Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 247 of 322
Found at i:82104167 original size:22 final size:22
Alignment explanation
Indices: 82104140--82104211 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
82104130 GCTCACATTC
82104140 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
82104162 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
82104186 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
82104209 ATC
1 ATC
82104212 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:82104168 original size:94 final size:94
Alignment explanation
Indices: 82104000--82104240 Score: 290
Period size: 94 Copynumber: 2.6 Consensus size: 94
82103990 ATACATATTT
* * * *
82104000 CACATTAGCCATTCGGCTTTA-C-CACATATACATATCTCATATAT-ATTTCACATTAGCCATTC
1 CACATTGGCCATTCGGCCTTATCACACATATACACA-CTCACAT-TCA--TCACATTAGCCATTC
* *
82104062 GGCTTTACCACATATATGCATGTTCATATTCAC
62 GGCCTTACCACATATATGCATGTTCACATTCAC
* ** *
82104095 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
* *
82104160 TTATCACATATATGCATGTTCACATTCAT
66 TTACCACATATATGCATGTTCACATTCAC
* * *
82104189 CACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACAT
82104241 AAAATCCTAA
Statistics
Matches: 127, Mismatches: 16, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
94 89 0.70
95 20 0.16
96 8 0.06
97 10 0.08
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.34
Consensus pattern (94 bp):
CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
TTACCACATATATGCATGTTCACATTCAC
Found at i:82108668 original size:47 final size:47
Alignment explanation
Indices: 82108513--82108873 Score: 213
Period size: 47 Copynumber: 7.7 Consensus size: 47
82108503 GATATATTGT
** * ** *
82108513 CGATGCCATGTCCCAGACATGGTCTTACACTGGCGCTCATATACACGTGC
1 CGATG-CATGTCCCAGACA-GGTCTTACACTGGCTATCATCTGTAAG-GC
* * * * * * *
82108563 TGATGCTTGTCCCAGACATGTCTTACACTAGC-A-CAACTCTTA-GC
1 CGATGCATGTCCCAGACAGGTCTTACACTGGCTATCATCTGTAAGGC
* * **
82108607 TGATGCGTGTCCCAGACACATCTTACACTGGCTATC-TCTGTCAAGGC
1 CGATGCATGTCCCAGACAGGTCTTACACTGGCTATCATCTGT-AAGGC
* * *
82108654 CGATGCATGTCCCAGGCATGTCTTACACTGGC-ACTCATCTCT--GTGC
1 CGATGCATGTCCCAGACAGGTCTTACACTGGCTA-TCATCTGTAAG-GC
* * * *
82108700 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTATCAT-AGTATGGC
1 CGATG-CATGTCCCAGACA-GGTCTTACACTGGCTATCATCTGTAAGGC
* * * ** * * *
82108748 TGATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTG-GATGC
1 CGATGCATGTCCCAGACAGGTCTTACACTGGCTATCATCTGTAAGGC
* *
82108794 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATGATGT--GGT
1 CGATG-CATGTCCCAGACA-GGTCTTACACTGGCTATCAT-CTGTAAGGC
* * *
82108842 CGATACATTTCCCAGACATGTCTTACACTGGC
1 CGATGCATGTCCCAGACAGGTCTTACACTGGC
82108874 GTACAAATCG
Statistics
Matches: 242, Mismatches: 52, Indels: 38
0.73 0.16 0.11
Matches are distributed among these distances:
44 30 0.12
45 5 0.02
46 48 0.20
47 81 0.33
48 58 0.24
49 16 0.07
50 4 0.02
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (47 bp):
CGATGCATGTCCCAGACAGGTCTTACACTGGCTATCATCTGTAAGGC
Found at i:82108759 original size:94 final size:96
Alignment explanation
Indices: 82108513--82108870 Score: 375
Period size: 94 Copynumber: 3.8 Consensus size: 96
82108503 GATATATTGT
** * *
82108513 CGATGCCATGTCCCAGACATGGTCTTACACTGGCGCTCATA-TACACGTGCTGATGCTTGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGT-CATGTGCTGATGCATGTCCCA
*
82108577 GACATGTCTTACACTAGCA--CAACTCT-TAGC
65 GACATGTCTTACACTAGCACTCATCTCTGT-GC
* * ** * * *
82108607 TGATG-CGTGTCCCAGACA-CATCTTACACTGGCTATC-TCTGTCAAG-GCCGATGCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AGTCATGTGCTGATGCATGTCCCA
* *
82108668 GGCATGTCTTACACTGGCACTCATCTCTGTGC
65 GACATGTCTTACACTAGCACTCATCTCTGTGC
* *
82108700 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTATCATAGT-ATG-GCTGATGCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTCATGTGCTGATGCATGTCCCAG
* * *
82108763 ACATGTCTTACACTAGCCCTCGTCT-GGATGC
66 ACATGTCTTACACTAGCACTCATCTCTG-TGC
* * *
82108794 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-G--ATGTGGTCGATACATTTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTCATGTGCT-GATGCATGTCCCA
82108856 GACATGTCTTACACT
65 GACATGTCTTACACT
82108871 GGCGTACAAA
Statistics
Matches: 221, Mismatches: 32, Indels: 22
0.80 0.12 0.08
Matches are distributed among these distances:
91 32 0.14
92 20 0.09
93 29 0.13
94 122 0.55
95 17 0.08
96 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.28
Consensus pattern (96 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTCATGTGCTGATGCATGTCCCAG
ACATGTCTTACACTAGCACTCATCTCTGTGC
Found at i:82108773 original size:141 final size:140
Alignment explanation
Indices: 82108513--82108827 Score: 363
Period size: 141 Copynumber: 2.2 Consensus size: 140
82108503 GATATATTGT
* * *
82108513 CGATGCCATGTCCCAGACATGGTCTTACACTGGCGCTCATATACACGTGCTGATGCTTGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATATACACGTGCCGATGCATGTCCCAG
* * * *
82108578 ACATGTCTTACACTAGCACAACTCTTAGCTGATGCGTGTCCCAGACACATCTTACACTGGCTATC
66 ACATGTCTTACACTAGCACAACTCATAGCTGATGCATGTCCCAGACACATCTTACACTAGCCATC
82108643 -TCTGTCAAGGC
131 GTCTG--AAGGC
* * * *
82108654 CGATG-CATGTCCCAGGCAT-GTCTTACACTGGCACTCATCT-C-TGTGCCGATGCCATGTCCTA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATATACACGTGCCGATG-CATGTCCCA
* * **
82108715 GACATGGTCTTACACTAGCTATCATAGT-ATGGCTGATGCATGTCCCAGACATGTCTTACACTAG
65 GACAT-GTCTTACACTAGC-A-CA-ACTCATAGCTGATGCATGTCCCAGACACATCTTACACTAG
* * *
82108779 CCCTCGTCTGGATGC
126 CCATCGTCTGAAGGC
82108794 CGATGCCATGTCCCAGACATGGTCTTACACTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGC
82108828 TATCATGATG
Statistics
Matches: 147, Mismatches: 19, Indels: 15
0.81 0.10 0.08
Matches are distributed among these distances:
137 8 0.05
138 13 0.09
139 32 0.22
140 22 0.15
141 53 0.36
142 19 0.13
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (140 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATATACACGTGCCGATGCATGTCCCAG
ACATGTCTTACACTAGCACAACTCATAGCTGATGCATGTCCCAGACACATCTTACACTAGCCATC
GTCTGAAGGC
Found at i:82108859 original size:141 final size:137
Alignment explanation
Indices: 82108513--82108870 Score: 334
Period size: 141 Copynumber: 2.6 Consensus size: 137
82108503 GATATATTGT
** * *
82108513 CGATGCCATGTCCCAGACATGGTCTTACACTGGCGCTCATATACACGTGCT-GATGC-TTGTCCC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAT----GTGGTCGATACATT-TCCC
* * * *
82108576 AGACATGTCTTACACTAGCACAACTCTTAGCTGATGCGTGTCCCAGACACATCTTACACTGGCTA
61 AGACATGTCTTACACTAGCACAACTCATAGCTGATGCATGTCCCAGACACATCTTACACTAGCCA
82108641 TCTCTGTCAAGGC
126 TCTCTG-CAAGGC
* * * * * * *
82108654 CGATG-CATGTCCCAGGCAT-GTCTTACACTGGC-ACTCATCTCTGTGCCGATGCCATGTCCTAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TCATATGTG-GTCGAT-ACATTTCCCAG
* * **
82108716 ACATGGTCTTACACTAGCTATCATAGT-ATGGCTGATGCATGTCCCAGACATGTCTTACACTAGC
63 ACAT-GTCTTACACTAGC-A-CA-ACTCATAGCTGATGCATGTCCCAGACACATCTTACACTAGC
* * *
82108780 CCTCGTCTG-GATGC
124 CATC-TCTGCAAGGC
82108794 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATGATGTGGTCGATACATTTCCCAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-ATGTGGTCGATACATTTCCCAGAC
82108859 ATGTCTTACACT
65 ATGTCTTACACT
82108871 GGCGTACAAA
Statistics
Matches: 176, Mismatches: 27, Indels: 29
0.76 0.12 0.12
Matches are distributed among these distances:
135 2 0.01
137 3 0.02
138 10 0.06
139 32 0.18
140 32 0.18
141 65 0.37
142 28 0.16
143 4 0.02
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.28
Consensus pattern (137 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATATGTGGTCGATACATTTCCCAGACA
TGTCTTACACTAGCACAACTCATAGCTGATGCATGTCCCAGACACATCTTACACTAGCCATCTCT
GCAAGGC
Found at i:82109258 original size:30 final size:30
Alignment explanation
Indices: 82109214--82109271 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
82109204 AAATTTACAT
*
82109214 CTTTGGTAAAATGACCATTTTACCCCTAGA
1 CTTTGGCAAAATGACCATTTTACCCCTAGA
*
82109244 CTTTGGCAAGATGACCATTTTACCCCTA
1 CTTTGGCAAAATGACCATTTTACCCCTA
82109272 TGCTTACAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTACCCCTAGA
Found at i:82114284 original size:43 final size:42
Alignment explanation
Indices: 82114116--82114285 Score: 126
Period size: 43 Copynumber: 4.0 Consensus size: 42
82114106 TAGGATTTCG
* * *
82114116 ATATATGATTTCATGTAAGACCACGTCTGGGACGTTGGCATC
1 ATATTTGATTACATGTAAGACCACGTCTGGGACATTGGCATC
* * * * **
82114158 GAT-TTGAGATTTACGTGTAAGACCATGTCTAGGACATCAGCATC
1 -ATATT-TGA-TTACATGTAAGACCACGTCTGGGACATTGGCATC
* * * *** * *
82114202 ATATTTGCTTTCGTGTAAGACCTTTTCTGGGATAGTGGCATC
1 ATATTTGATTACATGTAAGACCACGTCTGGGACATTGGCATC
* *
82114244 AATATTTGATTACATGTAAGACCACGTCTCGAACATTGGCAT
1 -ATATTTGATTACATGTAAGACCACGTCTGGGACATTGGCAT
82114286 TGTACGAGCT
Statistics
Matches: 94, Mismatches: 29, Indels: 8
0.72 0.22 0.06
Matches are distributed among these distances:
42 27 0.29
43 38 0.40
44 29 0.31
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (42 bp):
ATATTTGATTACATGTAAGACCACGTCTGGGACATTGGCATC
Found at i:82119419 original size:39 final size:40
Alignment explanation
Indices: 82119324--82119585 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
82119314 TTGAATGATG
*
82119324 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
82119362 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
82119403 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
82119442 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
82119481 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
82119520 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
82119559 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
82119586 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:82127435 original size:39 final size:40
Alignment explanation
Indices: 82127340--82127562 Score: 273
Period size: 39 Copynumber: 5.7 Consensus size: 40
82127330 TTGAATGATG
*
82127340 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
82127378 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
82127419 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
82127458 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
82127497 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
82127536 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
82127563 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 10, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
39 93 0.56
40 61 0.37
41 11 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:82127526 original size:79 final size:81
Alignment explanation
Indices: 82127340--82127562 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
