Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 249 of 322
Found at i:82717268 original size:58 final size:58
Alignment explanation
Indices: 82717200--82717316 Score: 216
Period size: 58 Copynumber: 2.0 Consensus size: 58
82717190 TATGGTTTGA
*
82717200 AATGTTGAAAGATTATGATTTGATAATTGAATATCACTCTGAAAGAGTGAATGTGACT
1 AATGTTGAAAGATTATGATTTGATAATTGAATATCACTCGGAAAGAGTGAATGTGACT
*
82717258 AATGTTGAAAGATTATGATTTGATAATTGAATATCACTCGGAAAGATTGAATGTGACT
1 AATGTTGAAAGATTATGATTTGATAATTGAATATCACTCGGAAAGAGTGAATGTGACT
82717316 A
1 A
82717317 GAGATATTCT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.38, C:0.07, G:0.21, T:0.34
Consensus pattern (58 bp):
AATGTTGAAAGATTATGATTTGATAATTGAATATCACTCGGAAAGAGTGAATGTGACT
Found at i:82724585 original size:22 final size:22
Alignment explanation
Indices: 82724560--82724624 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 22
82724550 AGAAAATTAG
*
82724560 GATTATAGTTTTTCTTGTGATA
1 GATTATAGATTTTCTTGTGATA
*
82724582 GATTA-AAATTTT-TT-T-AT-
1 GATTATAGATTTTCTTGTGATA
*
82724599 -ATTATAGCTTTTCTTGTGATA
1 GATTATAGATTTTCTTGTGATA
82724620 GATTA
1 GATTA
82724625 ATTTTTTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 12
0.67 0.08 0.24
Matches are distributed among these distances:
16 4 0.12
17 5 0.15
18 4 0.12
19 2 0.06
20 4 0.12
21 5 0.15
22 9 0.27
ACGTcount: A:0.28, C:0.05, G:0.14, T:0.54
Consensus pattern (22 bp):
GATTATAGATTTTCTTGTGATA
Found at i:82724604 original size:38 final size:38
Alignment explanation
Indices: 82724561--82724636 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 38
82724551 GAAAATTAGG
*
82724561 ATTATAGTTTTTCTTGTGATAGATTAAAATTTTTTTAT
1 ATTATAGCTTTTCTTGTGATAGATTAAAATTTTTTTAT
**
82724599 ATTATAGCTTTTCTTGTGATAGATTAATTTTTTTTTAT
1 ATTATAGCTTTTCTTGTGATAGATTAAAATTTTTTTAT
82724637 GTAAGATTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.26, C:0.04, G:0.11, T:0.59
Consensus pattern (38 bp):
ATTATAGCTTTTCTTGTGATAGATTAAAATTTTTTTAT
Found at i:82727325 original size:8 final size:8
Alignment explanation
Indices: 82727312--82727349 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
82727302 AAAGGAAATT
82727312 TGAATAAA
1 TGAATAAA
*
82727320 TGAATAAG
1 TGAATAAA
82727328 TGAATAAA
1 TGAATAAA
*
82727336 -GAATAAG
1 TGAATAAA
82727343 TGAATAA
1 TGAATAA
82727350 TTGGTCCTGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
7 6 0.23
8 20 0.77
ACGTcount: A:0.58, C:0.00, G:0.18, T:0.24
Consensus pattern (8 bp):
TGAATAAA
Found at i:82727341 original size:15 final size:16
Alignment explanation
Indices: 82727312--82727349 Score: 69
Period size: 15 Copynumber: 2.4 Consensus size: 16
82727302 AAAGGAAATT
82727312 TGAATAAATGAATAAG
1 TGAATAAATGAATAAG
82727328 TGAATAAA-GAATAAG
1 TGAATAAATGAATAAG
82727343 TGAATAA
1 TGAATAA
82727350 TTGGTCCTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 14 0.64
16 8 0.36
ACGTcount: A:0.58, C:0.00, G:0.18, T:0.24
Consensus pattern (16 bp):
TGAATAAATGAATAAG
Found at i:82732701 original size:109 final size:109
Alignment explanation
Indices: 82732510--82732727 Score: 427
Period size: 109 Copynumber: 2.0 Consensus size: 109
82732500 ATGGTTATTT
82732510 AATAAATCAAAGGTATGTTAATGTGATTTTTATATAATTGTTTATGAAATTAAACTGATAAGTGC
1 AATAAATCAAAGGTATGTTAATGTGATTTTTATATAATTGTTTATGAAATTAAACTGATAAGTGC
82732575 ATTGTATAGTTAACCCATGGTTTAAATTCATGAATTATTGAACA
66 ATTGTATAGTTAACCCATGGTTTAAATTCATGAATTATTGAACA
*
82732619 AATAAATCAAATGTATGTTAATGTGATTTTTATATAATTGTTTATGAAATTAAACTGATAAGTGC
1 AATAAATCAAAGGTATGTTAATGTGATTTTTATATAATTGTTTATGAAATTAAACTGATAAGTGC
82732684 ATTGTATAGTTAACCCATGGTTTAAATTCATGAATTATTGAACA
66 ATTGTATAGTTAACCCATGGTTTAAATTCATGAATTATTGAACA
82732728 TATGTGCATT
Statistics
Matches: 108, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
109 108 1.00
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.40
Consensus pattern (109 bp):
AATAAATCAAAGGTATGTTAATGTGATTTTTATATAATTGTTTATGAAATTAAACTGATAAGTGC
ATTGTATAGTTAACCCATGGTTTAAATTCATGAATTATTGAACA
Found at i:82734648 original size:56 final size:56
Alignment explanation
Indices: 82734562--82734737 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
82734552 ACAAGGGATG
82734562 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
82734618 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
82734674 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
82734730 ATGGGCAA
1 ATGGGCAA
82734738 TAAACTAATA
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:82734772 original size:112 final size:111
Alignment explanation
Indices: 82734562--82734776 Score: 258
Period size: 112 Copynumber: 1.9 Consensus size: 111
82734552 ACAAGGGATG
82734562 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAAA
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAAA
* * * ** ** ***
82734627 ACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
66 ACATCTAATGAAAAATGAAGTGAGAAAACAAAAA-AAAATAAGAAGC
*
82734674 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCATGGGCAAT
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAA-
82734739 AA-A-CTAAT-AAGAAATGGAAG-GAAGAAAACAAAAAAAAA
65 AACATCTAATGAA-AAAT-GAAGTG-AGAAAACAAAAAAAAA
82734777 NACGAAACGT
Statistics
Matches: 88, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
110 2 0.02
111 11 0.12
112 73 0.83
113 2 0.02
ACGTcount: A:0.50, C:0.08, G:0.21, T:0.20
Consensus pattern (111 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAAA
ACATCTAATGAAAAATGAAGTGAGAAAACAAAAAAAAATAAGAAGC
Found at i:82740500 original size:56 final size:56
Alignment explanation
Indices: 82740414--82740530 Score: 225
Period size: 56 Copynumber: 2.1 Consensus size: 56
82740404 ACAAGGGATG
82740414 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
82740470 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
82740526 ATGGG
1 ATGGG
82740531 AAATAAACTA
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 60 1.00
ACGTcount: A:0.44, C:0.09, G:0.24, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:82741764 original size:39 final size:40
Alignment explanation
Indices: 82741663--82741847 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
82741653 TCGAATGATG
* * * * *
82741663 TCCGAGCTAAGTCCCGAAGG-TTTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
82741702 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
82741743 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
82741782 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
82741821 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
82741848 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.29
40 77 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:82741869 original size:79 final size:79
Alignment explanation
Indices: 82741716--82741880 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
82741706 GGACTAAGAT
* **
82741716 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
82741781 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
82741795 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
82741858 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
82741874 CCGAAGG
1 CCGAAGG
82741881 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:82744605 original size:97 final size:97
Alignment explanation
Indices: 82744460--82744690 Score: 275
Period size: 97 Copynumber: 2.4 Consensus size: 97
82744450 AAAAGTTGTT
* * *
82744460 AATACGTTGTGGATGAACCACTAGTCATTGTAAATAAACTACCAACTAAAACATGTTGCGGATGA
1 AATAAGTTGTGGATGAACCACTGGTCATTGGAAATAAACTACCAACTAAAACATGTTGCGGATGA
* * *
82744525 ACTACTGGTTGTGCAGATAAATTGTTGACTAA
66 ACTACTGGTCGTGCAGATAAACTGTCGACTAA
* * * * ** * * * * *
82744557 AATATGTTGTGGATGAACCATTGGTCGTTGGAGATAAACTGTCGACTAAAATATTTTGTGGGTGA
1 AATAAGTTGTGGATGAACCACTGGTCATTGGAAATAAACTACCAACTAAAACATGTTGCGGATGA
82744622 ACTACTGGTCGTGCAGATAAACTGTCGACTAA
66 ACTACTGGTCGTGCAGATAAACTGTCGACTAA
* * *
82744654 AATAAATTATGGATGAACCACTGGTCA-TGCAAATAAA
1 AATAAGTTGTGGATGAACCACTGGTCATTGGAAATAAA
82744691 TTGTTGACAC
Statistics
Matches: 111, Mismatches: 23, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
96 8 0.07
97 103 0.93
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (97 bp):
AATAAGTTGTGGATGAACCACTGGTCATTGGAAATAAACTACCAACTAAAACATGTTGCGGATGA
ACTACTGGTCGTGCAGATAAACTGTCGACTAA
Found at i:82744606 original size:49 final size:48
Alignment explanation
Indices: 82744460--82744690 Score: 228
Period size: 48 Copynumber: 4.8 Consensus size: 48
82744450 AAAAGTTGTT
* * * * * ** *
82744460 AATACGTTGTGGATGAACCACTAGTCATTGTAAATAAACTACCAACTAA
1 AATATGTTGTGGATGAACCACTGGTC-GTGCAGATAAACTGTCGACTAA
* * * * * *
82744509 AACATGTTGCGGATGAACTACTGGTTGTGCAGATAAATTGTTGACTAA
1 AATATGTTGTGGATGAACCACTGGTCGTGCAGATAAACTGTCGACTAA
* *
82744557 AATATGTTGTGGATGAACCATTGGTCGTTGGAGATAAACTGTCGACTAA
1 AATATGTTGTGGATGAACCACTGGTCG-TGCAGATAAACTGTCGACTAA
* * *
82744606 AATATTTTGTGGGTGAACTACTGGTCGTGCAGATAAACTGTCGACTAA
1 AATATGTTGTGGATGAACCACTGGTCGTGCAGATAAACTGTCGACTAA
** * * *
82744654 AATAAATTATGGATGAACCACTGGTCATGCAAATAAA
1 AATATGTTGTGGATGAACCACTGGTCGTGCAGATAAA
82744691 TTGTTGACAC
Statistics
Matches: 147, Mismatches: 34, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
48 86 0.59
49 61 0.41
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (48 bp):
AATATGTTGTGGATGAACCACTGGTCGTGCAGATAAACTGTCGACTAA
Found at i:82744748 original size:17 final size:17
Alignment explanation
Indices: 82744726--82744764 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
82744716 CATCCCACCC
82744726 CATGCAATGTAACATAA
1 CATGCAATGTAACATAA
82744743 CATGCAATGTAACATAA
1 CATGCAATGTAACATAA
82744760 CATGC
1 CATGC
82744765 TTATAGCAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.44, C:0.21, G:0.13, T:0.23
Consensus pattern (17 bp):
CATGCAATGTAACATAA
Found at i:82757528 original size:15 final size:15
Alignment explanation
