Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 246 of 322
Found at i:81818136 original size:27 final size:27
Alignment explanation
Indices: 81817894--81818138 Score: 138
Period size: 27 Copynumber: 9.0 Consensus size: 27
81817884 TTTCATCCTA
* * * **
81817894 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
** *
81817921 CAAGGGTATTTCAGTAATTTTGTAAAA
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* ** *
81817948 CAATGGTATTTCT-AAAATTTT-TAGAAAGT
1 CAAGGGTATTT-TGGTAATTTTGT--AAA-C
* * *
81817977 CAATGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* ** *
81818004 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* * *** *
81818031 TAAGGGTATTTTGGTAGTTTCACAGAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
*
81818058 C-AGTGGTATTTTGGTAATTTT-CAAAC
1 CAAG-GGTATTTTGGTAATTTTGTAAAC
* * *
81818084 TACGGGCATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* *
81818111 CAAGGGTATTTTAGTAATTTTTTAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
81818138 C
1 C
81818139 GAATGTAAAA
Statistics
Matches: 170, Mismatches: 39, Indels: 18
0.75 0.17 0.08
Matches are distributed among these distances:
26 23 0.14
27 122 0.72
28 7 0.04
29 17 0.10
30 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTGTAAAC
Found at i:81818182 original size:54 final size:54
Alignment explanation
Indices: 81818124--81818253 Score: 161
Period size: 54 Copynumber: 2.4 Consensus size: 54
81818114 GGGTATTTTA
* * *
81818124 GTAATTTTTTAAACCGAATGTAAAATAGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAACCGAAGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACG
** * * *
81818178 GTAATTCTATAAATTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAACCGAAGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACG
* * *
81818232 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTATAAACCGAAGGTA
81818254 CTTTGGTAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 66 1.00
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.32
Consensus pattern (54 bp):
GTAATTCTATAAACCGAAGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACG
Found at i:81818264 original size:27 final size:27
Alignment explanation
Indices: 81818143--81818253 Score: 186
Period size: 27 Copynumber: 4.1 Consensus size: 27
81818133 TAAACCGAAT
*
81818143 GTAAAATAGTAATTCTATAAATCGAGG
1 GTAAAATGGTAATTCTATAAATCGAGG
* *
81818170 GTAAAACGGTAATTCTATAAATTGAGG
1 GTAAAATGGTAATTCTATAAATCGAGG
81818197 GTAAAATGGTAATTCTATAAATCGAGG
1 GTAAAATGGTAATTCTATAAATCGAGG
*
81818224 GTAAAATGGTAATTCTGTAAATCGAGG
1 GTAAAATGGTAATTCTATAAATCGAGG
81818251 GTA
1 GTA
81818254 CTTTGGTAAT
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 78 1.00
ACGTcount: A:0.41, C:0.07, G:0.23, T:0.30
Consensus pattern (27 bp):
GTAAAATGGTAATTCTATAAATCGAGG
Found at i:81818272 original size:27 final size:27
Alignment explanation
Indices: 81817981--81818292 Score: 146
Period size: 27 Copynumber: 11.6 Consensus size: 27
81817971 GAAAGTCAAT
* *
81817981 GGTATTTTTGTAATTTTGTAAATC-AGG
1 GGTATTTTGGTAATTTTATAAATCGA-G
* **
81818008 GGTATTTTGGTAATTTTACAAATTAAG
1 GGTATTTTGGTAATTTTATAAATCGAG
* * * * *
81818035 GGTATTTTGGTAGTTTCACAGA-CCAG
1 GGTATTTTGGTAATTTTATAAATCGAG
* *
81818061 TGGTATTTTGGTAATTTT-CAAA-CTACG
1 -GGTATTTTGGTAATTTTATAAATCGA-G
* * * *
81818088 GGCATTTTGGTAATTTTGTAAACCAAG
1 GGTATTTTGGTAATTTTATAAATCGAG
* * * *
81818115 GGTATTTTAGTAATTTTTTAAACCGAA
1 GGTATTTTGGTAATTTTATAAATCGAG
* *** * *
81818142 TGTAAAATAGTAATTCTATAAATCGAG
1 GGTATTTTGGTAATTTTATAAATCGAG
**** * *
81818169 GGTAAAACGGTAATTCTATAAATTGAG
1 GGTATTTTGGTAATTTTATAAATCGAG
*** *
81818196 GGTAAAATGGTAATTCTATAAATCGAG
1 GGTATTTTGGTAATTTTATAAATCGAG
*** * *
81818223 GGTAAAATGGTAATTCTGTAAATCGAG
1 GGTATTTTGGTAATTTTATAAATCGAG
* * *
81818250 GGTACTTTGGTAATTTTACAAATTGAG
1 GGTATTTTGGTAATTTTATAAATCGAG
** *
81818277 GACATTTTAGTAATTT
1 GGTATTTTGGTAATTT
81818293 GGTAAACTAA
Statistics
Matches: 233, Mismatches: 47, Indels: 10
0.80 0.16 0.03
Matches are distributed among these distances:
26 23 0.10
27 207 0.89
28 3 0.01
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTATAAATCGAG
Found at i:81818290 original size:81 final size:81
Alignment explanation
Indices: 81818118--81818291 Score: 177
Period size: 81 Copynumber: 2.1 Consensus size: 81
81818108 AACCAAGGGT
* * *
81818118 ATTTTAGTAATTTTTTAAACCGAATGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAAT
1 ATTTTAGTAATTCTATAAACCGAAGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAAT
* **
81818183 TCTATAAATTGAGGGT
66 TCTACAAATTGAGGAC
*** * * * * * ****
81818199 AAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTACTTTGGTAAT
1 ATTTTAGTAATTCTATAAACCGAAGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAAT
*
81818264 TTTACAAATTGAGGAC
66 TCTACAAATTGAGGAC
81818280 ATTTTAGTAATT
1 ATTTTAGTAATT
81818292 TGGTAAACTA
Statistics
Matches: 70, Mismatches: 23, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
81 70 1.00
ACGTcount: A:0.38, C:0.07, G:0.19, T:0.36
Consensus pattern (81 bp):
ATTTTAGTAATTCTATAAACCGAAGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAAT
TCTACAAATTGAGGAC
Found at i:81818777 original size:59 final size:59
Alignment explanation
Indices: 81818685--81818801 Score: 216
Period size: 59 Copynumber: 2.0 Consensus size: 59
81818675 CCAGCTTCGC
*
81818685 ATCCACTCTTATGTTAGCTTCCCGATGTGGGATCCTTCCAACATCAGAGTTTAAATTCT
1 ATCCACTCTTATGTTAGCTTCCCGACGTGGGATCCTTCCAACATCAGAGTTTAAATTCT
*
81818744 ATCCACTCTTATGTTAGCTTCTCGACGTGGGATCCTTCCAACATCAGAGTTTAAATTC
1 ATCCACTCTTATGTTAGCTTCCCGACGTGGGATCCTTCCAACATCAGAGTTTAAATTC
81818802 AACACCAACT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 56 1.00
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.35
Consensus pattern (59 bp):
ATCCACTCTTATGTTAGCTTCCCGACGTGGGATCCTTCCAACATCAGAGTTTAAATTCT
Found at i:81820548 original size:54 final size:54
Alignment explanation
Indices: 81820475--81820581 Score: 205
Period size: 54 Copynumber: 2.0 Consensus size: 54
81820465 AACAAACAGT
*
81820475 GAATAACACAGTGTCAGTACAATCTGGGCCAAAGCCCTATTCAGTAACAGTACG
1 GAATAACACAGTGCCAGTACAATCTGGGCCAAAGCCCTATTCAGTAACAGTACG
81820529 GAATAACACAGTGCCAGTACAATCTGGGCCAAAGCCCTATTCAGTAACAGTAC
1 GAATAACACAGTGCCAGTACAATCTGGGCCAAAGCCCTATTCAGTAACAGTAC
81820582 AGTCTGGGCC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.36, C:0.25, G:0.20, T:0.20
Consensus pattern (54 bp):
GAATAACACAGTGCCAGTACAATCTGGGCCAAAGCCCTATTCAGTAACAGTACG
Found at i:81820927 original size:24 final size:23
Alignment explanation
Indices: 81820886--81820957 Score: 72
Period size: 25 Copynumber: 3.0 Consensus size: 23
81820876 ACTTTATCAT
**
81820886 ATAACTAGAGGCCTAGCCTCTTTTA
1 ATAACT-GAGGCAAAGCC-CTTTTA
*
81820911 ATAACTGAGGCAAAGCCCTTTTTC
1 ATAACTGAGGCAAAGCCC-TTTTA
*
81820935 ATAAACTGGGGCAAAGCCCTTTT
1 AT-AACTGAGGCAAAGCCCTTTT
81820958 CGGTAAACTG
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
23 1 0.02
24 19 0.46
25 21 0.51
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (23 bp):
ATAACTGAGGCAAAGCCCTTTTA
Found at i:81820947 original size:25 final size:26
Alignment explanation
Indices: 81820913--81820982 Score: 99
Period size: 25 Copynumber: 2.8 Consensus size: 26
81820903 CTCTTTTAAT
*
81820913 AACTGAGGCAAAGCCCTTTTTC-ATA
1 AACTGGGGCAAAGCCCTTTTTCGATA
*
81820938 AACTGGGGCAAAGCCC-TTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTTCGATA
*
81820963 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
81820983 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
24 5 0.12
25 32 0.80
26 3 0.08
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (26 bp):
AACTGGGGCAAAGCCCTTTTTCGATA
Found at i:81820958 original size:24 final size:24
Alignment explanation
Indices: 81820900--81820982 Score: 96
Period size: 25 Copynumber: 3.4 Consensus size: 24
81820890 CTAGAGGCCT
* *
81820900 AGCCTCTTTTAAT-AACTGAGGCAA
1 AGCC-CTTTTCATAAACTGGGGCAA
81820924 AGCCCTTTTTCATAAACTGGGGCAA
1 AGCCC-TTTTCATAAACTGGGGCAA
* *
81820949 AGCCCTTTTCGGTAAACTGGGGCAT
1 AGCCCTTTTC-ATAAACTGGGGCAA
81820974 AGCCCTTTT
1 AGCCCTTTT
81820983 AGCACTTCCT
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
23 1 0.02
24 15 0.29
25 36 0.69
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTCATAAACTGGGGCAA
Found at i:81821854 original size:27 final size:27
Alignment explanation
Indices: 81821792--81821869 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
81821782 GGGCATATTC
* *
81821792 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCCTATAGGGGTATTACG
*
81821819 GTCACTTTACCCTATAGGGGCT-TTACG
1 GTCATTTTACCCTATAGGGG-TATTACG
*
81821846 GTCTTTTTA-CCTATTAGGGGTATT
1 GTCATTTTACCCTA-TAGGGGTATT
81821870 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 5 0.12
27 37 0.86
28 1 0.02
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGTATTACG
Found at i:81822040 original size:27 final size:27
Alignment explanation
Indices: 81821900--81822029 Score: 188
Period size: 27 Copynumber: 4.8 Consensus size: 27
81821890 GGGTATTTTA
* * *
81821900 GTAATTTTGTAAATTGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
81821927 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
81821954 GTAATTCTGTAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * *
81821981 GTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
81822008 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
81822030 CTTTGGTAAT
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 91 1.00
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:81822040 original size:54 final size:54
Alignment explanation
Indices: 81821900--81822029 Score: 215
Period size: 54 Copynumber: 2.4 Consensus size: 54
81821890 GGGTATTTTA
* * * *
81821900 GTAATTTTGTAAATTGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAACG
81821954 GTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAACG
*
81822008 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTGTAAATTGAGGGTA
81822030 CTTTGGTAAT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 71 1.00
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (54 bp):
GTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAACG
Found at i:81822066 original size:81 final size:81
Alignment explanation
Indices: 81821894--81822067 Score: 177
Period size: 81 Copynumber: 2.1 Consensus size: 81
81821884 CTACAAGGGT
* * ** *
81821894 ATTTTAGTAATTTTGTAAATTGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGGTAAT
1 ATTTTAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAAT
** **
81821959 TCTGTAAATTGAGGGT
66 TCTACAAATTGAGGAC
*** * * ****
81821975 AAAATGGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTACTTTGGTAAT
1 ATTTTAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAAT
*
81822040 TTTACAAATTGAGGAC
66 TCTACAAATTGAGGAC
81822056 ATTTTAGTAATT
1 ATTTTAGTAATT
81822068 TGGTAAACTA
Statistics
Matches: 70, Mismatches: 23, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
81 70 1.00
ACGTcount: A:0.37, C:0.07, G:0.21, T:0.35
Consensus pattern (81 bp):
ATTTTAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAAT
TCTACAAATTGAGGAC
Found at i:81824301 original size:40 final size:40
Alignment explanation
Indices: 81823346--81824287 Score: 1785
Period size: 40 Copynumber: 23.6 Consensus size: 40
81823336 ATGATAACCA
*
81823346 GGCTAAGTCCCGAAGGCATTTGTGCGGGTTACTATTTTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
*