82127330 TTGAATGATG
* * *
82127340 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATATCCGGGCTAAGACCCGAAGGCA
*
82127401 TTTGTGCGAGATACTAAT
64 TTTGTGCGAGATACTAAA
82127419 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
*
82127481 TGTGCGAGTTACTAAA
66 TGTGCGAGATACTAAA
* * * * *
82127497 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
82127561 TG
66 TG
82127563 AACGAGGAGC
Statistics
Matches: 128, Mismatches: 9, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:82127584 original size:79 final size:79
Alignment explanation
Indices: 82127340--82127595 Score: 224
Period size: 79 Copynumber: 3.3 Consensus size: 79
82127330 TTGAATGATG
* * * *
82127340 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
82127401 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
82127419 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
82127483 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
82127497 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
*
82127561 TGAACGAG-GAGCTATA
64 TGAACGAGTGA-CTAAA
* *
82127577 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
82127596 TACGTGATTT
Statistics
Matches: 153, Mismatches: 15, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
77 1 0.01
78 45 0.29
79 70 0.46
80 36 0.24
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:82133118 original size:44 final size:41
Alignment explanation
Indices: 82133047--82133195 Score: 133
Period size: 42 Copynumber: 3.5 Consensus size: 41
82133037 TGTGATTTTG
* **
82133047 TGTAAGACCACGTCTGGAATGTTGGCATCGATTTGAGATTTACA
1 TGTAAGACCACGTCTGGGA-CATGGCATCGATTT--GATTTACA
* ***
82133091 TGTAAGACCATGTCTGGGACATCGGCATCGTATTTG-TTTTTG
1 TGTAAGACCACGTCTGGGACAT-GGCATCG-ATTTGATTTACA
82133133 TGTAAGACC-CTGTCTGGGACAGTGGCATCGATATTTGA-TTACA
1 TGTAAGACCAC-GTCTGGGACA-TGGCATCG--ATTTGATTTACA
82133176 TGTAAGACCACGTCTGGGAC
1 TGTAAGACCACGTCTGGGAC
82133196 GTTAGCATTG
Statistics
Matches: 87, Mismatches: 11, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
42 29 0.33
43 29 0.33
44 25 0.29
45 4 0.05
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (41 bp):
TGTAAGACCACGTCTGGGACATGGCATCGATTTGATTTACA
Found at i:82133147 original size:42 final size:43
Alignment explanation
Indices: 82133069--82133195 Score: 136
Period size: 43 Copynumber: 3.0 Consensus size: 43
82133059 TCTGGAATGT
* *
82133069 TGGCATCGAT-TTGAGATTTACATGTAAGACCATGTCTGGGACA-
1 TGGCATCGATATT-TGA-TTACATGTAAGACCCTGTCTGGGACAG
* ***
82133112 TCGGCATCG-TATTTGTTTTTGTGTAAGACCCTGTCTGGGACAG
1 T-GGCATCGATATTTGATTACATGTAAGACCCTGTCTGGGACAG
82133155 TGGCATCGATATTTGATTACATGTAAGACCAC-GTCTGGGAC
1 TGGCATCGATATTTGATTACATGTAAGACC-CTGTCTGGGAC
82133196 GTTAGCATTG
Statistics
Matches: 69, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
42 29 0.42
43 30 0.43
44 10 0.14
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (43 bp):
TGGCATCGATATTTGATTACATGTAAGACCCTGTCTGGGACAG
Found at i:82133217 original size:86 final size:86
Alignment explanation
Indices: 82133042--82133217 Score: 191
Period size: 86 Copynumber: 2.0 Consensus size: 86
82133032 TGATATGTGA
*
82133042 TTTTGTGTAAGACCACGTCTGGAATGTTGGCATCGATTTGAGATTTACATGTAAGACCATGTCTG
1 TTTTGTGTAAGACCACGTCTGGAATGTTGGCATCGATTTGAGATTTACATGTAAGACCACGTCTG
* ***
82133107 GGACATCGGCATCGTATTTGT
66 GGACATCAGCATCGTACGAGT
*
82133128 TTTTGTGTAAGACC-CTGTCTGGGACA-G-TGGCATCGATATT-TGA-TTACATGTAAGACCACG
1 TTTTGTGTAAGACCAC-GTCT-GGA-ATGTTGGCATCGAT-TTGAGATTTACATGTAAGACCACG
* * *
82133188 TCTGGGACGTTAGCATTGTACGAGCT
62 TCTGGGACATCAGCATCGTACGAG-T
82133214 TTTT
1 TTTT
82133218 AAGCTATTTG
Statistics
Matches: 76, Mismatches: 9, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
85 34 0.45
86 35 0.46
87 6 0.08
88 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.35
Consensus pattern (86 bp):
TTTTGTGTAAGACCACGTCTGGAATGTTGGCATCGATTTGAGATTTACATGTAAGACCACGTCTG
GGACATCAGCATCGTACGAGT
Found at i:82135117 original size:32 final size:32
Alignment explanation
Indices: 82135081--82135150 Score: 113
Period size: 32 Copynumber: 2.2 Consensus size: 32
82135071 TAAACCAAAG
* *
82135081 TATTATAAATTACATTAACGTTATTACCTTAA
1 TATTATAAATTACATTAACATTATTACATTAA
*
82135113 TATTATAAATTACATTCACATTATTACATTAA
1 TATTATAAATTACATTAACATTATTACATTAA
82135145 TATTAT
1 TATTAT
82135151 CGAGAGCTGA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.41, C:0.11, G:0.01, T:0.46
Consensus pattern (32 bp):
TATTATAAATTACATTAACATTATTACATTAA
Found at i:82136402 original size:20 final size:20
Alignment explanation
Indices: 82136374--82136445 Score: 99
Period size: 20 Copynumber: 3.6 Consensus size: 20
82136364 GAGGTAAAGC
* *
82136374 ACACACCCGTGTGCTTATGG
1 ACACGCCCGTGTGCTTAGGG
82136394 ACACGCCCGTGTGCTTAGGG
1 ACACGCCCGTGTGCTTAGGG
* *
82136414 ACACGCTCGTGTACTTAGGG
1 ACACGCCCGTGTGCTTAGGG
*
82136434 ACATGCCCGTGT
1 ACACGCCCGTGT
82136446 CCCTCACCCG
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24
Consensus pattern (20 bp):
ACACGCCCGTGTGCTTAGGG
Found at i:82140106 original size:17 final size:17
Alignment explanation
Indices: 82140084--82140116 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
82140074 AATAAATTAG
82140084 CATCTCTCTATAGGATA
1 CATCTCTCTATAGGATA
82140101 CATCTCTCTATAGGAT
1 CATCTCTCTATAGGAT
82140117 TCATGAGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.36
Consensus pattern (17 bp):
CATCTCTCTATAGGATA
Found at i:82142843 original size:40 final size:40
Alignment explanation
Indices: 82142806--82143031 Score: 314
Period size: 40 Copynumber: 5.7 Consensus size: 40
82142796 GCTACTCGTT
* *
82142806 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
82142846 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
82142886 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
82142926 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
82142966 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
82143007 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
82143032 CATCATTCAA
Statistics
Matches: 171, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
39 2 0.01
40 156 0.91
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:82150453 original size:29 final size:27
Alignment explanation
Indices: 82150420--82150481 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 27
82150410 GTAGGGATTG
*
82150420 GGGAAGAAATATAGGGATTTGGGAAATT
1 GGGAAAAAAT-TAGGGATTTGGGAAATT
* * *
82150448 AGGGAAAAAATTGGGGATTTTGGAAGTT
1 -GGGAAAAAATTAGGGATTTGGGAAATT
82150476 GGGAAA
1 GGGAAA
82150482 TTAGGGAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 6 0.21
28 14 0.48
29 9 0.31
ACGTcount: A:0.39, C:0.00, G:0.37, T:0.24
Consensus pattern (27 bp):
GGGAAAAAATTAGGGATTTGGGAAATT
Found at i:82153164 original size:23 final size:24
Alignment explanation
Indices: 82153138--82153183 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
82153128 ATATCCCCAC
*
82153138 ATGGAATGTAG-GGTTGGACGGAG
1 ATGGAATGTAGAGGCTGGACGGAG
*
82153161 ATGGAGTGTAGAGGCTGGACGGA
1 ATGGAATGTAGAGGCTGGACGGA
82153184 TAGGACTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.26, C:0.07, G:0.48, T:0.20
Consensus pattern (24 bp):
ATGGAATGTAGAGGCTGGACGGAG
Found at i:82153944 original size:22 final size:22
Alignment explanation
Indices: 82153919--82153960 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
82153909 ATAAGCTTTT
*
82153919 ACATTAATATCTATATATATAC
1 ACATCAATATCTATATATATAC
* *
82153941 ACATCAATATTTATCTATAT
1 ACATCAATATCTATATATAT
82153961 TAAATTTATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (22 bp):
ACATCAATATCTATATATATAC
Found at i:82153988 original size:15 final size:15
Alignment explanation
Indices: 82153970--82154055 Score: 59
Period size: 15 Copynumber: 5.8 Consensus size: 15
82153960 TTAAATTTAT
82153970 TTTTAAGGTTTAGAG
1 TTTTAAGGTTTAGAG
*
82153985 TTTTAGGGTTTAG-G
1 TTTTAAGGTTTAGAG
** * *
82153999 AATTAAGGCTTAAAG
1 TTTTAAGGTTTAGAG
* *
82154014 GTTTAAGGATTTAGTG
1 TTTTAAGG-TTTAGAG
* *
82154030 -TCTAAAGTTTAGAG
1 TTTTAAGGTTTAGAG
*
82154044 TTTTAGGGTTTA
1 TTTTAAGGTTTA
82154056 AGGTTTTTGT
Statistics
Matches: 51, Mismatches: 17, Indels: 6
0.69 0.23 0.08
Matches are distributed among these distances:
14 15 0.29
15 32 0.63
16 4 0.08
ACGTcount: A:0.28, C:0.02, G:0.27, T:0.43
Consensus pattern (15 bp):
TTTTAAGGTTTAGAG
Found at i:82154665 original size:41 final size:41
Alignment explanation
Indices: 82154594--82154705 Score: 136
Period size: 41 Copynumber: 2.7 Consensus size: 41
82154584 GATAAAGAAT
* ** * *
82154594 GCCACTATTGCTCAGCTTTCAGTGGTGTTTGAAACAAAAAC
1 GCCACTATTGCTCAACTTTTTGAGGCGTTTGAAACAAAAAC
* * *
82154635 GCTACTATTGCTCAACTTTTTGAGGCGTTTGGACCAAAAAC
1 GCCACTATTGCTCAACTTTTTGAGGCGTTTGAAACAAAAAC
82154676 GCCACTATTGCTCAACTTTTTGCA-GCGTTT
1 GCCACTATTGCTCAACTTTTTG-AGGCGTTT
82154706 TCCTGCTAAC
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
41 60 0.98
42 1 0.02
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (41 bp):
GCCACTATTGCTCAACTTTTTGAGGCGTTTGAAACAAAAAC
Found at i:82166553 original size:42 final size:42
Alignment explanation
Indices: 82166472--82166553 Score: 94
Period size: 42 Copynumber: 2.0 Consensus size: 42
82166462 GGTGCAGGGG
* * *
82166472 ACACACGGCCAGAACATACGCCCATGGGACAAGCGATGTGTC
1 ACACACGGCCAGAACACACGCCCATGGGACAACCCATGTGTC
* * *
82166514 ACACACGGCCTA-AACACACGCCCATGTGTCTACCCATGTG
1 ACACACGGCC-AGAACACACGCCCATGGGACAACCCATGTG
82166554 GACAAAAATA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
42 32 0.97
43 1 0.03
ACGTcount: A:0.29, C:0.34, G:0.22, T:0.15
Consensus pattern (42 bp):
ACACACGGCCAGAACACACGCCCATGGGACAACCCATGTGTC
Found at i:82167430 original size:42 final size:42
Alignment explanation
Indices: 82167322--82167479 Score: 194
Period size: 42 Copynumber: 3.7 Consensus size: 42
82167312 ATACCAATGT
* * * *
82167322 CATATCCTAGATATAGTCTTACATGTAA-TCCCATATCGATGC
1 CATATCCCAGATATGGTCTTACACG-AAGTCTCATATCGATGC
*
82167364 CAATAGCCCA-ACTATGGTCTTACACGAAGTCTCATATCGATGC
1 C-ATATCCCAGA-TATGGTCTTACACGAAGTCTCATATCGATGC
*
82167407 CATATCCCAGATATGGTCTTACACGAAGTCTCATATTGATGC
1 CATATCCCAGATATGGTCTTACACGAAGTCTCATATCGATGC
* * *
82167449 CAGATCCCAAATATGGTCTTACACGTAGTCT
1 CATATCCCAGATATGGTCTTACACGAAGTCT
82167480 TAGTAACCCT
Statistics
Matches: 102, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
42 69 0.68
43 33 0.32
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACACGAAGTCTCATATCGATGC
Found at i:82167442 original size:85 final size:84
Alignment explanation
Indices: 82167322--82167479 Score: 212
Period size: 85 Copynumber: 1.9 Consensus size: 84
82167312 ATACCAATGT
* * *
82167322 CATATCCTAGATATAGTCTTACATGTAATCCCATATCGATGCCA-ATAGCCCAACTATGGTCTTA
