTTAACCCGGATATATAT
1 TACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATAT
81515095 ATTATATCGA
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 77 1.00
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (40 bp):
TACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATAT
Found at i:81522677 original size:40 final size:40
Alignment explanation
Indices: 81522592--81522679 Score: 140
Period size: 40 Copynumber: 2.2 Consensus size: 40
81522582 TTAAGTCCGG
* * *
81522592 ATATAGTACCAGCACTAAGCCTGCGGGATTTAACCCGGAT
1 ATATATTAACAGCACGAAGCCTGCGGGATTTAACCCGGAT
*
81522632 ATATATTAACAGCACGAAGCCTGCGGGATTTAACCTGGAT
1 ATATATTAACAGCACGAAGCCTGCGGGATTTAACCCGGAT
81522672 ATATATTA
1 ATATATTA
81522680 TATCGAGAGC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.26
Consensus pattern (40 bp):
ATATATTAACAGCACGAAGCCTGCGGGATTTAACCCGGAT
Found at i:81528016 original size:19 final size:19
Alignment explanation
Indices: 81527994--81528031 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
81527984 TTTTACCATC
*
81527994 TCTTTCTTT-TTTTCTTTTT
1 TCTTT-TTTCTTTTATTTTT
81528013 TCTTTTTTCTTTTATTTTT
1 TCTTTTTTCTTTTATTTTT
81528032 GCCACAAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.84
Consensus pattern (19 bp):
TCTTTTTTCTTTTATTTTT
Found at i:81528018 original size:6 final size:7
Alignment explanation
Indices: 81527996--81528025 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
81527986 TTACCATCTC
81527996 TTTCTTTT
1 TTTC-TTT
81528004 TTTCTTT
1 TTTCTTT
81528011 TTTCTTT
1 TTTCTTT
81528018 TTTCTTT
1 TTTCTTT
81528025 T
1 T
81528026 ATTTTTGCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 18 0.82
8 4 0.18
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTCTTT
Found at i:81529847 original size:15 final size:16
Alignment explanation
Indices: 81529827--81529856 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
81529817 AAGATCTTAT
81529827 AATCAT-ACCTTACTC
1 AATCATAACCTTACTC
81529842 AATCATAACCTTACT
1 AATCATAACCTTACT
81529857 GAGGGTTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.37, C:0.30, G:0.00, T:0.33
Consensus pattern (16 bp):
AATCATAACCTTACTC
Found at i:81530138 original size:42 final size:42
Alignment explanation
Indices: 81530022--81530181 Score: 169
Period size: 42 Copynumber: 3.8 Consensus size: 42
81530012 CATAGGACTG
* *
81530022 TACCAATGCCATATCCCAGATATGGTCTTACATGTAA-TCTCG
1 TACCAATGCCATATCCCAGATATGGTCTTACACG-AAGTCTCA
* * * * *
81530064 TATCGATACCAATAGCCCAGCTATGGTCTTACACGAAGTCTCA
1 TACCAATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCA
* *
81530107 TACCAATGCCATATCCCAAATATGGTCTTACACGTAGTCTCA
1 TACCAATGCCATATCCCAGATATGGTCTTACACGAAGTCTCA
*** **
81530149 TATTGATGCCATATCCCCTATATGGTCTTACAC
1 TACCAATGCCATATCCCAGATATGGTCTTACAC
81530182 ATAGTCTTAA
Statistics
Matches: 97, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
42 65 0.67
43 32 0.33
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.30
Consensus pattern (42 bp):
TACCAATGCCATATCCCAGATATGGTCTTACACGAAGTCTCA
Found at i:81534334 original size:46 final size:46
Alignment explanation
Indices: 81534281--81534456 Score: 164
Period size: 46 Copynumber: 3.8 Consensus size: 46
81534271 TATTTGGGCA
*
81534281 TCCGAACTCCTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
81534327 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
81534372 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACCTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
81534420 -CCTGAGCTCGTTGAGTTGAGTTCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81534457 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 17, Indels: 20
0.74 0.12 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 5 0.05
46 57 0.55
47 28 0.27
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:81534436 original size:93 final size:93
Alignment explanation
Indices: 81534277--81534449 Score: 276
Period size: 93 Copynumber: 1.9 Consensus size: 93
81534267 GGGATATTTG
* *
81534277 GGCATCCGAACTCCTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCCTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCGTTGAG
81534342 TTGAGTCCGAGTTCGTGAAATGTAACTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
* * *
81534370 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACCTATGGATGCGAACG-CCTGAGCTCGTTGA
1 GGCATCCGAACTCCTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCC-GAACTCGTTGA
*
81534434 GTTGAGTTCGAGTTCG
65 GTTGAGTCCGAGTTCG
81534450 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCCTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAAATGTAACTA
Found at i:81540213 original size:42 final size:42
Alignment explanation
Indices: 81540096--81540257 Score: 198
Period size: 42 Copynumber: 3.8 Consensus size: 42
81540086 TACCGTACCA
* *
81540096 ATGCCATATCCTAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACATGTAGTCTCGTATCG
* * * * *
81540138 ATGTCAATAGCCAAGTTATGGTCTTACATGTAGTCTCATATCG
1 ATG-CCATATCCCAGATATGGTCTTACATGTAGTCTCGTATCG
* * *
81540181 ATGCCATATCCCATATATGGTCTTACACGTAGTCTCGTATTG
1 ATGCCATATCCCAGATATGGTCTTACATGTAGTCTCGTATCG
* * *
81540223 ATGTCATATCCCCGATATGGTCTTACATATAGTCT
1 ATGCCATATCCCAGATATGGTCTTACATGTAGTCT
81540258 TAATAACCCT
Statistics
Matches: 100, Mismatches: 19, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
42 64 0.64
43 36 0.36
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.36
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGTAGTCTCGTATCG
Found at i:81543538 original size:43 final size:43
Alignment explanation
Indices: 81543490--81543652 Score: 195
Period size: 43 Copynumber: 3.8 Consensus size: 43
81543480 ACCGAGATGA
*
81543490 GATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TACTGT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGATA-TGT
* * *
81543533 GATTACATGTAAGACCATGTCTGGGACATAGGCATCGTTATAT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGATATGT
* * * *
81543576 GATTTCGTGTAAGACCATGTCTGGGACAATGGCATCGATATGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGATATGT
* * * *
81543619 GATAACATGTAAGATCATATCTGGGATA-TGGCAT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCAT
81543653 TGTATGAGCT
Statistics
Matches: 103, Mismatches: 16, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
42 6 0.06
43 95 0.92
44 2 0.02
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATCGATATGT
Found at i:81547192 original size:42 final size:43
Alignment explanation
Indices: 81547145--81547258 Score: 149
Period size: 42 Copynumber: 2.7 Consensus size: 43
81547135 TGAGATTACA
** *
81547145 TGTAAGACCATGTCTGGGACATTGGCATTGTACTGTGA-TTAG
1 TGTAAGACCATGTCTGGGACATTGGCATCATACTATGATTTAG
* ** *
81547187 TGTAAGACCATGTCTGGGACATAGGCATCATTGTATGATTTCG
1 TGTAAGACCATGTCTGGGACATTGGCATCATACTATGATTTAG
*
81547230 TGTAAGACCATGTTTGGGACATTGGCATC
1 TGTAAGACCATGTCTGGGACATTGGCATC
81547259 GATATGAGAT
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
42 32 0.52
43 30 0.48
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCATACTATGATTTAG
Found at i:81548146 original size:13 final size:13
Alignment explanation
Indices: 81548128--81548153 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
81548118 ATGATTTATG
81548128 ATTGATTTGTAAT
1 ATTGATTTGTAAT
81548141 ATTGATTTGTAAT
1 ATTGATTTGTAAT
81548154 TTGCCTTGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
ATTGATTTGTAAT
Found at i:81553764 original size:46 final size:46
Alignment explanation
Indices: 81553714--81553934 Score: 399
Period size: 46 Copynumber: 4.8 Consensus size: 46
81553704 TGGTTGAGCA
81553714 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
81553760 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
81553806 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
81553852 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
81553898 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81553935 GCGGGTTACA
Statistics
Matches: 171, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
45 2 0.01
46 169 0.99
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:81561602 original size:44 final size:44
Alignment explanation
Indices: 81561539--81561626 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
81561529 AATAAGCTAA
*
81561539 ATGTGTTATTTTAGATCAAGAAAGACGTGGAATCGACCTCAATC
1 ATGTGTTATTTTAGATCAAGAAAGACATGGAATCGACCTCAATC
81561583 ATGTGTTATTTTAGATCAAGAAAGACATGGAATCGACCTCAATC
1 ATGTGTTATTTTAGATCAAGAAAGACATGGAATCGACCTCAATC
81561627 GAGGAAAAGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (44 bp):
ATGTGTTATTTTAGATCAAGAAAGACATGGAATCGACCTCAATC
Found at i:81562011 original size:46 final size:46
Alignment explanation
Indices: 81561960--81562133 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
81561950 GTTGAGCATT
81561960 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* * * *
81562006 TGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TC
* *
81562053 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* *
81562099 CGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81562134 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
Found at i:81562119 original size:93 final size:93
Alignment explanation
Indices: 81561955--81562126 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
81561945 GGATGGTTGA
* * * *
81561955 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81562020 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
81562048 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81562113 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
81562127 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:81564668 original size:28 final size:28
Alignment explanation