Indices: 82757508--82757582 Score: 75
Period size: 15 Copynumber: 5.0 Consensus size: 15
82757498 CATAATATCG
*
82757508 TATCTTGGGTTTCTT
1 TATCTTGGATTTCTT
*
82757523 TATCTTGGATCTCTT
1 TATCTTGGATTTCTT
82757538 TAT-TCTGGATTTCTT
1 TATCT-TGGATTTCTT
*
82757553 TAT-TCTGGGTTT-TT
1 TATCT-TGGATTTCTT
82757567 CTATCTTGGATTTCTT
1 -TATCTTGGATTTCTT
82757583 GTTATCTTTG
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
14 3 0.06
15 45 0.88
16 3 0.06
ACGTcount: A:0.11, C:0.15, G:0.16, T:0.59
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:82761555 original size:60 final size:60
Alignment explanation
Indices: 82761482--82761600 Score: 220
Period size: 60 Copynumber: 2.0 Consensus size: 60
82761472 TGATGTTATG
82761482 TTTGTTAAATGGTTGTATAATTGTATTATAAGTCCGATAATGCTCCTTAACCATATTCTT
1 TTTGTTAAATGGTTGTATAATTGTATTATAAGTCCGATAATGCTCCTTAACCATATTCTT
* *
82761542 TTTGTTAAATGGTTGTATAATTGTATTATAAGTCCGATAATGCTCTTTAACCATGTTCT
1 TTTGTTAAATGGTTGTATAATTGTATTATAAGTCCGATAATGCTCCTTAACCATATTCT
82761601 GGCATTGAAT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.28, C:0.13, G:0.14, T:0.45
Consensus pattern (60 bp):
TTTGTTAAATGGTTGTATAATTGTATTATAAGTCCGATAATGCTCCTTAACCATATTCTT
Found at i:82762156 original size:6 final size:6
Alignment explanation
Indices: 82762125--82762181 Score: 53
Period size: 6 Copynumber: 9.7 Consensus size: 6
82762115 AAACATAAAC
* * * * * *
82762125 AAATAA GAATAA CATTAA CAAT-A AAATAA AAATGA AAGTAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
82762172 AAATAA AAAT
1 AAATAA AAAT
82762182 TTTGAAGTTA
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
5 4 0.10
6 37 0.90
ACGTcount: A:0.72, C:0.04, G:0.05, T:0.19
Consensus pattern (6 bp):
AAATAA
Found at i:82789945 original size:27 final size:26
Alignment explanation
Indices: 82789900--82789987 Score: 77
Period size: 27 Copynumber: 3.3 Consensus size: 26
82789890 CCCTGTTTAG
* *
82789900 AATACTTTAGTTTACTAAAATTACCGA
1 AATACCTTAGTTT-GTAAAATTACCGA
* *
82789927 AATACGCTTAGTTTGTAAAAATACTGA
1 AATAC-CTTAGTTTGTAAAATTACCGA
* * **
82789954 AATACCCTCGATTTGTAAAATTACTAA
1 AATACCTTAG-TTTGTAAAATTACCGA
82789981 AATACCT
1 AATACCT
82789988 AAAATTACCA
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
26 3 0.06
27 40 0.80
28 7 0.14
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.34
Consensus pattern (26 bp):
AATACCTTAGTTTGTAAAATTACCGA
Found at i:82790004 original size:18 final size:18
Alignment explanation
Indices: 82789969--82790004 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
82789959 CCTCGATTTG
*
82789969 TAAAATTACTAAAATACC
1 TAAAATTACCAAAATACC
*
82789987 TAAAATTACCAAAGTACC
1 TAAAATTACCAAAATACC
82790005 CCCGATTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.53, C:0.19, G:0.03, T:0.25
Consensus pattern (18 bp):
TAAAATTACCAAAATACC
Found at i:82790031 original size:27 final size:27
Alignment explanation
Indices: 82790001--82790211 Score: 226
Period size: 27 Copynumber: 7.8 Consensus size: 27
82789991 ATTACCAAAG
* *
82790001 TACCCCCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
82790028 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
82790055 TACCC-CTGATTTACATAATTATCATTT
1 TACCCTC-GATTTACAGAATTACCGTTT
* *
82790082 TACCCTCGACTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
82790109 TACCCTCAATTTACAGAATTCCCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * * **
82790136 TACCCTCGGTTTACAAAACTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
82790163 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
82790190 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
82790212 TAAAATACCC
Statistics
Matches: 156, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 154 0.99
28 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.08, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:82790134 original size:81 final size:81
Alignment explanation
Indices: 82790001--82790211 Score: 264
Period size: 81 Copynumber: 2.6 Consensus size: 81
82789991 ATTACCAAAG
* * *
82790001 TACCCCCGATTTATAGAATTACCGTTTTACCCCCGATTTACATAATTACCGTTTTACCC-CTGAT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTC-GAT
* *
82790065 TTACATAATTA-TCATTT
65 TTACAAAACTACT-ATTT
* * * * *
82790082 TACCCTCGACTTATAGAATTACCGTTTTACCCTCAATTTACAGAATTCCCGTTTTACCCTCGGTT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATT
82790147 TACAAAACTACTATTT
66 TACAAAACTACTATTT
* * **
82790163 TACCCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTAC
82790212 TAAAATACCC
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
81 109 0.98
82 2 0.02
ACGTcount: A:0.28, C:0.26, G:0.08, T:0.38
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATT
TACAAAACTACTATTT
Found at i:82790220 original size:27 final size:27
Alignment explanation
Indices: 82790136--82790412 Score: 134
Period size: 27 Copynumber: 10.2 Consensus size: 27
82790126 ATTCCCGTTT
* * ***
82790136 TACCCTCGGTTTACAAAACTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * ***
82790163 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
82790190 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
82790217 TACCCT-TAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* ** *
82790244 TACCCT-TAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* * *** **
82790271 TACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* **
82790298 TACCCTCAATTTGTAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
*
82790325 TACCC-CTGATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
*
82790352 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * * *
82790381 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
82790408 TACCC
1 TACCC
82790413 GTAGTTTGTA
Statistics
Matches: 206, Mismatches: 33, Indels: 22
0.79 0.13 0.08
Matches are distributed among these distances:
26 3 0.01
27 177 0.86
28 7 0.03
29 19 0.09
ACGTcount: A:0.38, C:0.20, G:0.08, T:0.34
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:82790237 original size:54 final size:53
Alignment explanation
Indices: 82790136--82790329 Score: 151
Period size: 54 Copynumber: 3.6 Consensus size: 53
82790126 ATTCCCGTTT
* * *** * * **
82790136 TACCCTCGGTTTACAAAACTACTATTTTACCCTTGATT-TACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGTTTGTA-A-AATTACCATAA
*
82790190 TACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAATACCCTT-GTTTGTAAAATTACCATAA
* ** * *
82790244 TACCCT-TAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTGAAATTACCGA-AA
1 TACCCTCGA-TTTACAAAATTACTAAAATACCCTT-GTTTGTAAAATTACC-ATAA
* **
82790298 TACCCTCAATTTGTAAAATTACTAAAATACCC
1 TACCCTCGATTTACAAAATTACTAAAATACCC
82790330 CTGATTTACA
Statistics
Matches: 117, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
53 1 0.01
54 108 0.92
55 6 0.05
56 2 0.02
ACGTcount: A:0.37, C:0.21, G:0.08, T:0.35
Consensus pattern (53 bp):
TACCCTCGATTTACAAAATTACTAAAATACCCTTGTTTGTAAAATTACCATAA
Found at i:82790248 original size:81 final size:80
Alignment explanation
Indices: 82790163--82790357 Score: 187
Period size: 81 Copynumber: 2.4 Consensus size: 80
82790153 ACTACTATTT
* *** * * *
82790163 TACCCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTAGTT
1 TACCCTTGATTTACA-AATTACCAAAATACCCTCGATTTACAAAATTACCAAAATACCCTCAATT
82790228 TGTAAAATTACCAAAA
65 TGTAAAATTACCAAAA
* * * *** *
82790244 TACCCTTAGTTTGTA-AAATTACCAAAATACCCTTGGTTTGTGAAATTACCGAAATACCCTCAAT
1 TACCCTT-GATT-TACAAATTACCAAAATACCCTCGATTTACAAAATTACCAAAATACCCTCAAT
*
82790308 TTGTAAAATTACTAAAA
64 TTGTAAAATTACCAAAA
*
82790325 TACCCCTGATTTACAAAGTTA-CAGAAATACCCT
1 TACCCTTGATTTACAAA-TTACCA-AAATACCCT
82790358 TGACTTTCTA
Statistics
Matches: 92, Mismatches: 17, Indels: 10
0.77 0.14 0.08
Matches are distributed among these distances:
79 2 0.02
80 8 0.09
81 76 0.83
82 4 0.04
83 2 0.02
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33
Consensus pattern (80 bp):
TACCCTTGATTTACAAATTACCAAAATACCCTCGATTTACAAAATTACCAAAATACCCTCAATTT
GTAAAATTACCAAAA
Found at i:82790352 original size:54 final size:53
Alignment explanation
Indices: 82790190--82790412 Score: 191
Period size: 54 Copynumber: 4.1 Consensus size: 53
82790180 ATTACTATTT
* ** *
82790190 TACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTA-AAATTACCA-AAA
1 TACCCTCAATTTGTAAAATTACTAAAATACCCTT-GGTT-TACAAATTA-CAGAAA
* * * ** *
82790244 TACCCTTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTCAATTTGTAAAATTACTAAAATACCCTTGGTTT-ACAAATTACAGAAA
* *
82790298 TACCCTCAATTTGTAAAATTACTAAAATACCCCTGATTTACAAAGTTACAGAAA
1 TACCCTCAATTTGTAAAATTACTAAAATACCCTTGGTTTACAAA-TTACAGAAA
* * * * *
82790352 TACCCTTGACTTTCTAAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAA
1 TACCC-TCAATTTGT-AAAATTACTA-AAATACCCTTGGTTTAC-AAATTACAGAAA
82790408 TACCC
1 TACCC
82790413 GTAGTTTGTA
Statistics
Matches: 137, Mismatches: 24, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
52 1 0.01
53 7 0.05
54 84 0.61
55 8 0.06
56 34 0.25
57 3 0.02
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (53 bp):
TACCCTCAATTTGTAAAATTACTAAAATACCCTTGGTTTACAAATTACAGAAA
Found at i:82790358 original size:81 final size:81
Alignment explanation
Indices: 82790205--82790359 Score: 199
Period size: 81 Copynumber: 1.9 Consensus size: 81
82790195 TCGATTTACA
* * * * *
82790205 AAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTACCAAA
82790270 ATACCCTTGGTTTGTG
66 ATACCCTTGGTTTGTG
* *
82790286 AAATTACCGAAATACCCTCAATTTGTAAAATTACTAAAATACCCCT-GATT-TACAAAGTTA-CA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTA-AAA-TTACCA
82790348 GAAATACCCTTG
64 -AAATACCCTTG
82790360 ACTTTCTAAA
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
79 2 0.03
80 8 0.12
81 54 0.84
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (81 bp):
AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTACCAAA
ATACCCTTGGTTTGTG
Found at i:82790419 original size:27 final size:27
Alignment explanation
Indices: 82790203--82790420 Score: 165
Period size: 27 Copynumber: 8.0 Consensus size: 27
82790193 CCTCGATTTA
82790203 CAAAATTACTAAAATACCCTTAGTTTG
1 CAAAATTACTAAAATACCCTTAGTTTG
* *
82790230 TAAAATTACCAAAATACCCTTAGTTTG
1 CAAAATTACTAAAATACCCTTAGTTTG
* * *
82790257 TAAAATTACCAAAATACCCTTGGTTTG
1 CAAAATTACTAAAATACCCTTAGTTTG
** ** * *
82790284 TGAAATTACCGAAATACCCTCAATTTG
1 CAAAATTACTAAAATACCCTTAGTTTG
* * *
82790311 TAAAATTACTAAAATACCCCT-GATTTA
1 CAAAATTACTAAAATACCCTTAG-TTTG
* *
82790338 CAAAGTTAC-AGAAATACCCTTGACTTT-
1 CAAAATTACTA-AAATACCCTT-AGTTTG
* * *
82790365 CTAAAAATTA-TAGAAATACCATTGGTTTA
1 C--AAAATTACTA-AAATACCCTTAGTTTG
* *
82790394 CAAAATTACTGAAATACCCGTAGTTTG
1 CAAAATTACTAAAATACCCTTAGTTTG
82790421 TAGATTTACC
Statistics
Matches: 154, Mismatches: 28, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
26 1 0.01
27 128 0.83
28 7 0.05
29 18 0.12
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
CAAAATTACTAAAATACCCTTAGTTTG
Found at i:82790537 original size:27 final size:27
Alignment explanation
Indices: 82790460--82790537 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
82790450 AAATGACTAA
* *
82790460 AATACCCCTAT-TAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* * *
82790487 AA-AGCTCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
82790514 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
82790538 GAATATGCCC
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
26 1 0.03
27 38 0.95
28 1 0.03
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.23
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:82791726 original size:25 final size:25
Alignment explanation
Indices: 82791697--82791744 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
82791687 TTATAATATG
* * *
82791697 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
82791722 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
82791745 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:82791795 original size:9 final size:9
Alignment explanation
Indices: 82791783--82791839 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
82791773 TTTGATAAAC
82791783 ATGATATGT
1 ATGATATGT
*
82791792 ATGATATGCAC
1 ATGATATG--T
*
82791803 ATGACATGT
1 ATGATATGT
*
82791812 ATGATATGCAC
1 ATGATATG--T
82791823 ATGATATGT
1 ATGATATGT
82791832 ATGATATG
1 ATGATATG
82791840 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:82791806 original size:20 final size:20
Alignment explanation
Indices: 82791781--82791851 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
82791771 ATTTTGATAA
82791781 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
82791801 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
82791821 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
82791841 ACATGAGATGT
1 ACATGATATGT
82791852 TCGTAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:82791828 original size:11 final size:11
Alignment explanation
Indices: 82791792--82791846 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
82791782 CATGATATGT
82791792 ATGATATGCAC
1 ATGATATGCAC
* *
82791803 ATGACATG--T
1 ATGATATGCAC
82791812 ATGATATGCAC
1 ATGATATGCAC
*
82791823 ATGATATG--T
1 ATGATATGCAC
82791832 ATGATATGCAC
1 ATGATATGCAC
82791843 ATGA
1 ATGA
82791847 GATGTTCGTA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:82792028 original size:24 final size:25
Alignment explanation
Indices: 82791898--82792041 Score: 240
Period size: 25 Copynumber: 5.9 Consensus size: 25
82791888 AGGAAGTGCA
82791898 AAAGGGCTTATGCCCCAGTTAT--T
1 AAAGGGCTTATGCCCCAGTTATGAT
82791921 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
82791946 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
*
82791971 GAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
*
82791996 AAAGGGCTTATGCCCCAGTTAT-AA
1 AAAGGGCTTATGCCCCAGTTATGAT
*
82792020 AAAGGGCTTTTGCCCCAGTTAT
1 AAAGGGCTTATGCCCCAGTTAT
82792042 TAAAAGAGGC
Statistics
Matches: 115, Mismatches: 4, Indels: 3
0.94 0.03 0.02
Matches are distributed among these distances:
23 22 0.19
24 22 0.19
25 71 0.62
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (25 bp):
AAAGGGCTTATGCCCCAGTTATGAT
Found at i:82795881 original size:13 final size:13
Alignment explanation
Indices: 82795863--82795891 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
82795853 TTTAGTTTAA
82795863 TTAGTTAATTAGT
1 TTAGTTAATTAGT
82795876 TTAGTTAATTAGT
1 TTAGTTAATTAGT
82795889 TTA
1 TTA
82795892 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:82807899 original size:46 final size:43
Alignment explanation
Indices: 82807845--82808021 Score: 140
Period size: 46 Copynumber: 3.9 Consensus size: 43
82807835 ATATTTGGGC
82807845 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GA
* * *** * *
82807889 ATGTCCGAACTGGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAGGC
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GGA
* *
82807938 ATCC-AAGCTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAAA
1 ATCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG--GA
* * *
82807983 CACCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82808022 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 19, Indels: 20
0.73 0.13 0.14
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 1 0.01
46 65 0.63
47 29 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.29
Consensus pattern (43 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGA
Found at i:82808001 original size:93 final size:93
Alignment explanation
Indices: 82807842--82808013 Score: 240
Period size: 93 Copynumber: 1.8 Consensus size: 93
82807832 AGGATATTTG
* ** *** *
82807842 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTGGTTGAG
1 GGCATCCGAACTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAAACACCCGAACTCGTTGAG
82807907 TTGAG-TCTGAGTTCGAGAGATGTAACTA
66 TTGAGTTC-GAGTTCGAGAGATGTAACTA
*
82807935 GGCATCC-AAGCTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAAACACCCGAGCTCGTTGA
1 GGCATCCGAA-CTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAAACACCCGAACTCGTTGA
82807999 GTTGAGTTCGAGTTC
65 GTTGAGTTCGAGTTC
82808014 ACTTATGGGC
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
92 2 0.03
93 65 0.94
94 2 0.03
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAAACACCCGAACTCGTTGAG
TTGAGTTCGAGTTCGAGAGATGTAACTA
Found at i:82826233 original size:438 final size:432
Alignment explanation
Indices: 82825424--82826292 Score: 1567
Period size: 438 Copynumber: 2.0 Consensus size: 432
82825414 CGTTAAAATC
* *
82825424 CAGAGAAAATTTAGGGTTCGGGAGTCGGTTACGCGCGAGGAAGGTATTAGTACCCTCGCGACGCC
1 CAGAGAAAATTTACGGTTCGGGAGTCGGTTACGCGCGAGGAAGGTATTAGCACCCTCGCGACGCC
82825489 CAAAATTGGTATCTTATAAACACGTGTTGTCTTGATTTTCAAAAATACGAGTTCAATATAAGATT
66 CAAAATTGGTATCTTATAAACACGTGTTGTCTTGATTTTCAAAAATACGAGTTCAATATAAGATT
82825554 AAACCGTGATCCGTTTGAAAAGACAAGAATTTTCAATCTTTTTGATTTTTTTTTCTTGAGAAGGA
131 AAACCGTGATCCGTTTGAAAAGACAAGAATTTTCAATCTTTTTGATTTTTTTTTCTTGAGAAGGA
* *
82825619 TATACCGTTTTAACACGAGTTGATTGATATTCACCCAGCGTAGCGATGAAATTGACAACTTGGTG
196 TATACCGTTTTAACACGAGTCGATTGATATTCACCCAGCATAGCGATGAAATTGACAACTTGGTG
*
82825684 TTAAACCGATATGTTGCCTTATGCCTCGAAATTAATCGGAAAACAGGAATAAGATTTTCGAAATA
261 GTAAACCGATATGTTGCCTTATGCCTCGAAATTAATCGGAAAACAGGAATAAGATTTTCGAAATA
* *
82825749 ATGCAAAGCAAATTGATATGAAATAGAAATAAATAAAAGTGCCAGGTATATATCAAAGCAAATAA
326 ATGCAAAGAAAATTAATATGAAATAGAAATAAATAAAAGTGCCAGGTATATATCAAAGCAAATAA
82825814 TAAATAGGATAATAATATTAAAAACAATAATCATGCATGCGT
391 TAAATAGGATAATAATATTAAAAACAATAATCATGCATGCGT
*
82825856 CAGAGAAAATTTACGGTTTGGGAGTCGGTTACGCGCGAGGAAGGTATTAGCACCCTCGCGACGCC
1 CAGAGAAAATTTACGGTTCGGGAGTCGGTTACGCGCGAGGAAGGTATTAGCACCCTCGCGACGCC
82825921 CAAAATTGGTATCTTATAAACACGTGTTGTCTTGATTTTCAAAAATACGAGTTCAATATAAGATT
66 CAAAATTGGTATCTTATAAACACGTGTTGTCTTGATTTTCAAAAATACGAGTTCAATATAAGATT
* *
82825986 AAATCGTGATCCGTTTGAAAAGACAAGAATTTTCAATCTTTTTGATTATTATTATTTTTTTTTGA
131 AAACCGTGATCCGTTTGAAAAGACAAGAATTTTCAATCTTTTTG---A-T-TT-TTTTTTCTTGA
*
82826051 GAAGGATATACCGTTTTAACACGAGTCGATTGATATTCACCCAGCATAGCGATGAAATTGACGAC
190 GAAGGATATACCGTTTTAACACGAGTCGATTGATATTCACCCAGCATAGCGATGAAATTGACAAC
*
82826116 TTGGTGGTAAGCCGATATGTTGCCTTATGCCTCGAAATTAATCGGAAAACAGGAATAAGATTTTC
255 TTGGTGGTAAACCGATATGTTGCCTTATGCCTCGAAATTAATCGGAAAACAGGAATAAGATTTTC
*
82826181 GAAATAATGCAAAGAAAATTAATATGAAATAGAAATAAATAAAAGTGCCAGGTATATATTAAAGC
320 GAAATAATGCAAAGAAAATTAATATGAAATAGAAATAAATAAAAGTGCCAGGTATATATCAAAGC
82826246 AAATAATAAATAGGATAATAATATTAAAAACAATAATCATGCATGCG
385 AAATAATAAATAGGATAATAATATTAAAAACAATAATCATGCATGCG
82826293 ATATTAAACG
Statistics
Matches: 418, Mismatches: 13, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
432 170 0.41
435 1 0.00
436 1 0.00
437 2 0.00
438 244 0.58
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (432 bp):
CAGAGAAAATTTACGGTTCGGGAGTCGGTTACGCGCGAGGAAGGTATTAGCACCCTCGCGACGCC
CAAAATTGGTATCTTATAAACACGTGTTGTCTTGATTTTCAAAAATACGAGTTCAATATAAGATT
AAACCGTGATCCGTTTGAAAAGACAAGAATTTTCAATCTTTTTGATTTTTTTTTCTTGAGAAGGA
TATACCGTTTTAACACGAGTCGATTGATATTCACCCAGCATAGCGATGAAATTGACAACTTGGTG
GTAAACCGATATGTTGCCTTATGCCTCGAAATTAATCGGAAAACAGGAATAAGATTTTCGAAATA
ATGCAAAGAAAATTAATATGAAATAGAAATAAATAAAAGTGCCAGGTATATATCAAAGCAAATAA
TAAATAGGATAATAATATTAAAAACAATAATCATGCATGCGT
Found at i:82826636 original size:21 final size:20
Alignment explanation
Indices: 82826612--82826650 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
82826602 TATTGAAACT
*
82826612 AAAACTAATACTAATAATAGC
1 AAAACTAATA-AAATAATAGC
82826633 AAAACTAATAAAATAATA
1 AAAACTAATAAAATAATA
82826651 TAGTACAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.64, C:0.10, G:0.03, T:0.23
Consensus pattern (20 bp):
AAAACTAATAAAATAATAGC