1 CATATCCCAGATATAGTCTTACACGTAATCCCATATCGATGCCAGAT--CCCAAATATGGTCTTA
82167386 CACGAAGTCTCATATCGATGC
64 CACGAAGTCTCATATCGATGC
* * *
82167407 CATATCCCAGATATGGTCTTACACG-AAGTCTCATATTGATGCCAGATCCCAAATATGGTCTTAC
1 CATATCCCAGATATAGTCTTACACGTAA-TCCCATATCGATGCCAGATCCCAAATATGGTCTTAC
*
82167471 ACGTAGTCT
65 ACGAAGTCT
82167480 TAGTAACCCT
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
84 26 0.41
85 36 0.56
86 2 0.03
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (84 bp):
CATATCCCAGATATAGTCTTACACGTAATCCCATATCGATGCCAGATCCCAAATATGGTCTTACA
CGAAGTCTCATATCGATGC
Found at i:82176657 original size:32 final size:32
Alignment explanation
Indices: 82176609--82176673 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 32
82176599 GCCGACCTTT
* *
82176609 AAAAGAAAAGATGATGAAAC-CTTCAGTGTTTA
1 AAAAAAAAAGACGATGAAACTCTTCAGT-TTTA
82176641 AAAAAAAAAGACGATGAAACTCTTCAGTTTTA
1 AAAAAAAAAGACGATGAAACTCTTCAGTTTTA
82176673 A
1 A
82176674 CCTCTTCCAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 23 0.77
33 7 0.23
ACGTcount: A:0.49, C:0.11, G:0.15, T:0.25
Consensus pattern (32 bp):
AAAAAAAAAGACGATGAAACTCTTCAGTTTTA
Found at i:82178081 original size:29 final size:30
Alignment explanation
Indices: 82178025--82178083 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
82178015 TTCCCGAGCC
82178025 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
* *
82178055 TAGGGGCAAAA-TGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
82178084 CATATTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 16 0.59
30 11 0.41
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAATTATGCAAAAGTT
Found at i:82181716 original size:35 final size:36
Alignment explanation
Indices: 82181670--82181746 Score: 138
Period size: 36 Copynumber: 2.2 Consensus size: 36
82181660 TTGTGTGTTG
82181670 ACTATCGGCAATTAAA-AAGGTGACAATCAAAAACA
1 ACTATCGGCAATTAAACAAGGTGACAATCAAAAACA
82181705 ACTATCGGCAATTAAACAAGGTGACAATCAAAAACA
1 ACTATCGGCAATTAAACAAGGTGACAATCAAAAACA
*
82181741 AGTATC
1 ACTATC
82181747 CATTGCCAAG
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
35 16 0.40
36 24 0.60
ACGTcount: A:0.49, C:0.18, G:0.14, T:0.18
Consensus pattern (36 bp):
ACTATCGGCAATTAAACAAGGTGACAATCAAAAACA
Found at i:82191097 original size:55 final size:56
Alignment explanation
Indices: 82191032--82191146 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
82191022 AGCATGGCTG
* *
82191032 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
82191088 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
82191143 CCAG
1 CCAG
82191147 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.56
56 22 0.42
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:82191109 original size:27 final size:27
Alignment explanation
Indices: 82191057--82191146 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
82191047 GTGACAGAGT
82191057 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
82191086 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
82191113 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
82191141 CACCAG
1 CACCAG
82191147 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:82191299 original size:28 final size:28
Alignment explanation
Indices: 82191252--82191316 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
82191242 AAATTAACCC
*
82191252 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
82191280 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
82191308 TAGGGGTAT
1 TAGGGGTAT
82191317 TCTAGTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:82198126 original size:19 final size:19
Alignment explanation
Indices: 82198090--82198128 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
82198080 TTTTCATCAT
* *
82198090 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
82198109 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
82198128 A
1 A
82198129 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:82198632 original size:55 final size:56
Alignment explanation
Indices: 82198567--82198681 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
82198557 AGCATGGCTG
* *
82198567 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
82198623 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
82198678 CCAG
1 CCAG
82198682 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.56
56 22 0.42
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:82198644 original size:27 final size:27
Alignment explanation
Indices: 82198592--82198681 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
82198582 GTGACAGAGT
82198592 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
82198621 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
82198648 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
82198676 CACCAG
1 CACCAG
82198682 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:82198834 original size:28 final size:28
Alignment explanation
Indices: 82198787--82198851 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
82198777 AAATTAACCC
*
82198787 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
82198815 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
82198843 TAGGGGTAT
1 TAGGGGTAT
82198852 TCTAGTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:82205463 original size:16 final size:15
Alignment explanation
Indices: 82205439--82205468 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
82205429 AACTATTTTA
82205439 TTACAAATTTCACTC
1 TTACAAATTTCACTC
82205454 TTACATAATTTCACT
1 TTACA-AATTTCACT
82205469 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:82205723 original size:50 final size:50
Alignment explanation
Indices: 82205666--82205908 Score: 245
Period size: 50 Copynumber: 4.8 Consensus size: 50
82205656 GTAACCAAAG
** *
82205666 CTATCTGGTACTTATAGTAGCCTGCACTTAGTACTACACATGCGACCTAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
* * * * *
82205716 CTATCTGGTGCACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
* * * *
82205766 GT-TGCCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAA
1 CTAT--CTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
** *
82205817 CTATCTGGTACATGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCT--AA
* *** * * *
82205869 CCATCTTAAACACATAATAGCATGCACATAGTACTACACA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
82205909 TGTGTTCTCA
Statistics
Matches: 155, Mismatches: 33, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
49 1 0.01
50 81 0.52
51 39 0.25
52 34 0.22
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
Found at i:82205809 original size:101 final size:101
Alignment explanation
Indices: 82205679--82205861 Score: 348
Period size: 101 Copynumber: 1.8 Consensus size: 101
82205669 TCTGGTACTT
*
82205679 ATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTGCACGTAGTAGCCTGCACT
1 ATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCCTGCACT
82205744 TAGTACTACACACGTGATCGAAGTTGCCGGGTACGC
66 TAGTACTACACACGTGATCGAAGTTGCCGGGTACGC
*
82205780 ATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACATGTAGTAGCCTGCACT
1 ATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCCTGCACT
82205845 TAGTACTACACACGTGA
66 TAGTACTACACACGTGA
82205862 CCTAAAACCA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
101 80 1.00
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (101 bp):
ATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCCTGCACT
TAGTACTACACACGTGATCGAAGTTGCCGGGTACGC
Found at i:82206284 original size:25 final size:26
Alignment explanation
Indices: 82206251--82206307 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 26
82206241 GCTACAAGTC
*
82206251 ATATATCATTGTTCTCA-CAATTTTT-
1 ATATATCATTCTT-TCATCAATTTTTA
*
82206276 ATATATCATTCTTTCATCACTTTTTA
1 ATATATCATTCTTTCATCAATTTTTA
82206302 ATATAT
1 ATATAT
82206308 TAATTCACGC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 3 0.11
25 19 0.68
26 6 0.21
ACGTcount: A:0.30, C:0.16, G:0.02, T:0.53
Consensus pattern (26 bp):
ATATATCATTCTTTCATCAATTTTTA
Found at i:82211656 original size:12 final size:13
Alignment explanation
Indices: 82211639--82211667 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
82211629 ACTTATTCGG
82211639 TAAGTTTAAGTT-
1 TAAGTTTAAGTTA
82211651 TAAGTTTAAGTTA
1 TAAGTTTAAGTTA
82211664 TAAG
1 TAAG
82211668 AGCTTACTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.38, C:0.00, G:0.17, T:0.45
Consensus pattern (13 bp):
TAAGTTTAAGTTA
Found at i:82218669 original size:38 final size:38
Alignment explanation
Indices: 82218608--82218796 Score: 211
Period size: 38 Copynumber: 4.9 Consensus size: 38
82218598 ATTTGATGTG
* *
82218608 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCT-TCGTGCTGGAATTA
82218648 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG-AATTA
*
82218686 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
* * * *
82218724 TATCTGGGTTAAATCCCGCAGGCCTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
* * * *
82218762 TATCTGAGCTTAAAGTCCCGCAGGTTTTGTGCTGG
1 TATCCG-GGTTAAA-TCCCGCAGGCTTCGTGCTGG
82218797 TGACTAGATT
Statistics
Matches: 134, Mismatches: 10, Indels: 10
0.87 0.06 0.06
Matches are distributed among these distances:
37 2 0.01
38 94 0.70
39 13 0.10
40 25 0.19
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.30
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
Found at i:82218707 original size:76 final size:77
Alignment explanation
Indices: 82218608--82218785 Score: 234
Period size: 76 Copynumber: 2.3 Consensus size: 77
82218598 ATTTGATGTG
* *
82218608 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCT
1 TATCCGGG-TTAAAGTCCCGCAGGCT-TCATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCC
*
82218672 TCGTGCTGGTAATA
64 TAGTGCTGGTAATA
* * *
82218686 TATCCGGGTTAAA-TCCCGCAGGCTTCGTGCTGGTATTATATCTGGGTTAAATCCCGCAGGCCTA
1 TATCCGGGTTAAAGTCCCGCAGGCTTCATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCCTA
*
82218750 GTGCTGGTATTA
66 GTGCTGGTAATA
* *
82218762 TATCTGAGCTTAAAGTCCCGCAGG
1 TATCCG-GGTTAAAGTCCCGCAGG
82218786 TTTTGTGCTG
Statistics
Matches: 88, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
75 1 0.01
76 59 0.67
77 11 0.12
78 17 0.19
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (77 bp):
TATCCGGGTTAAAGTCCCGCAGGCTTCATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCCTA
GTGCTGGTAATA
Found at i:82224832 original size:82 final size:82
Alignment explanation
Indices: 82224736--82224897 Score: 306
Period size: 82 Copynumber: 2.0 Consensus size: 82
82224726 GATGTTGTTC
82224736 TATACATATTATATGTATTTTATATCAATATTATTTTCAACTAAATGAATTAAAGAATTAAGGGA