Indices: 81564607--81564670 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 28
81564597 GATTAATACT
*
81564607 AAAATTAAAAATGAAATAAACAAATATT
1 AAAATTAAAAATGAAATAAACAAATATG
*
81564635 AGAAATTAAAAA-GAAAATAGA-AAATAATG
1 A-AAATTAAAAATG-AAATAAACAAAT-ATG
81564664 AAAATTA
1 AAAATTA
81564671 TAGAAGTTCT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
28 12 0.39
29 19 0.61
ACGTcount: A:0.69, C:0.02, G:0.08, T:0.22
Consensus pattern (28 bp):
AAAATTAAAAATGAAATAAACAAATATG
Found at i:81567430 original size:9 final size:9
Alignment explanation
Indices: 81567379--81567428 Score: 50
Period size: 9 Copynumber: 5.7 Consensus size: 9
81567369 TAATGTTTAC
81567379 AATTTAAAA
1 AATTTAAAA
*
81567388 AATTCAAAA
1 AATTTAAAA
*
81567397 AATATAAAA
1 AATTTAAAA
81567406 AATATT--AA
1 AAT-TTAAAA
*
81567414 AATTTATAA
1 AATTTAAAA
81567423 AATTTA
1 AATTTA
81567429 TAGAAAAAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
7 2 0.06
8 5 0.15
9 26 0.76
10 1 0.03
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (9 bp):
AATTTAAAA
Found at i:81574612 original size:3 final size:3
Alignment explanation
Indices: 81574604--81574644 Score: 73
Period size: 3 Copynumber: 13.3 Consensus size: 3
81574594 AACACCAAAT
81574604 TTA TTA TTA TTA TTA TTA TTA TTTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA T
81574645 ACTACTTTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 34 0.92
4 3 0.08
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:81574630 original size:22 final size:22
Alignment explanation
Indices: 81574602--81574644 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
81574592 GAAACACCAA
81574602 ATTTATTATTATTATTATTATT
1 ATTTATTATTATTATTATTATT
81574624 ATTTATTATTATTATTATTAT
1 ATTTATTATTATTATTATTAT
81574645 ACTACTTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (22 bp):
ATTTATTATTATTATTATTATT
Found at i:81574631 original size:19 final size:19
Alignment explanation
Indices: 81574607--81574644 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
81574597 ACCAAATTTA
81574607 TTATTATTATTATTATTAT
1 TTATTATTATTATTATTAT
81574626 TTATTATTATTATTATTAT
1 TTATTATTATTATTATTAT
81574645 ACTACTTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
TTATTATTATTATTATTAT
Found at i:81576697 original size:26 final size:25
Alignment explanation
Indices: 81576668--81576729 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 25
81576658 TAAAAACTTT
81576668 TTTAGATTTTGTTGATTTTTT-AAATA
1 TTTAGATTTT-TT-ATTTTTTAAAATA
*
81576694 TTTAAATATTTTTATTTTTTAAAATA
1 TTTAGAT-TTTTTATTTTTTAAAATA
81576720 TTTATGATTT
1 TTTA-GATTT
81576730 ATAAAATGGA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
25 7 0.23
26 19 0.61
27 5 0.16
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (25 bp):
TTTAGATTTTTTATTTTTTAAAATA
Found at i:81578265 original size:23 final size:20
Alignment explanation
Indices: 81578237--81578289 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 20
81578227 TCATATAAAA
*
81578237 ATTAAATTTTTAATAATATAAT
1 ATTAAATTATTAA-AATAT-AT
81578259 ATGTAAA-TATTAAAATATAT
1 AT-TAAATTATTAAAATATAT
81578279 ATTAAATTATT
1 ATTAAATTATT
81578290 CATATTTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
19 4 0.14
20 8 0.29
21 5 0.18
22 7 0.25
23 4 0.14
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (20 bp):
ATTAAATTATTAAAATATAT
Found at i:81578979 original size:24 final size:24
Alignment explanation
Indices: 81578950--81579003 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
81578940 TATATTTTAA
* *
81578950 ATATTTAGTATTTATTGGTATAAT
1 ATATTTAGTATTTATTAGCATAAT
*
81578974 ATATTTATTATTTATTAGCATAAT
1 ATATTTAGTATTTATTAGCATAAT
*
81578998 TTATTT
1 ATATTT
81579004 GACTTAAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.57
Consensus pattern (24 bp):
ATATTTAGTATTTATTAGCATAAT
Found at i:81583694 original size:26 final size:27
Alignment explanation
Indices: 81583638--81583697 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
81583628 TGGAGGAAGC
81583638 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
*
81583665 GTTCTGGTGGCTCTGCCAC-AATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
81583691 GTTCTGG
1 GTTCTGG
81583698 CACCCATGCT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 14 0.44
27 18 0.56
ACGTcount: A:0.17, C:0.23, G:0.25, T:0.35
Consensus pattern (27 bp):
GTTCTGGTGGCTATGCCACAAATATCT
Found at i:81591009 original size:27 final size:27
Alignment explanation
Indices: 81590978--81591155 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
81590968 TAAATTGTAC
81590978 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
81591005 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81591031 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
81591059 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
81591087 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81591114 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
81591141 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
81591156 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:81591092 original size:82 final size:81
Alignment explanation
Indices: 81590979--81591134 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
81590969 AAATTGTACA
* *
81590979 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
81591043 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
81591060 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
81591125 TGCGAGTTGA
65 TGCGAATTGA
81591135 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:81591146 original size:82 final size:81
Alignment explanation
Indices: 81590975--81591155 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
81590965 GATTAAATTG
* *
81590975 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
81591040 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
81591056 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
81591120 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
81591138 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
81591156 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:81599197 original size:27 final size:27
Alignment explanation
Indices: 81599166--81599343 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
81599156 TAAATTGTAC
81599166 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
81599193 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81599219 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
81599247 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
81599275 GGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81599302 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
81599329 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
81599344 GACTCAATAT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 107 0.82
28 24 0.18
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:81599280 original size:82 final size:81
Alignment explanation
Indices: 81599167--81599322 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
81599157 AAATTGTACA
*
81599167 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
81599231 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
81599248 GCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTGGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
81599313 TGCGAGTTGA
65 TGCGAATTGA
81599323 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:81599334 original size:82 final size:81
Alignment explanation
Indices: 81599163--81599343 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
81599153 GATTAAATTG
*
81599163 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAATGAATATGATGCACTAA
81599228 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
81599244 TGCGGCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTGGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
81599308 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
81599326 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
81599344 GACTCAATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:81602628 original size:28 final size:28
Alignment explanation
Indices: 81602551--81602628 Score: 68
Period size: 28 Copynumber: 2.8 Consensus size: 28
81602541 GAGACCTCAG
* **
81602551 AGGGT-AAAATGACCAAAATACCCCTAA
1 AGGGTAAAAATGACTATTATACCCCTAA
* *
81602578 AGGGTAAAAATTACTATTCTACCCCTAA
1 AGGGTAAAAATGACTATTATACCCCTAA
* ** *
81602606 TGGGTGGAAATGACTGTTATACC
1 AGGGTAAAAATGACTATTATACC
81602629 GTAGAGGTAG
Statistics
Matches: 39, Mismatches: 11, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
27 5 0.13
28 34 0.87
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.24
Consensus pattern (28 bp):
AGGGTAAAAATGACTATTATACCCCTAA
Found at i:81602795 original size:27 final size:27
Alignment explanation
Indices: 81602765--81602828 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
81602755 TACTGTTCTG
81602765 GTGGCTTTGCCACGTATT-CTGATATTA
1 GTGGCTTTGCCACGT-TTACTGATATTA
* *
81602792 GTGGCTATGCCACGTTTACTGCTATTA
1 GTGGCTTTGCCACGTTTACTGATATTA
**
81602819 GCAGCTTTGC
1 GTGGCTTTGC
81602829 TGCGTTACTA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
26 2 0.06
27 29 0.94
ACGTcount: A:0.17, C:0.22, G:0.23, T:0.38
Consensus pattern (27 bp):
GTGGCTTTGCCACGTTTACTGATATTA
Found at i:81603399 original size:23 final size:23
Alignment explanation
Indices: 81603371--81603415 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
81603361 CCATTTTTAG
*
81603371 CTCGTTGGAGCTTATTGTTTCAA
1 CTCGTTGGAGCTTACTGTTTCAA
81603394 CTCGTTGGAGCTTACTGTTTCA
1 CTCGTTGGAGCTTACTGTTTCA
81603416 GCTCATAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.16, C:0.20, G:0.22, T:0.42
Consensus pattern (23 bp):
CTCGTTGGAGCTTACTGTTTCAA