81823386 GGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
81823426 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
81823466 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
81823506 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
81823546 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
81823586 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
81823626 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
81823666 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
81823706 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
81823746 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
81823786 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
81823826 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
81823866 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
81823906 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
81823946 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
81823986 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
81824026 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
81824066 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
81824106 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
*
81824146 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
* * *
81824186 GGCTAAGTCCCGAAGGTATTTGTGCGAGTTGCTATTTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
* * ***
81824226 GGCTAAGTCCCGAAGGCAATTGTGAGAGTTACTATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
81824266 GGCTAAGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
81824288 AGTGAGTAGC
Statistics
Matches: 889, Mismatches: 13, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 889 1.00
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.32
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCG
Found at i:81832093 original size:80 final size:80
Alignment explanation
Indices: 81831960--81832137 Score: 252
Period size: 80 Copynumber: 2.2 Consensus size: 80
81831950 CGGATGATAA
* * **
81831960 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATTTTCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATACTCGGGCTAAGTCCCGAAGGCATTTG
* * *
81832025 TGCGAGTTGCTATTT
66 AGCGAGTAGCTATAT
81832040 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACT-GGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAT-ACTCGGGCTAAGTCCCGAAGGCATTT
81832104 GAGCGAGTAGCTATAT
65 GAGCGAGTAGCTATAT
**
81832120 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
81832138 TACTTGGTTG
Statistics
Matches: 88, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
79 14 0.16
80 73 0.83
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATACTCGGGCTAAGTCCCGAAGGCATTTG
AGCGAGTAGCTATAT
Found at i:81832118 original size:40 final size:40
Alignment explanation
Indices: 81831956--81832137 Score: 224
Period size: 40 Copynumber: 4.6 Consensus size: 40
81831946 TACTCGGATG
*
81831956 ATAACCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*** *
81831996 ATTTTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
** *
81832036 ATTTCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
81832076 ATAACTGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
81832116 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
81832138 TACTTGGTTG
Statistics
Matches: 124, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 16 0.13
40 108 0.87
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:81835091 original size:30 final size:31
Alignment explanation
Indices: 81835020--81835097 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
81835010 CTCGACACAT
81835020 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
81835051 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
81835082 ACT-GGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
81835098 ACTGTAAGCG
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
30 13 0.28
31 34 0.72
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:81835331 original size:24 final size:23
Alignment explanation
Indices: 81835290--81835361 Score: 72
Period size: 25 Copynumber: 3.0 Consensus size: 23
81835280 GCTTTATCAT
**
81835290 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACT-GAGGCAAAGCC-CTTTTA
*
81835315 ATAACTGAGGCAAAGCCCTTTTTG
1 ATAACTGAGGCAAAGCCC-TTTTA
*
81835339 ATAAACTGGGGCAAAGCCCTTTT
1 AT-AACTGAGGCAAAGCCCTTTT
81835362 CGGTAAACTG
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
23 1 0.02
24 19 0.46
25 21 0.51
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (23 bp):
ATAACTGAGGCAAAGCCCTTTTA
Found at i:81835345 original size:25 final size:25
Alignment explanation
Indices: 81835317--81835386 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
81835307 CTCTTTTAAT
* *
81835317 AACTGAGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
81835342 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
81835367 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
81835387 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:81836226 original size:27 final size:26
Alignment explanation
Indices: 81836196--81836273 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 26
81836186 GGGCATGTTT
81836196 GTCATTTTACCATATAGGGGTATTACG
1 GTCATTTTACC-TATAGGGGTATTACG
* *
81836223 GTCACTTTATCCTACAGGGGCT-TTACG
1 GTCATTTTA-CCTATAGGGG-TATTACG
*
81836250 GTCTTTTTACCTATTAGGGGTATT
1 GTCATTTTACCTA-TAGGGGTATT
81836274 TTAGTCATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
26 5 0.12
27 34 0.81
28 3 0.07
ACGTcount: A:0.21, C:0.18, G:0.22, T:0.40
Consensus pattern (26 bp):
GTCATTTTACCTATAGGGGTATTACG
Found at i:81836344 original size:27 final size:27
Alignment explanation
Indices: 81836314--81836543 Score: 160
Period size: 27 Copynumber: 8.4 Consensus size: 27
81836304 GTAAATCTAC
*
81836314 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
*
81836341 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTT-TAGTAATTTTGT
* *
81836367 AAAAAGTCAAGGGTATTTTTGTAATTTTGT
1 --AAA-CCAAGGGTATTTTAGTAATTTTGT
* * * **
81836397 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTTAGTAATTTTGT
*** * ***
81836424 AAATTGAGGGTATTTTGGTAATTTCAC
1 AAACCAAGGGTATTTTAGTAATTTTGT
* * **
81836451 AGACC-AGTGGTATTTTGGTAATTTTAC
1 AAACCAAG-GGTATTTTAGTAATTTTGT
* * *
81836478 AAACTAGGGGTATTTTGGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
**
81836505 AAACCAATAGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
*
81836532 AAACCGAGGGTA
1 AAACCAAGGGTA
81836544 AAACAGTAAT
Statistics
Matches: 165, Mismatches: 30, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
26 3 0.02
27 135 0.82
28 9 0.05
29 17 0.10
30 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTTAGTAATTTTGT
Found at i:81836518 original size:54 final size:54
Alignment explanation
Indices: 81836301--81836529 Score: 226
Period size: 54 Copynumber: 4.2 Consensus size: 54
81836291 CAAGGGTGTA
* * * **
81836301 TTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATT
1 TTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTGTAAACCAATGGTATT
* * * * * **
81836355 TCT-ATAATTTTTAAAAAGTCAAGGGTATTTTTGTAATTTTGTAAATCAGGGGTATT
1 T-TGGTAA-TTTTACAAACT-AAGGGTATTTTGGTAATTTTGTAAACCAATGGTATT
* * *** * *
81836411 TTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAGACCAGTGGTATT
1 TTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTGTAAACCAATGGTATT
* *
81836465 TTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAATAGTATT
1 TTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTGTAAACCAATGGTATT
*
81836519 TTAGTAATTTT
1 TTGGTAATTTT
81836530 GTAAACCGAG
Statistics
Matches: 139, Mismatches: 32, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
54 87 0.63
55 17 0.12
56 35 0.25
ACGTcount: A:0.31, C:0.08, G:0.18, T:0.42
Consensus pattern (54 bp):
TTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTGTAAACCAATGGTATT
Found at i:81836518 original size:81 final size:81
Alignment explanation
Indices: 81836378--81836528 Score: 187
Period size: 81 Copynumber: 1.9 Consensus size: 81
81836368 AAAAGTCAAG
* ** *** * *
81836378 GGTATTTTTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGT
1 GGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCAAGAGTATTTTAGT
81836443 AATTTCACAGACCAGT
66 AATTTCACAGACCAGT
** *
81836459 GGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTGTAAACCAATAGTATTTTAG
1 GGTATTTTGGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAACCAAGAGTATTTTAG
81836523 TAATTT
65 TAATTT
81836529 TGTAAACCGA
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
80 1 0.02
81 57 0.98
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.44
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCAAGAGTATTTTAGT
AATTTCACAGACCAGT
Found at i:81836662 original size:27 final size:27
Alignment explanation
Indices: 81836522--81836647 Score: 189
Period size: 27 Copynumber: 4.7 Consensus size: 27
81836512 TAGTATTTTA
* * *
81836522 GTAATTTTGTAAACCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
81836549 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
81836576 GTAATTCTGCAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
81836603 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
81836630 GTAATTCTGTAAATCGAG
1 GTAATTCTGTAAATCGAG
81836648 AGTACTTTGG
Statistics
Matches: 88, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.38, C:0.10, G:0.24, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:81836688 original size:81 final size:81
Alignment explanation
Indices: 81836516--81836689 Score: 186
Period size: 81 Copynumber: 2.1 Consensus size: 81
81836506 AACCAATAGT
* * *
81836516 ATTTTAGTAATTTTGTAAACCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAAT
1 ATTTTAGTAATTCTATAAACCGAGGGTAAAACAGTAATTCTGTAAATCGAGAGTAAAACGGTAAT
* * **
81836581 TCTGCAAATTGAGGGT
66 TCTACAAATTAAGGAC
*** * * * ****
81836597 AAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGAGTACTTTGGTAAT
1 ATTTTAGTAATTCTATAAACCGAGGGTAAAACAGTAATTCTGTAAATCGAGAGTAAAACGGTAAT
*
81836662 TTTACAAATTAAGGAC
66 TCTACAAATTAAGGAC
81836678 ATTTTAGTAATT
1 ATTTTAGTAATT
81836690 TGGTAAACTA
Statistics
Matches: 71, Mismatches: 22, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
81 71 1.00
ACGTcount: A:0.37, C:0.09, G:0.21, T:0.33
Consensus pattern (81 bp):
ATTTTAGTAATTCTATAAACCGAGGGTAAAACAGTAATTCTGTAAATCGAGAGTAAAACGGTAAT
TCTACAAATTAAGGAC
Found at i:81837774 original size:31 final size:31
Alignment explanation
Indices: 81837739--81837803 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
81837729 AAAATGATCA
*
81837739 AAATTAATCAATATTTATTATAAAATTAAGT
1 AAATTAATCAATACTTATTATAAAATTAAGT
81837770 AAATTAATCAATACTTATTATAAAATTAAGT
1 AAATTAATCAATACTTATTATAAAATTAAGT
81837801 AAA
1 AAA
81837804 AGTCAACATG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.38
Consensus pattern (31 bp):
AAATTAATCAATACTTATTATAAAATTAAGT
Found at i:81840326 original size:40 final size:40
Alignment explanation
Indices: 81840275--81840742 Score: 686
Period size: 40 Copynumber: 11.7 Consensus size: 40
81840265 GCTACTCTCT
81840275 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
* * * *
81840315 AAATGCCTTCGGGACTTAGCTCGGATATAATAACTCACAC
1 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
*
81840355 AAATGCCTTCGAGACTTAGCCCGGTTATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
* * * *
81840395 AAATGCCTTCGGGACTTAGCTCGGATATAATAACTCACAC