1 TATACATATTATATGTATTTTATATCAATATTATTTTCAACTAAATGAATTAAAGAATTAAGGGA
*
82224801 AATGAAATAATGGGTTG
66 AATAAAATAATGGGTTG
*
82224818 TATACATATTATATGTATTTTATATTAATATTATTTTCAACTAAATGAATTAAAGAATTAAGGGA
1 TATACATATTATATGTATTTTATATCAATATTATTTTCAACTAAATGAATTAAAGAATTAAGGGA
82224883 AATAAAATAATGGGT
66 AATAAAATAATGGGT
82224898 AGTGGGAGGA
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
82 78 1.00
ACGTcount: A:0.44, C:0.04, G:0.12, T:0.40
Consensus pattern (82 bp):
TATACATATTATATGTATTTTATATCAATATTATTTTCAACTAAATGAATTAAAGAATTAAGGGA
AATAAAATAATGGGTTG
Found at i:82226981 original size:39 final size:38
Alignment explanation
Indices: 82226863--82227025 Score: 150
Period size: 38 Copynumber: 4.2 Consensus size: 38
82226853 CGTAGCTATA
* * *
82226863 TGCTGGAATTATATCTGGGTTAAATCCCGCAGGCTTCA-
1 TGCTGGTATTATATCCGAGTTAAATCCCGCAGGCTT-AG
* * * *
82226901 TGCTGGTAATATATCCGGGTTAAATCCCGCAAGCTTCG
1 TGCTGGTATTATATCCGAGTTAAATCCCGCAGGCTTAG
* * *
82226939 TGCTTGTATTATATTCGAGTTAAAGTCCCGCAGGCCTAG
1 TGCTGGTATTATATCCGAGTTAAA-TCCCGCAGGCTTAG
* * *
82226978 TGCTGGTATTATATCTGAACTTAAAGTCCCACAGG-TTATG
1 TGCTGGTATTATATCCG-AGTTAAA-TCCCGCAGGCTTA-G
82227018 TGCTGGTA
1 TGCTGGTA
82227026 ACTAGATTTG
Statistics
Matches: 103, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
38 52 0.50
39 27 0.26
40 24 0.23
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (38 bp):
TGCTGGTATTATATCCGAGTTAAATCCCGCAGGCTTAG
Found at i:82233604 original size:31 final size:31
Alignment explanation
Indices: 82233561--82233625 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
82233551 GCAGCTATAT
82233561 GCTGGAATTATATCCGGGTTAAATCCCGCAA
1 GCTGGAATTATATCCGGGTTAAATCCCGCAA
*
82233592 GCTGGTAA-TATATCCGGGTTAAATCCTGCAA
1 GCTGG-AATTATATCCGGGTTAAATCCCGCAA
82233623 GCT
1 GCT
82233626 TCGTGTAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 30 0.94
32 2 0.06
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (31 bp):
GCTGGAATTATATCCGGGTTAAATCCCGCAA
Found at i:82235597 original size:38 final size:38
Alignment explanation
Indices: 82235552--82235694 Score: 191
Period size: 38 Copynumber: 3.7 Consensus size: 38
82235542 GGCTTAAAGA
*
82235552 CCCGCAGGCTAT-ATGCTGGAATTATATCCGGGTTAAAT
1 CCCGCAGGCT-TCGTGCTGGAATTATATCCGGGTTAAAT
82235590 CCCGCAGGCTTCGTGCTGGTAA-TATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGG-AATTATATCCGGGTTAAAT
* *
82235628 CCCGCATGCTTCGTGCTGGTATTATATCCGGGTTAAAGT
1 CCCGCAGGCTTCGTGCTGGAATTATATCCGGGTTAAA-T
* * *
82235667 CCCGCAGGCCTAGTGCTGGTATTATATC
1 CCCGCAGGCTTCGTGCTGGAATTATATC
82235695 TGAACTTAAA
Statistics
Matches: 95, Mismatches: 6, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
37 2 0.02
38 65 0.68
39 28 0.29
ACGTcount: A:0.21, C:0.24, G:0.25, T:0.30
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGAATTATATCCGGGTTAAAT
Found at i:82241193 original size:20 final size:20
Alignment explanation
Indices: 82241168--82241217 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
82241158 GTGACCCCTA
82241168 TTTTCAAAATTTTCAATTTT
1 TTTTCAAAATTTTCAATTTT
**
82241188 TTTTCAAAATTTTCTGTTTT
1 TTTTCAAAATTTTCAATTTT
*
82241208 GTTTCAAAAT
1 TTTTCAAAAT
82241218 GAACCCTGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.28, C:0.10, G:0.04, T:0.58
Consensus pattern (20 bp):
TTTTCAAAATTTTCAATTTT
Found at i:82244343 original size:22 final size:21
Alignment explanation
Indices: 82244304--82244347 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
82244294 AATAATACAA
* *
82244304 AATTTATCATGATTAAATATT
1 AATTTATCATAATGAAATATT
82244325 AATTTATCATAAATGAAATATT
1 AATTTATCAT-AATGAAATATT
82244347 A
1 A
82244348 TTATTAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.48, C:0.05, G:0.05, T:0.43
Consensus pattern (21 bp):
AATTTATCATAATGAAATATT
Found at i:82249205 original size:15 final size:15
Alignment explanation
Indices: 82249185--82249215 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
82249175 GTCATGTAAG
82249185 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
82249200 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
82249215 T
1 T
82249216 ATATTGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.32, T:0.23
Consensus pattern (15 bp):
TGAAAGGTCAAGAGT
Found at i:82249405 original size:17 final size:17
Alignment explanation
Indices: 82249372--82249410 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
82249362 TAAGCTTTTG
82249372 ATTTTATATGAGAGAAC
1 ATTTTATATGAGAGAAC
*
82249389 AATTTTATAT-TGAGAAC
1 -ATTTTATATGAGAGAAC
82249406 ATTTT
1 ATTTT
82249411 CCACAAGAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 6 0.30
18 9 0.45
ACGTcount: A:0.38, C:0.05, G:0.13, T:0.44
Consensus pattern (17 bp):
ATTTTATATGAGAGAAC
Found at i:82249934 original size:51 final size:51
Alignment explanation
Indices: 82249848--82249971 Score: 169
Period size: 51 Copynumber: 2.5 Consensus size: 51
82249838 TGGAAACATG
** * *
82249848 ATCTTAAAAGATATGA-TTTATAATCTTAGAGATCTTAGATATGATATGTA
1 ATCTTAAAAGATATGATTTTATAAGATTACAGATCTTAGATAAGATATGTA
* * *
82249898 ATCTTATAAGATATTATTTTATAAGATTACATATCTTAGATAAGATATGTA
1 ATCTTAAAAGATATGATTTTATAAGATTACAGATCTTAGATAAGATATGTA
*
82249949 ATCTTAGAAGATATGATTTTATA
1 ATCTTAAAAGATATGATTTTATA
82249972 TTCTTAGAGA
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
50 14 0.22
51 50 0.78
ACGTcount: A:0.40, C:0.06, G:0.12, T:0.42
Consensus pattern (51 bp):
ATCTTAAAAGATATGATTTTATAAGATTACAGATCTTAGATAAGATATGTA
Found at i:82249952 original size:19 final size:19
Alignment explanation
Indices: 82249879--82249956 Score: 62
Period size: 19 Copynumber: 4.4 Consensus size: 19
82249869 AATCTTAGAG
*
82249879 ATCTTAGATATGATATGTA
1 ATCTTAGATAAGATATGTA
82249898 ATCTT--ATAAGATAT-T-
1 ATCTTAGATAAGATATGTA
* **
82249913 AT-TT-TATAAGAT-TACA
1 ATCTTAGATAAGATATGTA
82249929 TATCTTAGATAAGATATGTA
1 -ATCTTAGATAAGATATGTA
82249949 ATCTTAGA
1 ATCTTAGA
82249957 AGATATGATT
Statistics
Matches: 47, Mismatches: 5, Indels: 14
0.71 0.08 0.21
Matches are distributed among these distances:
14 3 0.06
15 9 0.19
16 1 0.02
17 10 0.21
18 2 0.04
19 20 0.43
20 2 0.04
ACGTcount: A:0.40, C:0.06, G:0.12, T:0.42
Consensus pattern (19 bp):
ATCTTAGATAAGATATGTA
Found at i:82250949 original size:21 final size:21
Alignment explanation
Indices: 82250925--82250968 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
82250915 TCTTGTGGTG
82250925 GAGACGTAGGTCCAC-AGATGA
1 GAGACGTAGGTCCACGA-ATGA
82250946 GAGACGTAGGTCCACGAATGA
1 GAGACGTAGGTCCACGAATGA
82250967 GA
1 GA
82250969 ACGACCATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 21 0.95
22 1 0.05
ACGTcount: A:0.34, C:0.18, G:0.34, T:0.14
Consensus pattern (21 bp):
GAGACGTAGGTCCACGAATGA
Found at i:82254472 original size:16 final size:17
Alignment explanation
Indices: 82254440--82254476 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
82254430 AAGTGATTTC
82254440 ATTTAGTTTTATGTTTT
1 ATTTAGTTTTATGTTTT
82254457 ATTTA-TTTT-TGTTTTT
1 ATTTAGTTTTATG-TTTT
82254473 ATTT
1 ATTT
82254477 TTATTGTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 2 0.11
16 12 0.63
17 5 0.26
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (17 bp):
ATTTAGTTTTATGTTTT
Found at i:82254477 original size:6 final size:6
Alignment explanation
Indices: 82254441--82254501 Score: 56
Period size: 6 Copynumber: 10.3 Consensus size: 6
82254431 AGTGATTTCA
* * *
82254441 TTTAGT TTTATGT TTTA-- TTTATT TTTGTT TTTATT TTTATT GTTATT
1 TTTATT TTTAT-T TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
82254488 TGTT-TT TTTATT TT
1 T-TTATT TTTATT TT
82254502 ATTATGCACT
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
4 4 0.09
5 2 0.04
6 32 0.71
7 7 0.16
ACGTcount: A:0.13, C:0.00, G:0.08, T:0.79
Consensus pattern (6 bp):
TTTATT
Found at i:82254478 original size:29 final size:29
Alignment explanation
Indices: 82254441--82254504 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
82254431 AGTGATTTCA
* *
82254441 TTTAGTTTTATGTTTTATTTATTTTTGT-T
1 TTTATTTTTAT-TGTTATTTATTTTTGTAT
* *
82254470 TTTATTTTTATTGTTATTTGTTTTTTTAT
1 TTTATTTTTATTGTTATTTATTTTTGTAT
82254499 TTTATT
1 TTTATT
82254505 ATGCACTATA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 13 0.43
29 17 0.57
ACGTcount: A:0.14, C:0.00, G:0.08, T:0.78
Consensus pattern (29 bp):
TTTATTTTTATTGTTATTTATTTTTGTAT
Found at i:82264421 original size:18 final size:18
Alignment explanation
Indices: 82264360--82264427 Score: 54
Period size: 18 Copynumber: 3.7 Consensus size: 18
82264350 CAACTAAATA
82264360 ATTT-ATTTTAACAT-TAT
1 ATTTAATTTTAA-ATATAT
*
82264377 -TTATAATTTTAAATATCT
1 ATT-TAATTTTAAATATAT
82264395 ATTTAAATTTT-AATAATAT
1 ATTT-AATTTTAAAT-ATAT
82264414 ATTTAATTTGTAAA
1 ATTTAATTT-TAAA
82264428 AATAGCAATA
Statistics
Matches: 41, Mismatches: 2, Indels: 13
0.73 0.04 0.23
Matches are distributed among these distances:
16 2 0.05
17 3 0.07
18 18 0.44
19 16 0.39
20 2 0.05
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.54
Consensus pattern (18 bp):
ATTTAATTTTAAATATAT
Found at i:82264431 original size:19 final size:18
Alignment explanation
Indices: 82264355--82264431 Score: 61
Period size: 19 Copynumber: 4.3 Consensus size: 18
82264345 TATGACAACT
82264355 AAATA-ATTT-ATTTTAA
1 AAATATATTTAATTTTAA
* *
82264371 CATTAT-TTATAATTTTAA
1 AAATATATT-TAATTTTAA
* *
82264389 ATATCTATTTAAATTTTAA
1 AAATATATTT-AATTTTAA
*
82264408 TAATATATTTAATTTGTAA
1 AAATATATTTAATTT-TAA
82264427 AAATA
1 AAATA
82264432 GCAATAAACT
Statistics
Matches: 45, Mismatches: 10, Indels: 9
0.70 0.16 0.14
Matches are distributed among these distances:
16 5 0.11
17 1 0.02
18 15 0.33
19 24 0.53
ACGTcount: A:0.45, C:0.03, G:0.01, T:0.51
Consensus pattern (18 bp):
AAATATATTTAATTTTAA
Found at i:82266464 original size:26 final size:27
Alignment explanation
Indices: 82266428--82266527 Score: 91
Period size: 27 Copynumber: 3.7 Consensus size: 27
82266418 ATTGTTAAAT
* *
82266428 TTTAATAAAAATTTAAATAT-TAAAAA
1 TTTAATAAAAATTAAAAAATGTAAAAA
*
82266454 TTTATTAAAAATTAAAAAATGTAAAAA
1 TTTAATAAAAATTAAAAAATGTAAAAA
*
82266481 TCGTAA-AAAAA-TATAAAAATGGT-AAAA
1 T-TTAATAAAAATTA-AAAAAT-GTAAAAA
*
82266508 TTTTATAAAAATTGAAAAAA
1 TTTAATAAAAATT-AAAAAA
82266528 ATTATAAAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
26 21 0.35
27 28 0.47
28 10 0.17
29 1 0.02
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.32
Consensus pattern (27 bp):
TTTAATAAAAATTAAAAAATGTAAAAA
Found at i:82266473 original size:8 final size:8
Alignment explanation
Indices: 82266434--82266565 Score: 50
Period size: 8 Copynumber: 14.9 Consensus size: 8
82266424 AAATTTTAAT
*
82266434 AAAAATTT
1 AAAAATTA