Found at i:81603478 original size:23 final size:23
Alignment explanation
Indices: 81603378--81603479 Score: 98
Period size: 23 Copynumber: 4.4 Consensus size: 23
81603368 TAGCTCGTTG
* * ** *
81603378 GAGCTTATTGTTTCAACTCGTTG
1 GAGCTTACTGTTTCAGCTCAATA
81603401 GAGCTTACTGTTTCAGCTC-ATAA
1 GAGCTTACTGTTTCAGCTCAAT-A
* * **
81603424 GAGTTTAATGTTTTCAGCTCAGCA
1 GAGCTTACTG-TTTCAGCTCAATA
81603448 GAGCTTACTGTTTCAGCTCAATA
1 GAGCTTACTGTTTCAGCTCAATA
81603471 GAGCTTACT
1 GAGCTTACT
81603480 ATCCATCAAC
Statistics
Matches: 64, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
22 1 0.02
23 45 0.70
24 18 0.28
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.37
Consensus pattern (23 bp):
GAGCTTACTGTTTCAGCTCAATA
Found at i:81603660 original size:20 final size:20
Alignment explanation
Indices: 81603621--81603705 Score: 118
Period size: 20 Copynumber: 4.3 Consensus size: 20
81603611 GACATAGAAT
*
81603621 CTATTTAAATGGAT-AAATA
1 CTATTTATATGGATGAAATA
*
81603640 CTGTTTATATGGATGAAATA
1 CTATTTATATGGATGAAATA
81603660 CTATTTATATGGATGAAATA
1 CTATTTATATGGATGAAATA
* **
81603680 TTATTTATATGGATGAGCTA
1 CTATTTATATGGATGAAATA
81603700 CTATTT
1 CTATTT
81603706 GCAAATGGTG
Statistics
Matches: 58, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
19 12 0.21
20 46 0.79
ACGTcount: A:0.36, C:0.06, G:0.15, T:0.42
Consensus pattern (20 bp):
CTATTTATATGGATGAAATA
Found at i:81606787 original size:46 final size:46
Alignment explanation
Indices: 81606638--81606807 Score: 168
Period size: 46 Copynumber: 3.7 Consensus size: 46
81606628 GGACTATTGT
* * * *
81606638 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTACGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGA-GACGA
* ***
81606684 GAGCCAGTGAAAGACCATG-CTCGGGACATGGCATCGATAGT-GAGACGA
1 GAGCCAGTGTAAGA-CATGTCT-GGGACAT-GCATC-AGCCTCGAGACGA
* *
81606732 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACG-A
81606779 -AGCCAGTGTAAGACATGTCTGGGACATGC
1 GAGCCAGTGTAAGACATGTCTGGGACATGC
81606808 GTTGGCTACG
Statistics
Matches: 101, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
45 2 0.02
46 52 0.51
47 23 0.23
48 23 0.23
49 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.31, T:0.20
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACGA
Found at i:81614344 original size:32 final size:32
Alignment explanation
Indices: 81614303--81614367 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
81614293 AAACCACTTC
81614303 CCGACTAGGGTCAATTTTGGGCTGTCACAACT
1 CCGACTAGGGTCAATTTTGGGCTGTCACAACT
81614335 CCGACTAGGGTCAATTTTGGGCTGTCACAACT
1 CCGACTAGGGTCAATTTTGGGCTGTCACAACT
81614367 C
1 C
81614368 TCCCCCAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.22, C:0.26, G:0.25, T:0.28
Consensus pattern (32 bp):
CCGACTAGGGTCAATTTTGGGCTGTCACAACT
Found at i:81619674 original size:79 final size:82
Alignment explanation
Indices: 81619563--81619747 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
81619553 GCTACTCGTT
* *
81619563 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
81619626 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
81619643 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
81619706 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
81619723 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81619748 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:81619747 original size:40 final size:40
Alignment explanation
Indices: 81619544--81619747 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
81619534 CGGAATTTAA
** *
81619544 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
81619584 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
81619624 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
81619663 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
81619703 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
81619743 CCGGA
1 CCGGA
81619748 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:81627330 original size:15 final size:16
Alignment explanation
Indices: 81627305--81627334 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
81627295 AACCTAGCTA
81627305 TCATCTTTTCTTTCTT
1 TCATCTTTTCTTTCTT
81627321 TCAT-TTTTCTTTCT
1 TCATCTTTTCTTTCT
81627335 CCAACAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.07, C:0.23, G:0.00, T:0.70
Consensus pattern (16 bp):
TCATCTTTTCTTTCTT
Found at i:81628290 original size:46 final size:44
Alignment explanation
Indices: 81628232--81628340 Score: 130
Period size: 46 Copynumber: 2.4 Consensus size: 44
81628222 ATGAGACGAG
** *
81628232 AGCTAGTGTAAGACATGTCTGGGACATGAATCAGCCTCAAGA-TGTA
1 AGCTAGTGTAAGACATGTCAAGGACATGAATC-GACT-AAGAGT-TA
* *
81628278 AGCTAGTGTAAGACATGTCAAGGACATGCATCGACTATGAGTTA
1 AGCTAGTGTAAGACATGTCAAGGACATGAATCGACTAAGAGTTA
81628322 AGCTAGTGTAAGACCATGT
1 AGCTAGTGTAAGA-CATGT
81628341 TCGGGGCATG
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
44 18 0.32
45 9 0.16
46 29 0.52
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.25
Consensus pattern (44 bp):
AGCTAGTGTAAGACATGTCAAGGACATGAATCGACTAAGAGTTA
Found at i:81628303 original size:93 final size:91
Alignment explanation
Indices: 81628138--81628340 Score: 207
Period size: 93 Copynumber: 2.2 Consensus size: 91
81628128 GGACTATTGT
* * * *
81628138 GAGCTAGTGTAAGACATGTCTGGGAGATGTATCGGCCACATGACAAGAGCCAGTGTAGACCATGT
1 GAGCTAGTGTAAGACATGTCTGGGACATGAATCAGCCACAAGACAAGAGCCAGTGTAGACCATGT
* *
81628203 TCGGGACATGGCATCGGCAATGAGACGA
66 TCAGGACAT-GCATCGACAATGAG-CGA
* ** *
81628231 GAGCTAGTGTAAGACATGTCTGGGACATGAATCAGCCTCAAGATGTA-AGCTAGTGTAAGA-CAT
1 GAGCTAGTGTAAGACATGTCTGGGACATGAATCAGCCACAAGA-CAAGAGCCAGTGT-AGACCAT
* **
81628294 G-TCAAGGACATGCATCGACTATGAGTTA
64 GTTC-AGGACATGCATCGACAATGAGCGA
81628322 -AGCTAGTGTAAGACCATGT
1 GAGCTAGTGTAAGA-CATGT
81628341 TCGGGGCATG
Statistics
Matches: 93, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
90 13 0.14
91 6 0.06
92 14 0.15
93 56 0.60
94 4 0.04
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.22
Consensus pattern (91 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGAATCAGCCACAAGACAAGAGCCAGTGTAGACCATGT
TCAGGACATGCATCGACAATGAGCGA
Found at i:81635179 original size:10 final size:10
Alignment explanation
Indices: 81635164--81635188 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
81635154 TAAGGTATGA
81635164 ATTTTGTTCG
1 ATTTTGTTCG
81635174 ATTTTGTTCG
1 ATTTTGTTCG
81635184 ATTTT
1 ATTTT
81635189 TATGTTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.12, C:0.08, G:0.16, T:0.64
Consensus pattern (10 bp):
ATTTTGTTCG
Found at i:81635591 original size:22 final size:21
Alignment explanation
Indices: 81635566--81635612 Score: 69
Period size: 20 Copynumber: 2.2 Consensus size: 21
81635556 CTGTGTGGTC
*
81635566 ACACATGCCCATGTGGTTTGGG
1 ACACA-GCCCATGTGGCTTGGG
81635588 ACAC-GCCCATGTGGCTTGGG
1 ACACAGCCCATGTGGCTTGGG
81635608 ACACA
1 ACACA
81635613 CCCGTGTCCT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 19 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (21 bp):
ACACAGCCCATGTGGCTTGGG
Found at i:81635595 original size:20 final size:20
Alignment explanation
Indices: 81635572--81635611 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
81635562 GGTCACACAT
*
81635572 GCCCATGTGGTTTGGGACAC
1 GCCCATGTGGCTTGGGACAC
81635592 GCCCATGTGGCTTGGGACAC
1 GCCCATGTGGCTTGGGACAC
81635612 ACCCGTGTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.15, C:0.28, G:0.35, T:0.23
Consensus pattern (20 bp):
GCCCATGTGGCTTGGGACAC
Found at i:81642737 original size:42 final size:42
Alignment explanation
Indices: 81642658--81642739 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 42
81642648 CCAGAGTTTG
* * * *
81642658 GGAAAGAGTTCATTATTTATAACGATGTATCACATGTTGGAT
1 GGAAAGAGTTCACTATTTACAACGATGCATCAAATGTTGGAT
* *
81642700 GGAAAGAGTTCACTATTTACAGCGATGCGTCAAATGTTGG
1 GGAAAGAGTTCACTATTTACAACGATGCATCAAATGTTGG
81642740 GTTGGGATGT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (42 bp):
GGAAAGAGTTCACTATTTACAACGATGCATCAAATGTTGGAT
Found at i:81645620 original size:49 final size:47
Alignment explanation
Indices: 81645501--81645665 Score: 151
Period size: 49 Copynumber: 3.5 Consensus size: 47
81645491 TAATGCTAAT
* * * *
81645501 GCCATGTCCCAGACATGGTCTTACAATGGCTCATCCATCAAGTCAAT
1 GCCATGTCCCAGACATGGTCTTACAATGACTCATCAATCAAGCCAAC
* *
81645548 GCCATGTCCCAGACATGGTCTTACATTGACT-ATCGAAATCGAGGCCAAC
1 GCCATGTCCCAGACATGGTCTTACAATGACTCATC--AATC-AAGCCAAC
* * * * * *
81645597 GCCATGCCCCAGACATGGTCTTACACTGACACATC--TCGTAGTCAAT
1 GCCATGTCCCAGACATGGTCTTACAATGACTCATCAATC-AAGCCAAC
81645643 G-CATGTCCCAGACAT-GTCTTACA
1 GCCATGTCCCAGACATGGTCTTACA
81645666 CTGGCTTACA
Statistics
Matches: 100, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
44 8 0.08
45 13 0.13
46 11 0.11
47 29 0.29
48 3 0.03
49 33 0.33
50 3 0.03
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.24
Consensus pattern (47 bp):
GCCATGTCCCAGACATGGTCTTACAATGACTCATCAATCAAGCCAAC
Found at i:81645697 original size:46 final size:46
Alignment explanation
Indices: 81645498--81645765 Score: 233
Period size: 46 Copynumber: 5.7 Consensus size: 46
81645488 GTATAATGCT
*
81645498 AATGCCATGTCCCAGACATGGTCTTACAATGGCT-CATCCATCAAGTC
1 AATGCCATGTCCCAGACATGGTCTTACACTGGCTACAT--ATCAAGTC
* * * * *
81645545 AATGCCATGTCCCAGACATGGTCTTACATTGACTATCGAAATCGAGGCC
1 AATGCCATGTCCCAGACATGGTCTTACACTGGCTA-C-ATATC-AAGTC
* * * * *
81645594 AACGCCATGCCCCAGACATGGTCTTACACTGAC-ACATCTCGTAGTC
1 AATGCCATGTCCCAGACATGGTCTTACACTGGCTACATATC-AAGTC
81645640 AATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATATCAAGGTC
1 AATGCCATGTCCCAGACATGGTCTTACACTGGC-TACATATCAA-GTC
* * * * * * *
81645686 GATG-CATGTCCCAAACAT-GTCTTACACTAGTTCCCATCTCATTGTC
1 AATGCCATGTCCCAGACATGGTCTTACACTGGCT-ACATATCA-AGTC