Found at i:82827727 original size:34 final size:34
Alignment explanation
Indices: 82827684--82827751 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
82827674 GGCGAAAGAA
*
82827684 AATCCAGCCAGGGGGGCTTGTCACCGGCCGATCG
1 AATCCAGCCAGGGGGGCTTGTCACCAGCCGATCG
82827718 AATCCAGCCAGGGGGGCTTGTCACCAGCCGATCG
1 AATCCAGCCAGGGGGGCTTGTCACCAGCCGATCG
82827752 TCGGTCGCCG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.19, C:0.32, G:0.34, T:0.15
Consensus pattern (34 bp):
AATCCAGCCAGGGGGGCTTGTCACCAGCCGATCG
Found at i:82827853 original size:22 final size:22
Alignment explanation
Indices: 82827810--82827854 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
82827800 AAAGGTAATT
* ** *
82827810 TTTTTATATTTTTTTTATTATA
1 TTTTTATATGTTTTAAAATATA
82827832 TTTTTATATGTTTTAAAATATA
1 TTTTTATATGTTTTAAAATATA
82827854 T
1 T
82827855 ATGTGAGAAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (22 bp):
TTTTTATATGTTTTAAAATATA
Found at i:82832712 original size:46 final size:48
Alignment explanation
Indices: 82832662--82832785 Score: 153
Period size: 46 Copynumber: 2.6 Consensus size: 48
82832652 CATGAGTGCC
* * * *
82832662 AGTGTAAGACATGTCTGGGACGTGCATCTGCATTGAGACA-A-GAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGACATACAAGCT
* * *
82832708 AGTGTAAGACATGTCTGGGATATGCATCAGCCTCGAGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGACATACAAGCT
*
82832756 AGTGTAAGACCTGTCTGGGACATGGCATCA
1 AGTGTAAGACATGTCTGGGACAT-GCATCA
82832786 ACACCGATAG
Statistics
Matches: 66, Mismatches: 9, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
46 34 0.52
47 1 0.02
48 25 0.38
49 6 0.09
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGACATACAAGCT
Found at i:82832813 original size:49 final size:49
Alignment explanation
Indices: 82832710--82832882 Score: 154
Period size: 49 Copynumber: 3.6 Consensus size: 49
82832700 CAAGAGCTAG
* * * * * * *
82832710 TGTAAGACATGTCTGGGATAT-GCATCAGCCTCGAGATAT-ACAAGCTAG
1 TGTAAGACCTGTCTGGGACATGGCATCAACCTCGATAGATGA-AAGCCAA
*
82832758 TGTAAGACCTGTCTGGGACATGGCATCAACAC-CGATAGATGAGAGCCAA
1 TGTAAGACCTGTCTGGGACATGGCATCAAC-CTCGATAGATGAAAGCCAA
* *** * * *
82832807 TGTAAGAGCTGTCTGGGACATGGCATTGGCCTCGATATATGAAAGTCAG
1 TGTAAGACCTGTCTGGGACATGGCATCAACCTCGATAGATGAAAGCCAA
* *
82832856 TGTAAGACCTGTTTGGGACACGGCATC
1 TGTAAGACCTGTCTGGGACATGGCATC
82832883 GACTTTAATA
Statistics
Matches: 101, Mismatches: 20, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
48 20 0.20
49 79 0.78
50 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (49 bp):
TGTAAGACCTGTCTGGGACATGGCATCAACCTCGATAGATGAAAGCCAA
Found at i:82845909 original size:38 final size:38
Alignment explanation
Indices: 82845858--82845935 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
82845848 CTTCAACGAA
*
82845858 TGGTCATGGTGGTTTGAGGAGTTTATACTCCTCATTCC
1 TGGTCATGGTGGTTTGAGGAGTTTATACTCCTAATTCC
*
82845896 TGGTCATGGTGGTTTGATGAGTTTATACTCCTAATTCC
1 TGGTCATGGTGGTTTGAGGAGTTTATACTCCTAATTCC
82845934 TG
1 TG
82845936 CTATCAATCT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.17, C:0.17, G:0.26, T:0.41
Consensus pattern (38 bp):
TGGTCATGGTGGTTTGAGGAGTTTATACTCCTAATTCC
Found at i:82852626 original size:46 final size:46
Alignment explanation
Indices: 82852564--82852653 Score: 153
Period size: 46 Copynumber: 2.0 Consensus size: 46
82852554 TACAATAGAG
*
82852564 AATATGGAATTAAAGAAATAAACCAGTCACCAAGTATTCAAAGAAT
1 AATATGGAATTAAAGAAATAAACCAATCACCAAGTATTCAAAGAAT
**
82852610 AATATGGAATTAAAGAAATAAATTAATCACCAAGTATTCAAAGA
1 AATATGGAATTAAAGAAATAAACCAATCACCAAGTATTCAAAGA
82852654 TTAAAATATT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.53, C:0.11, G:0.12, T:0.23
Consensus pattern (46 bp):
AATATGGAATTAAAGAAATAAACCAATCACCAAGTATTCAAAGAAT
Found at i:82861542 original size:20 final size:20
Alignment explanation
Indices: 82861497--82861544 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
82861487 ATTTAGATCA
* *
82861497 AGAAACGAACTAGTCTGTTT
1 AGAAACGGACTAGTCTGTTG
*
82861517 AGAAACGGACTAGTTTGTTG
1 AGAAACGGACTAGTCTGTTG
*
82861537 ATAAACGG
1 AGAAACGG
82861545 GAAAAAGGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.27
Consensus pattern (20 bp):
AGAAACGGACTAGTCTGTTG
Found at i:82877393 original size:101 final size:101
Alignment explanation
Indices: 82877210--82877393 Score: 282
Period size: 101 Copynumber: 1.8 Consensus size: 101
82877200 ACGTAAATGA
* * *
82877210 GGCATCGACATGTGAATTCCGATATGTGATGTGCAAGTAAGAGATGGCATCGATGTGTGATTCCT
1 GGCATCGACATGTGAACTCCGATATGTGATGTGCAAGTAAGAGATGGCATCGATATGTGATTCCA
*
82877275 ATATATGTGAGCGAGTAAGAGCGCATTTAATATTTT
66 ATATATGTGAGCAAGTAAGAGCGCATTTAATATTTT
*
82877311 GGCATCGATATGTG-ACTCCGATATGTGATGTGCAAGTAAG-GCCATGGCATCGATATGTGATTC
1 GGCATCGACATGTGAACTCCGATATGTGATGTGCAAGTAAGAG--ATGGCATCGATATGTGATTC
*
82877374 CAATATATGTGTGCAAGTAA
64 CAATATATGTGAGCAAGTAA
82877394 AACCCTGTCT
Statistics
Matches: 75, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
99 1 0.01
100 25 0.33
101 49 0.65
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (101 bp):
GGCATCGACATGTGAACTCCGATATGTGATGTGCAAGTAAGAGATGGCATCGATATGTGATTCCA
ATATATGTGAGCAAGTAAGAGCGCATTTAATATTTT
Found at i:82881511 original size:40 final size:40
Alignment explanation
Indices: 82881465--82881564 Score: 157
Period size: 40 Copynumber: 2.5 Consensus size: 40
82881455 TGATTGTATA
*
82881465 TATATATGGCACTTAGTGTGCAATTCGAG-ATAGCTTCGGC
1 TATATATGGCACTTAGTGTGCAATT-GAGAATAGCTTCAGC
* *
82881505 TTTATATGGCACTTAGTGTGCAATTTAGAATAGCTTCAGC
1 TATATATGGCACTTAGTGTGCAATTGAGAATAGCTTCAGC
82881545 TATATATGGCACTTAGTGTG
1 TATATATGGCACTTAGTGTG
82881565 TGAGACTGAG
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
39 2 0.04
40 53 0.96
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (40 bp):
TATATATGGCACTTAGTGTGCAATTGAGAATAGCTTCAGC
Found at i:82884970 original size:10 final size:10
Alignment explanation
Indices: 82884955--82885006 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
82884945 ATTATTAACA
82884955 TAATTAATTT
1 TAATTAATTT
*
82884965 TAATTAAACTTA
1 TAATT-AA-TTT
*
82884977 TAATAAATTT
1 TAATTAATTT
82884987 TAATTAATTT
1 TAATTAATTT
*
82884997 TGATT-ATTT
1 TAATTAATTT
82885006 T
1 T
82885007 CGACAGAATT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
9 5 0.14
10 20 0.57
11 4 0.11
12 6 0.17
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (10 bp):
TAATTAATTT
Found at i:82884971 original size:27 final size:28
Alignment explanation
Indices: 82884918--82884977 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
82884908 ATATATAAAT
* *
82884918 ATTA-TAAAATAATTATTTTGTACTTAA
1 ATTATTAAAATAATTAATTTGTAATTAA
*
82884945 ATTATTAACATAATTAATTT-TAATTAA
1 ATTATTAAAATAATTAATTTGTAATTAA
82884972 ACTTAT
1 A-TTAT
82884978 AATAAATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 11 0.39
28 17 0.61
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (28 bp):
ATTATTAAAATAATTAATTTGTAATTAA
Found at i:82887852 original size:43 final size:43
Alignment explanation
Indices: 82887768--82887925 Score: 126
Period size: 43 Copynumber: 3.7 Consensus size: 43
82887758 TCTAAGATAT
* * * *
82887768 CGTGTAAGACCGTGTCTAGGACA-CAGGCTTCGAT-TGAGATTTA
1 CGTGTAAGACCATGTCTGGGACATC-GGCATCGATAT-TGATTTA
*
82887811 CGTATAAGACCATGTCTGGGACATCGGCATCG-TATCTGATTT-
1 CGTGTAAGACCATGTCTGGGACATCGGCATCGATAT-TGATTTA
* * ** **
82887853 CGTGTAAGACCCTGTCTTGGACAGAGGCATCGATATTGAAGTA
1 CGTGTAAGACCATGTCTGGGACATCGGCATCGATATTGATTTA
* * * *
82887896 CATGTAAGACCACGTTTGGGACGTCGGCAT
1 CGTGTAAGACCATGTCTGGGACATCGGCAT
82887926 TGTACTTGAT
Statistics
Matches: 90, Mismatches: 21, Indels: 8
0.76 0.18 0.07
Matches are distributed among these distances:
42 32 0.36
43 57 0.63
44 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACATCGGCATCGATATTGATTTA
Found at i:82887875 original size:42 final size:40
Alignment explanation
Indices: 82887762--82887886 Score: 108
Period size: 42 Copynumber: 3.0 Consensus size: 40
82887752 CATTTGTCTA
* * *
82887762 AGATATCGTGTAAGACCGTGTCTAGGACACAGGCTTCGATT
1 AGATTTCGTGTAAGACCATGTCTAGGACAC-GGCATCGATT
* *
82887803 GAGATTTACGTATAAGACCATGTCTGGGACATCGGCATCGTATCT
1 -AGATTT-CGTGTAAGACCATGTCTAGGACA-CGGCATCG-AT-T
* * *
82887848 -GATTTCGTGTAAGACCCTGTCTTGGACAGAGGCATCGAT
1 AGATTTCGTGTAAGACCATGTCTAGGACA-CGGCATCGAT
82887887 ATTGAAGTAC
Statistics
Matches: 69, Mismatches: 10, Indels: 9
0.78 0.11 0.10
Matches are distributed among these distances:
41 2 0.03
42 32 0.46
43 31 0.45
44 3 0.04
45 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (40 bp):
AGATTTCGTGTAAGACCATGTCTAGGACACGGCATCGATT
Found at i:82887936 original size:85 final size:85
Alignment explanation
Indices: 82887767--82887925 Score: 196
Period size: 85 Copynumber: 1.9 Consensus size: 85
82887757 GTCTAAGATA
* * * * *
82887767 TCGTGTAAGACCGTGTCTAGGACACAGGCTTCGATTGAGATTTACGTATAAGACCATGTCTGGGA
1 TCGTGTAAGACCCTGTCTAGGACACAGGCATCGATTGAGATGTACATATAAGACCACGTCTGGGA
82887832 CATCGGCATCGTATCTGATT
66 CATCGGCATCGTATCTGATT
* * * *
82887852 TCGTGTAAGACCCTGTCTTGGACAGAGGCATCGATATTGA-A-GTACATGTAAGACCACGTTTGG
1 TCGTGTAAGACCCTGTCTAGGACACAGGCATCG--ATTGAGATGTACATATAAGACCACGTCTGG
*
82887915 GACGTCGGCAT
64 GACATCGGCAT
82887926 TGTACTTGAT
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
85 56 0.90
86 1 0.02
87 5 0.08
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (85 bp):
TCGTGTAAGACCCTGTCTAGGACACAGGCATCGATTGAGATGTACATATAAGACCACGTCTGGGA
CATCGGCATCGTATCTGATT
Found at i:82893302 original size:41 final size:41
Alignment explanation
Indices: 82893218--82893365 Score: 201
Period size: 41 Copynumber: 3.6 Consensus size: 41
82893208 GATTCGGATA
* *
82893218 TATATATGGCACTTAGTGTGCGA-TTCGAGATAGCTTCGGC
1 TATATATGGCACTTAGTGTGCGAGATCAAGATAGCTTCGGC
* *
82893258 TATATATGGCACTTAGTGTGCGAGACCAAGATAGCTTCGAC
1 TATATATGGCACTTAGTGTGCGAGATCAAGATAGCTTCGGC
* *