*
82266442 AAATATTA
1 AAAAATTA
*
82266450 AAAATTTA
1 AAAAATTA
82266458 TTAAAAATTA
1 --AAAAATTA
82266468 AAAAATGT-
1 AAAAAT-TA
82266476 AAAAATCGTA
1 AAAAAT--TA
*
82266486 AAAAAATA
1 AAAAATTA
82266494 TAAAAATGGTA
1 -AAAAAT--TA
**
82266505 AAATTTTA
1 AAAAATTA
82266513 TAAAAATTGAA
1 -AAAAATT--A
82266524 AAAAATTA
1 AAAAATTA
*
82266532 TAAAATATTT
1 -AAAA-ATTA
*
82266542 AGAAATATA
1 AAAAAT-TA
82266551 AAAAATTA
1 AAAAATTA
*
82266559 TAAAATT
1 AAAAATT
82266566 TTATAAAGTC
Statistics
Matches: 94, Mismatches: 16, Indels: 28
0.68 0.12 0.20
Matches are distributed among these distances:
8 39 0.41
9 26 0.28
10 26 0.28
11 3 0.03
ACGTcount: A:0.63, C:0.01, G:0.05, T:0.32
Consensus pattern (8 bp):
AAAAATTA
Found at i:82266489 original size:19 final size:19
Alignment explanation
Indices: 82266467--82266632 Score: 74
Period size: 19 Copynumber: 8.8 Consensus size: 19
82266457 ATTAAAAATT
*
82266467 AAAAAATGTAAAAATCGTA
1 AAAAAATATAAAAATCGTA
*
82266486 AAAAAATATAAAAATGGTA
1 AAAAAATATAAAAATCGTA
*** *
82266505 AAATTTTATAAAAATTG-A
1 AAAAAATATAAAAATCGTA
*
82266523 AAAAAATTATAAAATAT-TTA
1 AAAAAA-TATAAAA-ATCGTA
* *
82266543 GAAATATA-AAAAAT--TA
1 AAAAAATATAAAAATCGTA
* * * * *
82266559 TAAAATTTTATAAAGTCATA
1 AAAAAATATA-AAAATCGTA
*
82266579 AGAAAATTATACAAAAT-GTA
1 A-AAAAATATA-AAAATCGTA
* **
82266599 AAGAAATATAAATTTCGTA
1 AAAAAATATAAAAATCGTA
*
82266618 AAAAATTATAAAAAT
1 AAAAAATATAAAAAT
82266633 TATTGTACCA
Statistics
Matches: 108, Mismatches: 30, Indels: 18
0.69 0.19 0.12
Matches are distributed among these distances:
16 6 0.06
17 3 0.03
18 15 0.14
19 60 0.56
20 12 0.11
21 12 0.11
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.30
Consensus pattern (19 bp):
AAAAAATATAAAAATCGTA
Found at i:82266517 original size:27 final size:26
Alignment explanation
Indices: 82266424--82266572 Score: 88
Period size: 27 Copynumber: 5.5 Consensus size: 26
82266414 AAATATTGTT
* *
82266424 AAATTTTAATAAAAATTTAAATAT-TA
1 AAATTTT-ATAAAAATATAAAAATATA
* *
82266450 AAAATTTATTAAAAAT-TAAAAAATGTAA
1 AAATTTTA-TAAAAATAT-AAAAATAT-A
** * *
82266478 AAATCGTAAAAAAATATAAAAATGGTA
1 AAATTTTATAAAAATATAAAAAT-ATA
*
82266505 AAATTTTATAAAAATTGAAAAAAATTATA
1 AAATTTTATAAAAA-T-ATAAAAA-TATA
* *
82266534 AAATATT-TAGAAATATAAAAAATTATA
1 AAATTTTATAAAAATAT-AAAAA-TATA
82266561 AAATTTTATAAA
1 AAATTTTATAAA
82266573 GTCATAAGAA
Statistics
Matches: 96, Mismatches: 16, Indels: 20
0.73 0.12 0.15
Matches are distributed among these distances:
25 2 0.02
26 19 0.20
27 42 0.44
28 18 0.19
29 14 0.15
30 1 0.01
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.34
Consensus pattern (26 bp):
AAATTTTATAAAAATATAAAAATATA
Found at i:82266675 original size:11 final size:11
Alignment explanation
Indices: 82266655--82266687 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
82266645 AGAAGCATTT
82266655 TATAATTTTTA
1 TATAATTTTTA
*
82266666 TATAACTTTTA
1 TATAATTTTTA
82266677 T-TAATTTTTA
1 TATAATTTTTA
82266687 T
1 T
82266688 TTGTTTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (11 bp):
TATAATTTTTA
Found at i:82267076 original size:83 final size:84
Alignment explanation
Indices: 82266913--82267077 Score: 199
Period size: 84 Copynumber: 2.0 Consensus size: 84
82266903 ATAAGATGAG
* * *
82266913 GGGCTTAATTGTTTTTCTAAAAAATTTTGAGAATTTTTTTGATGTATTTTGAAAGTTCAAGTACC
1 GGGCTTAATTATTTTTCTAAAAAAGTTTGAGAATTTTTTTGATATATTTTGAAAGTTCAAGTACC
*
82266978 AAATGAGTGAAAAAAACAA
66 AAATAAGTGAAAAAAACAA
* * * * *
82266997 GGGCTTAATTATTTTT-TTAATAAGTTTGAGGACTTTTTTT-ATATATTTTGAAAGTTTAAGTGC
1 GGGCTTAATTATTTTTCTAAAAAAGTTTGA-GAATTTTTTTGATATATTTTGAAAGTTCAAGTAC
* *
82267060 TCAATTAAGTGTAAAAAA
65 -CAAATAAGTGAAAAAAA
82267078 GAAATAAACG
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
83 30 0.44
84 38 0.56
ACGTcount: A:0.36, C:0.06, G:0.16, T:0.42
Consensus pattern (84 bp):
GGGCTTAATTATTTTTCTAAAAAAGTTTGAGAATTTTTTTGATATATTTTGAAAGTTCAAGTACC
AAATAAGTGAAAAAAACAA
Found at i:82268639 original size:18 final size:18
Alignment explanation
Indices: 82268603--82268637 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
82268593 TTTACGATAA
82268603 CATTGATTTCTCATTTTT
1 CATTGATTTCTCATTTTT
*
82268621 CATTGA-TTCTTATTTTT
1 CATTGATTTCTCATTTTT
82268638 TCCATATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.17, C:0.14, G:0.06, T:0.63
Consensus pattern (18 bp):
CATTGATTTCTCATTTTT
Found at i:82269442 original size:281 final size:281
Alignment explanation
Indices: 82268939--82269485 Score: 1094
Period size: 281 Copynumber: 1.9 Consensus size: 281
82268929 CGATGTTGGA
82268939 AATTTGAGTGGAGACGATAGAATCGGAGACTTGTATGTAAATAAACAGTAGACTTCAAGGCACGA
1 AATTTGAGTGGAGACGATAGAATCGGAGACTTGTATGTAAATAAACAGTAGACTTCAAGGCACGA
82269004 ATAACGCTTTTCAAAGAGAACTATTTGCCCCCACACAAAGTTGCTAGAGGGTTAGGACATAGGTC
66 ATAACGCTTTTCAAAGAGAACTATTTGCCCCCACACAAAGTTGCTAGAGGGTTAGGACATAGGTC
82269069 CTCCCGGGATACAACGAAATTTTGAATATCCATTGATTAGCAAAATCAAGGAATTCCTTAACTCT
131 CTCCCGGGATACAACGAAATTTTGAATATCCATTGATTAGCAAAATCAAGGAATTCCTTAACTCT
82269134 TACTCTAGTTTTTGAAAATAAGATTGATTGTAATTATATATTTGTGAGCACTATAATGCCTCTAT
196 TACTCTAGTTTTTGAAAATAAGATTGATTGTAATTATATATTTGTGAGCACTATAATGCCTCTAT
82269199 TTATATGCACTCAATGAATAC
261 TTATATGCACTCAATGAATAC
82269220 AATTTGAGTGGAGACGATAGAATCGGAGACTTGTATGTAAATAAACAGTAGACTTCAAGGCACGA
1 AATTTGAGTGGAGACGATAGAATCGGAGACTTGTATGTAAATAAACAGTAGACTTCAAGGCACGA
82269285 ATAACGCTTTTCAAAGAGAACTATTTGCCCCCACACAAAGTTGCTAGAGGGTTAGGACATAGGTC
66 ATAACGCTTTTCAAAGAGAACTATTTGCCCCCACACAAAGTTGCTAGAGGGTTAGGACATAGGTC
82269350 CTCCCGGGATACAACGAAATTTTGAATATCCATTGATTAGCAAAATCAAGGAATTCCTTAACTCT
131 CTCCCGGGATACAACGAAATTTTGAATATCCATTGATTAGCAAAATCAAGGAATTCCTTAACTCT
82269415 TACTCTAGTTTTTGAAAATAAGATTGATTGTAATTATATATTTGTGAGCACTATAATGCCTCTAT
196 TACTCTAGTTTTTGAAAATAAGATTGATTGTAATTATATATTTGTGAGCACTATAATGCCTCTAT
82269480 TTATAT
261 TTATAT
82269486 TGGACATACT
Statistics
Matches: 266, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
281 266 1.00
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (281 bp):
AATTTGAGTGGAGACGATAGAATCGGAGACTTGTATGTAAATAAACAGTAGACTTCAAGGCACGA
ATAACGCTTTTCAAAGAGAACTATTTGCCCCCACACAAAGTTGCTAGAGGGTTAGGACATAGGTC
CTCCCGGGATACAACGAAATTTTGAATATCCATTGATTAGCAAAATCAAGGAATTCCTTAACTCT
TACTCTAGTTTTTGAAAATAAGATTGATTGTAATTATATATTTGTGAGCACTATAATGCCTCTAT
TTATATGCACTCAATGAATAC
Found at i:82272698 original size:30 final size:30
Alignment explanation
Indices: 82272662--82272723 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
82272652 GTCATTCGAT
82272662 TACTTGTTATTACCCTTTGAACCTTGAAAC
1 TACTTGTTATTACCCTTTGAACCTTGAAAC
82272692 TACTTGTTATTACCCTTTGAACCTTGAAAC
1 TACTTGTTATTACCCTTTGAACCTTGAAAC
82272722 TA
1 TA
82272724 ACTTTTGGCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.40
Consensus pattern (30 bp):
TACTTGTTATTACCCTTTGAACCTTGAAAC
Found at i:82277019 original size:20 final size:20
Alignment explanation
Indices: 82276994--82277035 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
82276984 ACAGAAACTT
82276994 AACTTAATATGAAATCCATG
1 AACTTAATATGAAATCCATG
82277014 AACTTAATATGAAATCCATG
1 AACTTAATATGAAATCCATG
82277034 AA
1 AA
82277036 TGGTAAGTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.48, C:0.14, G:0.10, T:0.29
Consensus pattern (20 bp):
AACTTAATATGAAATCCATG
Found at i:82279385 original size:15 final size:15
Alignment explanation
Indices: 82279365--82279395 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
82279355 AAGAACACGA
*
82279365 TAAGCCTTAGAGTGT
1 TAAGCCTTAGAATGT
82279380 TAAGCCTTAGAATGT
1 TAAGCCTTAGAATGT
82279395 T
1 T
82279396 GGGCGAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (15 bp):
TAAGCCTTAGAATGT
Found at i:82291548 original size:48 final size:48
Alignment explanation
Indices: 82291446--82291771 Score: 171
Period size: 48 Copynumber: 6.8 Consensus size: 48
82291436 TTATATGTGT
*
82291446 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATT---ATGAAA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG---CATTGAGATGAGA
*
82291492 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGA
* *
82291540 GCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCACGTAT-AGA-G-GT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA--T-TGAGATGAGA
* * *
82291586 G-TCAATGTAAGACCATGTTTGGGACATGGCATCGGC---GCGTAT-AGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAG-ATGAGA
* * * * ** * *
82291631 GGTGTCAGTATAATACCATGTTTGGGACATGGCATCGGCACAGATATGTGAAA
1 -G-CT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA--TGAGA
* ** * * ** *
82291684 GCTAGTATAAGACCATGTCTGGGACATGGTGTCGGCCTCGATTTCGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAT-GAGA
* * *
82291733 G-TCAGTGTAGGACTATGTCTGGGACATGGCATTGGCATT
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
82291772 ATACCCTATG
Statistics
Matches: 222, Mismatches: 32, Indels: 49
0.73 0.11 0.16
Matches are distributed among these distances:
43 1 0.00
44 1 0.00
45 6 0.03
46 31 0.14
47 42 0.19
48 69 0.31
49 33 0.15
50 33 0.15
51 2 0.01
52 2 0.01
53 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.26
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGA
Found at i:82291609 original size:94 final size:94
Alignment explanation
Indices: 82291446--82291621 Score: 257
Period size: 94 Copynumber: 1.9 Consensus size: 94
82291436 TTATATGTGT
*
82291446 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAAAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAAAGCCAATGTAAGACCATGTC
82291511 TGGGACATGGCATCGGCATTGAGATGAGA
66 TGGGACATGGCATCGGCATTGAGATGAGA
* * ** *
82291540 GCTAGTGTAAGACATGTTTGGGACATGCATCGG-CAC-GTATAGAGGTGTCAATGTAAGACCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTAT-GA-AAGCCAATGTAAGACCATG
*
82291603 TTTGGGACATGGCATCGGC
64 TCTGGGACATGGCATCGGC
82291622 GCGTATAGAG
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
92 3 0.04
93 5 0.07
94 65 0.89
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAAAGCCAATGTAAGACCATGTC
TGGGACATGGCATCGGCATTGAGATGAGA
Found at i:82297059 original size:47 final size:47
Alignment explanation
Indices: 82296952--82297286 Score: 571
Period size: 47 Copynumber: 7.1 Consensus size: 47
82296942 GAAATGATAG
82296952 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
82297001 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
82297048 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
82297095 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
82297142 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
82297189 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
82297236 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
82297283 TAAG
1 TAAG