*
81645732 GATGCCATGTCCCAGACATGGTCTTACACTGGCT
1 AATGCCATGTCCCAGACATGGTCTTACACTGGCT
81645766 CACAAATAAC
Statistics
Matches: 182, Mismatches: 28, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
44 12 0.07
45 15 0.08
46 58 0.32
47 46 0.25
48 16 0.09
49 34 0.19
50 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.26
Consensus pattern (46 bp):
AATGCCATGTCCCAGACATGGTCTTACACTGGCTACATATCAAGTC
Found at i:81652748 original size:48 final size:48
Alignment explanation
Indices: 81652689--81653008 Score: 267
Period size: 48 Copynumber: 6.7 Consensus size: 48
81652679 TATGTGCGCT
* * *
81652689 AGTGTAAGACCATGTCTAGGACATGGCATTGGCCACGATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGATATGAGAGCC
* * * * ** ** *
81652737 AGTGTAAGACCATATTTGGAACATGGCATCGACGTTTTTGTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGATATGAGAGCC
*
81652785 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGATA--AGTGCAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-TGATATGAGAGC-C
* * *
81652832 TAGTGTAAGACCATGTCTGGGACGTGGCATCTGCCAT-ATTATGGGAGCC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGA-TATGAGAGCC
* * * * *
81652881 AGTGTAAGACTATGTCGGGGACATGGCATCGG-CATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-TGATATGAGAGCC
* * ** * * *
81652929 AGTGTTATACCATGTCTGGGGTATGGCATCAGCC-TCGACATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT-GATATGAGAGCC
* *
81652977 AGTGTAA-ACCATGTTTGGAACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
81653009 AATTCACCCT
Statistics
Matches: 210, Mismatches: 51, Indels: 23
0.74 0.18 0.08
Matches are distributed among these distances:
46 4 0.02
47 25 0.12
48 173 0.82
49 5 0.02
50 3 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGATATGAGAGCC
Found at i:81652941 original size:144 final size:144
Alignment explanation
Indices: 81652676--81652958 Score: 329
Period size: 144 Copynumber: 2.0 Consensus size: 144
81652666 AACATTTCAG
* *
81652676 TGATATGTGCGCTAGTGTAAGACCATGTCTAGGACATGGCATTGGCCACGATATGAGAGCCAGTG
1 TGATAAGTGCACTAGTGTAAGACCATGTCTAGGACATGGCATTGGCCACGATATGAGAGCCAGTG
** * ** *
81652741 TAAGACCATATTTGGAACATGGCATCGACGTTTTTGTGAGAGCCAGTGTAAGACCATGTCTGGGA
66 TAAGACCATATCGGGAACATGGCATCGACGATTGAGCGAGAGCCAGTGTAAGACCATGTCTGGGA
81652806 CATGGCATCGGCAT
131 CATGGCATCGGCAT
* * * *
81652820 TGATAAGTGCACTAGTGTAAGACCATGTCTGGGACGTGGCATCT-GCCA-TATTATGGGAGCCAG
1 TGATAAGTGCACTAGTGTAAGACCATGTCTAGGACATGGCAT-TGGCCACGA-TATGAGAGCCAG
* * * * * * *
81652883 TGTAAGACTATGTCGGGGACATGGCATCGGC-ATTGAGACGAGAGCTAGTGTTATACCATGTCTG
64 TGTAAGACCATATCGGGAACATGGCATCGACGATTGAG-CGAGAGCCAGTGTAAGACCATGTCTG
**
81652947 GGGTATGGCATC
128 GGACATGGCATC
81652959 AGCCTCGACA
Statistics
Matches: 115, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
143 4 0.03
144 110 0.96
145 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.26
Consensus pattern (144 bp):
TGATAAGTGCACTAGTGTAAGACCATGTCTAGGACATGGCATTGGCCACGATATGAGAGCCAGTG
TAAGACCATATCGGGAACATGGCATCGACGATTGAGCGAGAGCCAGTGTAAGACCATGTCTGGGA
CATGGCATCGGCAT
Found at i:81660337 original size:100 final size:101
Alignment explanation
Indices: 81660148--81660341 Score: 318
Period size: 100 Copynumber: 1.9 Consensus size: 101
81660138 TAGCCGAAGC
* * * * *
81660148 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACATGTA
1 TATCAGGTACGCATAGTAACCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTA
81660213 GTAGCCTGCACTTAGTACTACACACGTGATCAAAGT
66 GTAGCCTGCACTTAGTACTACACACGTGATCAAAGT
* *
81660249 TATCAGGTACGCATAGTAACCTGCACTTAGTACTACACATGCGACC-AACAATCTGGTACACGTA
1 TATCAGGTACGCATAGTAACCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTA
81660313 GTAGCCTGCACTTAGTACTACACACGTGA
66 GTAGCCTGCACTTAGTACTACACACGTGA
81660342 CCTCACAATA
Statistics
Matches: 86, Mismatches: 7, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
100 44 0.51
101 42 0.49
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (101 bp):
TATCAGGTACGCATAGTAACCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTA
GTAGCCTGCACTTAGTACTACACACGTGATCAAAGT
Found at i:81666037 original size:48 final size:48
Alignment explanation
Indices: 81665981--81666247 Score: 281
Period size: 48 Copynumber: 5.6 Consensus size: 48
81665971 TGCTAATGTT
* *
81665981 AGACCATGTCTGGGACATGGCATCGGCCA-CGATATGAGAGCCAGTGAA
1 AGACCATGTCTGGGACATGGCATCGG-CATTGATATGAGAGCCAGTGTA
* ** * * * *
81666029 AGACCATGT-TGGGACATTGCATCAACGA-TGTTGTGAGAACCAATGTA
1 AGACCATGTCTGGGACATGGCATCGGC-ATTGATATGAGAGCCAGTGTA
* * * *
81666076 AGACCATGTCTGGGACATGGCATCGGCATTAATATGTGCGCTAGTGTA
1 AGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCCAGTGTA
* * *
81666124 AGACCATTTCTGGGACATGGCATCGGCATTGAGACGAGAGCCAGTGTA
1 AGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCCAGTGTA
* * * * *
81666172 AGGCCATGTCTGGGGCATGGCATCGGCATTGACAAGTGAGCCAGTGTA
1 AGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCCAGTGTA
*
81666220 AGACCATG-CTTGGAACATGGCATCGGCA
1 AGACCATGTC-TGGGACATGGCATCGGCA
81666248 ATTCACCCTA
Statistics
Matches: 179, Mismatches: 36, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
46 1 0.01
47 38 0.21
48 140 0.78
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (48 bp):
AGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCCAGTGTA
Found at i:81667782 original size:48 final size:48
Alignment explanation
Indices: 81667675--81667827 Score: 192
Period size: 48 Copynumber: 3.3 Consensus size: 48
81667665 GGGGTGTTAC
* *
81667675 ATCACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGG
1 ATCACATGTCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGG
** * *
81667723 ATCGTAGGTCGATGCCAATGCCATGTCCCCGACATGGTCTTACATGGG
1 ATCACATGTCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGG
* *
81667771 ATCACATGTCGATGCCGAT---A-G-CCCAG-CTTGGTCTTACATGGG
1 ATCACATGTCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGG
81667813 ATCACATGTCGATGC
1 ATCACATGTCGATGC
81667828 TGATAGCCTA
Statistics
Matches: 93, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
42 30 0.32
43 4 0.04
44 1 0.01
45 1 0.01
48 57 0.61
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (48 bp):
ATCACATGTCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGG
Found at i:81667819 original size:42 final size:43
Alignment explanation
Indices: 81667756--81667853 Score: 171
Period size: 42 Copynumber: 2.3 Consensus size: 43
81667746 TGTCCCCGAC
81667756 ATGGTCTTACATGGGATCACATGTCGATGCCGATAGCCCAGCT
1 ATGGTCTTACATGGGATCACATGTCGATGCCGATAGCCCAGCT
* *
81667799 -TGGTCTTACATGGGATCACATGTCGATGCTGATAGCCTAGCT
1 ATGGTCTTACATGGGATCACATGTCGATGCCGATAGCCCAGCT
81667841 ATGGTCTTACATG
1 ATGGTCTTACATG
81667854 AAATTAAATA
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
42 40 0.77
43 12 0.23
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (43 bp):
ATGGTCTTACATGGGATCACATGTCGATGCCGATAGCCCAGCT
Found at i:81671833 original size:15 final size:15
Alignment explanation
Indices: 81671809--81671848 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
81671799 TCCTTTAATT
81671809 CTAT-CGGAGCCATC
1 CTATACGGAGCCATC
81671823 CTATACGGAGCCATC
1 CTATACGGAGCCATC
81671838 CTATACGGAGC
1 CTATACGGAGC
81671849 AATCAAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 4 0.16
15 21 0.84
ACGTcount: A:0.25, C:0.33, G:0.23, T:0.20
Consensus pattern (15 bp):
CTATACGGAGCCATC
Found at i:81686789 original size:39 final size:40
Alignment explanation
Indices: 81686744--81686928 Score: 178
Period size: 40 Copynumber: 4.7 Consensus size: 40
81686734 GCTCCTCGTT
* * *
81686744 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
81686784 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
81686823 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * * * * *
81686863 CAAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CATAACCCGGATTTAGTAAC-TCGCA
* *
81686904 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACATAACCCGGA
81686929 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 37 0.30
40 74 0.61
41 11 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:81686844 original size:40 final size:39
Alignment explanation
Indices: 81686711--81686928 Score: 165
Period size: 40 Copynumber: 5.5 Consensus size: 39
81686701 AAATCACGTA
* * **
81686711 CCTTCGGGATTTAA-CCGGATATAGCTCCTCGTTCA-AATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCG--CACAATG
* * * * *
81686750 CCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCACAATG
* *
81686789 CCTTCGGGACATAACCCGGATTTAACAACTCGCACGAATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCAC-AATG
* * *
81686829 CCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCAC-AATG
* * * * *
81686869 CCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCACAAAG
1 CCTTCGGGA-CTTAACCCGGATTTA-GCAAC-TCGCACAATG
*
81686909 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
81686929 CAGCATTCAA
Statistics
Matches: 143, Mismatches: 29, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
38 2 0.01
39 48 0.34
40 85 0.59
41 8 0.06
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (39 bp):
CCTTCGGGACTTAACCCGGATTTAGCAACTCGCACAATG
Found at i:81698172 original size:48 final size:48
Alignment explanation
Indices: 81698111--81698319 Score: 176
Period size: 47 Copynumber: 4.6 Consensus size: 48
81698101 CGGTTATACG
* * *
81698111 TGTAACGTTGTGCTAAATGGATATACCACGATTACACATATTGAAACA
1 TGTAACGTGGTGCTAAGTGGATATACCACGATTACATATATTGAAACA
* * **
81698159 TGTAACGTGGTGCTAAGTGAATATGCCAC-AGTTACATATATTGATTCA
1 TGTAACGTGGTGCTAAGTGGATATACCACGA-TTACATATATTGAAACA
* * *
81698207 T-TAATGTTGTGCTAAGTGGATATACCACG---------GTT-AAACA
1 TGTAACGTGGTGCTAAGTGGATATACCACGATTACATATATTGAAACA
* * * **
81698244 TGT-ACGTGGTGCTAAGTGGATATGCCATGGTTACATATATTGATTCA