82893299 TATATAAGGCACTTAGTGTGCGAGATTATA-ATAGCTTCGGC
1 TATATATGGCACTTAGTGTGCGAGATCA-AGATAGCTTCGGC
*
82893340 TATGTATTGGCACTTAGTGTGCGAGA
1 TATATA-TGGCACTTAGTGTGCGAGA
82893366 ATTTGAGTAT
Statistics
Matches: 95, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
40 23 0.24
41 53 0.56
42 19 0.20
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (41 bp):
TATATATGGCACTTAGTGTGCGAGATCAAGATAGCTTCGGC
Found at i:82897182 original size:25 final size:25
Alignment explanation
Indices: 82897149--82897196 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
82897139 TGGAATGAAT
82897149 ATATACCATATGATAAATTAATTAA
1 ATATACCATATGATAAATTAATTAA
*
82897174 ATATGCCATATGATAAATTAATT
1 ATATACCATATGATAAATTAATT
82897197 CATAGGTAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.48, C:0.08, G:0.06, T:0.38
Consensus pattern (25 bp):
ATATACCATATGATAAATTAATTAA
Found at i:82898701 original size:27 final size:26
Alignment explanation
Indices: 82898657--82898708 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
82898647 CTCGCTGCAA
*
82898657 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
82898684 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
82898709 GCAGCCTCAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:82906942 original size:12 final size:12
Alignment explanation
Indices: 82906925--82906949 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
82906915 ACTTATAAGG
82906925 TTAAATATGTAA
1 TTAAATATGTAA
82906937 TTAAATATGTAA
1 TTAAATATGTAA
82906949 T
1 T
82906950 ACATTAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (12 bp):
TTAAATATGTAA
Found at i:82910458 original size:27 final size:27
Alignment explanation
Indices: 82910427--82910513 Score: 113
Period size: 27 Copynumber: 3.2 Consensus size: 27
82910417 CCCCAAAATA
*
82910427 GGTAAAATAATCATAATACCCCTGTAG
1 GGTAAAATGATCATAATACCCCTGTAG
* *
82910454 GGTAAAATGACCGTAA-AGCCCCTGTAG
1 GGTAAAATGATCATAATA-CCCCTGTAG
* *
82910481 GGTAAAATGATCATAATACCCCTTTAT
1 GGTAAAATGATCATAATACCCCTGTAG
82910508 GGTAAA
1 GGTAAA
82910514 CTGACGATTA
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
26 1 0.02
27 49 0.96
28 1 0.02
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.25
Consensus pattern (27 bp):
GGTAAAATGATCATAATACCCCTGTAG
Found at i:82921369 original size:28 final size:28
Alignment explanation
Indices: 82921336--82921390 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
82921326 ATTACACACT
* *
82921336 ACTGATACTGCATTGGGCTTAGGCCCAC
1 ACTGATACTGCATAGGGCTAAGGCCCAC
*
82921364 ACTGATACTGTATAGGGCTAAGGCCCA
1 ACTGATACTGCATAGGGCTAAGGCCCA
82921391 GATTATACTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.24
Consensus pattern (28 bp):
ACTGATACTGCATAGGGCTAAGGCCCAC
Found at i:82922714 original size:45 final size:44
Alignment explanation
Indices: 82922663--82922766 Score: 136
Period size: 45 Copynumber: 2.3 Consensus size: 44
82922653 CTAATTATGG
* ** *
82922663 GCACTTAATGTGTGAAATCAAGATAGCTTCGGATATATATATTTT
1 GCACTTAGTGTGCAAAATCAAGATAGCTTCGGATATATATA-TAT
* * *
82922708 GCACTTAGCGTGCAAAATCGAGATAGCTTCGGCTATATATATAT
1 GCACTTAGTGTGCAAAATCAAGATAGCTTCGGATATATATATAT
82922752 GCACTTAGTGTGCAA
1 GCACTTAGTGTGCAA
82922767 GATTGATACA
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 16 0.31
45 35 0.69
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33
Consensus pattern (44 bp):
GCACTTAGTGTGCAAAATCAAGATAGCTTCGGATATATATATAT
Found at i:82922782 original size:44 final size:45
Alignment explanation
Indices: 82922689--82922787 Score: 110
Period size: 44 Copynumber: 2.2 Consensus size: 45
82922679 ATCAAGATAG
* * * *
82922689 CTTCGGATATATATATTTTGCACTTAGCGTGCAAAATCGAGATAG
1 CTTCGGCTATATATATTATGCACTTAGCGTGCAAAATCGAGACAA
* * * *
82922734 CTTCGGCTATATATA-TATGCACTTAGTGTGCAAGATTGATACAA
1 CTTCGGCTATATATATTATGCACTTAGCGTGCAAAATCGAGACAA
*
82922778 CTTCGACTAT
1 CTTCGGCTAT
82922788 TTATTTGGCA
Statistics
Matches: 45, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
44 31 0.69
45 14 0.31
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.34
Consensus pattern (45 bp):
CTTCGGCTATATATATTATGCACTTAGCGTGCAAAATCGAGACAA
Found at i:82931605 original size:22 final size:22
Alignment explanation
Indices: 82931577--82931621 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
82931567 AAGATTTGGA
82931577 AAACCAAATGGGTTAGTTAGCT
1 AAACCAAATGGGTTAGTTAGCT
82931599 AAACCAAATGGGTTAGTTAGCT
1 AAACCAAATGGGTTAGTTAGCT
82931621 A
1 A
82931622 CGGAGCTTCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.38, C:0.13, G:0.22, T:0.27
Consensus pattern (22 bp):
AAACCAAATGGGTTAGTTAGCT
Found at i:82933480 original size:13 final size:13
Alignment explanation
Indices: 82933458--82933488 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
82933448 TTACTTTAGT
82933458 TTAG-TTAGTTAA
1 TTAGTTTAGTTAA
82933470 TTAGTTTAGTTAA
1 TTAGTTTAGTTAA
82933483 TTAGTT
1 TTAGTT
82933489 AATAAACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.29, C:0.00, G:0.16, T:0.55
Consensus pattern (13 bp):
TTAGTTTAGTTAA
Found at i:82935280 original size:32 final size:31
Alignment explanation
Indices: 82935244--82935304 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 31
82935234 GTTTGTTGTT
*
82935244 AGGGAAAGATACAGTGTTTGATTTCAACAAA
1 AGGGAAAGATACAGTGTTCGATTTCAACAAA
* *
82935275 NAGGGAAAGATGCAGTGTTCGATTTTAACA
1 -AGGGAAAGATACAGTGTTCGATTTCAACA
82935305 GAGCACGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.38, C:0.10, G:0.25, T:0.26
Consensus pattern (31 bp):
AGGGAAAGATACAGTGTTCGATTTCAACAAA
Found at i:82937004 original size:27 final size:28
Alignment explanation
Indices: 82936974--82937035 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 28
82936964 TCATACATCT
*
82936974 CATAAGGG-C-ATCATAGTCATTTTATCA
1 CATAAGGGACAAT-ATAGTCATTTTACCA
*
82937001 CAT-AGGGACAATATAGTCTTTTTACCA
1 CATAAGGGACAATATAGTCATTTTACCA
*
82937028 CAAAAGGG
1 CATAAGGG
82937036 GGTCTAAGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
26 4 0.14
27 19 0.66
28 6 0.21
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (28 bp):
CATAAGGGACAATATAGTCATTTTACCA
Found at i:82938128 original size:14 final size:15
Alignment explanation
Indices: 82938106--82938135 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
82938096 GAATATTAAA
82938106 ACAAGAATTAAGAAC
1 ACAAGAATTAAGAAC
82938121 ACAA-AATTAAGAAC
1 ACAAGAATTAAGAAC
82938135 A
1 A
82938136 AGTCAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.13, G:0.10, T:0.13
Consensus pattern (15 bp):
ACAAGAATTAAGAAC
Found at i:82945159 original size:18 final size:19
Alignment explanation
Indices: 82945124--82945159 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
82945114 ATAATTTTCA
*
82945124 TTTTTTTTCATGTTCAAGT
1 TTTTTTTTCATGTACAAGT
82945143 TTTTTTTTCAT-TACAAG
1 TTTTTTTTCATGTACAAG
82945160 ATTTCTTTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.19, C:0.11, G:0.08, T:0.61
Consensus pattern (19 bp):
TTTTTTTTCATGTACAAGT
Found at i:82945422 original size:40 final size:40
Alignment explanation
Indices: 82945376--82945486 Score: 159
Period size: 40 Copynumber: 2.8 Consensus size: 40
82945366 TTATAGTTGT
* *
82945376 GGCTAAGTCCCGAAGAGCATTCATGCTGGTGTTATATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTACATCCG
* *
82945416 GGCTAAGTCCCGAAGAGCATTCGTGCTGATGTTACATCTG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTACATCCG
* * *
82945456 GGCTAAGTCCTGAAGGGCATTCGTGCCGGTG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
82945487 ATGTGTAATC
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 63 1.00
ACGTcount: A:0.21, C:0.23, G:0.31, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTACATCCG
Found at i:82945689 original size:25 final size:25
Alignment explanation
Indices: 82945650--82945704 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
82945640 TGTGTAATAA
82945650 CGAATGAATGTAGGCACTATGTGTG
1 CGAATGAATGTAGGCACTATGTGTG
*
82945675 CGAATGAAT-TGAGGCACTGTGTGTG
1 CGAATGAATGT-AGGCACTATGTGTG
82945700 CGAAT
1 CGAAT
82945705 TCTTTAAACC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 1 0.04
25 27 0.96
ACGTcount: A:0.27, C:0.13, G:0.33, T:0.27
Consensus pattern (25 bp):
CGAATGAATGTAGGCACTATGTGTG
Found at i:82947147 original size:107 final size:107
Alignment explanation
Indices: 82946961--82947174 Score: 419
Period size: 107 Copynumber: 2.0 Consensus size: 107
82946951 CTGTTCTGTA
82946961 TTTAGAAAATCATTATAAATTGTACAAAAATGATTATAAGATAAAATTTATATGCTTAGACTCCT
1 TTTAGAAAATCATTATAAATTGTACAAAAATGATTATAAGATAAAATTTATATGCTTAGACTCCT
82947026 TAATGAGTCTAGTTTCAAATGAGATCAAATACAACACATTTT
66 TAATGAGTCTAGTTTCAAATGAGATCAAATACAACACATTTT
82947068 TTTAGAAAATCATTATAAATTGTACAAAAATGATTATAAGATAAAATTTATATGCTTAGACTCCT
1 TTTAGAAAATCATTATAAATTGTACAAAAATGATTATAAGATAAAATTTATATGCTTAGACTCCT
*
82947133 TAATGATTCTAGTTTCAAATGAGATCAAATACAACACATTTT
66 TAATGAGTCTAGTTTCAAATGAGATCAAATACAACACATTTT
82947175 GAATTCTGTA
Statistics
Matches: 106, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
107 106 1.00
ACGTcount: A:0.43, C:0.11, G:0.10, T:0.36
Consensus pattern (107 bp):
TTTAGAAAATCATTATAAATTGTACAAAAATGATTATAAGATAAAATTTATATGCTTAGACTCCT
TAATGAGTCTAGTTTCAAATGAGATCAAATACAACACATTTT
Found at i:82947942 original size:27 final size:27
Alignment explanation
Indices: 82947911--82948061 Score: 169
Period size: 27 Copynumber: 5.6 Consensus size: 27
82947901 TAAATTGTAC
*
82947911 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
82947938 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
82947964 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
82947992 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
82948020 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
82948047 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
82948062 GACTCGATAT
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