82297287 TCCCGAAGGG
Statistics
Matches: 274, Mismatches: 12, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
47 239 0.87
49 35 0.13
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:82299499 original size:11 final size:11
Alignment explanation
Indices: 82299483--82299507 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
82299473 ATGATCAGAC
82299483 TAAAGATATTG
1 TAAAGATATTG
82299494 TAAAGATATTG
1 TAAAGATATTG
82299505 TAA
1 TAA
82299508 CAGTCCAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.16, T:0.36
Consensus pattern (11 bp):
TAAAGATATTG
Found at i:82300571 original size:6 final size:6
Alignment explanation
Indices: 82300560--82300773 Score: 428
Period size: 6 Copynumber: 35.7 Consensus size: 6
82300550 ATTGCATGAA
82300560 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
1 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
82300608 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
1 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
82300656 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
1 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
82300704 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
1 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
82300752 ATGTAT ATGTAT ATGTAT ATGT
1 ATGTAT ATGTAT ATGTAT ATGT
82300774 TTTTATGAAA
Statistics
Matches: 208, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 208 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (6 bp):
ATGTAT
Found at i:82300945 original size:48 final size:48
Alignment explanation
Indices: 82300889--82301065 Score: 221
Period size: 48 Copynumber: 3.7 Consensus size: 48
82300879 ATGTGAGTAT
* * *
82300889 TGAGATCCCGTATAAGACCAAATCTGGGATATGGCATCGGTATCGAAA
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCGGCATCGAAA
* * ** * *
82300937 TGAGATCCCGTTTAAGACCATATCAGGGATATAACATCAGCATTGAAA
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCGGCATCGAAA
* *
82300985 TGAGATCCCGTGCAAGACCATATCTGGGATATGGCATCGGCATC-AGTA
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCGGCATCGA-AA
* *
82301033 TGAGATCTCATGTAAGACCATATCTGGGATATG
1 TGAGATCCCGTGTAAGACCATATCTGGGATATG
82301066 AAATTAACAT
Statistics
Matches: 109, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
47 1 0.01
48 108 0.99
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (48 bp):
TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCGGCATCGAAA
Found at i:82301036 original size:96 final size:96
Alignment explanation
Indices: 82300889--82301064 Score: 255
Period size: 96 Copynumber: 1.8 Consensus size: 96
82300879 ATGTGAGTAT
* * * *
82300889 TGAGATCCCGTATAAGACCAAATCTGGGATATGGCATCGGTATCGAAATGAGATCCCGTTTAAGA
1 TGAGATCCCGTACAAGACCAAATCTGGGATATGGCATCGGCATCGAAATGAGATCCCATGTAAGA
82300954 CCATATCAGGGATATAACATCAGCATTGAAA
66 CCATATCAGGGATATAACATCAGCATTGAAA
* * * *
82300985 TGAGATCCCGTGCAAGACCATATCTGGGATATGGCATCGGCATC-AGTATGAGATCTCATGTAAG
1 TGAGATCCCGTACAAGACCAAATCTGGGATATGGCATCGGCATCGA-AATGAGATCCCATGTAAG
*
82301049 ACCATATCTGGGATAT
65 ACCATATCAGGGATAT
82301065 GAAATTAACA
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
95 1 0.01
96 69 0.99
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.25
Consensus pattern (96 bp):
TGAGATCCCGTACAAGACCAAATCTGGGATATGGCATCGGCATCGAAATGAGATCCCATGTAAGA
CCATATCAGGGATATAACATCAGCATTGAAA
Found at i:82301083 original size:48 final size:48
Alignment explanation
Indices: 82300889--82301100 Score: 196
Period size: 48 Copynumber: 4.4 Consensus size: 48
82300879 ATGTGAGTAT
* * ** * *
82300889 TGAGATCCCGTATAAGACCAAATCTGGGATATGGCATCGGTATCGAAA
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGAAATCAGCATCGAAA
* * *
82300937 TGAGATCCCGTTTAAGACCATATCAGGGATAT-AACATCAGCATTGAAA
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGAA-ATCAGCATCGAAA
* ** * *
82300985 TGAGATCCCGTGCAAGACCATATCTGGGATATGGCATCGGCATC-AGTA
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGAAATCAGCATCGA-AA
* * * * *
82301033 TGAGATCTCATGTAAGACCATATCTGGGATATGAAATTAACATCGATA
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGAAATCAGCATCGAAA
* *
82301081 TGAGGTCCCGTATAA-ACCAT
1 TGAGATCCCGTGTAAGACCAT
82301101 GTTTAGGACA
Statistics
Matches: 132, Mismatches: 28, Indels: 9
0.78 0.17 0.05
Matches are distributed among these distances:
47 6 0.05
48 125 0.95
49 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.25
Consensus pattern (48 bp):
TGAGATCCCGTGTAAGACCATATCTGGGATATGAAATCAGCATCGAAA
Found at i:82301084 original size:96 final size:96
Alignment explanation
Indices: 82300889--82301092 Score: 250
Period size: 96 Copynumber: 2.1 Consensus size: 96
82300879 ATGTGAGTAT
* * * *
82300889 TGAGATCCCGTATAAGACCAAATCTGGGATATGGCATCGGTATCGAAATGAGATCCCGTTTAAGA
1 TGAGATCCCGTACAAGACCAAATCTGGGATATGGCATCGGCATCGAAATGAGATCCCATGTAAGA
* *
82300954 CCATATCAGGGATATAACATCAGCATTGAAA
66 CCATATCAGGGATATAACATCAACATCGAAA
* * * *
82300985 TGAGATCCCGTGCAAGACCATATCTGGGATATGGCATCGGCATC-AGTATGAGATCTCATGTAAG
1 TGAGATCCCGTACAAGACCAAATCTGGGATATGGCATCGGCATCGA-AATGAGATCCCATGTAAG
* * *
82301049 ACCATATCTGGGATATGAA-ATTAACATCGATA
65 ACCATATCAGGGATAT-AACATCAACATCGAAA
*
82301081 TGAGGTCCCGTA
1 TGAGATCCCGTA
82301093 TAAACCATGT
Statistics
Matches: 91, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
95 1 0.01
96 88 0.97
97 2 0.02
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (96 bp):
TGAGATCCCGTACAAGACCAAATCTGGGATATGGCATCGGCATCGAAATGAGATCCCATGTAAGA
CCATATCAGGGATATAACATCAACATCGAAA
Found at i:82311624 original size:79 final size:78
Alignment explanation
Indices: 82311522--82311744 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
82311512 GCTCCTCGTT
* *
82311522 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
82311587 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
82311602 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
82311666 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * * *
82311680 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
82311743 GA
63 GA
82311745 CATCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
78 45 0.36
79 60 0.48
80 20 0.16
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:82311639 original size:39 final size:40
Alignment explanation
Indices: 82311522--82311744 Score: 280
Period size: 39 Copynumber: 5.7 Consensus size: 40
82311512 GCTCCTCGTT
* *
82311522 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
82311562 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
82311602 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
82311641 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
82311680 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
82311721 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
82311745 CATCATTCAA
Statistics
Matches: 167, Mismatches: 10, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.01
39 88 0.53
40 67 0.40
41 10 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:82319804 original size:72 final size:73
Alignment explanation
Indices: 82319716--82320020 Score: 253
Period size: 72 Copynumber: 4.2 Consensus size: 73
82319706 ATTAATTATC
* *
82319716 AAGTAAAATCGTTTATTTAATTATGTGTTTTTAAAAAGGTTAATTTAGTTCAATTTATT-AAGTT
1 AAGTAAAACCGTTTATTTAATTATGTGTTTTTAAAAAGATTAATTTAGTTCAATTTATTGAAGTT
82319780 TTGATATT
66 TTGATATT
** * *** * * * ** *
82319788 AAGCGAAACCGTTTATTTAGTTAT-ACATTTTCAGAAGCTTAATTTAGTTTGATTTATTGAAG-C
1 AAGTAAAACCGTTTATTTAATTATGTGTTTTTAAAAAGATTAATTTAGTTCAATTTATTGAAGTT
**
82319851 TTGATACA
66 TTGATATT
* * * ** * *
82319859 AAGTAAAACCGCTTGTTCAATTATGCATTTTTAAAAAAAATAATTTAGTTCAATTTATTGAA-TT
1 AAGTAAAACCGTTTATTTAATTATGTGTTTTTAAAAAGATTAATTTAGTTCAATTTATTGAAGTT
82319923 TTGATATT
66 TTGATATT
* * * * * * * ** *
82319931 AAGTAGAACCGTTTATTCAAGTTATATG-TTTTGAGAAGATTAAATTAATTTGATTTTTTG-AGT
1 AAGTAAAACCGTTTATTTAA-TTATGTGTTTTTAAAAAGATTAATTTAGTTCAATTTATTGAAGT
82319994 TTTGATATT
65 TTTGATATT
*
82320003 AAGTAAAATCGTTTATTT
1 AAGTAAAACCGTTTATTT
82320021 GGTAATATTA
Statistics
Matches: 176, Mismatches: 52, Indels: 10
0.74 0.22 0.04
Matches are distributed among these distances:
71 51 0.29
72 121 0.69
73 4 0.02
ACGTcount: A:0.35, C:0.07, G:0.13, T:0.45
Consensus pattern (73 bp):
AAGTAAAACCGTTTATTTAATTATGTGTTTTTAAAAAGATTAATTTAGTTCAATTTATTGAAGTT
TTGATATT
Found at i:82320191 original size:13 final size:13
Alignment explanation
Indices: 82320173--82320197 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82320163 ATGGGAATGA
82320173 ATTCAAATCTTAT
1 ATTCAAATCTTAT
82320186 ATTCAAATCTTA
1 ATTCAAATCTTA
82320198 ATTGTGTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (13 bp):
ATTCAAATCTTAT
Found at i:82320274 original size:35 final size:35
Alignment explanation
Indices: 82320206--82320274 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 35
82320196 TAATTGTGTT
*
82320206 ATTAATTTATTATTTTAAATTCTAAATTTAAATTC
1 ATTAATTTATTATTTTAAATTCTAAATTAAAATTC
* * *
82320241 ATTAATTT-TTATTTTTAGTTTTAAAGTTAAAATT
1 ATTAATTTATTATTTTAAATTCTAAA-TTAAAATT
82320275 TTTATATAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
34 14 0.48
35 15 0.52
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (35 bp):
ATTAATTTATTATTTTAAATTCTAAATTAAAATTC
Found at i:82323630 original size:5 final size:5
Alignment explanation
Indices: 82323622--82323653 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
82323612 TAATATTGAA
82323622 TTGTG TTGTG TTGTG TTGTG TTGTG TTGTG TT
1 TTGTG TTGTG TTGTG TTGTG TTGTG TTGTG TT
82323654 AATGAATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.38, T:0.62
Consensus pattern (5 bp):
TTGTG
Found at i:82323887 original size:24 final size:24
Alignment explanation
Indices: 82323860--82323906 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
82323850 ATTGAAATGG
82323860 ATTG-ATTTAATATGTGA-TGAATTT
1 ATTGAATTT-ATAT-TGATTGAATTT
82323884 ATTGAATTTATATTGATTGAATT
1 ATTGAATTTATATTGATTGAATT
82323907 GATATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 14 0.67
25 4 0.19
ACGTcount: A:0.34, C:0.00, G:0.15, T:0.51
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:82324184 original size:40 final size:39
Alignment explanation
Indices: 82324068--82324197 Score: 129
Period size: 40 Copynumber: 3.3 Consensus size: 39
82324058 CGAGTTGATG
* * *
82324068 AGACACTGGGTGTCAATCTATTACTTCAAATTAATTCGATG
1 AGACACTGGGTGTCAAT-TATTACTTCGAATT-ATCCGATA
* * ** *
82324109 AGATACTGGATGTCAA-T-TTACTTCGGGTTAGCCGATA
1 AGACACTGGGTGTCAATTATTACTTCGAATTATCCGATA
82324146 AGACACTGGGTGTCAAATTATTACTTCGAATTATCCGATA
1 AGACACTGGGTGTC-AATTATTACTTCGAATTATCCGATA
* *
82324186 AGGCACTAGGTG
1 AGACACTGGGTG
82324198 CCAAACTAGT