1 TGTAACGTGGTGCTAAGTGGATATACCACGATTACATATATTGAAACA
81698291 T-TAACGTGGTGCTAAGTGGATATACCACG
1 TGTAACGTGGTGCTAAGTGGATATACCACG
81698320 GTTAAATACG
Statistics
Matches: 124, Mismatches: 23, Indels: 29
0.70 0.13 0.16
Matches are distributed among these distances:
37 26 0.21
38 3 0.02
46 3 0.02
47 52 0.42
48 40 0.32
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (48 bp):
TGTAACGTGGTGCTAAGTGGATATACCACGATTACATATATTGAAACA
Found at i:81698259 original size:84 final size:85
Alignment explanation
Indices: 81698154--81698355 Score: 318
Period size: 84 Copynumber: 2.4 Consensus size: 85
81698144 ACACATATTG
* *
81698154 AAACATGTAACGTGGTGCTAAGTGAATATGCCACAGTTACATATATTGATTCATTAATGTTGTGC
1 AAACATGTAACGTGGTGCTAAGTGAATATGCCACAGTTACATATATTGATTCATTAACGTGGTGC
81698219 TAAGTGGATATACCACGGTT
66 TAAGTGGATATACCACGGTT
* **
81698239 AAACATGT-ACGTGGTGCTAAGTGGATATGCCATGGTTACATATATTGATTCATTAACGTGGTGC
1 AAACATGTAACGTGGTGCTAAGTGAATATGCCACAGTTACATATATTGATTCATTAACGTGGTGC
81698303 TAAGTGGATATACCACGGTT
66 TAAGTGGATATACCACGGTT
* *
81698323 AAATACGTAACGTGGTGCTAAGT-AGATATGCCA
1 AAACATGTAACGTGGTGCTAAGTGA-ATATGCCA
81698356 TGGTTATACA
Statistics
Matches: 107, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
84 77 0.72
85 30 0.28
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.31
Consensus pattern (85 bp):
AAACATGTAACGTGGTGCTAAGTGAATATGCCACAGTTACATATATTGATTCATTAACGTGGTGC
TAAGTGGATATACCACGGTT
Found at i:81698384 original size:84 final size:83
Alignment explanation
Indices: 81698154--81698392 Score: 257
Period size: 84 Copynumber: 2.8 Consensus size: 83
81698144 ACACATATTG
* ** * * * * *
81698154 AAACATGTAACGTGGTGCTAAGT-GAATATGCCACAGTTACATATATTGATTCATTAATGTTGTG
1 AAACACGT-ACGTGGTGCTAAGTAG-ATATGCCATGGTTACACATATTAATT-ATAAAAGTGGTG
81698218 CTAAGTGGATATACCACGGTT
63 CTAAGTGGATATACCACGGTT
* * * * * *
81698239 AAACATGTACGTGGTGCTAAGTGGATATGCCATGGTTACATATATTGATTCATTAACGTGGTGCT
1 AAACACGTACGTGGTGCTAAGTAGATATGCCATGGTTACACATATTAATT-ATAAAAGTGGTGCT
81698304 AAGTGGATATACCACGGTT
65 AAGTGGATATACCACGGTT
* * *
81698323 AAATACGTAACGTGGTGCTAAGTAGATATGCCATGGTTATACATGTTAATT-TGAAAAGTGGTGC
1 AAACACGT-ACGTGGTGCTAAGTAGATATGCCATGGTTACACATATTAATTAT-AAAAGTGGTGC
81698387 TAAGTG
64 TAAGTG
81698393 CGTATGCCAC
Statistics
Matches: 138, Mismatches: 13, Indels: 7
0.87 0.08 0.04
Matches are distributed among these distances:
83 1 0.01
84 91 0.66
85 46 0.33
ACGTcount: A:0.31, C:0.13, G:0.24, T:0.32
Consensus pattern (83 bp):
AAACACGTACGTGGTGCTAAGTAGATATGCCATGGTTACACATATTAATTATAAAAGTGGTGCTA
AGTGGATATACCACGGTT
Found at i:81711068 original size:47 final size:47
Alignment explanation
Indices: 81710996--81711157 Score: 207
Period size: 47 Copynumber: 3.6 Consensus size: 47
81710986 TCTTCTTGCT
*
81710996 ACATGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTA
1 ACATGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTA
*
81711043 ACATGGTGCTAAGTGGATATACCACGGTTA-A-ACA-TG------TA
1 ACATGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTA
* *
81711081 ACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTA
1 ACATGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTA
* *
81711128 ACGTGATGCTAAGTGGATATACCACGGTTA
1 ACATGGTGCTAAGTGGATATACCACGGTTA
81711158 AACATGTAAC
Statistics
Matches: 99, Mismatches: 7, Indels: 18
0.80 0.06 0.15
Matches are distributed among these distances:
38 30 0.30
39 1 0.01
40 2 0.02
41 2 0.02
44 2 0.02
45 2 0.02
46 1 0.01
47 59 0.60
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.31
Consensus pattern (47 bp):
ACATGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTA
Found at i:81711097 original size:38 final size:38
Alignment explanation
Indices: 81711041--81711202 Score: 171
Period size: 38 Copynumber: 4.0 Consensus size: 38
81711031 ATTGATTCAT
81711041 TAACATGGTGCTAAGTGGATATACCACGGTTAAACATG
1 TAACATGGTGCTAAGTGGATATACCACGGTTAAACATG
* * *
81711079 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTG
1 TAACATGGTGCTAAGTGGATATACCACGGTTA-A-ACA-TG
* *
81711120 ATTCATTAACGTGATGCTAAGTGGATATACCACGGTTAAACATG
1 ------TAACATGGTGCTAAGTGGATATACCACGGTTAAACATG
* * *
81711164 TAACATGGTGCTAAGTGGATATGCCACGGCTATACATG
1 TAACATGGTGCTAAGTGGATATACCACGGTTAAACATG
81711202 T
1 T
81711203 TAATTTGAAA
Statistics
Matches: 104, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
38 64 0.62
39 1 0.01
40 2 0.02
41 2 0.02
44 2 0.02
45 2 0.02
46 1 0.01
47 30 0.29
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (38 bp):
TAACATGGTGCTAAGTGGATATACCACGGTTAAACATG
Found at i:81711142 original size:85 final size:85
Alignment explanation
Indices: 81710996--81711192 Score: 367
Period size: 85 Copynumber: 2.3 Consensus size: 85
81710986 TCTTCTTGCT
*
81710996 ACATGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGGTGCTAAGTGGAT
1 ACATGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGATGCTAAGTGGAT
81711061 ATACCACGGTTAAACATGTA
66 ATACCACGGTTAAACATGTA
* *
81711081 ACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGATGCTAAGTGGAT
1 ACATGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGATGCTAAGTGGAT
81711146 ATACCACGGTTAAACATGTA
66 ATACCACGGTTAAACATGTA
81711166 ACATGGTGCTAAGTGGATATGCCACGG
1 ACATGGTGCTAAGTGGATATGCCACGG
81711193 CTATACATGT
Statistics
Matches: 108, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 108 1.00
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.29
Consensus pattern (85 bp):
ACATGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGATGCTAAGTGGAT
ATACCACGGTTAAACATGTA
Found at i:81714823 original size:31 final size:31
Alignment explanation
Indices: 81714785--81714848 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
81714775 TTGCGAGTGA
*
81714785 AAGACTCAGACATTTCGAAAACTGCTTTCAG
1 AAGACTCAGACATTTCAAAAACTGCTTTCAG
81714816 AAGACTCAGACATTTCAAAAACTGCTTTCAG
1 AAGACTCAGACATTTCAAAAACTGCTTTCAG
81714847 AA
1 AA
81714849 CGAGGTACGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.22, G:0.14, T:0.25
Consensus pattern (31 bp):
AAGACTCAGACATTTCAAAAACTGCTTTCAG
Found at i:81717509 original size:27 final size:27
Alignment explanation
Indices: 81717433--81717510 Score: 120
Period size: 27 Copynumber: 2.9 Consensus size: 27
81717423 ATTACCAAAG
* * *
81717433 TACCATCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
81717460 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
81717487 TACCCTCGATTTACAAAATTACTG
1 TACCCTCGATTTACAGAATTACTG
81717511 AAATACCCTT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.29, C:0.22, G:0.10, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:81717517 original size:27 final size:27
Alignment explanation
Indices: 81717388--81717546 Score: 106
Period size: 27 Copynumber: 5.9 Consensus size: 27
81717378 AATACTTTAG
* * *
81717388 TTTACCAAATTACTGAAATGCCCTCAA
1 TTTACAAAATTACTGAAATACCCTCGA
** * *
81717415 TTTGTAAAATTAC-CAAAGTACCATCGA
1 TTTACAAAATTACTGAAA-TACCCTCGA
* * * ***
81717442 TTTATAGAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACTGAAATACCCTCGA
* ***
81717469 TTTACAGAATTACTGTTTTACCCTCGA
1 TTTACAAAATTACTGAAATACCCTCGA
*
81717496 TTTACAAAATTACTGAAATACCCT-TA
1 TTTACAAAATTACTGAAATACCCTCGA
**
81717522 GTTTACAAAATTACCAAAATACCCT
1 -TTTACAAAATTACTGAAATACCCT
81717547 TGATCAGTAA
Statistics
Matches: 106, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
26 4 0.04
27 102 0.96
ACGTcount: A:0.36, C:0.22, G:0.08, T:0.34
Consensus pattern (27 bp):
TTTACAAAATTACTGAAATACCCTCGA
Found at i:81717545 original size:54 final size:54
Alignment explanation
Indices: 81717487--81717599 Score: 120
Period size: 54 Copynumber: 2.1 Consensus size: 54
81717477 ATTACTGTTT
* ** *
81717487 TACCCTCGATTTA-CAAAATTACTGAAATACCCTTAGTTTACAAAATTACCAAAA
1 TACCCTCGA-TCAGCAAAATTACCAAAATACCCCTAGTTTACAAAATTACCAAAA
* * * ** *
81717541 TACCCTTGATCAGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 TACCCTCGATCAGCAAAATTACCAAAATACCCCTAGTTTACAAAATTACCAAAA
81717595 TACCC
1 TACCC
81717600 CTAGTTTGTA
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
53 2 0.04
54 46 0.96
ACGTcount: A:0.41, C:0.23, G:0.07, T:0.29
Consensus pattern (54 bp):
TACCCTCGATCAGCAAAATTACCAAAATACCCCTAGTTTACAAAATTACCAAAA
Found at i:81717547 original size:27 final size:27
Alignment explanation
Indices: 81717501--81717693 Score: 178
Period size: 27 Copynumber: 7.2 Consensus size: 27
81717491 CTCGATTTAC
** **
81717501 AAAATTACTGAAATACCCTTAGTTTAC
1 AAAATTACCAAAATACCCTTAGTTTGT
**
81717528 AAAATTACCAAAATACCCTT-GATCAGT
1 AAAATTACCAAAATACCCTTAG-TTTGT
* *
81717555 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
* *
81717582 AAAATTACTAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
* *
81717609 AAAATTACC-AAATAACCC-CAGGCTTGT
1 AAAATTACCAAAAT-ACCCTTA-GTTTGT
*
81717636 AAAATTACCAAAATACCCTGA-TTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
* * * *
81717662 GAAATTATCAAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
81717689 AAAAT
1 AAAAT
81717694 ATCGAAATAC
Statistics
Matches: 139, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
26 28 0.20
27 105 0.76
28 6 0.04
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTAGTTTGT
Found at i:81717668 original size:26 final size:27
Alignment explanation
Indices: 81717528--81717708 Score: 183
Period size: 27 Copynumber: 6.8 Consensus size: 27
81717518 CTTAGTTTAC
* **
81717528 AAAATTACCAAAATACCCTTGATCAGT
1 AAAATTACCAAAATACCCCTGATTTGT
*
81717555 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
*
81717582 AAAATTACTAAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGT
* **
81717609 AAAATTACC-AAATAACCCCAGGCTTGT
1 AAAATTACCAAAAT-ACCCCTGATTTGT
81717636 AAAATTACCAAAATA-CCCTGATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* * *