1 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
*
81840435 AAATGCCTTCGAGACTTAGCCCGGTTATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
* * * *
81840475 AAATGCCTTCGGGACTTAGCTCGGATATAATAACTCACAC
1 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
*
81840515 AAATGCCTTCGAGACTTAGCCCGGTTATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
* * * *
81840555 AAATGCCTTCGGGACTTAGCTCGGATATAATAACTCACAC
1 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
*
81840595 AAATGCCTTCGAGACTTAGCCCGGTTATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
* *
81840635 AAATGCCTTCAGGACTTAGCCCGATTATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
* * * *
81840675 AAATGCCTTCGGGACTTAGCCTGG-AATTAGTCACTAGCAC
1 AAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCAC
81840715 AAATGCCTTCGGGACTTAGCCCGGTTAT
1 AAATGCCTTCGGGACTTAGCCCGGTTAT
81840743 CATCCGAATA
Statistics
Matches: 376, Mismatches: 50, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
39 1 0.00
40 374 0.99
41 1 0.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
Found at i:81840737 original size:80 final size:80
Alignment explanation
Indices: 81840275--81840734 Score: 798
Period size: 80 Copynumber: 5.8 Consensus size: 80
81840265 GCTACTCTCT
*
81840275 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCTCGGA
1 AAATGCCTTCGAGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCTCGGA
81840340 TATAATAACTCACAC
66 TATAATAACTCACAC
81840355 AAATGCCTTCGAGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCTCGGA
1 AAATGCCTTCGAGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCTCGGA
81840420 TATAATAACTCACAC
66 TATAATAACTCACAC
81840435 AAATGCCTTCGAGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCTCGGA
1 AAATGCCTTCGAGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCTCGGA
81840500 TATAATAACTCACAC
66 TATAATAACTCACAC
81840515 AAATGCCTTCGAGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCTCGGA
1 AAATGCCTTCGAGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCTCGGA
81840580 TATAATAACTCACAC
66 TATAATAACTCACAC
* *
81840595 AAATGCCTTCGAGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCAGGACTTAGC-CCGA
1 AAATGCCTTCGAGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCTCGGA
* *
81840659 TTATAGTAACTCGCAC
66 -TATAATAACTCACAC
* * * * *
81840675 AAATGCCTTCGGGACTTAGCCTGG-AATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 AAATGCCTTCGAGACTTAGCCCGGTTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
81840735 CCGGTTATCA
Statistics
Matches: 367, Mismatches: 11, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
79 4 0.01
80 363 0.99
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (80 bp):
AAATGCCTTCGAGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCTCGGA
TATAATAACTCACAC
Found at i:81843051 original size:13 final size:14
Alignment explanation
Indices: 81843025--81843053 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
81843015 ACTAGCGATG
81843025 AATTAAACCATTAT
1 AATTAAACCATTAT
81843039 AATTAAA-CATTAT
1 AATTAAACCATTAT
81843052 AA
1 AA
81843054 ATATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:81848142 original size:9 final size:9
Alignment explanation
Indices: 81848128--81848267 Score: 76
Period size: 9 Copynumber: 15.6 Consensus size: 9
81848118 TATATATTAC
*
81848128 GTAAGTTAA
1 GTAAGTTAT
*
81848137 GTAAGTTTT
1 GTAAGTTAT
81848146 GTAAGTTAT
1 GTAAGTTAT
81848155 GTAAGTTAT
1 GTAAGTTAT
*
81848164 GAAAGTTAT
1 GTAAGTTAT
*
81848173 G-ATA-TGAT
1 GTA-AGTTAT
* *
81848181 ATACATTTAT
1 GTA-AGTTAT
*
81848191 GTAAGATAT
1 GTAAGTTAT
81848200 GTAAGTTAT
1 GTAAGTTAT
* *
81848209 GATATGATAT
1 G-TAAGTTAT
* *
81848219 G-CATTTAT
1 GTAAGTTAT
81848227 GTAAAG-TAT
1 GT-AAGTTAT
81848236 GTAAGTTAT
1 GTAAGTTAT
*
81848245 GATATATTTAT
1 G-TA-AGTTAT
81848256 GT-A-TTAT
1 GTAAGTTAT
81848263 GTAAG
1 GTAAG
81848268 GTATATAAAT
Statistics
Matches: 99, Mismatches: 21, Indels: 22
0.70 0.15 0.15
Matches are distributed among these distances:
7 6 0.06
8 13 0.13
9 58 0.59
10 16 0.16
11 6 0.06
ACGTcount: A:0.36, C:0.01, G:0.19, T:0.43
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:81848191 original size:36 final size:35
Alignment explanation
Indices: 81848151--81848249 Score: 153
Period size: 36 Copynumber: 2.7 Consensus size: 35
81848141 GTTTTGTAAG
*
81848151 TTATGTAAGTTATGAAAGTTATGATATGATATACAT
1 TTATGTAAG-TATGTAAGTTATGATATGATATACAT
*
81848187 TTATGTAAGATATGTAAGTTATGATATGATATGCAT
1 TTATGTAAG-TATGTAAGTTATGATATGATATACAT
81848223 TTATGTAAAGTATGTAAGTTATGATAT
1 TTATGT-AAGTATGTAAGTTATGATAT
81848250 ATTTATGTAT
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
36 56 0.95
37 3 0.05
ACGTcount: A:0.37, C:0.02, G:0.18, T:0.42
Consensus pattern (35 bp):
TTATGTAAGTATGTAAGTTATGATATGATATACAT
Found at i:81848263 original size:36 final size:36
Alignment explanation
Indices: 81848151--81848267 Score: 125
Period size: 36 Copynumber: 3.2 Consensus size: 36
81848141 GTTTTGTAAG
* * **
81848151 TTATGTAAGTTATGAAAGTTATGATATGA-TATACA
1 TTATGTAAGATATGTAAGTTATGATATGATTATGTA
*
81848186 TTTATGTAAGATATGTAAGTTATGATATGA-TATGCA
1 -TTATGTAAGATATGTAAGTTATGATATGATTATGTA
81848222 TTTATGTAA-AGTATGTAAGTTATGATAT-ATTTATGTA
1 -TTATGTAAGA-TATGTAAGTTATGATATGA-TTATGTA
81848259 TTATGTAAG
1 TTATGTAAG
81848268 GTATATAAAT
Statistics
Matches: 73, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
35 2 0.03
36 66 0.90
37 5 0.07
ACGTcount: A:0.37, C:0.02, G:0.18, T:0.44
Consensus pattern (36 bp):
TTATGTAAGATATGTAAGTTATGATATGATTATGTA
Found at i:81850359 original size:12 final size:12
Alignment explanation
Indices: 81850342--81850366 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
81850332 ACACCAAGCT
81850342 TCAAAGACATAA
1 TCAAAGACATAA
81850354 TCAAAGACATAA
1 TCAAAGACATAA
81850366 T
1 T
81850367 GAACACATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.16, G:0.08, T:0.20
Consensus pattern (12 bp):
TCAAAGACATAA
Found at i:81850600 original size:62 final size:62
Alignment explanation
Indices: 81850525--81850648 Score: 230
Period size: 62 Copynumber: 2.0 Consensus size: 62
81850515 CACTATAGAC
81850525 CCCCTACGAATTGAGTTCGATCCCACTTTAAAGCAAAGCATAAAAAAGAAATCCTAAGTATT
1 CCCCTACGAATTGAGTTCGATCCCACTTTAAAGCAAAGCATAAAAAAGAAATCCTAAGTATT
* *
81850587 CCCCTACGAATTGAGTTCGATCCCACTTTAAAGTAAAGCATAAAAAAGAAATCCTATGTATT
1 CCCCTACGAATTGAGTTCGATCCCACTTTAAAGCAAAGCATAAAAAAGAAATCCTAAGTATT
81850649 GTTCAATCCT
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.40, C:0.22, G:0.13, T:0.26
Consensus pattern (62 bp):
CCCCTACGAATTGAGTTCGATCCCACTTTAAAGCAAAGCATAAAAAAGAAATCCTAAGTATT
Found at i:81853275 original size:28 final size:29
Alignment explanation
Indices: 81853184--81853290 Score: 112
Period size: 29 Copynumber: 3.7 Consensus size: 29
81853174 TGCATGTGAT
* * *
81853184 TTGGGCTTAAGGGGCCATATGAATATGAA
1 TTGGGCCTAATGGGCCATATGAATAAGAA
* * *
81853213 TTGGTCCTGATGGGCCGA-ATGAATGAGAA
1 TTGGGCCTAATGGGCC-ATATGAATAAGAA
*
81853242 TTGGGCCTAATGGGCCATATAAATAAG-A
1 TTGGGCCTAATGGGCCATATGAATAAGAA
81853270 TTGGGCC-AAGTGGGCCATATG
1 TTGGGCCTAA-TGGGCCATATG
81853291 CATGTATGCA
Statistics
Matches: 64, Mismatches: 11, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
27 2 0.03
28 19 0.30
29 42 0.66
30 1 0.02
ACGTcount: A:0.29, C:0.14, G:0.32, T:0.25
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATGAATAAGAA
Found at i:81854620 original size:28 final size:27
Alignment explanation
Indices: 81854565--81854677 Score: 122
Period size: 27 Copynumber: 4.1 Consensus size: 27
81854555 AGCATGGCTG
* * *
81854565 CCAGAACAGATAA-TATGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
81854591 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
81854619 CCAGAACAGA-AATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * *
81854646 TCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAA-TTGTGGCAGAGCCA
81854674 CCAG
1 CCAG
81854678 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
26 8 0.11
27 33 0.45
28 31 0.42
29 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:81854651 original size:55 final size:54
Alignment explanation
Indices: 81854565--81854677 Score: 140
Period size: 55 Copynumber: 2.1 Consensus size: 54
81854555 AGCATGGCTG
*
81854565 CCAGAACAGATAATATGACAGAGTCACCAGATACAGATAA-TCGTGGCAGAGCCA
1 CCAGAACAGATAATATGACAGAGCCACCAGAT-CAGATAATTCGTGGCAGAGCCA
* * * *
81854619 CCAGAACAGA-AATATGTGGCAGAGCCATCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAATA--TGACAGAGCCACCAGATCAGATAATTCGTGGCAGAGCCA
81854674 CCAG
1 CCAG
81854678 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
53 4 0.08
54 17 0.33
55 30 0.59
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATAATATGACAGAGCCACCAGATCAGATAATTCGTGGCAGAGCCA
Found at i:81862475 original size:28 final size:27
Alignment explanation
Indices: 81862419--81862531 Score: 122
Period size: 27 Copynumber: 4.1 Consensus size: 27
81862409 CAGCATGGCT
* *
81862419 ACCAGAACAGATAA-TGTGACAGAGTC
1 ACCAGAACAGATAATTGTGGCAGAGCC
*
81862445 ACCAGATACAGATAATCGTGGCAGAGCC
1 ACCAGA-ACAGATAATTGTGGCAGAGCC
* *
81862473 ACCAGAACATA-AATATGTGGTAGAGCC
1 ACCAGAACAGATAAT-TGTGGCAGAGCC
* *
81862500 ACCAGATCAGATAATTTGTGGCATAGCC
1 ACCAGAACAGATAA-TTGTGGCAGAGCC
81862528 ACCA
1 ACCA
81862532 AGACGCTTCC
Statistics
Matches: 72, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
26 9 0.12
27 31 0.43
28 31 0.43
29 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (27 bp):
ACCAGAACAGATAATTGTGGCAGAGCC
Found at i:81863934 original size:24 final size:24
Alignment explanation
Indices: 81863907--81863953 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
81863897 CTAGATTTCC
**
81863907 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
81863931 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
81863954 CTCCTGACAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.38, G:0.02, T:0.36
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:81865616 original size:16 final size:17
Alignment explanation
Indices: 81865592--81865630 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
81865582 CTAATCTCCA
*
81865592 TTTTATATTTC-TTTTT
1 TTTTGTATTTCATTTTT
81865608 TTTTGTATTTCATTTTT
1 TTTTGTATTTCATTTTT
*
81865625 ATTTGT
1 TTTTGT
81865631 TATCAATGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.13, C:0.05, G:0.05, T:0.77
Consensus pattern (17 bp):
TTTTGTATTTCATTTTT
Found at i:81865629 original size:17 final size:16
Alignment explanation
Indices: 81865597--81865630 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
81865587 CTCCATTTTA
*
81865597 TATTTCTTTTTTTTTG
1 TATTTCTTTTTATTTG
81865613 TATTTCATTTTTATTTG
1 TATTTC-TTTTTATTTG
81865630 T
1 T
81865631 TATCAATGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.12, C:0.06, G:0.06, T:0.76
Consensus pattern (16 bp):
TATTTCTTTTTATTTG
Found at i:81865644 original size:19 final size:20
Alignment explanation
Indices: 81865620--81865661 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
81865610 TTGTATTTCA
81865620 TTTTTATTT-GTTATCAATG
1 TTTTTATTTAGTTATCAATG
*
81865639 TTTTTATTTATTTATCAATG
1 TTTTTATTTAGTTATCAATG
81865659 TTT
1 TTT
81865662 ATTTTAAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.21, C:0.05, G:0.07, T:0.67
Consensus pattern (20 bp):
TTTTTATTTAGTTATCAATG
Found at i:81865955 original size:7 final size:7
Alignment explanation
