Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 25 of 322
Found at i:7281213 original size:22 final size:23
Alignment explanation
Indices: 7281166--7281214 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
7281156 CTATTATAAT
* *
7281166 ATTTATTATTTATACATGTGTAA
1 ATTTATTATATATACATGTATAA
*
7281189 ATTTATTA-ATATACATGTATTA
1 ATTTATTATATATACATGTATAA
7281211 ATTT
1 ATTT
7281215 TTCACCTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 15 0.65
23 8 0.35
ACGTcount: A:0.37, C:0.04, G:0.06, T:0.53
Consensus pattern (23 bp):
ATTTATTATATATACATGTATAA
Found at i:7286732 original size:5 final size:5
Alignment explanation
Indices: 7286709--7286753 Score: 54
Period size: 5 Copynumber: 9.0 Consensus size: 5
7286699 AATAGTTAAA
* * * *
7286709 TTTAC TTTAT TTTCC TTTAT TTTAC TTTAC TTTAC TTTCC TTTAC
1 TTTAC TTTAC TTTAC TTTAC TTTAC TTTAC TTTAC TTTAC TTTAC
7286754 AATTATTAAT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.16, C:0.20, G:0.00, T:0.64
Consensus pattern (5 bp):
TTTAC
Found at i:7288819 original size:22 final size:22
Alignment explanation
Indices: 7288768--7288828 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
7288758 ATAAGTAAAT
* *
7288768 ACAAAAATAA-AGGAAAATATA
1 ACAAAAATAATAGAAAAATACA
* *
7288789 ATAACAATAATAGAAAAATACA
1 ACAAAAATAATAGAAAAATACA
* *
7288811 ACAATAATAATAGTAAAA
1 ACAAAAATAATAGAAAAA
7288829 GATATTATAA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.69, C:0.07, G:0.07, T:0.18
Consensus pattern (22 bp):
ACAAAAATAATAGAAAAATACA
Found at i:7288928 original size:3 final size:3
Alignment explanation
Indices: 7288920--7289033 Score: 56
Period size: 3 Copynumber: 37.7 Consensus size: 3
7288910 AAAGTAGTGC
* * *
7288920 TAA TAA TAA TAA TAA TAA TAA TAA T-C TAT TAA GTTA TAA TGAA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA T-AA TAA
* * * * * *
7288965 TAA TGA TAA TGA TGA T-A TAT TAGA TAA TAT TAG TAA -AA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA
* *
7289009 GTAA CAA TAA TAAA TTA TAA TAA TA
1 -TAA TAA TAA T-AA TAA TAA TAA TA
7289034 GTGATGAGAA
Statistics
Matches: 85, Mismatches: 17, Indels: 18
0.71 0.14 0.15
Matches are distributed among these distances:
2 7 0.08
3 66 0.78
4 12 0.14
ACGTcount: A:0.56, C:0.02, G:0.07, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:7289198 original size:16 final size:16
Alignment explanation
Indices: 7289169--7289206 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7289159 TATACGTATG
*
7289169 AAAA-ATAATGATAGT
1 AAAATATAATAATAGT
7289184 AAAATATAATAATAGT
1 AAAATATAATAATAGT
7289200 AATAATA
1 AA-AATA
7289207 ATAGTGGAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 4 0.20
16 12 0.60
17 4 0.20
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (16 bp):
AAAATATAATAATAGT
Found at i:7290399 original size:190 final size:190
Alignment explanation
Indices: 7289901--7290966 Score: 1632
Period size: 190 Copynumber: 5.5 Consensus size: 190
7289891 TATACTGATT
* * * * * *
7289901 CGATTTGCTCATTGTAAGCATAAGGATGCCAAACCATCTTGGATCCGCTTCAGC-ATAAACATCC
1 CGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAGCGA-AATCATCT