81717662 GAAATTATCAAAATA-CCCTCAATTTGT
1 AAAATTACCAAAATACCCCT-GATTTGT
* *
81717689 AAAA-TATCGAAATACCCCTG
1 AAAATTACCAAAATACCCCTG
81717709 TAGGGTAGGA
Statistics
Matches: 129, Mismatches: 19, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
26 38 0.29
27 87 0.67
28 4 0.03
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.28
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Found at i:81717707 original size:27 final size:27
Alignment explanation
Indices: 81717644--81717705 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 27
81717634 GTAAAATTAC
* *
81717644 CAAAATACCCT-GATTTGTGAAATTAT
1 CAAAATACCCTCAATTTGTGAAAATAT
81717670 CAAAATACCCTCAATTTGT-AAAATAT
1 CAAAATACCCTCAATTTGTGAAAATAT
*
81717696 CGAAATACCC
1 CAAAATACCC
81717706 CTGTAGGGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
26 26 0.81
27 6 0.19
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (27 bp):
CAAAATACCCTCAATTTGTGAAAATAT
Found at i:81718501 original size:27 final size:26
Alignment explanation
Indices: 81718463--81718522 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
81718453 CCACATATAT
* *
81718463 ATATATGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
81718489 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
81718516 ATATCTG
1 ATATCTG
81718523 GCAACCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:81722026 original size:42 final size:42
Alignment explanation
Indices: 81721828--81722015 Score: 295
Period size: 42 Copynumber: 4.5 Consensus size: 42
81721818 TGATATTTAA
*
81721828 GTGTAAGACCATGTCTGGGACATCGGTATCGTATCTGATTTC
1 GTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATTTC
* * * *
81721870 GTGTAAGACCATGTTTAGGACATTGGCATCGAATCTGATTTC
1 GTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATTTC
*
81721912 GTGTAAGACCATGTCTGTGACATCGGCATCGTATCTGATTTC
1 GTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATTTC
* *
81721954 GTGTAAGACCATGTCTGGGACACCGGCATCGTATCTAATTTC
1 GTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATTTC
*
81721996 GTGTAAGACCCTGTCTGGGA
1 GTGTAAGACCATGTCTGGGA
81722016 TAGAGGCATC
Statistics
Matches: 132, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 132 1.00
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATTTC
Found at i:81722026 original size:84 final size:83
Alignment explanation
Indices: 81721782--81722015 Score: 297
Period size: 84 Copynumber: 2.8 Consensus size: 83
81721772 ATCTGAGATA
* * * * *
81721782 TCGTGTAAGACCGTGTCTGGGACACAAGCCTCGATTTGATATTTAAGTGTAAGACCATGTCTGGG
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCGATCT-A-ATTT-CGTGTAAGACCATGTCTGGG
*
81721847 ACATCGGTATCGTATCTGATT
63 ACATCGGCATCGTATCTGATT
* * ** * *
81721868 TCGTGTAAGACCATGTTTAGGACATTGGCATCGAATCTGATTTCGTGTAAGACCATGTCTGTGAC
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCG-ATCTAATTTCGTGTAAGACCATGTCTGGGAC
81721933 ATCGGCATCGTATCTGATT
65 ATCGGCATCGTATCTGATT
* *
81721952 TCGTGTAAGACCATGTCTGGGACACCGGCATCGTATCTAATTTCGTGTAAGACCCTGTCTGGGA
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCG-ATCTAATTTCGTGTAAGACCATGTCTGGGA
81722016 TAGAGGCATC
Statistics
Matches: 127, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
84 94 0.74
85 4 0.03
86 26 0.20
87 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (83 bp):
TCGTGTAAGACCATGTCTGGGACACAGGCATCGATCTAATTTCGTGTAAGACCATGTCTGGGACA
TCGGCATCGTATCTGATT
Found at i:81724017 original size:122 final size:122
Alignment explanation
Indices: 81723800--81724043 Score: 470
Period size: 122 Copynumber: 2.0 Consensus size: 122
81723790 GGAATAGGTG
81723800 GGGGTGGAAGAGATTGACTATTCGGGTTCATTCGAATGAACTTCGTATACCAGGAATTCATCATA
1 GGGGTGGAAGAGATTGACTATTCGGGTTCATTCGAATGAACTTCGTATACCAGGAATTCATCATA
*
81723865 TGGAGAAAGGCTTCCCTAGCCTCATCTCCTCCTCCCTGATTAATGGTCACGGGTCTA
66 TGGAGAAAGGCTTCCCTAGCCTCATCTCCTCCTCCCTGATTAACGGTCACGGGTCTA
*
81723922 GGGGTGGAAGAGATTGACTGTTCGGGTTCATTCGAATGAACTTCGTATACCAGGAATTCATCATA
1 GGGGTGGAAGAGATTGACTATTCGGGTTCATTCGAATGAACTTCGTATACCAGGAATTCATCATA
81723987 TGGAGAAAGGCTTCCCTAGCCTCATCTCCTCCTCCCTGATTAACGGTCACGGGTCTA
66 TGGAGAAAGGCTTCCCTAGCCTCATCTCCTCCTCCCTGATTAACGGTCACGGGTCTA
81724044 CTCTCAACCA
Statistics
Matches: 120, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
122 120 1.00
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.28
Consensus pattern (122 bp):
GGGGTGGAAGAGATTGACTATTCGGGTTCATTCGAATGAACTTCGTATACCAGGAATTCATCATA
TGGAGAAAGGCTTCCCTAGCCTCATCTCCTCCTCCCTGATTAACGGTCACGGGTCTA
Found at i:81727882 original size:27 final size:27
Alignment explanation
Indices: 81727852--81728111 Score: 260
Period size: 27 Copynumber: 9.7 Consensus size: 27
81727842 TAATAAAGAG
81727852 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
81727879 AAATTA-TCGAAATACCC-CAGATTTGTG
1 AAATTACT-GAAATACCCTC-GATTTGTA
* * * *
81727906 AAATTACCGAAATATCC-CGATTTATG
1 AAATTACTGAAATACCCTCGATTTGTA
*
81727932 AAATTACTGAAACACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
81727959 AAATTACCGAAACACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
81727986 AAATTA-TCGAAACACCCTTGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* **
81728013 AAATTTCCAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
81728040 GAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
** * ** *
81728067 AAATTACCAAAACACTTTCGACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
81728094 AAATTA-TCGAAATACCCT
1 AAATTACT-GAAATACCCT
81728112 TGTAGTGTAA
Statistics
Matches: 191, Mismatches: 35, Indels: 14
0.80 0.15 0.06
Matches are distributed among these distances:
26 23 0.12
27 168 0.88
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:81728009 original size:54 final size:54
Alignment explanation
Indices: 81727852--81728111 Score: 303
Period size: 54 Copynumber: 4.8 Consensus size: 54
81727842 TAATAAAGAG
* *
81727852 AAATTACTGAAATACCCTCGATTTGTAAAATTATCGAAATACCC-CAGATTTGTG
1 AAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTC-GATTTGTA
* * * *
81727906 AAATTACCGAAATATCC-CGATTTATGAAATTA-CTGAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTATC-GAAATACCCTCGATTTGTA
* * * *
81727959 AAATTACCGAAACACCCTCAATTTGTAAAATTATCGAAACACCCTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTA
* * *
81728013 AAATTTCCAAAATACCCTCGATTTGTAGAATTA-CTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTATC-GAAATACCCTCGATTTGTA
* * ** *
81728067 AAATTACCAAAACACTTTCGACTTGTAAAATTATCGAAATACCCT
1 AAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAATACCCT
81728112 TGTAGTGTAA
Statistics
Matches: 175, Mismatches: 25, Indels: 12
0.83 0.12 0.06
Matches are distributed among these distances:
52 1 0.01
53 44 0.25
54 128 0.73
55 2 0.01
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (54 bp):
AAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTA
Found at i:81728120 original size:27 final size:27
Alignment explanation
Indices: 81728090--81728154 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
81728080 ACTTTCGACT
* *
81728090 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATGACCGAAATACCCTTGTAG
* *
81728117 TGTAAAGTGACCGACATACCCTTGTAG
1 TGTAAAATGACCGAAATACCCTTGTAG
*
81728144 GGTAAAATGAC
1 TGTAAAATGAC
81728155 TATTTTGCCC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (27 bp):
TGTAAAATGACCGAAATACCCTTGTAG
Found at i:81737125 original size:23 final size:23
Alignment explanation
Indices: 81737096--81737161 Score: 89
Period size: 23 Copynumber: 2.9 Consensus size: 23
81737086 TCACCAATAT
* *
81737096 CACAGCATAGTTGCTAATAGTAA
1 CACAGCAAAGCTGCTAATAGTAA
*
81737119 CGA-AGCAAAGCTACTAATAGTAA
1 C-ACAGCAAAGCTGCTAATAGTAA
81737142 CACAGCAAAGCTGCTAATAG
1 CACAGCAAAGCTGCTAATAG
81737162 CGGTAAATGT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
22 1 0.03
23 35 0.95
24 1 0.03
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.20
Consensus pattern (23 bp):
CACAGCAAAGCTGCTAATAGTAA
Found at i:81738877 original size:41 final size:41
Alignment explanation
Indices: 81738802--81738879 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 41
81738792 ATAGTGATAT
*
81738802 TCGGGCTTTGAGCCTAGCAAGCCTTGTGCTGGTGAATTGGA
1 TCGGGCTTTGAGCCTAGCAAGCCTTGTGCCGGTGAATTGGA
* * *
81738843 TCGGGCTTTGTGCCTAGC-AGGCTTATTGCCGGTGAAT
1 TCGGGCTTTGAGCCTAGCAAGCCTT-GTGCCGGTGAAT
81738880 AAATAAGAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 5 0.16
41 27 0.84
ACGTcount: A:0.15, C:0.21, G:0.33, T:0.31
Consensus pattern (41 bp):
TCGGGCTTTGAGCCTAGCAAGCCTTGTGCCGGTGAATTGGA
Found at i:81742859 original size:40 final size:40
Alignment explanation
Indices: 81742782--81743005 Score: 292
Period size: 40 Copynumber: 5.5 Consensus size: 40
81742772 ACCCAAGTAT
* *
81742782 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* *
81742821 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
81742861 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
81742901 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* * *
81742944 CTTCGGGACTTAGCCCGAATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
81742984 CTTTGGAACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
81743006 CATCCGAATA
Statistics
Matches: 164, Mismatches: 14, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
39 12 0.07
40 116 0.71
41 1 0.01
43 35 0.21
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:81742978 original size:83 final size:80
Alignment explanation
Indices: 81742782--81743005 Score: 299
Period size: 83 Copynumber: 2.8 Consensus size: 80
81742772 ACCCAAGTAT
* * * *
81742782 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
*
81742846 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* *
81742861 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