Indices: 81865943--81865985 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
81865933 ACTAATTAAT
81865943 CTAAACC
1 CTAAACC
81865950 CTAAACTC
1 CTAAAC-C
*
81865958 CTAATCC
1 CTAAACC
*
81865965 CTAATCC
1 CTAAACC
*
81865972 CTAATCC
1 CTAAACC
81865979 CTAAACC
1 CTAAACC
81865986 TTGAATCCTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
7 27 0.82
8 6 0.18
ACGTcount: A:0.35, C:0.42, G:0.00, T:0.23
Consensus pattern (7 bp):
CTAAACC
Found at i:81865976 original size:14 final size:15
Alignment explanation
Indices: 81865943--81865984 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
81865933 ACTAATTAAT
*
81865943 CTAAACCCTAAACTC
1 CTAATCCCTAAACTC
*
81865958 CTAATCCCTAATC-C
1 CTAATCCCTAAACTC
81865972 CTAATCCCTAAAC
1 CTAATCCCTAAAC
81865985 CTTGAATCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 13 0.54
15 11 0.46
ACGTcount: A:0.36, C:0.40, G:0.00, T:0.24
Consensus pattern (15 bp):
CTAATCCCTAAACTC
Found at i:81866087 original size:15 final size:15
Alignment explanation
Indices: 81866060--81866097 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
81866050 TAAACCCCAA
81866060 CCTTAAA-CCATAAT
1 CCTTAAACCCATAAT
81866074 CCTTAAACCCATAAT
1 CCTTAAACCCATAAT
*
81866089 CCATAAACC
1 CCTTAAACC
81866098 TTAAAATAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 7 0.32
15 15 0.68
ACGTcount: A:0.42, C:0.34, G:0.00, T:0.24
Consensus pattern (15 bp):
CCTTAAACCCATAAT
Found at i:81866132 original size:22 final size:22
Alignment explanation
Indices: 81866068--81866147 Score: 67
Period size: 22 Copynumber: 3.7 Consensus size: 22
81866058 AACCTTAAAC
*
81866068 CATAATCCTTAAACCCATAA-T
1 CATAAACCTTAAACCCATAACT
**
81866089 CCATAAACCTTAAA-ATAGTAACT
1 -CATAAACCTTAAACCCA-TAACT
*
81866112 CATAAACCTTAAACCCCTAAC-
1 CATAAACCTTAAACCCATAACT
* *
81866133 CATATACCCTAAACC
1 CATAAACCTTAAACC
81866148 GTAAACCGTA
Statistics
Matches: 47, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
21 14 0.30
22 32 0.68
23 1 0.02
ACGTcount: A:0.44, C:0.31, G:0.01, T:0.24
Consensus pattern (22 bp):
CATAAACCTTAAACCCATAACT
Found at i:81866145 original size:21 final size:22
Alignment explanation
Indices: 81866107--81866147 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
81866097 CTTAAAATAG
*
81866107 TAACTCATAAACCTTAAACCCC
1 TAACTCATAAACCCTAAACCCC
*
81866129 TAAC-CATATACCCTAAACC
1 TAACTCATAAACCCTAAACC
81866148 GTAAACCGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.41, C:0.37, G:0.00, T:0.22
Consensus pattern (22 bp):
TAACTCATAAACCCTAAACCCC
Found at i:81866271 original size:7 final size:7
Alignment explanation
Indices: 81866259--81866391 Score: 88
Period size: 7 Copynumber: 18.7 Consensus size: 7
81866249 ACTAATTAAT
81866259 CTAAACC
1 CTAAACC
81866266 CTAAACCC
1 CTAAA-CC
*
81866274 CTAATCC
1 CTAAACC
*
81866281 CTAATCC
1 CTAAACC
81866288 CTAAACC
1 CTAAACC
* *
81866295 TTAAATC
1 CTAAACC
*
81866302 CTAAAAC
1 CTAAACC
*
81866309 ATAAACC
1 CTAAACC
81866316 CTAAACCC
1 CTAAA-CC
*
81866324 CTAACCC
1 CTAAACC
* *
81866331 CTGACCC
1 CTAAACC
* *
81866338 CTGATCC
1 CTAAACC
81866345 CTAAACC
1 CTAAACC
*
81866352 TTAAACC
1 CTAAACC
81866359 CT-AACC
1 CTAAACC
81866365 CTTAAACC
1 C-TAAACC
* *
81866373 ATAATCC
1 CTAAACC
*
81866380 ATAAACC
1 CTAAACC
*
81866387 TTAAA
1 CTAAA
81866392 ATAGTAACTC
Statistics
Matches: 102, Mismatches: 20, Indels: 8
0.78 0.15 0.06
Matches are distributed among these distances:
6 5 0.05
7 81 0.79
8 16 0.16
ACGTcount: A:0.39, C:0.38, G:0.02, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:81866304 original size:14 final size:14
Alignment explanation
Indices: 81866259--81866456 Score: 76
Period size: 14 Copynumber: 13.9 Consensus size: 14
81866249 ACTAATTAAT
*
81866259 CTAAACCCTAAACCC
1 CTAAACCATAAA-CC
* * *
81866274 CTAATCCCTAATCC
1 CTAAACCATAAACC
* *
81866288 CTAAACCTTAAATC
1 CTAAACCATAAACC
*
81866302 CTAAAACATAAACC
1 CTAAACCATAAACC
* *
81866316 CTAAACCCCTAACCC
1 CTAAA-CCATAAACC
* * * * *
81866331 CTGACCCCTGATCC
1 CTAAACCATAAACC
*
81866345 CTAAACCTTAAACC
1 CTAAACCATAAACC
* *
81866359 CTAACCCTTAAACC
1 CTAAACCATAAACC
* *
81866373 ATAATCCATAAACC
1 CTAAACCATAAACC
*
81866387 TTAAA--ATAGTAACTC
1 CTAAACCATA--AAC-C
* *
81866402 ATAAACCTTAAACC
1 CTAAACCATAAACC
* * *
81866416 CTTAACTATATACC
1 CTAAACCATAAACC
* *
81866430 CTAAATCGTAAACC
1 CTAAACCATAAACC
* *
81866444 GTAAACCGTAAAC
1 CTAAACCATAAAC
81866457 TATAATGATA
Statistics
Matches: 136, Mismatches: 41, Indels: 13
0.72 0.22 0.07
Matches are distributed among these distances:
12 3 0.02
14 104 0.76
15 27 0.20
17 2 0.01
ACGTcount: A:0.40, C:0.34, G:0.03, T:0.22
Consensus pattern (14 bp):
CTAAACCATAAACC
Found at i:81866370 original size:21 final size:21
Alignment explanation
Indices: 81866346--81866461 Score: 65
Period size: 21 Copynumber: 5.5 Consensus size: 21
81866336 CCCTGATCCC
* * *
81866346 TAAACCTTAAACCCTAACCCT
1 TAAACCATAAACCATAAACCT
*
81866367 TAAACCATAATCCATAAACCT
1 TAAACCATAAACCATAAACCT
81866388 TAAA--ATAGTAACTCATAAACCT
1 TAAACCATA--AAC-CATAAACCT
* * * * *
81866410 TAAACCCTTAACTATATACCC
1 TAAACCATAAACCATAAACCT
* * * *
81866431 TAAATCGTAAACCGTAAACCG
1 TAAACCATAAACCATAAACCT
*
81866452 TAAACTATAA
1 TAAACCATAA
81866462 TGATAATTAA
Statistics
Matches: 70, Mismatches: 20, Indels: 10
0.70 0.20 0.10
Matches are distributed among these distances:
19 3 0.04
21 50 0.71
22 16 0.23
24 1 0.01
ACGTcount: A:0.45, C:0.27, G:0.03, T:0.25
Consensus pattern (21 bp):
TAAACCATAAACCATAAACCT
Found at i:81866510 original size:296 final size:296
Alignment explanation
Indices: 81866058--81866839 Score: 1461
Period size: 296 Copynumber: 2.7 Consensus size: 296
81866048 TTTAAACCCC
* *
81866058 AACCTTAAACCATAATCCTTAAACCCATAATCCATAAACCTTAAAATAGTAACTCATAAACCTTA
1 AACCTTAAACCCTAACCCTTAAA-CCATAATCCATAAACCTTAAAATAGTAACTCATAAACCTTA
* *
81866123 AACCCCTAACCATATA-CC-----C-TAAACCGTAAACCGTAAACTATAATGATAATTAATTCAA
65 AACCCTTAACTATATACCCTAAATCGTAAACCGTAAACCGTAAACTATAATGATAATTAATTCAA
81866181 TATTTTAAAATTAATACTATCTCTTTTACAATTATATAAGAAAATATTTATCATATAAATTAAAA
130 TATTTTAAAATTAATACTATCTCTTTTACAATTATATAAGAAAATATTTATCATATAAATTAAAA
81866246 AAAACTAATTAATCTAAACCCTAAACCCCTAATCCCTAATCCCTAAACCTTAAATCCTAAAACAT
195 AAAACTAATTAATCTAAACCCTAAACCCCTAATCCCTAATCCCTAAACCTTAAATCCTAAAACAT
81866311 AAACCCTAAACCCCTAACCCCTGACCCCTGATCCCTA
260 AAACCCTAAACCCCTAACCCCTGACCCCTGATCCCTA
81866348 AACCTTAAACCCTAACCCTTAAACCATAATCCATAAACCTTAAAATAGTAACTCATAAACCTTAA
1 AACCTTAAACCCTAACCCTTAAACCATAATCCATAAACCTTAAAATAGTAACTCATAAACCTTAA
81866413 ACCCTTAACTATATACCCTAAATCGTAAACCGTAAACCGTAAACTATAATGATAATTAATTCAAT
66 ACCCTTAACTATATACCCTAAATCGTAAACCGTAAACCGTAAACTATAATGATAATTAATTCAAT
81866478 ATTTTAAAATTAATACTATCTCTTTTACAATTATATAAGAAAATATTTATCATATAAATTAAAAA
131 ATTTTAAAATTAATACTATCTCTTTTACAATTATATAAGAAAATATTTATCATATAAATTAAAAA
81866543 AAACTAATTAATCTAAACCCTAAACCCCTAATCCCTAATCCCTAAACCTTAAATCCTAAAACATA
196 AAACTAATTAATCTAAACCCTAAACCCCTAATCCCTAATCCCTAAACCTTAAATCCTAAAACATA
81866608 AACCCTAAACCCCTAACCCCTGACCCCTGATCCCTA
261 AACCCTAAACCCCTAACCCCTGACCCCTGATCCCTA
81866644 AACCTTAAACCCTAACCCTTAAACCATAATCCATAAACCTTAAAATAGTAACTCATAAACCTTAA
1 AACCTTAAACCCTAACCCTTAAACCATAATCCATAAACCTTAAAATAGTAACTCATAAACCTTAA
81866709 ACCCTTAACTATATACCCTAAATCGTAAACCGTAAACCGTAAACTATAATGATAATTAATTCAAT
66 ACCCTTAACTATATACCCTAAATCGTAAACCGTAAACCGTAAACTATAATGATAATTAATTCAAT
*
81866774 ATTTTAAAATTAATACTATCTCTTTTACAATTATATAAGAAAATATTTAACATATAAATTAAAAA
131 ATTTTAAAATTAATACTATCTCTTTTACAATTATATAAGAAAATATTTATCATATAAATTAAAAA
81866839 A
196 A
81866840 CAATCAGTCA
Statistics
Matches: 480, Mismatches: 5, Indels: 8
0.97 0.01 0.02
Matches are distributed among these distances:
289 55 0.11
290 23 0.05
295 1 0.00
296 401 0.84
ACGTcount: A:0.45, C:0.24, G:0.03, T:0.29
Consensus pattern (296 bp):
AACCTTAAACCCTAACCCTTAAACCATAATCCATAAACCTTAAAATAGTAACTCATAAACCTTAA
ACCCTTAACTATATACCCTAAATCGTAAACCGTAAACCGTAAACTATAATGATAATTAATTCAAT
ATTTTAAAATTAATACTATCTCTTTTACAATTATATAAGAAAATATTTATCATATAAATTAAAAA
AAACTAATTAATCTAAACCCTAAACCCCTAATCCCTAATCCCTAAACCTTAAATCCTAAAACATA
AACCCTAAACCCCTAACCCCTGACCCCTGATCCCTA
Found at i:81866567 original size:7 final size:7
Alignment explanation
Indices: 81866555--81866687 Score: 88
Period size: 7 Copynumber: 18.7 Consensus size: 7
81866545 ACTAATTAAT
81866555 CTAAACC
1 CTAAACC
81866562 CTAAACCC
1 CTAAA-CC
*
81866570 CTAATCC
1 CTAAACC
*
81866577 CTAATCC
1 CTAAACC
81866584 CTAAACC
1 CTAAACC
* *
81866591 TTAAATC
1 CTAAACC
*
81866598 CTAAAAC
1 CTAAACC
*
81866605 ATAAACC
1 CTAAACC
81866612 CTAAACCC
1 CTAAA-CC
*
81866620 CTAACCC
1 CTAAACC
* *
81866627 CTGACCC
1 CTAAACC
* *
81866634 CTGATCC
1 CTAAACC
81866641 CTAAACC
1 CTAAACC
*
81866648 TTAAACC
1 CTAAACC
81866655 CT-AACC
1 CTAAACC
81866661 CTTAAACC
1 C-TAAACC
* *
81866669 ATAATCC
1 CTAAACC
*
81866676 ATAAACC
1 CTAAACC
*
81866683 TTAAA
1 CTAAA
81866688 ATAGTAACTC
Statistics
Matches: 102, Mismatches: 20, Indels: 8
0.78 0.15 0.06
Matches are distributed among these distances:
6 5 0.05
7 81 0.79
8 16 0.16
ACGTcount: A:0.39, C:0.38, G:0.02, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:81866600 original size:14 final size:14
Alignment explanation
Indices: 81866555--81866752 Score: 76
Period size: 14 Copynumber: 13.9 Consensus size: 14
81866545 ACTAATTAAT
*
81866555 CTAAACCCTAAACCC
1 CTAAACCATAAA-CC
* * *
81866570 CTAATCCCTAATCC
1 CTAAACCATAAACC
* *
81866584 CTAAACCTTAAATC
1 CTAAACCATAAACC
*
81866598 CTAAAACATAAACC
1 CTAAACCATAAACC
* *
81866612 CTAAACCCCTAACCC
1 CTAAA-CCATAAACC
* * * * *
81866627 CTGACCCCTGATCC
1 CTAAACCATAAACC
*
81866641 CTAAACCTTAAACC
1 CTAAACCATAAACC
* *
81866655 CTAACCCTTAAACC
1 CTAAACCATAAACC
* *
81866669 ATAATCCATAAACC
1 CTAAACCATAAACC
*
81866683 TTAAA--ATAGTAACTC
1 CTAAACCATA--AAC-C
* *
81866698 ATAAACCTTAAACC
1 CTAAACCATAAACC
* * *
81866712 CTTAACTATATACC
1 CTAAACCATAAACC
* *
81866726 CTAAATCGTAAACC
1 CTAAACCATAAACC
* *
81866740 GTAAACCGTAAAC
1 CTAAACCATAAAC
81866753 TATAATGATA
Statistics
Matches: 136, Mismatches: 41, Indels: 13
0.72 0.22 0.07
Matches are distributed among these distances:
12 3 0.02
14 104 0.76
15 27 0.20
17 2 0.01
ACGTcount: A:0.40, C:0.34, G:0.03, T:0.22
Consensus pattern (14 bp):
CTAAACCATAAACC
Found at i:81866666 original size:21 final size:21
Alignment explanation
Indices: 81866642--81866757 Score: 65
Period size: 21 Copynumber: 5.5 Consensus size: 21
81866632 CCCTGATCCC
* * *
81866642 TAAACCTTAAACCCTAACCCT
1 TAAACCATAAACCATAAACCT
*
81866663 TAAACCATAATCCATAAACCT
1 TAAACCATAAACCATAAACCT
81866684 TAAA--ATAGTAACTCATAAACCT
1 TAAACCATA--AAC-CATAAACCT
* * * * *
81866706 TAAACCCTTAACTATATACCC
1 TAAACCATAAACCATAAACCT
* * * *
81866727 TAAATCGTAAACCGTAAACCG
1 TAAACCATAAACCATAAACCT
*
81866748 TAAACTATAA
1 TAAACCATAA
81866758 TGATAATTAA
Statistics
Matches: 70, Mismatches: 20, Indels: 10
0.70 0.20 0.10
Matches are distributed among these distances:
19 3 0.04
21 50 0.71
22 16 0.23
24 1 0.01
ACGTcount: A:0.45, C:0.27, G:0.03, T:0.25
Consensus pattern (21 bp):
TAAACCATAAACCATAAACCT
Found at i:81869692 original size:207 final size:207
Alignment explanation
Indices: 81869450--81870067 Score: 1146
Period size: 207 Copynumber: 3.0 Consensus size: 207
81869440 TAAACTTGGC
**
81869450 ACCATAATCATTTAATTTAATATAATTCAATTAATTCACTAAATTTAAGGTTCAAATATAAATTA
1 ACCATAATCATTTAATTTAATATAATTCAATTAATTCACTAAATTTAACTTTCAAATATAAATTA
81869515 CAGCATTATTGCTGTATTATTATCATACCAACTTACATACTTTCAACACCTCGGAAATCATAATG