7289965 GAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATGCCAAACTTCGATTCGTTCT
65 GAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATGCCAAACTTCGATTCGTTCT
7290030 CTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTTCTCGTAATCACGTGAAAGCCAAATC
130 CTGACGATACAGAGACGACAAATCATCTT--A-----------G--ATCACGTGAAAGCCAAATC
* *
7290095 AACTATGTCTT
180 AGCTATGTCTC
* * *
7290106 CGATTTGTTCCTTGTAAACATAAGGATGCCAAACCATCTTGGATCTGCTTTAGCGAAATCATCTG
1 CGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAGCGAAATCATCTG
*
7290171 AAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATGCCAAACTTCGATTCGTTCTT
66 AAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATGCCAAACTTCGATTCGTTCTC
*
7290236 TGACGATACAGAGACGACAAATCATCTTAGATCACGTGACAGCCAAATCAGCTATGTCTC
131 TGACGATACAGAGACGACAAATCATCTTAGATCACGTGAAAGCCAAATCAGCTATGTCTC
7290296 CGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAGCGAAATCATCTG
1 CGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAGCGAAATCATCTG
7290361 AAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATGCCAAACTTCGATTCGTTCTC
66 AAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATGCCAAACTTCGATTCGTTCTC
*
7290426 TGACGATACAAAGACGACAAATCATCTTAGATCACGTGAAAGCCAAATCAGCTATGTCTC
131 TGACGATACAGAGACGACAAATCATCTTAGATCACGTGAAAGCCAAATCAGCTATGTCTC
7290486 CGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAGCGAAATCATCTG
1 CGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAGCGAAATCATCTG
7290551 AAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATGCCAAACTTCGATTCGTTCTC
66 AAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATGCCAAACTTCGATTCGTTCTC
*
7290616 TGACAATACAGAGACGACAAATCATCTGAGATTTGCTTCATCGTAATCACGTGAAAGCCAAATCA
131 TGACGATACAGAGACGAC-AA--ATC----A--T-CTT-A--G--ATCACGTGAAAGCCAAATCA
*
7290681 GCTATGTCTT
181 GCTATGTCTC
* *
7290691 CGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTTAGCGAAATCATCTG
1 CGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAGCGAAATCATCTG
*
7290756 AAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATGCCAAACTTCGATTCGTTCTT
66 AAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATGCCAAACTTCGATTCGTTCTC
7290821 TGACGATACAGAGACGACAAATCATCTTAGATCACGTGAAAGCCAAATCAGCTATGTCTC
131 TGACGATACAGAGACGACAAATCATCTTAGATCACGTGAAAGCCAAATCAGCTATGTCTC
* *
7290881 CGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCCGCTTCAGC-ATAAACATCT
1 CGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAGCGA-AATCATCT
*
7290945 GAAGGCGAGATCTGCTATGTGT
65 GAAGGTGAGATCTGCTATGTGT
7290967 GGCCTATTAC
Statistics
Matches: 814, Mismatches: 30, Indels: 49
0.91 0.03 0.05
Matches are distributed among these distances:
189 1 0.00
190 465 0.57
191 2 0.00
192 2 0.00
193 3 0.00
194 1 0.00
195 3 0.00
196 1 0.00
197 1 0.00
198 1 0.00
199 1 0.00
200 3 0.00
201 1 0.00
202 3 0.00
203 2 0.00
204 2 0.00
205 321 0.39
206 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.28
Consensus pattern (190 bp):
CGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAGCGAAATCATCTG
AAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATGCCAAACTTCGATTCGTTCTC
TGACGATACAGAGACGACAAATCATCTTAGATCACGTGAAAGCCAAATCAGCTATGTCTC