81742925 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
* * * *
81742944 CTTCGGGACTTAGCCCGAATATAGTAACTTGCACAAATGCCTTTGGAACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
81743006 CATCCGAATA
Statistics
Matches: 127, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
79 13 0.10
80 49 0.39
83 65 0.51
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:81750739 original size:47 final size:47
Alignment explanation
Indices: 81750687--81750927 Score: 392
Period size: 47 Copynumber: 5.1 Consensus size: 47
81750677 CATACATATT
* * * *
81750687 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
81750734 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
81750781 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
81750828 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
81750875 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
81750922 TCACAT
1 TCACAT
81750928 AAAATCCTAA
Statistics
Matches: 182, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 182 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:81751540 original size:144 final size:142
Alignment explanation
Indices: 81751270--81751554 Score: 534
Period size: 144 Copynumber: 2.0 Consensus size: 142
81751260 CATTACGAGC
81751270 TGTTTTCCTGAGCAATAGTCACTAAATTATTTATAACTGGAGCTACAAAAAACTCCAAATCACTT
1 TGTTTTCCTGAGCAATAGTCACTAAATTATTTATAACTGGAGCTACAAAAAACTCCAAATCACTT
*
81751335 GCTGTTAATTTTCCCTGAATATAGACTCGTATATCTTCCATCCATAAAATTTCCAGAATTTTAGG
66 GCTGTTAATTTTCCCAGAATATAGACTCGTATATCTTCCATCCATAAAATTTCCAGAATTTTAGG
81751400 TTTGGCCAATCT
131 TTTGGCCAATCT
81751412 TGTTTTCCTGAGCAATAGTCACTAAATTATTTATAACTGGAGCTACAAAAAACTCCAAATCACCC
1 TGTTTTCCTGAGCAATAGTCACTAAATTATTTATAACTGGAGCTACAAAAAACTCCAAATCA--C
*
81751477 TTGCTTTTAATTTTCCCAGAATATAGACTCGTATATCTTCCATCCATAAAATTTCCAGAATTTTA
64 TTGCTGTTAATTTTCCCAGAATATAGACTCGTATATCTTCCATCCATAAAATTTCCAGAATTTTA
81751542 GGTTTGGCCAATC
129 GGTTTGGCCAATC
81751555 AATACCAGAT
Statistics
Matches: 139, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
142 62 0.45
144 77 0.55
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.35
Consensus pattern (142 bp):
TGTTTTCCTGAGCAATAGTCACTAAATTATTTATAACTGGAGCTACAAAAAACTCCAAATCACTT
GCTGTTAATTTTCCCAGAATATAGACTCGTATATCTTCCATCCATAAAATTTCCAGAATTTTAGG
TTTGGCCAATCT
Found at i:81755279 original size:40 final size:40
Alignment explanation
Indices: 81755235--81755426 Score: 276
Period size: 40 Copynumber: 4.8 Consensus size: 40
81755225 CCAGCATGAT
* * * *
81755235 TGCTCTTCGGGACCTAGCCTGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
81755275 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
81755315 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGGA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
81755355 TGCTCTTCGGGACTTAGTCTGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
81755395 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
81755427 CTCAATTCTC
Statistics
Matches: 132, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 132 1.00
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:81756969 original size:48 final size:48
Alignment explanation
Indices: 81756916--81757094 Score: 340
Period size: 48 Copynumber: 3.7 Consensus size: 48
81756906 ATCGCCTACG
* *
81756916 TATTTCAGACTAGCCATTCGGCTTTACCACATATACATATCTCATACA
1 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
81756964 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
1 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
81757012 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
1 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
81757060 TATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TATTTCACATTAGCCATTCGGCTTTACCACATATA
81757095 TGCATGTTCA
Statistics
Matches: 129, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 129 1.00
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
Found at i:81757136 original size:22 final size:22
Alignment explanation
Indices: 81757110--81757181 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
81757100 GTTCATATTC
81757110 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
81757132 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
81757156 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
81757179 ATC
1 ATC
81757182 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:81757138 original size:47 final size:47
Alignment explanation
Indices: 81757064--81757210 Score: 222
Period size: 47 Copynumber: 3.1 Consensus size: 47
81757054 CATACATATT
* * * *
81757064 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
81757111 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
81757158 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
81757205 TCACAT
1 TCACAT
81757211 AAAATCCTAA
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 92 1.00
ACGTcount: A:0.27, C:0.28, G:0.10, T:0.35
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:81760209 original size:40 final size:40
Alignment explanation
Indices: 81760136--81760359 Score: 301
Period size: 40 Copynumber: 5.5 Consensus size: 40
81760126 ACCCAAGTAT
* *
81760136 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
81760175 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
81760215 CTTCGAGACTTAGCCCGGGTATAG-CAACTACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
81760258 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
81760298 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
81760338 CTTCGGGACTTAGCCCAGATAT
1 CTTCGGGACTTAGCCCGGATAT
81760360 CATCCGAATA
Statistics
Matches: 169, Mismatches: 9, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
39 13 0.08
40 120 0.71
41 1 0.01
43 35 0.21
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:81760255 original size:83 final size:83
Alignment explanation
Indices: 81760136--81760359 Score: 336
Period size: 83 Copynumber: 2.8 Consensus size: 83
81760126 ACCCAAGTAT
*
81760136 CTTCGGGATTTAG-CCGGATATAGCAACT-C--GCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGCAACTACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
*
81760197 AGTCACTAGCACAAATGC
66 AGTAACTAGCACAAATGC
* *
81760215 CTTCGAGACTTAGCCCGGGTATAGCAACTACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGCAACTACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
*
81760280 AGTAACTTGCACAAATGC
66 AGTAACTAGCACAAATGC
* *
81760298 CTTCGGGACTTAGCCCGGATATAG-TA--ACTTGCACAAATGCCTTCGGGACTTAGCCCAGATAT
1 CTTCGGGACTTAGCCCGGATATAGCAACTACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
81760360 CATCCGAATA
Statistics
Matches: 132, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
79 11 0.08
80 49 0.37
81 1 0.01
82 1 0.01
83 70 0.53
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.24
Consensus pattern (83 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
AGTAACTAGCACAAATGC
Found at i:81761568 original size:20 final size:20
Alignment explanation
Indices: 81761543--81761590 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
81761533 TAGCATACTT
81761543 AACAAAATTTCAAATTTTTG
1 AACAAAATTTCAAATTTTTG
81761563 AACAAAATTTCAAATTTTTG
1 AACAAAATTTCAAATTTTTG
81761583 AACAAAAT
1 AACAAAAT
81761591 ATAACCTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.35
Consensus pattern (20 bp):
AACAAAATTTCAAATTTTTG
Found at i:81780639 original size:25 final size:25
Alignment explanation
Indices: 81780610--81780657 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
81780600 TTATAACATG
* *
81780610 AAAATAACCATTTTGCCCCTAGGTA
1 AAAATAACCATTATACCCCTAGGTA
*
81780635 AAAATGACCATTATACCCCTAGG
1 AAAATAACCATTATACCCCTAGG
81780658 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.25
Consensus pattern (25 bp):
AAAATAACCATTATACCCCTAGGTA
Found at i:81780741 original size:11 final size:11
Alignment explanation
Indices: 81780705--81780760 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
81780695 CATGGTATGT
81780705 ATGATATGCAC
1 ATGATATGCAC
* *
81780716 ATGACATG--T
1 ATGATATGCAC
81780725 ATGATATGCAC
1 ATGATATGCAC
*
81780736 ATGATATG--T
1 ATGATATGCAC
81780745 ATGATATGCAC
1 ATGATATGCAC
81780756 ATGAT
1 ATGAT
81780761 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:81780760 original size:20 final size:20
Alignment explanation
Indices: 81780694--81780760 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
81780684 ATTTTGATAG
*
81780694 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
81780714 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
81780734 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
81780754 ACATGAT
1 ACATGAT
81780761 GTAATCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:81780841 original size:23 final size:23
Alignment explanation
Indices: 81780811--81780859 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
81780801 AGGAAGTGAA
81780811 AAAGGGCTTATGCCCCAATTATT
1 AAAGGGCTTATGCCCCAATTATT
*
81780834 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAATTATT
81780857 AAA
1 AAA
81780860 AGAGGCTAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAATTATT
Found at i:81781112 original size:31 final size:31
Alignment explanation
Indices: 81781074--81781137 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
81781064 CGTTTACAGT
*
81781074 AAAGGCTTCGGCCCAGTAATATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
81781105 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
81781136 AA
1 AA
81781138 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:81787371 original size:60 final size:60
Alignment explanation
Indices: 81787278--81787396 Score: 211
Period size: 60 Copynumber: 2.0 Consensus size: 60
81787268 GTGATTATGG
* *
81787278 AATTCATAATTTGGGTATGTAAATAGGCTTATGGAAGGCCCATGAGTTGTCCAAAACCCA