66 CAGCATTATTGCTGTATTATTATCATACCAACTTACATACTTTCAACACCTCGGAAATCATAATG
**
81869580 AATATATCAATTTTACATTAAAACATGCATAAATTAATGCTTAGTATACCCATGAACTTACTTCG
131 AATATATCAATTTTACATTAAAACATGCATAAATTAATGCTTAGTATACATATGAACTTACTTCG
81869645 ATACTAAAAAAA
196 ATACTAAAAAAA
81869657 ACCATAATCATTTAATTTAATATAATTCAATTAATTCACTAAATTTAACTTTCAAATATAAATTA
1 ACCATAATCATTTAATTTAATATAATTCAATTAATTCACTAAATTTAACTTTCAAATATAAATTA
81869722 CAGCATTATTGCTGTATTATTATCATACCAACTTACATACTTTCAACACCTCGGAAATCATAATG
66 CAGCATTATTGCTGTATTATTATCATACCAACTTACATACTTTCAACACCTCGGAAATCATAATG
81869787 AATATATCAATTTTACATTAAAACATGCATAAATTAATGCTTAGTATACATATGAACTTACTTCG
131 AATATATCAATTTTACATTAAAACATGCATAAATTAATGCTTAGTATACATATGAACTTACTTCG
81869852 ATACTAAAAAAA
196 ATACTAAAAAAA
81869864 ACCATAATCATTTAATTTAATATAATTCAATTAATTCACTAAATTTAACTTTCAAATATAAATTA
1 ACCATAATCATTTAATTTAATATAATTCAATTAATTCACTAAATTTAACTTTCAAATATAAATTA
*
81869929 CAGCATTATTGCTGTATTATTATCATACAAACTTACATACTTTCAACACCTCGGAAATCATAATG
66 CAGCATTATTGCTGTATTATTATCATACCAACTTACATACTTTCAACACCTCGGAAATCATAATG
* * * * *
81869994 AATATATCAATTTTACATTGAAACATGCATAAATTAATGCTTATTATACATGTGAACTTACCTCA
131 AATATATCAATTTTACATTAAAACATGCATAAATTAATGCTTAGTATACATATGAACTTACTTCG
81870059 ATACTAAAA
196 ATACTAAAA
81870068 GGTCATTTTA
Statistics
Matches: 401, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
207 401 1.00
ACGTcount: A:0.42, C:0.16, G:0.06, T:0.36
Consensus pattern (207 bp):
ACCATAATCATTTAATTTAATATAATTCAATTAATTCACTAAATTTAACTTTCAAATATAAATTA
CAGCATTATTGCTGTATTATTATCATACCAACTTACATACTTTCAACACCTCGGAAATCATAATG
AATATATCAATTTTACATTAAAACATGCATAAATTAATGCTTAGTATACATATGAACTTACTTCG
ATACTAAAAAAA
Found at i:81871269 original size:95 final size:93
Alignment explanation
Indices: 81871170--81871355 Score: 250
Period size: 95 Copynumber: 2.0 Consensus size: 93
81871160 AGTATTAGTG
* * *
81871170 GCGTTTAT-TAAAAAGCGCCGCTAAAGGTGTACCTATAGTGGCATTTTTTTAAAAAA-AGGTCAC
1 GCGTTTATCT-AAAAGCGCCGCTAAAGGTGTACCTATAGCGGC-GTTTTTTAAAAAACA--CCAC
*
81871233 TAAAGCCACTAAAAGCTCAATATATAACGACA
62 TAAAGCCACTAAAAGCTCAATATAGAACGACA
* *
81871265 GCGTTTATCTGAAAGCGCCGCTAAAGGTGTACCTATAGCGGCGTTTTTTAAAAAACACCGCTAAA
1 GCGTTTATCTAAAAGCGCCGCTAAAGGTGTACCTATAGCGGCGTTTTTTAAAAAACACCACTAAA
* *
81871330 TCCATTAAAAGCTCAATATAGAACGA
66 GCCACTAAAAGCTCAATATAGAACGA
81871356 TGACATTTTG
Statistics
Matches: 81, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
93 29 0.36
94 12 0.15
95 39 0.48
96 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (93 bp):
GCGTTTATCTAAAAGCGCCGCTAAAGGTGTACCTATAGCGGCGTTTTTTAAAAAACACCACTAAA
GCCACTAAAAGCTCAATATAGAACGACA
Found at i:81871522 original size:41 final size:40
Alignment explanation
Indices: 81871417--81871524 Score: 171
Period size: 40 Copynumber: 2.7 Consensus size: 40
81871407 CAAGCATTAA
*
81871417 CGGCGTTTTTTAAAAAGCACCGCTAATACTCGATCTATAG
1 CGGCGTTTTTTAAAAAGCGCCGCTAATACTCGATCTATAG
*
81871457 CGGCGTTTTTTAAAAAGCGTCGCTAATACTCGATCTATAG
1 CGGCGTTTTTTAAAAAGCGCCGCTAATACTCGATCTATAG
* *
81871497 CGGCGTTTTTTCAGAAAGTGCCGCTAAT
1 CGGCGTTTTTT-AAAAAGCGCCGCTAAT
81871525 GCCACTGAAG
Statistics
Matches: 62, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
40 49 0.79
41 13 0.21
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.31
Consensus pattern (40 bp):
CGGCGTTTTTTAAAAAGCGCCGCTAATACTCGATCTATAG
Found at i:81874802 original size:28 final size:29
Alignment explanation
Indices: 81874757--81874858 Score: 84
Period size: 30 Copynumber: 3.5 Consensus size: 29
81874747 CATGCATAAA
* *
81874757 ATAGCCATAGAGGTGTC-CAT-ACAGATAG
1 ATAGCCATAAAGGCGTCACATAACA-ATAG
* *
81874785 ATAGCCACAAAGGCGTCCACATAACATTAG
1 ATAGCCATAAAGGCGT-CACATAACAATAG
*
81874815 ATAGCCATAAAGGCGTCTAGATAAC-ATCAG
1 ATAGCCATAAAGGCGTC-ACATAACAAT-AG
* *
81874845 AAAGCCACAAAGGC
1 ATAGCCATAAAGGC
81874859 ATCCAAACAC
Statistics
Matches: 60, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
28 13 0.22
29 3 0.05
30 41 0.68
31 3 0.05
ACGTcount: A:0.40, C:0.23, G:0.21, T:0.17
Consensus pattern (29 bp):
ATAGCCATAAAGGCGTCACATAACAATAG
Found at i:81874818 original size:30 final size:30
Alignment explanation
Indices: 81874782--81874863 Score: 110
Period size: 30 Copynumber: 2.7 Consensus size: 30
81874772 TCCATACAGA
81874782 TAGATAGCCACAAAGGCGTCCACATAACAT
1 TAGATAGCCACAAAGGCGTCCACATAACAT
* * *
81874812 TAGATAGCCATAAAGGCGTCTAGATAACAT
1 TAGATAGCCACAAAGGCGTCCACATAACAT
* * *
81874842 CAGAAAGCCACAAAGGCATCCA
1 TAGATAGCCACAAAGGCGTCCA
81874864 AACACATATA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.41, C:0.24, G:0.18, T:0.16
Consensus pattern (30 bp):
TAGATAGCCACAAAGGCGTCCACATAACAT
Found at i:81893157 original size:36 final size:36
Alignment explanation
Indices: 81893110--81893182 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
81893100 TTAACAATGC
*
81893110 TCTATGAGTTAATACTACAGGGGATTTAGTATAAGG
1 TCTATGAGTTAATACTACAAGGGATTTAGTATAAGG
81893146 TCTATGAGTTAATACTACAAGGGATTTAGTATAAGG
1 TCTATGAGTTAATACTACAAGGGATTTAGTATAAGG
81893182 T
1 T
81893183 TCACAGGAGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.34, C:0.08, G:0.23, T:0.34
Consensus pattern (36 bp):
TCTATGAGTTAATACTACAAGGGATTTAGTATAAGG
Found at i:81907343 original size:37 final size:37
Alignment explanation
Indices: 81907284--81907392 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
81907274 AACTCAGACG
* *
81907284 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
81907321 AAATCTCCACACGTAGCCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
81907358 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
81907393 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:81907662 original size:48 final size:48
Alignment explanation
Indices: 81907538--81907770 Score: 353
Period size: 48 Copynumber: 4.8 Consensus size: 48
81907528 GCACATCGCC
* * *
81907538 TACATATTTCACACTAGCAATTTGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
81907588 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
* *
81907636 TACATATTTCGCATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
81907684 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
81907732 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
81907771 TGCATGTTCA
Statistics
Matches: 172, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
48 130 0.76
49 2 0.01
50 40 0.23
ACGTcount: A:0.30, C:0.26, G:0.08, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:81907819 original size:47 final size:47
Alignment explanation
Indices: 81907740--81907932 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
81907730 CATACATATT
* * * *
81907740 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
81907787 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
81907834 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
81907881 TCACATTGGCCATTC-GCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
81907927 TCACAT
1 TCACAT
81907933 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
46 33 0.25
47 99 0.75
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:81913236 original size:43 final size:43
Alignment explanation
Indices: 81913183--81913310 Score: 141
Period size: 44 Copynumber: 3.0 Consensus size: 43
81913173 CATAGGATTC
*
81913183 CGATATGTGATTTCATGTAAGACCATGTTTGGGACATTGGCAT
1 CGATATGTGATTTCATGTAAGACCATGTCTGGGACATTGGCAT
* * * * * *
81913226 TGATTTGTGATTTGCGTGTGAA-ACCCTGTCTGGGATAGTGGCAT
1 CGATATGTGATTT-CATGT-AAGACCATGTCTGGGACATTGGCAT
* * *
81913270 CGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGC
1 CGATATGTGATTTCATGTAAGACCATGTCTGGGACATTGGC
81913311 GTTGTATAAG
Statistics
Matches: 66, Mismatches: 16, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
42 2 0.03
43 30 0.45
44 32 0.48
45 2 0.03
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.33
Consensus pattern (43 bp):
CGATATGTGATTTCATGTAAGACCATGTCTGGGACATTGGCAT
Found at i:81915665 original size:27 final size:27
Alignment explanation
Indices: 81915623--81915769 Score: 154
Period size: 27 Copynumber: 5.4 Consensus size: 27
81915613 ACCCTTAATC
*
81915623 GGGTAAAATAACCGAAATATCCCCATA
1 GGGTAAAATGACCGAAATATCCCCATA
* *
81915650 TGGTAAAATGATCGAAATA-CCGCCATA
1 GGGTAAAATGACCGAAATATCC-CCATA
* * * *
81915677 GGGTCAAATCACCCAAATATCCCTATA
1 GGGTAAAATGACCGAAATATCCCCATA
* *
81915704 GGGTAAAATGACTGAAATACCCCCATA
1 GGGTAAAATGACCGAAATATCCCCATA
* * *
81915731 GGGTAAAATGACTGTAAT-TCCCCTGTA
1 GGGTAAAATGACCGAAATATCCCC-ATA
81915758 GGGTAAAATGAC
1 GGGTAAAATGAC
81915770 TATTTTGCCC
Statistics
Matches: 99, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
26 6 0.06
27 91 0.92
28 2 0.02
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.22
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATATCCCCATA
Found at i:81915721 original size:54 final size:55
Alignment explanation
Indices: 81915623--81915770 Score: 176
Period size: 54 Copynumber: 2.7 Consensus size: 55
81915613 ACCCTTAATC
* * *
81915623 GGGTAAAATAACCGAAATATCCCCATATGGTAAAATGA-TCGAAATACCGCCATA
1 GGGTAAAATAACCGAAATATCCCTATAGGGTAAAATGACTCGAAATACCCCCATA
* * *
81915677 GGGTCAAATCACCCAAATATCCCTATAGGGTAAAATGACT-GAAATACCCCCATA
1 GGGTAAAATAACCGAAATATCCCTATAGGGTAAAATGACTCGAAATACCCCCATA
* * * *
81915731 GGGTAAAATGACTGTAAT-TCCCCTGTAGGGTAAAATGACT
1 GGGTAAAATAACCGAAATAT-CCCTATAGGGTAAAATGACT
81915771 ATTTTGCCCT
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
53 1 0.01
54 78 0.98
55 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.22
Consensus pattern (55 bp):
GGGTAAAATAACCGAAATATCCCTATAGGGTAAAATGACTCGAAATACCCCCATA
Found at i:81915792 original size:27 final size:27
Alignment explanation
Indices: 81915762--81915835 Score: 130
Period size: 27 Copynumber: 2.7 Consensus size: 27
81915752 CCTGTAGGGT
81915762 AAAATGACTATTTTGCCCTTGTGAGGC
1 AAAATGACTATTTTGCCCTTGTGAGGC
*
81915789 AAAATGATTATTTTGCCCTTGTGAGGC
1 AAAATGACTATTTTGCCCTTGTGAGGC
*
81915816 AAAATGACTGTTTTGCCCTT
1 AAAATGACTATTTTGCCCTT
81915836 ATATGGTAAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (27 bp):
AAAATGACTATTTTGCCCTTGTGAGGC
Found at i:81916340 original size:34 final size:35
Alignment explanation
Indices: 81916275--81916359 Score: 120
Period size: 34 Copynumber: 2.5 Consensus size: 35
81916265 TTTATTGAGG
81916275 TGGGCTTAGGCCCAGACTGTTTACTGATACTAAAA
1 TGGGCTTAGGCCCAGACTGTTTACTGATACTAAAA
* *
81916310 TGGGCTAAGGCCCAGACTG-TTACT-ATTACTAATA
1 TGGGCTTAGGCCCAGACTGTTTACTGA-TACTAAAA
*
81916344 TAGGCTTAGGCCCAGA
1 TGGGCTTAGGCCCAGA
81916360 ATGTATTCGC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
33 1 0.02
34 26 0.58
35 18 0.40
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (35 bp):
TGGGCTTAGGCCCAGACTGTTTACTGATACTAAAA
Found at i:81933869 original size:16 final size:16
Alignment explanation
Indices: 81933848--81933879 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
81933838 TATTATTTGG
81933848 TATGTATGTAAATATA
1 TATGTATGTAAATATA
*
81933864 TATGTATGTGAATATA
1 TATGTATGTAAATATA
81933880 CTTGTGTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.16, T:0.44
Consensus pattern (16 bp):
TATGTATGTAAATATA
Found at i:81945804 original size:46 final size:46
Alignment explanation
Indices: 81945681--81945807 Score: 218
Period size: 46 Copynumber: 2.8 Consensus size: 46
81945671 TGTAACCTGC
* * * *
81945681 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
81945727 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
81945773 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