Found at i:7298848 original size:13 final size:15
Alignment explanation
Indices: 7298818--7298848 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
7298808 TTCCAGATTT
7298818 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
7298833 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
7298848 T
1 T
7298849 GGAAAGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.39, G:0.00, T:0.55
Consensus pattern (15 bp):
TCTTTTCTACCTCTC
Found at i:7308641 original size:134 final size:134
Alignment explanation
Indices: 7308398--7308786 Score: 464
Period size: 134 Copynumber: 2.9 Consensus size: 134
7308388 AAACAGACCA
* *
7308398 AAAGAGAATTGTTTGATGCACTTAG-GCAGGAACTTGAGTGAGTCTTGTTGATCTTTCATTGTTC
1 AAAGAGAATTGTTTGATGCACTTAGAGCAGGAACTTGAGTGAGTGTTGTTGATCCTTCATTGTT-
* * * **
7308462 TTAACAGCTAACGCTCAATATTTCTTAGATCATTTCATGTACTTCTTTCATGTTTTTACCCTCTG
65 TTAACAGCTAAAGCTCAATAATGCTTAGATCATTTCATGTACTTCTTTCATGTTTTTACCCTCCC
7308527 AGCCT
130 AGCCT
* * **
7308532 GAGGAGAATTGTTTGATGCACTTAGAG-AGGTGCTTGAGTGAGTGTTGTTGATCCTTCATTGTTT
1 AAAGAGAATTGTTTGATGCACTTAGAGCAGGAACTTGAGTGAGTGTTGTTGATCCTTCATTGTTT
* ** * * * *
7308596 TCAACAGCTAAAGCTCAAAAATGCTTAGATGGTTTCGTGTCCTTCTTTCATGTTCTTACCTTCCC
66 T-AACAGCTAAAGCTCAATAATGCTTAGATCATTTCATGTACTTCTTTCATGTTTTTACCCTCCC
7308661 AGCCT
130 AGCCT
* * * ** *
7308666 AAAGAAAATTGTTTGATGCACTTA-AGCAGGAACTTGAGTGACTGTTGCTGAT-CTTTGTTATTT
1 AAAGAGAATTGTTTGATGCACTTAGAGCAGGAACTTGAGTGAGTGTTGTTGATCCTTCATT-GTT
* * *
7308729 TTAACAGTTAAAGTTCAATAATGCTTTAGA-CATTTCATGTGCTTCTTTCATGTTTTTA
65 TTAACAGCTAAAGCTCAATAATGC-TTAGATCATTTCATGTACTTCTTTCATGTTTTTA
7308787 TGTCCTGGCC
Statistics
Matches: 214, Mismatches: 36, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
133 51 0.24
134 162 0.76
135 1 0.00
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.40
Consensus pattern (134 bp):
AAAGAGAATTGTTTGATGCACTTAGAGCAGGAACTTGAGTGAGTGTTGTTGATCCTTCATTGTTT
TAACAGCTAAAGCTCAATAATGCTTAGATCATTTCATGTACTTCTTTCATGTTTTTACCCTCCCA
GCCT
Found at i:7313565 original size:3 final size:3
Alignment explanation
Indices: 7313557--7313631 Score: 78
Period size: 3 Copynumber: 25.0 Consensus size: 3
7313547 CATTGATGGT
* * * *
7313557 TGC TGC TGC TGC TGC TGC TGT TCC TGC TGC TCC TCC TGC TGC TGC TGC
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
* * * *
7313605 TGC TCC GGC TCC TGC TCC TGC TGC TGC
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC
7313632 ATAAAGGCAA
Statistics
Matches: 58, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.00, C:0.40, G:0.27, T:0.33
Consensus pattern (3 bp):
TGC
Found at i:7317340 original size:52 final size:53
Alignment explanation
Indices: 7317284--7317385 Score: 161
Period size: 53 Copynumber: 1.9 Consensus size: 53
7317274 AATATACATT
*
7317284 TTAATTCTGACATAATAAAATTT-TTTACTCCACCCTTATCTAGATGGTCTTA
1 TTAATTCTGACATAATAAAATTTGTTGACTCCACCCTTATCTAGATGGTCTTA
* * *
7317336 TTAATTCTGATATAATAAAATTTGTTGACTCCATCCTTATTTAGATGGTC
1 TTAATTCTGACATAATAAAATTTGTTGACTCCACCCTTATCTAGATGGTC
7317386 ATTTTATGAC
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
52 22 0.49
53 23 0.51
ACGTcount: A:0.30, C:0.17, G:0.10, T:0.43