1 AATTCATAATTTGGGTATGTAAATAGGCTTATGGAAAGCCCATGAGTTGGCCAAAACCCA
*
81787338 AATTCATAATTTGGGTATGTAAATGGGCTTATGGAAAGCCCATGAGTTGGCCAAAACCC
1 AATTCATAATTTGGGTATGTAAATAGGCTTATGGAAAGCCCATGAGTTGGCCAAAACCC
81787397 GGTAGAATTT
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 56 1.00
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.28
Consensus pattern (60 bp):
AATTCATAATTTGGGTATGTAAATAGGCTTATGGAAAGCCCATGAGTTGGCCAAAACCCA
Found at i:81789100 original size:11 final size:11
Alignment explanation
Indices: 81789064--81789119 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
81789054 CATGGTATGT
81789064 ATGATATGCAC
1 ATGATATGCAC
* *
81789075 ATGACATG--T
1 ATGATATGCAC
81789084 ATGATATGCAC
1 ATGATATGCAC
*
81789095 ATGATATG--T
1 ATGATATGCAC
81789104 ATGATATGCAC
1 ATGATATGCAC
81789115 ATGAT
1 ATGAT
81789120 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:81789119 original size:20 final size:20
Alignment explanation
Indices: 81789053--81789119 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
81789043 ATTTTGATAG
*
81789053 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
81789073 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
81789093 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
81789113 ACATGAT
1 ACATGAT
81789120 GTAATCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:81789264 original size:23 final size:24
Alignment explanation
Indices: 81789169--81789270 Score: 122
Period size: 23 Copynumber: 4.4 Consensus size: 24
81789159 GAGGAAGTGA
81789169 AAAAGGGCTTATGCCCCAGTT-TT
1 AAAAGGGCTTATGCCCCAGTTATT
* * *
81789192 TAATGGGATTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
81789216 -AAAGGGCTTATG-CCAAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
81789238 AAAAGGGCTTTTG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
81789261 AAAAGAGGCT
1 AAAAG-GGCT
81789271 AGGCCTCGAG
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
22 9 0.13
23 53 0.78
24 6 0.09
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:81789513 original size:31 final size:31
Alignment explanation
Indices: 81789478--81789541 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
81789468 CGTTTACAGT
81789478 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* **
81789509 AAAGGTTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
81789540 AA
1 AA
81789542 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:81816032 original size:88 final size:88
Alignment explanation
Indices: 81815883--81816058 Score: 334
Period size: 88 Copynumber: 2.0 Consensus size: 88
81815873 CCATTGCCAA
*
81815883 ACTTTAGTGCGAGGTTAGGTTTTGAGAAAAATGAGTTGGAATTCATTTAAGTAGATATTTTTGAT
1 ACTTTAGTGCGAGGATAGGTTTTGAGAAAAATGAGTTGGAATTCATTTAAGTAGATATTTTTGAT
81815948 AAACTGATTTATTGTATCGTTGC
66 AAACTGATTTATTGTATCGTTGC
*
81815971 ACTTTGGTGCGAGGATAGGTTTTGAGAAAAATGAGTTGGAATTCATTTAAGTAGATATTTTTGAT
1 ACTTTAGTGCGAGGATAGGTTTTGAGAAAAATGAGTTGGAATTCATTTAAGTAGATATTTTTGAT
81816036 AAACTGATTTATTGTATCGTTGC
66 AAACTGATTTATTGTATCGTTGC
81816059 GTTCTTTTGA
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
88 86 1.00
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.40
Consensus pattern (88 bp):
ACTTTAGTGCGAGGATAGGTTTTGAGAAAAATGAGTTGGAATTCATTTAAGTAGATATTTTTGAT
AAACTGATTTATTGTATCGTTGC
Found at i:81816555 original size:31 final size:31
Alignment explanation
Indices: 81816515--81816597 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
81816505 TCAGTCTCGA
*
81816515 CATAT-ACTGGGTCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
81816545 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
81816576 CATATCACT-AGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
81816598 ACTGTAAGTG
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
30 17 0.34
31 33 0.66
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:81816831 original size:24 final size:23
Alignment explanation
Indices: 81816790--81816861 Score: 72
Period size: 25 Copynumber: 3.0 Consensus size: 23
81816780 ACTTTATCAT
**
81816790 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACT-GAGGCAAAGCC-CTTTTA
*
81816815 ATAACTGAGGCAAAGCCCTTTTTG
1 ATAACTGAGGCAAAGCCC-TTTTA
*
81816839 ATAAACTGGGGCAAAGCCCTTTT
1 AT-AACTGAGGCAAAGCCCTTTT
81816862 CGGTAAACTG
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
23 1 0.02
24 19 0.46
25 21 0.51
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (23 bp):
ATAACTGAGGCAAAGCCCTTTTA
Found at i:81816845 original size:25 final size:25
Alignment explanation
Indices: 81816817--81816882 Score: 96
Period size: 25 Copynumber: 2.6 Consensus size: 25
81816807 CTCTTTTAAT
* *
81816817 AACTGAGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
81816842 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
81816867 AACTGGGGCATAGCCC
1 AACTGGGGCAAAGCCC
81816883 GGGCAAAGCC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:81816894 original size:36 final size:36
Alignment explanation
Indices: 81816847--81816918 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 36
81816837 TGATAAACTG
* * *
81816847 GGGCAAAGCCCTTTTCGGTAAACTGGGGCATAGCCC
1 GGGCAAAGCCCTTTTCGATAAACTAGGGCAAAGCCC
*
81816883 GGGCAAAGCCCTTTTTGATAAACTAGGGCAAAGCCC
1 GGGCAAAGCCCTTTTCGATAAACTAGGGCAAAGCCC
81816919 TTTTCGGTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.26, C:0.26, G:0.28, T:0.19
Consensus pattern (36 bp):
GGGCAAAGCCCTTTTCGATAAACTAGGGCAAAGCCC
Found at i:81816917 original size:25 final size:25
Alignment explanation
Indices: 81816883--81816947 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 25
81816873 GGCATAGCCC
*
81816883 GGGCAAAGCCCTTTTTGATAAACTA
1 GGGCAAAGCCCTTTTCGATAAACTA
* *
81816908 GGGCAAAGCCCTTTTCGGTAAACTG
1 GGGCAAAGCCCTTTTCGATAAACTA
*
81816933 GGGCATAGCCCTTTT
1 GGGCAAAGCCCTTTT
81816948 AGCACTTCCT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (25 bp):
GGGCAAAGCCCTTTTCGATAAACTA
Found at i:81816918 original size:61 final size:61
Alignment explanation
Indices: 81816823--81816943 Score: 233
Period size: 61 Copynumber: 2.0 Consensus size: 61
81816813 TAATAACTGA
*
81816823 GGCAAAGCCCTTTTTGATAAACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCATAGCCCG
1 GGCAAAGCCCTTTTTGATAAACTAGGGCAAAGCCCTTTTCGGTAAACTGGGGCATAGCCCG
81816884 GGCAAAGCCCTTTTTGATAAACTAGGGCAAAGCCCTTTTCGGTAAACTGGGGCATAGCCC
1 GGCAAAGCCCTTTTTGATAAACTAGGGCAAAGCCCTTTTCGGTAAACTGGGGCATAGCCC
81816944 TTTTAGCACT
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 59 1.00
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (61 bp):
GGCAAAGCCCTTTTTGATAAACTAGGGCAAAGCCCTTTTCGGTAAACTGGGGCATAGCCCG
Found at i:81817300 original size:59 final size:59
Alignment explanation
Indices: 81817208--81817324 Score: 207
Period size: 59 Copynumber: 2.0 Consensus size: 59
81817198 TCAATATTTC
*
81817208 CAAGTGTTTAAACAATGATCTTTAACCCACTTTATCAAATCCGGGCTTTTTGGCCCAAT
1 CAAGTGTTTAAACAATGATCTTTAACCCACTTTATCAAATCCGGGCTTCTTGGCCCAAT
* *
81817267 CAAGTGTTTAAATAATGATCTTTAACCCACTTTATCAAATTCGGGCTTCTTGGCCCAA
1 CAAGTGTTTAAACAATGATCTTTAACCCACTTTATCAAATCCGGGCTTCTTGGCCCAA
81817325 AACCCCTAAT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 55 1.00
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (59 bp):
CAAGTGTTTAAACAATGATCTTTAACCCACTTTATCAAATCCGGGCTTCTTGGCCCAAT
Found at i:81817834 original size:27 final size:27
Alignment explanation
Indices: 81817799--81817876 Score: 81
Period size: 27 Copynumber: 2.9 Consensus size: 27
81817789 GGGCATATTC
81817799 GTCATTTTACCATTAAGGGGTATTACG
1 GTCATTTTACCATTAAGGGGTATTACG
* *
81817826 GTCACTTTACC-CTATAGGGGCT-TTACG
1 GTCATTTTACCATTA-AGGGG-TATTACG
*
81817853 GTCTTTTTACCTATT-AGGGGTATT
1 GTCATTTTACC-ATTAAGGGGTATT
81817877 TTAGTCATTT
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
26 3 0.07
27 36 0.88
28 1 0.02
29 1 0.02
ACGTcount: A:0.21, C:0.18, G:0.22, T:0.40
Consensus pattern (27 bp):
GTCATTTTACCATTAAGGGGTATTACG
Found at i:81817955 original size:27 final size:28
Alignment explanation
Indices: 81817925--81818002 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 28
81817915 ACAAACCAAG
81817925 GGTATTTCAGTAATTTTGTAAAA-CAAT
1 GGTATTTCAGTAATTTTGTAAAAGCAAT
*
81817952 GGTATTTCTA-AAATTTT-TAGAAAGTCAAT
1 GGTATTTC-AGTAATTTTGTA-AAAG-CAAT
**
81817981 GGTATTTTTGTAATTTTGTAAA
1 GGTATTTCAGTAATTTTGTAAA
81818003 TCAGGGGTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
26 2 0.05
27 17 0.41
28 1 0.02
29 19 0.46
30 2 0.05
ACGTcount: A:0.35, C:0.05, G:0.15, T:0.45
Consensus pattern (28 bp):
GGTATTTCAGTAATTTTGTAAAAGCAAT
Found at i:81818121 original size:53 final size:54
Alignment explanation
Indices: 81817894--81818131 Score: 176
Period size: 54 Copynumber: 4.4 Consensus size: 54
81817884 TTTCATCCTA
* * * * * ** *
81817894 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAAA
1 CAAGGGTATTTTGGTAATTTTACAAACTAAGGGCATTTTGGTAATTTTGTAAAC
* ** * * * * * *
81817948 CAATGGTATTTCT-AAAATTTTTAGAAAGTCAATGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAA-TTTTACAAACT-AAGGGCATTTTGGTAATTTTGTAAAC
* * * * *** *
81818004 CAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTTGGTAGTTTCACAGAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAAGGGCATTTTGGTAATTTTGTAAAC
*
81818058 C-AGTGGTATTTTGGTAATTTT-CAAACTACGGGCATTTTGGTAATTTTGTAAAC
1 CAAG-GGTATTTTGGTAATTTTACAAACTAAGGGCATTTTGGTAATTTTGTAAAC
*
81818111 CAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
81818132 TTAAACCGAA
Statistics
Matches: 141, Mismatches: 37, Indels: 13
0.74 0.19 0.07
Matches are distributed among these distances:
53 42 0.30
54 49 0.35
55 17 0.12
56 33 0.23
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAACTAAGGGCATTTTGGTAATTTTGTAAAC
Done.