81945808 AATGCCCAAA
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:81948244 original size:30 final size:30
Alignment explanation
Indices: 81948200--81948288 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
81948190 CAAAGATAAT
81948200 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
81948229 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
81948259 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
81948289 CGATATTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:81948248 original size:15 final size:15
Alignment explanation
Indices: 81948200--81948279 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
81948190 CAAAGATAAT
*
81948200 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
81948214 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
81948229 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
81948244 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
81948259 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
81948274 AAGAAA
1 AAGAAA
81948280 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:81948288 original size:15 final size:15
Alignment explanation
Indices: 81948211--81948288 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
81948201 AGAAAACCGA
81948211 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
81948226 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
81948240 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
81948255 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
81948271 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
81948286 ATA
1 ATA
81948289 CGATATTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:81951354 original size:46 final size:46
Alignment explanation
Indices: 81951234--81951358 Score: 205
Period size: 46 Copynumber: 2.7 Consensus size: 46
81951224 TGTAACCTGC
* * * * *
81951234 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
81951280 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
81951326 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
81951359 TGGATGCCCA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
Found at i:81957457 original size:17 final size:17
Alignment explanation
Indices: 81957435--81957467 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
81957425 ATTAGTTTAA
81957435 TTAAATTATTTTCTCAT
1 TTAAATTATTTTCTCAT
81957452 TTAAATTATTTTCTCA
1 TTAAATTATTTTCTCA
81957468 ACCCAATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.30, C:0.12, G:0.00, T:0.58
Consensus pattern (17 bp):
TTAAATTATTTTCTCAT
Found at i:81962624 original size:29 final size:29
Alignment explanation
Indices: 81962579--81962679 Score: 125
Period size: 29 Copynumber: 3.5 Consensus size: 29
81962569 TAGGCCTAAC
* *
81962579 GGGCCATATAAATGTGATTTGGGCTTAAT
1 GGGCCATATACAGGTGATTTGGGCTTAAT
* *
81962608 GGGCTATATACAGGTGATTTGGGCCTAAT
1 GGGCCATATACAGGTGATTTGGGCTTAAT
*
81962637 GGGCCATATGA-ATGTGA-TTGGGCTTAAT
1 GGGCCATAT-ACAGGTGATTTGGGCTTAAT
*
81962665 GGGCCAAATACAGGT
1 GGGCCATATACAGGT
81962680 ATGTGAATTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
27 1 0.02
28 21 0.34
29 38 0.62
30 1 0.02
ACGTcount: A:0.27, C:0.13, G:0.31, T:0.30
Consensus pattern (29 bp):
GGGCCATATACAGGTGATTTGGGCTTAAT
Found at i:81962635 original size:58 final size:57
Alignment explanation
Indices: 81962571--81962679 Score: 173
Period size: 57 Copynumber: 1.9 Consensus size: 57
81962561 AATTTGACTA
* *
81962571 GGCCTAACGGGCCATATAAATGTGATTTGGGCTTAATGGGCTATATACAGGTGATTTG
1 GGCCTAACGGGCCATATAAATGTGA-TTGGGCTTAATGGGCCAAATACAGGTGATTTG
* *
81962629 GGCCTAATGGGCCATATGAATGTGATTGGGCTTAATGGGCCAAATACAGGT
1 GGCCTAACGGGCCATATAAATGTGATTGGGCTTAATGGGCCAAATACAGGT
81962680 ATGTGAATTC
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
57 24 0.51
58 23 0.49
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (57 bp):
GGCCTAACGGGCCATATAAATGTGATTGGGCTTAATGGGCCAAATACAGGTGATTTG
Found at i:81966887 original size:16 final size:16
Alignment explanation
Indices: 81966861--81966906 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
81966851 TATGGATTAA
*
81966861 CAAAA-GCCGAAATGC
1 CAAAATGCCGAAAAGC
81966876 CAAAATGCCGAAAAGC
1 CAAAATGCCGAAAAGC
* *
81966892 CGAAATGTCGAAAAG
1 CAAAATGCCGAAAAG
81966907 TTGAAAGTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 5 0.19
16 22 0.81
ACGTcount: A:0.48, C:0.22, G:0.22, T:0.09
Consensus pattern (16 bp):
CAAAATGCCGAAAAGC
Found at i:81966903 original size:8 final size:8
Alignment explanation
Indices: 81966866--81966904 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
81966856 ATTAACAAAA
81966866 GCCGAAAT
1 GCCGAAAT
*
81966874 GCCAAAAT
1 GCCGAAAT
*
81966882 GCCGAAAA
1 GCCGAAAT
81966890 GCCGAAAT
1 GCCGAAAT
*
81966898 GTCGAAA
1 GCCGAAA
81966905 AGTTGAAAGT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.44, C:0.23, G:0.23, T:0.10
Consensus pattern (8 bp):
GCCGAAAT
Found at i:81967177 original size:29 final size:29
Alignment explanation
Indices: 81967134--81967274 Score: 185
Period size: 29 Copynumber: 4.9 Consensus size: 29
81967124 ATGAATGTAA
* *
81967134 TTGGGCCTAACGGGCCATATAAATGTGAT
1 TTGGGCCTAATGGGCCATATAAAGGTGAT
* *
81967163 TTGGGCTTAATGGGCCATATACAGGTGAT
1 TTGGGCCTAATGGGCCATATAAAGGTGAT
*
81967192 TTGGGCCTAATGGGCCATATACAGGTGAT
1 TTGGGCCTAATGGGCCATATAAAGGTGAT
* *
81967221 TTGGGCCTAATGGGCCATATGAATGTGA-
1 TTGGGCCTAATGGGCCATATAAAGGTGAT
* * *
81967249 TTGGGCTTAATGGGCCAAATACAGGT
1 TTGGGCCTAATGGGCCATATAAAGGT
81967275 ATGTGAATTT
Statistics
Matches: 99, Mismatches: 13, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
28 21 0.21
29 78 0.79
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATAAAGGTGAT
Found at i:81978858 original size:47 final size:45
Alignment explanation
Indices: 81978790--81978957 Score: 146
Period size: 46 Copynumber: 3.6 Consensus size: 45
81978780 TTTGTGTGCT
* *
81978790 AGTGTAAGACATGTTTAGGACATGCATCGGCCGCATTATGAAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTATGAAAGCC
* *
81978836 AGTGTAAGACCATGTTTGGGACATGGCATC-G-CCATTGA-GACAAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCCATT-ATG--AA-AGCC
* * * *
81978884 AATGTAAGACATGTCTGGGACATACATCGGCCTCGA-GATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-C-ATTATGAAAGCC
*
81978930 ACTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
81978958 ACTACATGAT
Statistics
Matches: 101, Mismatches: 10, Indels: 22
0.76 0.08 0.17
Matches are distributed among these distances:
45 5 0.05
46 44 0.44
47 31 0.31
48 18 0.18
49 2 0.02
50 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCCATTATGAAAGCC
Found at i:81979090 original size:47 final size:47
Alignment explanation
Indices: 81978932--81979147 Score: 217
Period size: 47 Copynumber: 4.6 Consensus size: 47
81978922 TGTAAGCCAC
* * *
81978932 TGTAAGA-CATGTCTGGGACAT-GCATC-AC-T-ACATGATGTGTCAG
1 TGTAAGACCATGTCTAGGACATGGCATCGACTTAACGTGA-GAGTCAG
* ** * *
81978975 TATAAGACCATGTCTAGGACATGGCATCGGCACAGATATGTGGGAGTCAG
1 TGTAAGACCATGTCTAGGACATGGCATC-G-ACTTA-ACGTGAGAGTCAG
*
81979025 TGTAAGACCATGTTTAGGACATGGCATCGACTTAACGTGAGAGTCAG
1 TGTAAGACCATGTCTAGGACATGGCATCGACTTAACGTGAGAGTCAG
* * * * * *
81979072 TGTAAGACCATGTCTAGGACACGGCGTTGACTTAGCGTGAGAGCCAA
1 TGTAAGACCATGTCTAGGACATGGCATCGACTTAACGTGAGAGTCAG
*
81979119 TGTAAGACCATGTCTGGGACATGGCATCG
1 TGTAAGACCATGTCTAGGACATGGCATCG
81979148 GCATTATACC
Statistics
Matches: 141, Mismatches: 24, Indels: 12
0.80 0.14 0.07
Matches are distributed among these distances:
43 6 0.04
44 13 0.09
45 5 0.04
47 76 0.54
48 5 0.04
49 1 0.01
50 32 0.23
51 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (47 bp):
TGTAAGACCATGTCTAGGACATGGCATCGACTTAACGTGAGAGTCAG
Found at i:81980897 original size:79 final size:80
Alignment explanation
Indices: 81980756--81980944 Score: 242
Period size: 79 Copynumber: 2.4 Consensus size: 80
81980746 TATTCGAATG
* *
81980756 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCTTTGGTGC-AAGTGACTAAATCCGGACTAAGATCCGAAGGC
81980821 ATTTGTGCGAGTTACT
65 ATTTGTGCGAGTTACT
* **
81980837 A-ATTCCGGGCTAAG-CCCGAAGGCTTTGGTG-AGAGTTACTAAATCCGGGTTAAG-TCCCGAAG
1 ATA-TCCGGGCTAAGTCCCGAAGGCTTTGGTGCA-AGTGACTAAATCCGGACTAAGAT-CCGAAG
81980898 GCATTTGTGCGAGTTACT
63 GCATTTGTGCGAGTTACT
* *
81980916 ATAACCGGGCTATGTCCCGAAGGCATTTG
1 ATATCCGGGCTAAGTCCCGAAGGC-TTTG
81980945 AGCGAGTAGC
Statistics
Matches: 95, Mismatches: 7, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
78 2 0.02
79 51 0.54
80 26 0.27
81 16 0.17
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCTTTGGTGCAAGTGACTAAATCCGGACTAAGATCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:81980912 original size:40 final size:40
Alignment explanation
Indices: 81980758--81980951 Score: 234
Period size: 40 Copynumber: 4.8 Consensus size: 40
81980748 TTCGAATGAT
* * * *
81980758 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
*
81980799 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
* *
81980839 TTCCGGGCTAAG-CCCGAAGGC-TTTGGTGAGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTT-GTGCGAGTTACTAA
*
81980878 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
81980919 A-CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
81980952 AGCTATATCC
Statistics
Matches: 133, Mismatches: 14, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
38 3 0.02
39 31 0.23
40 67 0.50
41 31 0.23
42 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:81980976 original size:79 final size:79
Alignment explanation
Indices: 81980760--81980977 Score: 223
Period size: 79 Copynumber: 2.7 Consensus size: 79
81980750 CGAATGATAT
* *
81980760 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGT-GACTATATCCGGACTAAGA-TCCGAAGGCAT
1 CCGGGCTAAGTCCCGAAGGC-TTTGTGC-GAGTAG-CTATATCCGGATTAA-ATTCCGAAGGCAT
*
81980823 TTGTGCGAGTTACTAATT
62 TTGTGCGAGTTACTAATA
* * * * *
81980841 CCGGGCTAAG-CCCGAAGGCTTTGGTGAGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCTTT-GTGCGAG-TAGCTATATCCGGATTAAATTCCGAAGGCATTT
81980904 GTGCGAGTTACT-ATAA
64 GTGCGAGTTACTAAT-A
* * *
81980920 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGTAGCTATATCC-GATTAAATTTCGAAGG
1 CCGGGCTAAGTCCCGAAGGC-TTTGTGCGAGTAGCTATATCCGGATTAAATTCCGAAGG
81980978 TATGTGATTC
Statistics
Matches: 113, Mismatches: 16, Indels: 18
0.77 0.11 0.12
Matches are distributed among these distances:
78 2 0.02
79 64 0.57
80 34 0.30
81 13 0.12
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCTTTGTGCGAGTAGCTATATCCGGATTAAATTCCGAAGGCATTTGT
GCGAGTTACTAATA
Found at i:81989069 original size:39 final size:40
Alignment explanation
Indices: 81988964--81989171 Score: 210
Period size: 40 Copynumber: 5.2 Consensus size: 40
81988954 TATTCGAATG
* * * * *
81988964 ATATACGGGCTAAGTCCCAAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACT
*
81989005 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
* *
81989045 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGTGAGTTACT
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
81989084 AAATTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
81989124 ATGA-CCGGGCTATGTCCCGAAGGCATTTGAGTGAG-TAGCT
1 AT-ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
81989164 ATATCCGG
1 ATATCCGG
81989172 TTAAATTCCG
Statistics
Matches: 140, Mismatches: 19, Indels: 17
0.80 0.11 0.10
Matches are distributed among these distances:
39 36 0.26
40 76 0.54