Statistics
Matches: 71, Mismatches: 15, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
37 17 0.24
38 11 0.15
39 2 0.03
40 27 0.38
41 14 0.20
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.32
Consensus pattern (39 bp):
AGACACTGGGTGTCAATTATTACTTCGAATTATCCGATA
Found at i:82326014 original size:21 final size:21
Alignment explanation
Indices: 82325988--82326039 Score: 104
Period size: 21 Copynumber: 2.5 Consensus size: 21
82325978 GTCAGCTAAA
82325988 AATGCATGATCACAATTATTC
1 AATGCATGATCACAATTATTC
82326009 AATGCATGATCACAATTATTC
1 AATGCATGATCACAATTATTC
82326030 AATGCATGAT
1 AATGCATGAT
82326040 TTAAAGTTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (21 bp):
AATGCATGATCACAATTATTC
Found at i:82328164 original size:5 final size:5
Alignment explanation
Indices: 82328154--82328210 Score: 114
Period size: 5 Copynumber: 11.4 Consensus size: 5
82328144 AAATGTTAAG
82328154 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
82328204 TATAT TA
1 TATAT TA
82328211 ATAAAACAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 52 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:82328302 original size:19 final size:19
Alignment explanation
Indices: 82328265--82328320 Score: 89
Period size: 19 Copynumber: 3.0 Consensus size: 19
82328255 CAAACGAAAC
82328265 AAAATAGAAAAA-GGA-AAG
1 AAAA-AGAAAAAGGGAGAAG
82328283 AAAAAGAAAAAGGGAGAAG
1 AAAAAGAAAAAGGGAGAAG
82328302 AAAAAGAAAAAGGGAGAAG
1 AAAAAGAAAAAGGGAGAAG
82328321 GGAGAAAAAC
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
17 7 0.19
18 7 0.19
19 22 0.61
ACGTcount: A:0.70, C:0.00, G:0.29, T:0.02
Consensus pattern (19 bp):
AAAAAGAAAAAGGGAGAAG
Found at i:82330048 original size:54 final size:54
Alignment explanation
Indices: 82329980--82330167 Score: 340
Period size: 54 Copynumber: 3.5 Consensus size: 54
82329970 TCTTACGGCA
* * * *
82329980 GGATTACCAATCCAGGTTAAATCCCTCATAACATAAACTCAAGGAGTATTGTCG
1 GGATTACCATTCCAGGCTAAATCCCTCATGACATAAATTCAAGGAGTATTGTCG
82330034 GGATTACCATTCCAGGCTAAATCCCTCATGACATAAATTCAAGGAGTATTGTCG
1 GGATTACCATTCCAGGCTAAATCCCTCATGACATAAATTCAAGGAGTATTGTCG
82330088 GGATTACCATTCCAGGCTAAATCCCTCATGACATAAATTCAAGGAGTATTGTCG
1 GGATTACCATTCCAGGCTAAATCCCTCATGACATAAATTCAAGGAGTATTGTCG
82330142 GGATTACCATTCCAGGCTAAATCCCT
1 GGATTACCATTCCAGGCTAAATCCCT
82330168 TACAACGACA
Statistics
Matches: 130, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
54 130 1.00
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (54 bp):
GGATTACCATTCCAGGCTAAATCCCTCATGACATAAATTCAAGGAGTATTGTCG
Found at i:82334236 original size:43 final size:43
Alignment explanation
Indices: 82334173--82334423 Score: 260
Period size: 43 Copynumber: 5.9 Consensus size: 43
82334163 CATTTTTGGA
* * *
82334173 AAAAGCGCCGTTAAAAGTCATGTTCTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCATGTTCTATAGCGGCGTTTGTGGG
* * *
82334216 AAAAGTGTCGCTAAAGGTCATGTTCTATAGCGGCGTTTCTGGG
1 AAAAGCGCCGCTAAAGGTCATGTTCTATAGCGGCGTTTGTGGG
* * *
82334259 AAAAGCGCCGCTAAAGGTCATGTCCTGTAGCGGCGTTTGTGAG
1 AAAAGCGCCGCTAAAGGTCATGTTCTATAGCGGCGTTTGTGGG
* ** *
82334302 AAAAGCGCCGCTAAAGGTCATG-TCATGTAG-TACTGTCTGT-GG
1 AAAAGCGCCGCTAAAGGTCATGTTC-TATAGCGGC-GTTTGTGGG
* * * * * **
82334344 AAAAGC-CCCCTAAAAGTCATGTTTTATAGTGGCGTTTTTGTC
1 AAAAGCGCCGCTAAAGGTCATGTTCTATAGCGGCGTTTGTGGG
82334386 AGAAA-CGCCGCTAAAGGTCATGTTCTATAGCGGCGTTT
1 A-AAAGCGCCGCTAAAGGTCATGTTCTATAGCGGCGTTT
82334424 ATATGGAAAA
Statistics
Matches: 170, Mismatches: 31, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
41 21 0.12
42 13 0.08
43 136 0.80
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.29
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGGTCATGTTCTATAGCGGCGTTTGTGGG
Found at i:82336450 original size:5 final size:5
Alignment explanation
Indices: 82336442--82336474 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
82336432 ATATGGGATG
*
82336442 TTTTG TTTTA TTTTA TTTTA TTTTA TTTTA TTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTT
82336475 CTTTAAGTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:82341512 original size:37 final size:37
Alignment explanation
Indices: 82341451--82341596 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
82341441 TACGTATGAT
* *
82341451 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
82341486 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
82341523 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
82341560 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
82341597 TAAAGCTATC
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 92 0.88
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:82341613 original size:46 final size:46
Alignment explanation
Indices: 82341560--82341828 Score: 340
Period size: 46 Copynumber: 5.6 Consensus size: 46
82341550 TAAGTGTAGC
* **
82341560 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
82341606 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
82341652 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
82341704 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
82341750 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
82341802 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
82341829 AGTACTCAAA
Statistics
Matches: 199, Mismatches: 12, Indels: 24
0.85 0.05 0.10
Matches are distributed among these distances:
46 112 0.56
48 1 0.01
49 2 0.01
50 1 0.01
52 83 0.42
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:82341679 original size:52 final size:52
Alignment explanation
Indices: 82341603--82341822 Score: 299
Period size: 52 Copynumber: 4.3 Consensus size: 52
82341593 TAGCTAAAGC
* *
82341603 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
82341656 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
82341708 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
82341754 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
82341806 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
82341823 ATCAGAAGTA
Statistics
Matches: 148, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
46 43 0.29
49 1 0.01
52 86 0.58
53 18 0.12
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:82341725 original size:98 final size:98
Alignment explanation
Indices: 82341560--82341828 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
82341550 TAAGTGTAGC
* * *
82341560 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACT
82341625 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
**
82341659 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
*
82341724 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
82341757 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
82341822 GATCAGA
66 GATCAGA
82341829 AGTACTCAAA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 151 0.94
99 9 0.06
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:82345009 original size:49 final size:50
Alignment explanation
Indices: 82344954--82345157 Score: 241
Period size: 49 Copynumber: 4.0 Consensus size: 50
82344944 TTCGTTTTCT
*
82344954 CGATGCCATAGTCCAACTATGGTCTTACACGTAATCACA-AATCACATAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
* * *
82345003 CGATGCCATAGCCCAACTATGGTCTTACACGAAATCACA-TATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
* *
82345052 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACACATATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACAC-G--T---A-ATCACACA-ATCACATAC
* * *
82345110 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCACAT
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACAT
82345158 GTTCACATGT
Statistics
Matches: 136, Mismatches: 10, Indels: 17
0.83 0.06 0.10
Matches are distributed among these distances:
49 74 0.54
50 7 0.05
51 7 0.05
52 1 0.01
55 1 0.01
56 6 0.04
57 1 0.01
58 39 0.29
ACGTcount: A:0.32, C:0.30, G:0.14, T:0.24
Consensus pattern (50 bp):
CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
Found at i:82345124 original size:58 final size:59
Alignment explanation
Indices: 82345038--82345156 Score: 231
Period size: 58 Copynumber: 2.0 Consensus size: 59
82345028 TACACGAAAT
82345038 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAT-ATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
82345096 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
82345155 CA
1 CA
82345157 TGTTCACATG
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
58 54 0.90
59 6 0.10
ACGTcount: A:0.32, C:0.31, G:0.13, T:0.24
Consensus pattern (59 bp):
CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
Found at i:82345137 original size:28 final size:28
Alignment explanation
Indices: 82345047--82345137 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
82345037 TCACATATCA
82345047 CTTACCGATGCCATAGCCCAGCTATGGT
1 CTTACCGATGCCATAGCCCAGCTATGGT
* * **
82345075 CTTACACGGAAT-CACATATCACA-CATAT-CA
1 CTTAC-C-G-ATGC-CATAGCCCAGC-TATGGT
82345105 CTTACCGATGCCATAGCCCAGCTATGGT
1 CTTACCGATGCCATAGCCCAGCTATGGT
82345133 CTTAC
1 CTTAC
82345138 ACGGAATCAC
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
27 12 0.26
28 13 0.28
29 2 0.04
30 8 0.17
31 12 0.26
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.25
Consensus pattern (28 bp):
CTTACCGATGCCATAGCCCAGCTATGGT
Found at i:82346471 original size:37 final size:37
Alignment explanation
Indices: 82346410--82346555 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
82346400 TACGTATGAT
* *
82346410 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
82346445 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
82346482 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
82346519 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
82346556 TAAAGCTATC
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 92 0.88
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:82346572 original size:46 final size:46
Alignment explanation
Indices: 82346519--82346787 Score: 340
Period size: 46 Copynumber: 5.6 Consensus size: 46
82346509 TAAGTGTAGC
* **
82346519 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
82346565 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
82346611 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
82346663 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
82346709 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
82346761 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
82346788 AGTACTCAAA
Statistics
Matches: 199, Mismatches: 12, Indels: 24
0.85 0.05 0.10
Matches are distributed among these distances:
46 112 0.56
48 1 0.01
49 2 0.01
50 1 0.01
52 83 0.42