27 81 0.78
28 23 0.22
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:82948025 original size:82 final size:81
Alignment explanation
Indices: 82947912--82948061 Score: 230
Period size: 82 Copynumber: 1.8 Consensus size: 81
82947902 AAATTGTACA
*
82947912 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATAT-ATAGCACTAAGTG
82947976 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** * *
82947993 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATATAGCACTAAGTG
82948058 TGCG
65 TGCG
82948062 GACTCGATAT
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 17 0.27
82 45 0.73
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATATAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:82948052 original size:55 final size:53
Alignment explanation
Indices: 82947911--82948061 Score: 167
Period size: 55 Copynumber: 2.8 Consensus size: 53
82947901 TAAATTGTAC
* *
82947911 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAAATGAATATG
* ** ** *
82947964 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGA-AATGAATATG
* * * *
82948019 TAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 -AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCG
82948062 GACTCGATAT
Statistics
Matches: 81, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
53 1 0.01
54 38 0.47
55 41 0.51
56 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (53 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAAATGAATATG
Found at i:82953865 original size:200 final size:200
Alignment explanation
Indices: 82953517--82953919 Score: 788
Period size: 200 Copynumber: 2.0 Consensus size: 200
82953507 GTATTTACCT
82953517 TTGATTGAATTCGCTTACAACAATAGTTTTCAATCAAGTATTAAGATGGCACCTTACGAGGCTTT
1 TTGATTGAATTCGCTTACAACAATAGTTTTCAATCAAGTATTAAGATGGCACCTTACGAGGCTTT
82953582 GTACGGGCGTAAATGCCGCACACCATTGTTTTGGACTGAGCTTGGTGAAAGTAAAATTTTCGGAG
66 GTACGGGCGTAAATGCCGCACACCATTGTTTTGGACTGAGCTTGGTGAAAGTAAAATTTTCGGAG
82953647 TTGATTTGATTAAAGATGCCGAACAGAAAGTAAAGGGGTTATGGCTCGAACACGGGATCGAGGAA
131 TTGATTTGATTAAAGATGCCGAACAGAAAGTAAAGGGGTTATGGCTCGAACACGGGATCGAGGAA
82953712 GCTAC
196 GCTAC
82953717 TTGATTGAATTCGCTTACAACAATAGTTTTCAATCAAGTATTAAGATGGCACCTTACGAGGCTTT
1 TTGATTGAATTCGCTTACAACAATAGTTTTCAATCAAGTATTAAGATGGCACCTTACGAGGCTTT
82953782 GTACGGGCGTAAATGCCGCACACCATTGTTTTGGACTGAGCTTGGTGAAAGTAAAATTTTCGGAG
66 GTACGGGCGTAAATGCCGCACACCATTGTTTTGGACTGAGCTTGGTGAAAGTAAAATTTTCGGAG
* *
82953847 TTGATTTGATTGAAGATGCCGAACAGAAAGTAAAGGTGTTATGGCTCGAACACGGGATCGAGGAA
131 TTGATTTGATTAAAGATGCCGAACAGAAAGTAAAGGGGTTATGGCTCGAACACGGGATCGAGGAA
82953912 GCTAC
196 GCTAC
82953917 TTG
1 TTG
82953920 GGAAACCGAG
Statistics
Matches: 201, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
200 201 1.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.29
Consensus pattern (200 bp):
TTGATTGAATTCGCTTACAACAATAGTTTTCAATCAAGTATTAAGATGGCACCTTACGAGGCTTT
GTACGGGCGTAAATGCCGCACACCATTGTTTTGGACTGAGCTTGGTGAAAGTAAAATTTTCGGAG
TTGATTTGATTAAAGATGCCGAACAGAAAGTAAAGGGGTTATGGCTCGAACACGGGATCGAGGAA
GCTAC
Found at i:82956171 original size:27 final size:26
Alignment explanation
Indices: 82956140--82956317 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
82956130 TAAATTGTAC
82956140 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
82956167 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
82956193 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
82956221 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
82956249 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* * *
82956276 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
82956303 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
82956318 GACTCGATAT
Statistics
Matches: 126, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 25 0.20
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:82956256 original size:82 final size:81
Alignment explanation
Indices: 82956141--82956296 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
82956131 AAATTGTACA
* * *
82956141 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
82956205 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
82956222 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
82956287 TGCGAGTTGA
65 TGCGAATTGA
82956297 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:82956308 original size:82 final size:81
Alignment explanation
Indices: 82956137--82956317 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
82956127 GATTAAATTG
* * *
82956137 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
82956202 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
82956218 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
82956282 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
82956300 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
82956318 GACTCGATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:82961899 original size:4 final size:4
Alignment explanation
Indices: 82961890--82961923 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
82961880 AAGTTTTATT
82961890 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
82961924 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:82961931 original size:22 final size:22
Alignment explanation
Indices: 82961873--82961932 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
82961863 AAGTGGCCCA
*
82961873 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
82961897 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
82961918 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
82961933 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:82962913 original size:23 final size:22
Alignment explanation
Indices: 82962861--82962913 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
82962851 TCCACGTCCT
*
82962861 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
82962883 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
82962906 TTTCTTTT
1 TTTCTTTT
82962914 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:82967928 original size:15 final size:15
Alignment explanation
Indices: 82967908--82967962 Score: 69
Period size: 15 Copynumber: 3.8 Consensus size: 15
82967898 ACTCTCCTCA
*
82967908 TTCTTTTCTTTCTTT
1 TTCTTTTCTCTCTTT
*
82967923 TTCTTTTCACTCTTT
1 TTCTTTTCTCTCTTT
*
82967938 TTGTTTT-TCTCTTT
1 TTCTTTTCTCTCTTT
82967952 TTCTTTT-TCTC
1 TTCTTTTCTCTC
82967963 GATCAATAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
14 16 0.46
15 19 0.54
ACGTcount: A:0.02, C:0.22, G:0.02, T:0.75
Consensus pattern (15 bp):
TTCTTTTCTCTCTTT
Found at i:82969999 original size:11 final size:11
Alignment explanation
Indices: 82969980--82970013 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
82969970 TTTTAATCAC
*
82969980 TTCTCTTTTTT
1 TTCTTTTTTTT
82969991 TTC-TTTTTTT
1 TTCTTTTTTTT
82970001 TTCTTTTTTTT
1 TTCTTTTTTTT
82970012 TT
1 TT
82970014 AATTCAGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (11 bp):
TTCTTTTTTTT
Found at i:82970000 original size:10 final size:10
Alignment explanation
Indices: 82969980--82970012 Score: 57
Period size: 10 Copynumber: 3.2 Consensus size: 10
82969970 TTTTAATCAC
82969980 TTCTCTTTTTT
1 TTCT-TTTTTT
82969991 TTCTTTTTTT
1 TTCTTTTTTT
82970001 TTCTTTTTTT
1 TTCTTTTTTT
82970011 TT
1 TT
82970013 TAATTCAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 18 0.82
11 4 0.18
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (10 bp):
TTCTTTTTTT
Found at i:82970040 original size:17 final size:17
Alignment explanation
Indices: 82970006--82970040 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
82969996 TTTTTTTCTT
*
82970006 TTTTTTTTAATTCAGAA
1 TTTTTTTTAATACAGAA
*
82970023 TTTTTTTTAATACTGAA
1 TTTTTTTTAATACAGAA
82970040 T
1 T
82970041 ACACAAAGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.60
Consensus pattern (17 bp):
TTTTTTTTAATACAGAA
Found at i:82973643 original size:20 final size:20
Alignment explanation
Indices: 82973620--82973666 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
82973610 GGGTTAAGAT
*
82973620 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
82973640 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
82973660 TGAGCTG
1 TGAGCTG
82973667 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:82974116 original size:20 final size:20
Alignment explanation
Indices: 82974072--82974119 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
82974062 GAGCTTAAAA
82974072 TGAGCTGATTGAGCTAAGAG
1 TGAGCTGATTGAGCTAAGAG
*
82974092 GGAGCTCGA-TGAGCTAA-AG
1 TGAGCT-GATTGAGCTAAGAG
82974111 TTGAGCTGA
1 -TGAGCTGA
82974120 ATGAACTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
19 4 0.17
20 18 0.75
21 2 0.08
ACGTcount: A:0.29, C:0.12, G:0.35, T:0.23
Consensus pattern (20 bp):
TGAGCTGATTGAGCTAAGAG
Found at i:82979408 original size:12 final size:12
Alignment explanation
Indices: 82979391--82979448 Score: 73
Period size: 12 Copynumber: 4.8 Consensus size: 12
82979381 AATTTTTTTC
82979391 TTTTTTTTCAAT
1 TTTTTTTTCAAT
* *
82979403 TCTTTTTT-ATT
1 TTTTTTTTCAAT
82979414 TTTTTTTTCAATT
1 TTTTTTTTCAA-T
*
82979427 TTTTTTTTCAAA
1 TTTTTTTTCAAT
82979439 TTTTTTTTCA
1 TTTTTTTTCA
82979449 CGATTCTACT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
11 9 0.23
12 18 0.46
13 12 0.31
ACGTcount: A:0.16, C:0.09, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTTTTTCAAT
Found at i:82979410 original size:13 final size:13
Alignment explanation
Indices: 82979391--82979446 Score: 73
Period size: 13 Copynumber: 4.5 Consensus size: 13
82979381 AATTTTTTTC
82979391 TTTTTTTTCAA-T
1 TTTTTTTTCAATT
*
82979403 TCTTTTTT--ATT
1 TTTTTTTTCAATT
82979414 TTTTTTTTCAATT
1 TTTTTTTTCAATT
82979427 TTTTTTTTCAAATT
1 TTTTTTTTC-AATT
82979441 TTTTTT
1 TTTTTT
82979447 CACGATTCTA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