41 27 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:81989174 original size:79 final size:77
Alignment explanation
Indices: 81989002--81989185 Score: 210
Period size: 79 Copynumber: 2.3 Consensus size: 77
81988992 GTGCTAAGTG
* *
81989002 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGG
1 ACTATATCCGG-TTAAG-TCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGG
*
81989067 CATTGGTGTGAGTT
64 CATTGGAGTGAGTT
* * *
81989081 ACTAAATTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATGACCGGGCTATGTCCCGAA
1 ACTATA-TCCGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAA
*
81989145 GGCATTTGAGTGAG-T
62 GGCATTGGAGTGAGTT
*
81989160 AGCTATATCCGGTTAAATTCCGAAGG
1 A-CTATATCCGGTT-AAGTCCGAAGG
81989186 TATGTGATTC
Statistics
Matches: 89, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
78 3 0.03
79 57 0.64
80 29 0.33
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.27
Consensus pattern (77 bp):
ACTATATCCGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCA
TTGGAGTGAGTT
Found at i:82007370 original size:39 final size:40
Alignment explanation
Indices: 82007265--82007472 Score: 235
Period size: 40 Copynumber: 5.2 Consensus size: 40
82007255 TATTCGAAGA
* * * *
82007265 ATATCCAGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACT
* *
82007306 GTATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
* *
82007346 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTCCT
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
82007385 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
82007425 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
82007465 ATATCCGG
1 ATATCCGG
82007473 TTAAATTCCA
Statistics
Matches: 142, Mismatches: 19, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
39 36 0.25
40 79 0.56
41 26 0.18
42 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:82007475 original size:79 final size:79
Alignment explanation
Indices: 82007322--82007476 Score: 215
Period size: 79 Copynumber: 2.0 Consensus size: 79
82007312 GGACTAAGAT
* * *
82007322 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTCCTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAGCGAGTACCTAA
82007387 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
82007401 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAGTAGCT
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAGCGAGTACCT
*
82007465 ATATCC-GGTTAA
64 AAATCCGGGTTAA
82007477 ATTCCAAAGG
Statistics
Matches: 67, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
78 2 0.03
79 39 0.58
80 26 0.39
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAGCGAGTACCTAA
ATCCGGGTTAAGTC
Found at i:82015045 original size:39 final size:39
Alignment explanation
Indices: 82014986--82015062 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
82014976 GTCGAATAGC
* *
82014986 CATCGAAATCGTTTGACGACATCCGAGGTAAGTTTTTGG
1 CATCAAAATCGTTCGACGACATCCGAGGTAAGTTTTTGG
82015025 CATCAAAATCGTTCGACGACATCCGAGGTAAGTTTTTG
1 CATCAAAATCGTTCGACGACATCCGAGGTAAGTTTTTG
82015063 AGTAATAGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.30
Consensus pattern (39 bp):
CATCAAAATCGTTCGACGACATCCGAGGTAAGTTTTTGG
Found at i:82015392 original size:79 final size:80
Alignment explanation
Indices: 82015249--82015460 Score: 254
Period size: 79 Copynumber: 2.7 Consensus size: 80
82015239 TATTCGAATG
* * * ** *
82015249 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCAAAGGC
82015314 ATTTGTGCGAGTTACT
65 ATTTGTGCGAGTTACT
* *
82015330 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAG-TCCCAAAGG
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCAAAGG
82015392 CATTTGTGCGAGTTACT
64 CATTTGTGCGAGTTACT
* * *
82015409 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAA
82015461 ATTCCGAAGG
Statistics
Matches: 113, Mismatches: 13, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
78 1 0.01
79 58 0.51
80 42 0.37
81 12 0.11
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCAAAGGCA
TTTGTGCGAGTTACT
Found at i:82015451 original size:40 final size:40
Alignment explanation
Indices: 82015249--82015456 Score: 253
Period size: 40 Copynumber: 5.2 Consensus size: 40
82015239 TATTCGAATG
* * *
82015249 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACT
*
82015290 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
*
82015330 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACT
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
82015369 AAATCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
82015409 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
82015449 ATATCCGG
1 ATATCCGG
82015457 TTAAATTCCG
Statistics
Matches: 145, Mismatches: 16, Indels: 13
0.83 0.09 0.07
Matches are distributed among these distances:
39 37 0.26
40 79 0.54
41 28 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:82017013 original size:21 final size:21
Alignment explanation
Indices: 82016987--82017036 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
82016977 TGTGGGGCAT
82016987 GGGCGTGTTACCCTTCCACAC
1 GGGCGTGTTACCCTTCCACAC
* **
82017008 GGGCGTGTTACCTTTTTACAC
1 GGGCGTGTTACCCTTCCACAC
82017029 GGGCGTGT
1 GGGCGTGT
82017037 GCCCTGTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.12, C:0.28, G:0.30, T:0.30
Consensus pattern (21 bp):
GGGCGTGTTACCCTTCCACAC
Found at i:82017415 original size:14 final size:14
Alignment explanation
Indices: 82017392--82017426 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
82017382 CAAAAAATTG
82017392 AAAAAA-GAAGTGA
1 AAAAAATGAAGTGA
82017405 AAAAAATGAAGTGA
1 AAAAAATGAAGTGA
82017419 AAGAAAAT
1 AA-AAAAT
82017427 TTTGAGCTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 6 0.30
14 9 0.45
15 5 0.25
ACGTcount: A:0.69, C:0.00, G:0.20, T:0.11
Consensus pattern (14 bp):
AAAAAATGAAGTGA
Found at i:82027342 original size:282 final size:282
Alignment explanation
Indices: 82026829--82027350 Score: 787
Period size: 282 Copynumber: 1.9 Consensus size: 282
82026819 GCTTTAGTTC
* *
82026829 AAAGAGCTGCATCTAGTAATAGAAGGCCCGAATCTAAGGGTAGAGGTGAGGAGGTAGAAAAAGCC
1 AAAGAGCTGAATCTAGTAATAGAAGGCCCGAATCTAAGGGTAGAGGTGAGGAGGCAGAAAAAGCC
* * * *
82026894 TTTTTCCAAATGAAGAATGAGTGGTTTACAGAATTTATAAGAATAAATCTACTGTACAACAACCT
66 TTTTTCCAAATGAAGAATGAGTGGTTTACAGAATTTATAAAAACAAATCTACTATACAAAAACCT
* * * * * *
82026959 CCCCCACCTGCTCCTCAACAAGTTCTAGAGATGCTACAGGGTGCTGAACATTTTAGAATTGGTAA
131 CCCCCACCTGCTCCTCAACAAGTTCCAGAGATGCCACAGGGTGCTAAACATGTTAGAATCGATAA
* *
82027024 GCCTCCAGTGGATAAAGTTCGTAGGTATAGGGCAGAGAAATTTAGGGTTACTTCCAGCAATGATC
196 GCCTCCAGTGGATAAAATTCGTAAGTATAGGGCAGAGAAATTTAGGGTTACTTCCAGCAATGATC
82027089 TAGAGAGAGCAAGCTTCGGTTT
261 TAGAGAGAGCAAGCTTCGGTTT
* * *
82027111 AAAGAGCTGAATCTAGTAGTAGAAGGCCCGAATCTGAGGGTCGAGGTGAGGAGGCA-AAAGAAGC
1 AAAGAGCTGAATCTAGTAATAGAAGGCCCGAATCTAAGGGTAGAGGTGAGGAGGCAGAAA-AAGC
* * *
82027175 CTTTTTCCAAATGATGAATGAGTGGTTTATAGAATTTATAAAAACAAATCTGCTATACAAAAACC
65 CTTTTTCCAAATGAAGAATGAGTGGTTTACAGAATTTATAAAAACAAATCTACTATACAAAAACC
* ** *
82027240 TCCCCCACTTGCTCCTCAACCGGTTCCAGAGATGCCATAGGGTGCTAAACATGTTAGAATCGATA
130 TCCCCCACCTGCTCCTCAACAAGTTCCAGAGATGCCACAGGGTGCTAAACATGTTAGAATCGATA
*
82027305 AGCCTCCAGTGGATAAAATTCGTAAGTAT-GAGGCAGAGGAATTTAG
195 AGCCTCCAGTGGATAAAATTCGTAAGTATAG-GGCAGAGAAATTTAG
82027351 TGCTACTGCC
Statistics
Matches: 213, Mismatches: 25, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
281 4 0.02
282 209 0.98
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.25
Consensus pattern (282 bp):
AAAGAGCTGAATCTAGTAATAGAAGGCCCGAATCTAAGGGTAGAGGTGAGGAGGCAGAAAAAGCC
TTTTTCCAAATGAAGAATGAGTGGTTTACAGAATTTATAAAAACAAATCTACTATACAAAAACCT
CCCCCACCTGCTCCTCAACAAGTTCCAGAGATGCCACAGGGTGCTAAACATGTTAGAATCGATAA
GCCTCCAGTGGATAAAATTCGTAAGTATAGGGCAGAGAAATTTAGGGTTACTTCCAGCAATGATC
TAGAGAGAGCAAGCTTCGGTTT
Found at i:82030025 original size:41 final size:41
Alignment explanation
Indices: 82029980--82030064 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
82029970 TCATTGATCA
82029980 TGAAAGTTTGAAGTATTTGACGTCACAGAAAGATTTGAACT
1 TGAAAGTTTGAAGTATTTGACGTCACAGAAAGATTTGAACT
*
82030021 TGAAAGTTTGAAGTATTTGATGTCACAGAAAGATTTGAACT
1 TGAAAGTTTGAAGTATTTGACGTCACAGAAAGATTTGAACT
82030062 TGA
1 TGA
82030065 GACAATGTAG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.36, C:0.08, G:0.22, T:0.33
Consensus pattern (41 bp):
TGAAAGTTTGAAGTATTTGACGTCACAGAAAGATTTGAACT
Found at i:82039502 original size:6 final size:6
Alignment explanation
Indices: 82039493--82039527 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
82039483 TGTTTTACTA
* *
82039493 TTATTT TTATTT TTATCT TTGTTT TTATTT TTATT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATT
82039528 CCATTGTCTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.14, C:0.03, G:0.03, T:0.80
Consensus pattern (6 bp):
TTATTT
Found at i:82047735 original size:87 final size:87
Alignment explanation
Indices: 82047630--82047804 Score: 332
Period size: 87 Copynumber: 2.0 Consensus size: 87
82047620 AAATCACTCT
82047630 GGCCCTGTTTCACAAAAGTTTAAATACCTCATAAAATATAATTTATATGCCTGTTTTGTTCAATC
1 GGCCCTGTTTCACAAAAGTTTAAATACCTCATAAAATATAATTTATATGCCTGTTTTGTTCAATC
82047695 CACATGAAAATAGACTCATTAA
66 CACATGAAAATAGACTCATTAA
*
82047717 GGCCCTGTTTCACAAAAGTTTAAATATCTCATAAAATATAATTTATATGCCTGTTTTGTTCAATC
1 GGCCCTGTTTCACAAAAGTTTAAATACCTCATAAAATATAATTTATATGCCTGTTTTGTTCAATC
*
82047782 CACATGAAAATAGACTCGTTAA
66 CACATGAAAATAGACTCATTAA
82047804 G
1 G
82047805 ATTCAATTTC
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
87 86 1.00
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.35
Consensus pattern (87 bp):
GGCCCTGTTTCACAAAAGTTTAAATACCTCATAAAATATAATTTATATGCCTGTTTTGTTCAATC
CACATGAAAATAGACTCATTAA
Found at i:82055941 original size:30 final size:30
Alignment explanation
Indices: 82055907--82055966 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
82055897 ATTTAATACG
82055907 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
82055937 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
82055967 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:82060790 original size:47 final size:47
Alignment explanation
Indices: 82060727--82060856 Score: 161
Period size: 47 Copynumber: 2.8 Consensus size: 47
82060717 GTGCGAATAA
* *
82060727 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATTCAGAAATGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAAATAAGT
* * * **
82060774 TACCTTGATTTCGCTACGGGCCATGATATAGGTACTCCGGGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAAATAAGT
* * * *
82060821 TACATTGGTTTGGCTATGGGCCATAGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
82060857 TATCGATTGT
Statistics
Matches: 70, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAAATAAGT
Found at i:82062440 original size:45 final size:45
Alignment explanation
Indices: 82062376--82062466 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 45
82062366 ATAAATTGCG
*
82062376 ATAGTGTGATGATTCTTAACAGTTAAAATGTGTTTGTCATATAGC
1 ATAGTGTAATGATTCTTAACAGTTAAAATGTGTTTGTCATATAGC
*
82062421 ATAGTGTAATGATTCTTAACAGTTAAAATGTGTTTGTCGTATAGC
1 ATAGTGTAATGATTCTTAACAGTTAAAATGTGTTTGTCATATAGC
82062466 A
1 A
82062467 AATGGATCCC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (45 bp):
ATAGTGTAATGATTCTTAACAGTTAAAATGTGTTTGTCATATAGC
Found at i:82065057 original size:30 final size:30
Alignment explanation
Indices: 82065023--82065083 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
82065013 TCTTTAACTC