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:82346638 original size:52 final size:52
Alignment explanation
Indices: 82346562--82346781 Score: 299
Period size: 52 Copynumber: 4.3 Consensus size: 52
82346552 TAGCTAAAGC
* *
82346562 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
82346615 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
82346667 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
82346713 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
82346765 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
82346782 ATCAGAAGTA
Statistics
Matches: 148, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
46 43 0.29
49 1 0.01
52 86 0.58
53 18 0.12
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:82346684 original size:98 final size:98
Alignment explanation
Indices: 82346519--82346787 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
82346509 TAAGTGTAGC
* * *
82346519 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACT
82346584 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
**
82346618 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
*
82346683 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
82346716 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
82346781 GATCAGA
66 GATCAGA
82346788 AGTACTCAAA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 151 0.94
99 9 0.06
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:82355721 original size:17 final size:16
Alignment explanation
Indices: 82355695--82355733 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
82355685 GTAGATGAAT
* *
82355695 TTAAACTTAAAAAGTAA
1 TTAAAATTAAAAA-AAA
82355712 TTAAAATTAAAAAAAA
1 TTAAAATTAAAAAAAA
82355728 TTAAAA
1 TTAAAA
82355734 CCCCTAACTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.28
Consensus pattern (16 bp):
TTAAAATTAAAAAAAA
Found at i:82356469 original size:23 final size:23
Alignment explanation
Indices: 82356443--82356490 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
82356433 GTCATTATAT
82356443 ATGAACTCAATTGTGGATATTTC
1 ATGAACTCAATTGTGGATATTTC
*
82356466 ATGAACTCAGTTGTGGATATTTC
1 ATGAACTCAATTGTGGATATTTC
82356489 AT
1 AT
82356491 TTTTTTAATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.40
Consensus pattern (23 bp):
ATGAACTCAATTGTGGATATTTC
Found at i:82357748 original size:82 final size:82
Alignment explanation
Indices: 82357633--82357836 Score: 300
Period size: 82 Copynumber: 2.5 Consensus size: 82
82357623 GGTATACATC
* * *
82357633 TTTCAACAAATTATTTAAAAAAAACAAACAAAATATGTTATACTAACAAAATGATCCTATAATAG
1 TTTCAACAAATCATTT-CAAAAAACAAACAAAATATGTTATACTAACAAAATGATCCTATAACAG
*
82357698 TAAGATGTTAACCAACCA
65 TAAGATATTAACCAACCA
* * * * *
82357716 TTTGAACAAATCATTTCAAAACACAAAAAAAATATGTTATACTAACAAAATGATCTTATAGCAGT
1 TTTCAACAAATCATTTCAAAAAACAAACAAAATATGTTATACTAACAAAATGATCCTATAACAGT
*
82357781 AATATATTAACCAACCA
66 AAGATATTAACCAACCA
*
82357798 TTTCAACAAATCATTTCAAAAAACAAACAAAATGTGTTA
1 TTTCAACAAATCATTTCAAAAAACAAACAAAATATGTTA
82357837 ACATCTCAAT
Statistics
Matches: 107, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
82 93 0.87
83 14 0.13
ACGTcount: A:0.51, C:0.15, G:0.06, T:0.28
Consensus pattern (82 bp):
TTTCAACAAATCATTTCAAAAAACAAACAAAATATGTTATACTAACAAAATGATCCTATAACAGT
AAGATATTAACCAACCA
Found at i:82358243 original size:158 final size:158
Alignment explanation
Indices: 82357913--82358338 Score: 463
Period size: 157 Copynumber: 2.7 Consensus size: 158
82357903 ATGCCATCAT
* * * * *
82357913 TTTTTGGCTTCTAGTTCTCATACTCATACCAGACT--GAGAACAAAAATCAGAACCCCAAATTAG
1 TTTTGGGCTTCTAGTTATGATACTCATACCAGACTAAGACAAAAAAAATCAGAACCCCAAATTAG
* * * * *
82357976 ATTTAAAATAATTTGGAATTGACATTAAAAAAGTGTTTACGA-ATACCTGTGATCCAGTTTTGTT
66 A-TTAAAATATTTTGGAATTGACATT-AAAAAGTGTTTACGATATACCTGCGATCCAATTGTATT
* * * *
82358040 AGGCTAAATGGATGGTGTTCTGTTGTTCTC
129 AGGCTAAATGCATGGTGCTATGTTGTTATC
* * *
82358070 TTTTTGGCTTCTAGTT-TGTGTACTCGTACCAGACTAAGACAAAAAAAAT-AGAACCCCAAATTA
1 TTTTGGGCTTCTAGTTATG-ATACTCATACCAGACTAAGACAAAAAAAATCAGAACCCCAAATTA
* **
82358133 GATTAAAATATTTTTGAATTGACATTAAAATAGTGCATACGATATACCTGCGATCCAATTGTATT
65 GATTAAAATATTTTGGAATTGACATTAAAA-AGTGTTTACGATATACCTGCGATCCAATTGTATT
* *
82358198 AGGTTGAATGCATGGTGCTATGTTGTTAT-
129 AGGCTAAATGCATGGTGCTATGTTGTTATC
* * * * *
82358227 TTTTGGGGCTTTTAGTTATGATACTCCTACCAAACTAAGAC-CAAAAAATCA-AAACCCAAATTA
1 TTTT-GGGCTTCTAGTTATGATACTCATACCAGACTAAGACAAAAAAAATCAGAACCCCAAATTA
** * *
82358290 GATTTTAATATTTTGGAATTGAAAATGAAAAAGTGTTTACGATATACCT
65 GATTAAAATATTTTGGAATTG-ACATTAAAAAGTGTTTACGATATACCT
82358339 ATGTTCTTAT
Statistics
Matches: 227, Mismatches: 33, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
156 5 0.02
157 117 0.52
158 93 0.41
159 12 0.05
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.35
Consensus pattern (158 bp):
TTTTGGGCTTCTAGTTATGATACTCATACCAGACTAAGACAAAAAAAATCAGAACCCCAAATTAG
ATTAAAATATTTTGGAATTGACATTAAAAAGTGTTTACGATATACCTGCGATCCAATTGTATTAG
GCTAAATGCATGGTGCTATGTTGTTATC
Found at i:82363262 original size:18 final size:20
Alignment explanation
Indices: 82363239--82363276 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
82363229 AAATGACAAA
82363239 AATATT-TTTT-TTATTTTT
1 AATATTATTTTCTTATTTTT
82363257 AATATTATTTTCTTATTTTT
1 AATATTATTTTCTTATTTTT
82363277 TTCTCTCTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.33
19 4 0.22
20 8 0.44
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (20 bp):
AATATTATTTTCTTATTTTT
Found at i:82363396 original size:30 final size:30
Alignment explanation
Indices: 82363360--82363422 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
82363350 ACTTATTTTA
82363360 TTGTTAATTTTATTATTATTTTAAAGACAT
1 TTGTTAATTTTATTATTATTTTAAAGACAT
* * *
82363390 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTATTATTATTTTAAAGACAT
82363420 TTG
1 TTG
82363423 CTTGTTAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTATTATTATTTTAAAGACAT
Found at i:82363568 original size:11 final size:12
Alignment explanation
Indices: 82363546--82363578 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
82363536 TATATATTTT
*
82363546 AAATTTATATAA
1 AAATTAATATAA
82363558 AAA-TAATATAA
1 AAATTAATATAA
82363569 AAATTAATAT
1 AAATTAATAT
82363579 GGACGAGCCG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
AAATTAATATAA
Found at i:82364202 original size:34 final size:34
Alignment explanation
Indices: 82364159--82364229 Score: 124
Period size: 34 Copynumber: 2.1 Consensus size: 34
82364149 GGGTATCAGT
*
82364159 TTGATGAGAGGTGAAATAGCAATTGACTAATGAA
1 TTGATGAGAGGTAAAATAGCAATTGACTAATGAA
*
82364193 TTGATGAGAGGTAAAATAGCAATTGAGTAATGAA
1 TTGATGAGAGGTAAAATAGCAATTGACTAATGAA
82364227 TTG
1 TTG
82364230 GTACAAGTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.41, C:0.04, G:0.27, T:0.28
Consensus pattern (34 bp):
TTGATGAGAGGTAAAATAGCAATTGACTAATGAA
Found at i:82364302 original size:15 final size:15
Alignment explanation
Indices: 82364262--82364302 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
82364252 GTTAGACTGA
82364262 TTTTTAA-AATTTGT
1 TTTTTAATAATTTGT
82364276 TTTTTAAT-ATTT-T
1 TTTTTAATAATTTGT
82364289 TATTTTAATAATTT
1 T-TTTTAATAATTT
82364303 ATTTGCTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 2 0.08
14 18 0.75
15 4 0.17
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.68
Consensus pattern (15 bp):
TTTTTAATAATTTGT
Found at i:82364726 original size:16 final size:16
Alignment explanation
Indices: 82364705--82364735 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
82364695 ACATGGAAAA
*
82364705 ATAAAAAATTTTAAAT
1 ATAAAAAATATTAAAT
82364721 ATAAAAAATATTAAA
1 ATAAAAAATATTAAA
82364736 ATTTAATGTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
ATAAAAAATATTAAAT
Found at i:82365946 original size:46 final size:46
Alignment explanation
Indices: 82365879--82365981 Score: 197
Period size: 46 Copynumber: 2.2 Consensus size: 46
82365869 TTTTAAACTC
82365879 TTAAATTTATATTATTTATCAAATTACTTCAAAATAAATAGAAAAA
1 TTAAATTTATATTATTTATCAAATTACTTCAAAATAAATAGAAAAA
82365925 TTAAATTTATATTATTTATCAAATTACTTCAAAATAAATAGAAAAA
1 TTAAATTTATATTATTTATCAAATTACTTCAAAATAAATAGAAAAA
82365971 TTAATATTTAT
1 TTAA-ATTTAT
82365982 TAATTTTACT
Statistics
Matches: 56, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
46 50 0.89
47 6 0.11
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (46 bp):
TTAAATTTATATTATTTATCAAATTACTTCAAAATAAATAGAAAAA
Found at i:82365971 original size:23 final size:23
Alignment explanation
Indices: 82365899--82365973 Score: 62
Period size: 23 Copynumber: 3.3 Consensus size: 23
82365889 ATTATTTATC
82365899 AAATTACTTCAAAATAAATAGAA
1 AAATTACTTCAAAATAAATAGAA
* * * * ** **
82365922 AAATTAAATTTATATTATTTA-TC
1 AAATT-ACTTCAAAATAAATAGAA
82365945 AAATTACTTCAAAATAAATAGAA
1 AAATTACTTCAAAATAAATAGAA
82365968 AAATTA
1 AAATTA
82365974 ATATTTATTA
Statistics
Matches: 34, Mismatches: 16, Indels: 4
0.63 0.30 0.07
Matches are distributed among these distances:
22 9 0.26
23 16 0.47
24 9 0.26
ACGTcount: A:0.56, C:0.07, G:0.03, T:0.35
Consensus pattern (23 bp):
AAATTACTTCAAAATAAATAGAA
Found at i:82367907 original size:41 final size:41
Alignment explanation
Indices: 82367845--82367934 Score: 171
Period size: 41 Copynumber: 2.2 Consensus size: 41
82367835 GTGAATTAGT
82367845 AACAGAACTAGAAATGAAATGCCATATTCATTGTGACATTTA
1 AACA-AACTAGAAATGAAATGCCATATTCATTGTGACATTTA
82367887 AACAAACTAGAAATGAAATGCCATATTCATTGTGACATTTA
1 AACAAACTAGAAATGAAATGCCATATTCATTGTGACATTTA
82367928 AACAAAC
1 AACAAAC
82367935 ATTGTCCAAT
Statistics
Matches: 48, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
41 44 0.92
42 4 0.08
ACGTcount: A:0.46, C:0.16, G:0.12, T:0.27
Consensus pattern (41 bp):
AACAAACTAGAAATGAAATGCCATATTCATTGTGACATTTA
Found at i:82370579 original size:27 final size:27
Alignment explanation
Indices: 82370521--82370582 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
82370511 TGTCCTAGCA
*
82370521 GACTACCTTGTGTTTACTATCCCGACG
1 GACTACCCTGTGTTTACTATCCCGACG
* * * **
82370548 TACTACCCTGTGTTTATTGTCCCGGTG
1 GACTACCCTGTGTTTACTATCCCGACG
82370575 GACTACCC
1 GACTACCC
82370583 CGTTTAGTGT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.16, C:0.31, G:0.19, T:0.34
Consensus pattern (27 bp):
GACTACCCTGTGTTTACTATCCCGACG
Found at i:82375007 original size:20 final size:21
Alignment explanation
Indices: 82374982--82375020 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
82374972 AATTTGTTTA
82374982 TTAAATATTTATG-ATTATTT
1 TTAAATATTTATGAATTATTT
*
82375002 TTAAATTTTTATGAATTAT
1 TTAAATATTTATGAATTAT
82375021 ACATAGATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (21 bp):
TTAAATATTTATGAATTATTT
Done.