10 1 0.03
11 8 0.21
12 7 0.18
13 12 0.32
14 10 0.26
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTTTTTTCAATT
Found at i:82979417 original size:23 final size:22
Alignment explanation
Indices: 82979383--82979435 Score: 79
Period size: 23 Copynumber: 2.4 Consensus size: 22
82979373 ACCGTATAAA
82979383 TTTTTTTCTTTTTTTTCAATTC
1 TTTTTTTCTTTTTTTTCAATTC
* *
82979405 TTTTTTATTTTTTTTTTCAATTT
1 TTTTTT-TCTTTTTTTTCAATTC
82979428 TTTTTTTC
1 TTTTTTTC
82979436 AAATTTTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 7 0.26
23 20 0.74
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.81
Consensus pattern (22 bp):
TTTTTTTCTTTTTTTTCAATTC
Found at i:82979606 original size:19 final size:18
Alignment explanation
Indices: 82979584--82979621 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
82979574 ACGATGAAGT
*
82979584 TTCGTTCTTCTTGAGTCAA
1 TTCGTTCTACTTGA-TCAA
82979603 TTCGTTCTACTTGATCAA
1 TTCGTTCTACTTGATCAA
82979621 T
1 T
82979622 GAAGTCATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.18, C:0.21, G:0.13, T:0.47
Consensus pattern (18 bp):
TTCGTTCTACTTGATCAA
Found at i:82982217 original size:46 final size:45
Alignment explanation
Indices: 82982161--82982282 Score: 140
Period size: 47 Copynumber: 2.6 Consensus size: 45
82982151 ATCTCAGAGC
*
82982161 CGATGCATGTCCCAGACATGTCTTACACTGGC-TTTCGTCTCAATGT-
1 CGATGCATGTCCCAGACATGTCTTACACTGGCATTTC--AT-AATGTG
* * * *
82982207 CGATGTATGTCCCAGATATGACTTTCACTGGCATTTCATAATGTGG
1 CGATGCATGTCCCAGACATGTCTTACACTGGCATTTCATAATGT-G
82982253 CCGATGCATGTCCCAGACATGTCTTACACT
1 -CGATGCATGTCCCAGACATGTCTTACACT
82982283 AGCACACACA
Statistics
Matches: 63, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
44 5 0.08
45 1 0.02
46 28 0.44
47 29 0.46
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCATTTCATAATGTG
Found at i:82986944 original size:49 final size:49
Alignment explanation
Indices: 82986881--82987349 Score: 920
Period size: 49 Copynumber: 9.6 Consensus size: 49
82986871 TCAAGTCGAT
*
82986881 GCCATGTCCCAGACATGGTCTTACACTAGCTATCAAAATCGAGGCCAAC
1 GCCATGTCCCAGACATGGTCTTACACTAACTATCAAAATCGAGGCCAAC
*
82986930 GCCATGTCCCAGACATGGTCTTACACTAGCTATCAAAATCGAGGCCAAC
1 GCCATGTCCCAGACATGGTCTTACACTAACTATCAAAATCGAGGCCAAC
82986979 GCCATGTCCCAGACATGGTCTTACACTAACTATCAAAATCGAGGCCAAC
1 GCCATGTCCCAGACATGGTCTTACACTAACTATCAAAATCGAGGCCAAC
82987028 GCCATGTCCCAGACATGGTCTTACACTAACTATCAAAATCGAGGCCAAC
1 GCCATGTCCCAGACATGGTCTTACACTAACTATCAAAATCGAGGCCAAC
82987077 GCCATGTCCCAGACATGGTCTTACACTAACTATCAAAATCGAGGCCAAC
1 GCCATGTCCCAGACATGGTCTTACACTAACTATCAAAATCGAGGCCAAC
82987126 GCCATGTCCCAGACATGGTCTTACACTAACTATCAAAATCGAGGCCAAC
1 GCCATGTCCCAGACATGGTCTTACACTAACTATCAAAATCGAGGCCAAC
82987175 GCCATGTCCCAGACATGGTCTTACACTAACTATCAAAATCGAGGCCAAC
1 GCCATGTCCCAGACATGGTCTTACACTAACTATCAAAATCGAGGCCAAC
82987224 GCCATGTCCCAGACATGGTCTTACACTAACTATCAAAATCGAGGCCAAC
1 GCCATGTCCCAGACATGGTCTTACACTAACTATCAAAATCGAGGCCAAC
82987273 GCCATGTCCCAGACATGGTCTTACACTAACTATCAAAATCGAGGCCAAC
1 GCCATGTCCCAGACATGGTCTTACACTAACTATCAAAATCGAGGCCAAC
82987322 GCCATGTCCCAGACATGGTCTTACACTA
1 GCCATGTCCCAGACATGGTCTTACACTA
82987350 GCTCTCACAT
Statistics
Matches: 419, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 419 1.00
ACGTcount: A:0.32, C:0.31, G:0.17, T:0.21
Consensus pattern (49 bp):
GCCATGTCCCAGACATGGTCTTACACTAACTATCAAAATCGAGGCCAAC
Found at i:82994642 original size:32 final size:31
Alignment explanation
Indices: 82994606--82994687 Score: 74
Period size: 32 Copynumber: 2.5 Consensus size: 31
82994596 TTACTCTACC
*
82994606 TTTTTCTTTAATTAATTCTTTATTAATAATTA
1 TTTTTCTTTAATTAATTATTTATT-ATAATTA
* * * *
82994638 TTTTTAGTTCAATTATTTATTTATTGTAATTA
1 TTTTT-CTTTAATTAATTATTTATTATAATTA
* *
82994670 TTATTTTTTTAATCAATT
1 TT-TTTCTTTAATTAATT
82994688 GTTCTTTTAT
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
32 21 0.54
33 18 0.46
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.63
Consensus pattern (31 bp):
TTTTTCTTTAATTAATTATTTATTATAATTA
Found at i:82996288 original size:6 final size:6
Alignment explanation
Indices: 82996279--82996337 Score: 66
Period size: 6 Copynumber: 9.7 Consensus size: 6
82996269 ATTTATTTTC
* * *
82996279 TTTTAT TTTTCAT TTTTAT ATTTTA- TTCTAT TTTTAT TTTTCT GTTTAT
1 TTTTAT TTTT-AT TTTTAT -TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
82996328 TTTTAT TTTT
1 TTTTAT TTTT
82996338 TAGACTTCTT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
5 4 0.09
6 29 0.66
7 11 0.25
ACGTcount: A:0.15, C:0.05, G:0.02, T:0.78
Consensus pattern (6 bp):
TTTTAT
Found at i:82996334 original size:24 final size:25
Alignment explanation
Indices: 82996272--82996337 Score: 73
Period size: 24 Copynumber: 2.7 Consensus size: 25
82996262 TATTTTAATT
*
82996272 TATTTTCTTTTATTTTTCATTTTTA
1 TATTTTATTTTATTTTTCATTTTTA
* *
82996297 TATTTTATTCTATTTTT-ATTTTTC
1 TATTTTATTTTATTTTTCATTTTTA
*
82996321 T-GTTTATTTTTATTTTT
1 TATTTTA-TTTTATTTTT
82996338 TAGACTTCTT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
23 4 0.11
24 16 0.46
25 15 0.43
ACGTcount: A:0.15, C:0.06, G:0.02, T:0.77
Consensus pattern (25 bp):
TATTTTATTTTATTTTTCATTTTTA
Found at i:82998184 original size:30 final size:30
Alignment explanation
Indices: 82998149--82998207 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
82998139 AAGACCATTT
* * *
82998149 CCACACGGGCTGAGCACACGCCCGTGTGAG
1 CCACACGGGCTAACCACACGCCCATGTGAG
*
82998179 CCACACGGGCTAACCACATGCCCATGTGA
1 CCACACGGGCTAACCACACGCCCATGTGA
82998208 TAGCCCGTGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.24, C:0.37, G:0.27, T:0.12
Consensus pattern (30 bp):
CCACACGGGCTAACCACACGCCCATGTGAG
Found at i:83000933 original size:136 final size:137
Alignment explanation
Indices: 83000687--83000936 Score: 355
Period size: 136 Copynumber: 1.8 Consensus size: 137
83000677 CCTTCTAATT
* * * * *
83000687 AAATCATGACTTAATCACCTTCTAACTAATCTTATTAACATAAACTCTTTTTTTTTTTTGGAATG
1 AAATCATGACTTAATCACCTTCTAACTAATCATACTAACAT-AACTCATTATTTTTGTTGGAATG
* *
83000752 AGTATGTTTAAAGAAAAATTCACTTCAACATTTTAACTGAAATTATTAAATGTGTTATAACTTAG
65 AGTATATTTAAAGAAAAAATCACTTCAACATTTTAACTGAAATTATTAAATGTGTTATAACTTAG
83000817 GAGTAACA
130 GAGTAACA
83000825 AAATCATTG-CTTAATCACCTTCTAACTAATCATACTAACAT-ACGT-ATTATTTTTGTTGGAAT
1 AAATCA-TGACTTAATCACCTTCTAACTAATCATACTAACATAAC-TCATTATTTTTGTTGGAAT
* *
83000887 GAGTATATTTAATA-AAAAAATCACTTCACCATTTTAATTGAAATTATTAA
64 GAGTATATTTAA-AGAAAAAATCACTTCAACATTTTAACTGAAATTATTAA
83000937 CCATATTAAT
Statistics
Matches: 100, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
136 60 0.60
137 2 0.02
138 36 0.36
139 2 0.02
ACGTcount: A:0.38, C:0.14, G:0.08, T:0.40
Consensus pattern (137 bp):
AAATCATGACTTAATCACCTTCTAACTAATCATACTAACATAACTCATTATTTTTGTTGGAATGA
GTATATTTAAAGAAAAAATCACTTCAACATTTTAACTGAAATTATTAAATGTGTTATAACTTAGG
AGTAACA
Found at i:83001575 original size:18 final size:18
Alignment explanation
Indices: 83001535--83001577 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
83001525 GTTCAAAGTG
83001535 TAATTAATTTAAAATTTT
1 TAATTAATTTAAAATTTT
* *
83001553 CAATTAA-TTAAATTTATT
1 TAATTAATTTAAAATT-TT
83001571 TAATTAA
1 TAATTAA
83001578 AAACCTATTC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TAATTAATTTAAAATTTT
Found at i:83001774 original size:31 final size:29
Alignment explanation
Indices: 83001710--83001776 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 29
83001700 ACAATAACGT
* ** *
83001710 AAGTGACTAAAATGTAATATTTCAAACAT
1 AAGTGACAAAAATGTAATATGGCAAACAA
83001739 AAGTGACAAAAATGTAATATGAGGCAAACAA
1 AAGTGACAAAAATGTAATAT--GGCAAACAA
83001770 AAGTGAC
1 AAGTGAC
83001777 TATTTTTATA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 19 0.59
31 13 0.41
ACGTcount: A:0.51, C:0.10, G:0.16, T:0.22
Consensus pattern (29 bp):
AAGTGACAAAAATGTAATATGGCAAACAA
Found at i:83011163 original size:22 final size:23
Alignment explanation
Indices: 83011134--83011199 Score: 93
Period size: 22 Copynumber: 3.0 Consensus size: 23
83011124 TGCACTAATG
83011134 AACAGAGAGCACTGAA-GTGCTA
1 AACAGAGAGCACTGAATGTGCTA
* *
83011156 TACAGAGAACAC-GAATGTGCTA
1 AACAGAGAGCACTGAATGTGCTA
83011178 AACAGAGAGCACT-AATGTGCTA
1 AACAGAGAGCACTGAATGTGCTA
83011200 GTAATTGGAG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
21 3 0.08
22 35 0.92
ACGTcount: A:0.41, C:0.18, G:0.24, T:0.17
Consensus pattern (23 bp):
AACAGAGAGCACTGAATGTGCTA
Found at i:83013099 original size:28 final size:28
Alignment explanation
Indices: 83013064--83013119 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
83013054 AAACTTATAA
83013064 ACATACCATCTTATGATCATGAATAAGT
1 ACATACCATCTTATGATCATGAATAAGT
83013092 ACATACCATCTTATGATCATGAATAAGT
1 ACATACCATCTTATGATCATGAATAAGT
83013120 GTTATACACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (28 bp):
ACATACCATCTTATGATCATGAATAAGT
Found at i:83013831 original size:20 final size:20
Alignment explanation
Indices: 83013808--83013872 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
83013798 AGCATACATA
*
83013808 TGCTATTAGAAGCACCGTAG
1 TGCTATAAGAAGCACCGTAG
* *
83013828 TGCTACCAAGAA-CATCGTAG
1 TGCTA-TAAGAAGCACCGTAG
** * *
83013848 CACTATCAGGAGCACCGTAG
1 TGCTATAAGAAGCACCGTAG
83013868 TGCTA
1 TGCTA
83013873 ACATGAGCAC
Statistics
Matches: 32, Mismatches: 11, Indels: 4
0.68 0.23 0.09
Matches are distributed among these distances:
19 3 0.09
20 25 0.78
21 4 0.12
ACGTcount: A:0.31, C:0.25, G:0.23, T:0.22
Consensus pattern (20 bp):
TGCTATAAGAAGCACCGTAG
Found at i:83013880 original size:20 final size:20
Alignment explanation
Indices: 83013818--83013882 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
83013808 TGCTATTAGA
*
83013818 AGCACCGTAGTGCTACCAAG
1 AGCACCGTAGTGCTAACAAG
* * ** * *
83013838 AACATCGTAGCACTATCAGG
1 AGCACCGTAGTGCTAACAAG
*
83013858 AGCACCGTAGTGCTAACATG
1 AGCACCGTAGTGCTAACAAG