Consensus pattern (53 bp):
TTAATTCTGACATAATAAAATTTGTTGACTCCACCCTTATCTAGATGGTCTTA
Found at i:7334790 original size:11 final size:11
Alignment explanation
Indices: 7334774--7334798 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7334764 CTAAAATTAT
7334774 AAAATTTATAA
1 AAAATTTATAA
7334785 AAAATTTATAA
1 AAAATTTATAA
7334796 AAA
1 AAA
7334799 TTCAATTGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
AAAATTTATAA
Found at i:7350472 original size:54 final size:53
Alignment explanation
Indices: 7350405--7350511 Score: 205
Period size: 54 Copynumber: 2.0 Consensus size: 53
7350395 GAAAGGAAGG
7350405 TAATGGGGAGAATTGAAGTACCCCTCTTAATCGGGCCGAGCACGTACGAAGTA
1 TAATGGGGAGAATTGAAGTACCCCTCTTAATCGGGCCGAGCACGTACGAAGTA
7350458 NTAATGGGGAGAATTGAAGTACCCCTCTTAATCGGGCCGAGCACGTACGAAGTA
1 -TAATGGGGAGAATTGAAGTACCCCTCTTAATCGGGCCGAGCACGTACGAAGTA
7350512 GATTTCCTGG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.21
Consensus pattern (53 bp):
TAATGGGGAGAATTGAAGTACCCCTCTTAATCGGGCCGAGCACGTACGAAGTA
Found at i:7354460 original size:58 final size:58
Alignment explanation
Indices: 7354370--7354485 Score: 223
Period size: 58 Copynumber: 2.0 Consensus size: 58
7354360 CAGAAACTTA
7354370 TAAAGATTGGCATGAGAAGCTACTATTCGCCCTCTATGCTTATTGAACGTCTGTCAGG
1 TAAAGATTGGCATGAGAAGCTACTATTCGCCCTCTATGCTTATTGAACGTCTGTCAGG
*
7354428 TAAAGATTGGCATGAGAAGGTACTATTCGCCCTCTATGCTTATTGAACGTCTGTCAGG
1 TAAAGATTGGCATGAGAAGCTACTATTCGCCCTCTATGCTTATTGAACGTCTGTCAGG
7354486 ATTTCCACCG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (58 bp):
TAAAGATTGGCATGAGAAGCTACTATTCGCCCTCTATGCTTATTGAACGTCTGTCAGG
Found at i:7355913 original size:86 final size:86
Alignment explanation
Indices: 7355768--7355946 Score: 252
Period size: 86 Copynumber: 2.1 Consensus size: 86
7355758 ATCAGTGAAT
* ** *
7355768 TTGCAGATCTTATCTCCCTAAGCAGTAGGGAAACAAATCGAGGTTGATGGGCCTTAAACCCCTAA
1 TTGCAGATCTTATCTCCCTAAGCAGTAGGGAAACAAATCGAAGACGAAGGGCCTTAAACCCCTAA
* *
7355833 GCAGTAGGGTAACTGACCGAA
66 GCAGTAGGGTAACAGACCAAA
* * * *
7355854 TTGCAGATCTTATTTCCCTAAGCAGTAGTGG-AGCAGATCGAAGACGAAGGGTCTTAAACCCCTA
1 TTGCAGATCTTATCTCCCTAAGCAGTAG-GGAAACAAATCGAAGACGAAGGGCCTTAAACCCCTA
7355918 AGCAGTAGGGTAACAGACCAAA
65 AGCAGTAGGGTAACAGACCAAA
7355940 TTGCAGA
1 TTGCAGA
7355947 NNNNNNNNNN
Statistics
Matches: 82, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
86 80 0.98
87 2 0.02
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (86 bp):
TTGCAGATCTTATCTCCCTAAGCAGTAGGGAAACAAATCGAAGACGAAGGGCCTTAAACCCCTAA
GCAGTAGGGTAACAGACCAAA
Found at i:7366669 original size:7 final size:7
Alignment explanation
Indices: 7366651--7366687 Score: 56
Period size: 7 Copynumber: 5.1 Consensus size: 7
7366641 ATATCTATGT
7366651 ATATAAAA
1 ATAT-AAA
*
7366659 ATATGAA
1 ATATAAA
7366666 ATATAAA
1 ATATAAA
7366673 ATATAAA
1 ATATAAA
7366680 ATATAAA
1 ATATAAA
7366687 A
1 A
7366688 AGTATATATT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
7 23 0.85
8 4 0.15
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (7 bp):
ATATAAA
Found at i:7369911 original size:24 final size:24
Alignment explanation
Indices: 7369865--7369911 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