82065023 AAACTTTTGAAAAATTACAATTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
* * * *
82065053 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
82065083 A
1 A
82065084 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCT
Found at i:82069657 original size:28 final size:29
Alignment explanation
Indices: 82069546--82069670 Score: 171
Period size: 29 Copynumber: 4.3 Consensus size: 29
82069536 GAAAGCATGT
* * *
82069546 ATATGAATCTGATGTGGGCCTAATGGGTC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
82069575 GTACGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
82069604 ATACGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
82069633 ATATGAATGAGA-TTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
82069661 ATATGCATGT
1 ATATGAATGT
82069671 ATGTAGACTT
Statistics
Matches: 86, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
28 24 0.28
29 62 0.72
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:82073360 original size:20 final size:20
Alignment explanation
Indices: 82073331--82073375 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
82073321 AACACATGTA
82073331 TTCATAAAATTTCAAAATTT
1 TTCATAAAATTTCAAAATTT
* * *
82073351 TTCATCAAATTTTACAATTT
1 TTCATAAAATTTCAAAATTT
82073371 TTCAT
1 TTCAT
82073376 TTAAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.13, G:0.00, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTCAAAATTT
Found at i:82076639 original size:12 final size:12
Alignment explanation
Indices: 82076622--82076654 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
82076612 TTTATTCCTA
82076622 TTAATTATTTAT
1 TTAATTATTTAT
82076634 TTAATTATTTAT
1 TTAATTATTTAT
82076646 TTAATTATT
1 TTAATTATT
82076655 CATTATTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
TTAATTATTTAT
Found at i:82077174 original size:50 final size:50
Alignment explanation
Indices: 82077116--82077215 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
82077106 AGGAATACCA
82077116 TGACGAACACATGAGGCAAGAAGACTACCGTCCCTACTTCGAAAAAGTGG
1 TGACGAACACATGAGGCAAGAAGACTACCGTCCCTACTTCGAAAAAGTGG
82077166 TGACGAACACATGAGGCAAGAAGACTACCGTCCCTACTTCGAAAAAGTGG
1 TGACGAACACATGAGGCAAGAAGACTACCGTCCCTACTTCGAAAAAGTGG
82077216 AAGGGGCTTG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.36, C:0.24, G:0.24, T:0.16
Consensus pattern (50 bp):
TGACGAACACATGAGGCAAGAAGACTACCGTCCCTACTTCGAAAAAGTGG
Found at i:82078419 original size:22 final size:22
Alignment explanation
Indices: 82078369--82078425 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
82078359 TTTGAGTTCA
*
82078369 TTTATTTTATTATTATTATTTT
1 TTTATTTTATTTTTATTATTTT
*
82078391 TTAATTTTATTTTTATT-TTTCT
1 TTTATTTTATTTTTATTATTT-T
82078413 TTTA-TTTATTTTT
1 TTTATTTTATTTTT
82078426 GAAGACTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 12 0.39
22 19 0.61
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (22 bp):
TTTATTTTATTTTTATTATTTT
Found at i:82082283 original size:79 final size:81
Alignment explanation
Indices: 82082147--82082331 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
82082137 TTGAATGATG
*
82082147 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
82082211 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
82082226 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
82082288 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
82082306 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
82082332 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:82082345 original size:40 final size:40
Alignment explanation
Indices: 82082148--82082331 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
82082138 TGAATGATGT
* * * *
82082148 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
82082188 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
82082228 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
82082266 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
82082307 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
82082332 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:82082353 original size:79 final size:79
Alignment explanation
Indices: 82082200--82082364 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
82082190 GGACTAAGAT
* **
82082200 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
82082265 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
82082279 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
82082342 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
82082358 CCGAAGG
1 CCGAAGG
82082365 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:82087919 original size:20 final size:20
Alignment explanation
Indices: 82087894--82087937 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
82087884 AGGATCGTTA
82087894 GGCCCAACACTAGTTCTGGG
1 GGCCCAACACTAGTTCTGGG
82087914 GGCCCAACACTAGTTCTGGG
1 GGCCCAACACTAGTTCTGGG
82087934 GGCC
1 GGCC
82087938 ATGGGTCGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.18
Consensus pattern (20 bp):
GGCCCAACACTAGTTCTGGG
Found at i:82096174 original size:18 final size:18
Alignment explanation
Indices: 82096151--82096185 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
82096141 TGTCCCATCT
82096151 TCATCGAGTGCTACTCCC
1 TCATCGAGTGCTACTCCC
*
82096169 TCATCGAGTGCTGCTCC
1 TCATCGAGTGCTACTCC
82096186 TATGACTCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.14, C:0.37, G:0.20, T:0.29
Consensus pattern (18 bp):
TCATCGAGTGCTACTCCC
Found at i:82097487 original size:47 final size:47
Alignment explanation
Indices: 82097409--82097747 Score: 498
Period size: 47 Copynumber: 7.1 Consensus size: 47
82097399 CCCTTCGGGA
* * * * * **
82097409 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* * *
82097456 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
82097503 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
82097550 CCTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAAGC
82097599 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
82097648 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
82097697 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
82097744 CTTA
1 CTTA
82097748 NNNNNNNNNN
Statistics
Matches: 273, Mismatches: 15, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
47 138 0.51
49 129 0.47
51 6 0.02
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
Found at i:82097583 original size:49 final size:48
Alignment explanation
Indices: 82097409--82097747 Score: 506
Period size: 49 Copynumber: 7.1 Consensus size: 48
82097399 CCCTTCGGGA
* * * * * *
82097409 CTTATCACATTTAT-ACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATAACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82097456 CCTGTCACATATAT-ACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAACACTTTCACATTCATCACATCGGCCATTAGGC
82097503 CTTATCACATATAT-ACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82097550 CCTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATA-ACACTTTCACATTCATCACATCGGCCATTAGGC
*
82097599 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATA-ACACTTTCACATTCATCACATCGGCCATTAGGC
*
82097648 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATA-ACACTTTCACATTCATCACATCGGCCATTAGGC
*
82097697 CTTATCACATATAT-ATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAACACTTTCACATTCATCACATCGGCCATTAGGC
82097744 CTTA
1 CTTA
82097748 NNNNNNNNNN
Statistics
Matches: 274, Mismatches: 16, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
47 132 0.48
49 142 0.52
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (48 bp):
CTTATCACATATATAACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:82101605 original size:40 final size:40
Alignment explanation
Indices: 82101573--82101804 Score: 356
Period size: 40 Copynumber: 5.8 Consensus size: 40
82101563 CCAGCATGAT
* * *
82101573 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
82101613 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
82101653 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * * *
82101693 TGCTCATCGCGACTTAGTCTGGATATATCACTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
82101733 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
82101773 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
82101805 CTCAATTCTC
Statistics
Matches: 177, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 177 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:82103735 original size:37 final size:37
Alignment explanation
Indices: 82103676--82103747 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
82103666 AGCTCAGACG
*
82103676 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
*
82103713 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGA
82103748 ATATATTTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
Found at i:82104017 original size:48 final size:48
Alignment explanation
Indices: 82103891--82104077 Score: 304
Period size: 48 Copynumber: 3.9 Consensus size: 48
82103881 ACGCACATCG
*
82103891 CATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCT
1 CATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
* *
82103939 CATATATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCT
1 C--ATACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCT
82103989 CATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
1 CATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
*
82104037 CATATATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 CATACATATTTCACATTAGCCATTCGGCTTTACCACATATA
82104078 TGCATGTTCA
Statistics
Matches: 129, Mismatches: 6, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
48 84 0.65
49 2 0.02
50 43 0.33
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
CATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
Found at i:82104079 original size:98 final size:99
Alignment explanation
Indices: 82103872--82104082 Score: 331
Period size: 98 Copynumber: 2.1 Consensus size: 99
82103862 GGTCGTTCGG
* *
82103872 CCACAATATACGCACATCGCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
1 CCAC-ATATATGCATATCGCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
82103937 CTCATATATATATTTCACATTGACCATTCGGCTTTA
65 CTCA-ATATATATTTCACATTGACCATTCGGCTTTA
* *
82103973 CCAC--ATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC
1 CCACATATATGCATATCGCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATC
82104036 TC-ATATATATTTCACATT-AGCCATTCGGCTTTA
66 TCAATATATATTTCACATTGA-CCATTCGGCTTTA
82104069 CCACATATATGCAT
1 CCACATATATGCAT
82104083 GTTCATATTC
Statistics
Matches: 103, Mismatches: 4, Indels: 9
0.89 0.03 0.08
Matches are distributed among these distances:
95 1 0.01
96 33 0.32
98 65 0.63
101 4 0.04
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (99 bp):
CCACATATATGCATATCGCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATC
TCAATATATATTTCACATTGACCATTCGGCTTTA
Found at i:82104126 original size:47 final size:47
Alignment explanation
Indices: 82104047--82104240 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
82104037 CATATATATT
* * * *
82104047 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
82104094 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
82104141 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
82104188 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
82104235 TCACAT
1 TCACAT
82104241 AAAATCCTAA
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Done.