83013878 AGCAC
1 AGCAC
83013883 TTCTTCAAGA
Statistics
Matches: 33, Mismatches: 12, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.32, C:0.28, G:0.23, T:0.17
Consensus pattern (20 bp):
AGCACCGTAGTGCTAACAAG
Found at i:83022332 original size:20 final size:20
Alignment explanation
Indices: 83022263--83022334 Score: 63
Period size: 21 Copynumber: 3.4 Consensus size: 20
83022253 AATAATTATC
*
83022263 AAATACTATATAATGTAATT
1 AAATATTATATAATGTAATT
* * *
83022283 GAAATTAGTATAAATAATTTATAAT
1 -AAA-TA-T-TATATAATGTA-ATT
83022308 AAATATTATATAATGTAATT
1 AAATATTATATAATGTAATT
83022328 AAATATT
1 AAATATT
83022335 TAGTAAGTTA
Statistics
Matches: 40, Mismatches: 7, Indels: 9
0.71 0.12 0.16
Matches are distributed among these distances:
20 9 0.22
21 12 0.30
22 3 0.08
23 2 0.05
24 12 0.30
25 2 0.05
ACGTcount: A:0.51, C:0.01, G:0.06, T:0.42
Consensus pattern (20 bp):
AAATATTATATAATGTAATT
Found at i:83022476 original size:25 final size:26
Alignment explanation
Indices: 83022425--83022474 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
83022415 TTAATTATAT
*
83022425 TTTAAAAATAAAATATATGTCTAAAA
1 TTTAAAAATAAAATATATGTATAAAA
*
83022451 TTTAAAAAT-AATTAT-TGTATAAAA
1 TTTAAAAATAAAATATATGTATAAAA
83022475 ATAACTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 8 0.36
25 5 0.23
26 9 0.41
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (26 bp):
TTTAAAAATAAAATATATGTATAAAA
Found at i:83023648 original size:16 final size:16
Alignment explanation
Indices: 83023628--83023682 Score: 76
Period size: 16 Copynumber: 3.4 Consensus size: 16
83023618 GTTTGATTCA
83023628 CTGTAATGGAATAG-G
1 CTGTAATGGAATAGAG
**
83023643 ACTGTAATTAAATAGAG
1 -CTGTAATGGAATAGAG
83023660 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
83023676 CTGTAAT
1 CTGTAAT
83023683 CAGTAATTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
16 33 0.97
17 1 0.03
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.29
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:83023716 original size:46 final size:44
Alignment explanation
Indices: 83023664--83023756 Score: 136
Period size: 44 Copynumber: 2.1 Consensus size: 44
83023654 ATAGAGCTGT
83023664 AATGGAATAGAGCTGTAATCAGTAATT-TAAT-TGTTTGGTTGAATGG
1 AATGGAATAGAGCTGTAAT-AG-AATTCT--TGTGTTTGGTTGAATGG
83023710 AATGGAATAGAGCTGTAATAGAATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAGCTGTAATAGAATTCTTGTGTTTGGTTGAATGG
83023754 AAT
1 AAT
83023757 AGATGTTGTA
Statistics
Matches: 45, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
43 1 0.02
44 22 0.49
45 3 0.07
46 19 0.42
ACGTcount: A:0.32, C:0.04, G:0.27, T:0.37
Consensus pattern (44 bp):
AATGGAATAGAGCTGTAATAGAATTCTTGTGTTTGGTTGAATGG
Found at i:83031897 original size:18 final size:19
Alignment explanation
Indices: 83031874--83031918 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
83031864 TTAAATGGTC
*
83031874 TTTTTATTACTTTTA-AAT
1 TTTTTAATACTTTTATAAT
*
83031892 TTTTTAATATTTTTATAA-
1 TTTTTAATACTTTTATAAT
83031910 TTTTTAATA
1 TTTTTAATA
83031919 ATATTTTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 22 0.92
19 2 0.08
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (19 bp):
TTTTTAATACTTTTATAAT
Found at i:83031903 original size:10 final size:10
Alignment explanation
Indices: 83031884--83031934 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
83031874 TTTTTATTAC
83031884 TTTTAA-ATT
1 TTTTAATATT
83031893 TTTTAATATT
1 TTTTAATATT
83031903 TTTATAAT-TT
1 TTT-TAATATT
*
83031913 TTAATAATATT
1 TT-TTAATATT
*
83031924 TTTTAAAATT
1 TTTTAATATT
83031934 T
1 T
83031935 ATAAAATTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
9 6 0.17
10 21 0.60
11 8 0.23
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (10 bp):
TTTTAATATT
Found at i:83032366 original size:18 final size:18
Alignment explanation
Indices: 83032345--83032380 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
83032335 AAGAGAGAAA
83032345 ATAAAATTTTAAA-AATAT
1 ATAAAA-TTTAAATAATAT
83032363 ATAAAATTTAAATAATAT
1 ATAAAATTTAAATAATAT
83032381 GTACAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
ATAAAATTTAAATAATAT
Found at i:83033166 original size:22 final size:22
Alignment explanation
Indices: 83033140--83033181 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
83033130 TTGAGAATGA
83033140 ATTGATTCATTATTATTTTTGG
1 ATTGATTCATTATTATTTTTGG
* *
83033162 ATTGATTCATTTTTCTTTTT
1 ATTGATTCATTATTATTTTT
83033182 TTAATTTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.19, C:0.07, G:0.10, T:0.64
Consensus pattern (22 bp):
ATTGATTCATTATTATTTTTGG
Found at i:83033869 original size:17 final size:17
Alignment explanation
Indices: 83033847--83033880 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
83033837 TATTTAGTGG
83033847 TTATGGATTTTTTTTAA
1 TTATGGATTTTTTTTAA
83033864 TTATGGATTTTTTTTAA
1 TTATGGATTTTTTTTAA
83033881 GTATTTGTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.65
Consensus pattern (17 bp):
TTATGGATTTTTTTTAA
Found at i:83034019 original size:17 final size:17
Alignment explanation
Indices: 83033993--83034025 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
83033983 TTATTATAAT
*
83033993 TGTGTGTATATATTATG
1 TGTGTATATATATTATG
83034010 TGTGTATATATATTAT
1 TGTGTATATATATTAT
83034026 ATGCTTATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.18, T:0.55
Consensus pattern (17 bp):
TGTGTATATATATTATG
Found at i:83034762 original size:37 final size:38
Alignment explanation
Indices: 83034699--83034773 Score: 100
Period size: 37 Copynumber: 2.0 Consensus size: 38
83034689 CCTGTAAAGG
* *
83034699 CCCAATTTTGGCCCAACTTAAACCAACCCTAAC-CAAA
1 CCCAATTTTGGCCCAACCTAAACCAACCCAAACACAAA
*
83034736 CCCAA-TTTGGCCCAACCTAATCCCAACCCAAACACAAA
1 CCCAATTTTGGCCCAACCTAA-ACCAACCCAAACACAAA
83034774 AAATAAATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
36 14 0.42
37 15 0.45
38 4 0.12
ACGTcount: A:0.39, C:0.40, G:0.05, T:0.16
Consensus pattern (38 bp):
CCCAATTTTGGCCCAACCTAAACCAACCCAAACACAAA
Found at i:83034979 original size:23 final size:22
Alignment explanation
Indices: 83034953--83035001 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
83034943 GTTTTTGGTT
83034953 TTTTGGAGAAGGATTGTTCTTTG
1 TTTTGGAGAAGG-TTGTTCTTTG
* * *
83034976 TTTTGGAGGAGGTTTTTTTTTG
1 TTTTGGAGAAGGTTGTTCTTTG
83034998 TTTT
1 TTTT
83035002 TTGGAGGTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 12 0.52
23 11 0.48
ACGTcount: A:0.12, C:0.02, G:0.29, T:0.57
Consensus pattern (22 bp):
TTTTGGAGAAGGTTGTTCTTTG
Found at i:83035008 original size:24 final size:24
Alignment explanation
Indices: 83034944--83035021 Score: 81
Period size: 23 Copynumber: 3.3 Consensus size: 24
83034934 AGGGGGTGGG
* * *
83034944 TTTTTGGTTTTTTGGAGAAGGATTG
1 TTTTTTGTTTTTTGGAGGAGG-TTT
*
83034969 TTCTTTG--TTTTGGAGGAGGTTT
1 TTTTTTGTTTTTTGGAGGAGGTTT
*
83034991 TTTTTTGTTTTTTGGAGG-TGTTT
1 TTTTTTGTTTTTTGGAGGAGGTTT
83035014 TTTTTTGT
1 TTTTTTGT
83035022 AAAAAAGGTT
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
22 8 0.18
23 23 0.51
24 9 0.20
25 5 0.11
ACGTcount: A:0.09, C:0.01, G:0.28, T:0.62
Consensus pattern (24 bp):
TTTTTTGTTTTTTGGAGGAGGTTT
Found at i:83035364 original size:3 final size:3
Alignment explanation
Indices: 83035350--83035395 Score: 51
Period size: 3 Copynumber: 15.7 Consensus size: 3
83035340 GAGCTTTGTT
* *
83035350 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
83035394 TT
1 TT
83035396 TNNNNNNNNN
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
2 3 0.08
3 32 0.89
4 1 0.03
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:83037115 original size:3 final size:3
Alignment explanation
Indices: 83037101--83037186 Score: 60
Period size: 3 Copynumber: 29.3 Consensus size: 3
83037091 GAGCTTTGTT
* *
83037101 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
83037145 TT- TCTCA TGTA TATA TTA TT- TT- TTA -TA TTA TTA TTA -TA TTA T
1 TTA T-T-A T-TA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
83037187 ATATGCCCTC
Statistics
Matches: 68, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
2 12 0.18
3 48 0.71
4 6 0.09
5 2 0.03
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:83037143 original size:18 final size:18
Alignment explanation
Indices: 83037101--83037190 Score: 83
Period size: 18 Copynumber: 4.7 Consensus size: 18
83037091 GAGCTTTGTT
*
83037101 TTATTATTTTATTATTTTTA
1 TTATTA-TTTA-TATTATTA
*
83037121 CTATTATTTATATTATTA
1 TTATTATTTATATTATTA
*
83037139 TTATTATTTCTCATGTATATA
1 TTATTATTTAT-AT-TAT-TA
*
83037160 TTATTTTTTATATTATTA
1 TTATTATTTATATTATTA
83037178 TTA-TATTATATAT
1 TTATTATT-TATAT
83037191 GCCCTCTCCA
Statistics
Matches: 59, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
17 3 0.05
18 26 0.44
19 9 0.15
20 10 0.17
21 11 0.19
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (18 bp):
TTATTATTTATATTATTA
Found at i:83037428 original size:18 final size:19
Alignment explanation
Indices: 83037392--83037448 Score: 66
Period size: 17 Copynumber: 3.1 Consensus size: 19
83037382 ACTATTACTA
*
83037392 TTATATATTAGTGTATATTT
1 TTATATA-TAGTATATATTT
*
83037412 TTATGTATA-TATATA-TT
1 TTATATATAGTATATATTT
83037429 TTATATATAGTAT-TATTT
1 TTATATATAGTATATATTT
83037447 TT
1 TT
83037449 TATTACTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
17 12 0.38
18 12 0.38
19 2 0.06
20 6 0.19
ACGTcount: A:0.32, C:0.00, G:0.07, T:0.61
Consensus pattern (19 bp):
TTATATATAGTATATATTT
Found at i:83037547 original size:12 final size:12
Alignment explanation
Indices: 83037530--83037559 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
83037520 GTATTTCTAT
83037530 TATATACATATA
1 TATATACATATA
*
83037542 TATATACATTTA
1 TATATACATATA
83037554 TATATA
1 TATATA
83037560 GTATTATTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (12 bp):
TATATACATATA
Done.