7369855 AAAGTCAAAT
**
7369865 ATATTATACTAATAAATGTTAAAA
1 ATATTATACTAATAAATACTAAAA
* *
7369889 ATATTATACTCATTAATACTAAA
1 ATATTATACTAATAAATACTAAA
7369912 TCTTCTAGAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.51, C:0.09, G:0.02, T:0.38
Consensus pattern (24 bp):
ATATTATACTAATAAATACTAAAA
Found at i:7371208 original size:24 final size:24
Alignment explanation
Indices: 7371162--7371208 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
7371152 AAAGTCAAAT
* **
7371162 ATATTATGCTAATAAATGTTAAAC
1 ATATTATACTAATAAATACTAAAC
*
7371186 ATATTATACTCATAAATACTAAA
1 ATATTATACTAATAAATACTAAA
7371209 TCTTCTAGAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.49, C:0.11, G:0.04, T:0.36
Consensus pattern (24 bp):
ATATTATACTAATAAATACTAAAC
Found at i:7378475 original size:15 final size:16
Alignment explanation
Indices: 7378448--7378478 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
7378438 ATTAAGACTT
7378448 TAAATTATAAATTTAA
1 TAAATTATAAATTTAA
7378464 TAAATT-TAAATTTAA
1 TAAATTATAAATTTAA
7378479 ATTGTTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
TAAATTATAAATTTAA
Found at i:7378818 original size:25 final size:25
Alignment explanation
Indices: 7378767--7378818 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
7378757 CTCTTAACGT
*
7378767 TTTCCCATCACAGCACAAATTATCC
1 TTTCCCATCACAGAACAAATTATCC
* *
7378792 TTTCCCCTCACATAACACAATTA-CC
1 TTTCCCATCACAGAACA-AATTATCC
7378817 TT
1 TT
7378819 CATTATTTCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 18 0.78
26 5 0.22
ACGTcount: A:0.31, C:0.37, G:0.02, T:0.31
Consensus pattern (25 bp):
TTTCCCATCACAGAACAAATTATCC
Found at i:7382517 original size:18 final size:18
Alignment explanation
Indices: 7382490--7382546 Score: 96
Period size: 18 Copynumber: 3.2 Consensus size: 18
7382480 TACGACCGTT
7382490 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
7382508 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
7382526 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
7382544 TAC
1 TAC
7382547 AGTAATTGGG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.32
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:7382632 original size:80 final size:80
Alignment explanation
Indices: 7382529--7382688 Score: 320
Period size: 80 Copynumber: 2.0 Consensus size: 80
7382519 TCACGTATAC
7382529 GGTACTGTTCACGTATACAGTAATTGGGATTGAGGAGAAAAATGGCAGCAGCATCGTCATCAGCA
1 GGTACTGTTCACGTATACAGTAATTGGGATTGAGGAGAAAAATGGCAGCAGCATCGTCATCAGCA
7382594 AGGACTACTGTGACA
66 AGGACTACTGTGACA
7382609 GGTACTGTTCACGTATACAGTAATTGGGATTGAGGAGAAAAATGGCAGCAGCATCGTCATCAGCA
1 GGTACTGTTCACGTATACAGTAATTGGGATTGAGGAGAAAAATGGCAGCAGCATCGTCATCAGCA
7382674 AGGACTACTGTGACA
66 AGGACTACTGTGACA
7382689 AATGCAAAAT
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 80 1.00
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.23
Consensus pattern (80 bp):
GGTACTGTTCACGTATACAGTAATTGGGATTGAGGAGAAAAATGGCAGCAGCATCGTCATCAGCA
AGGACTACTGTGACA
Found at i:7403408 original size:39 final size:39
Alignment explanation
Indices: 7403323--7403408 Score: 109
Period size: 39 Copynumber: 2.2 Consensus size: 39
7403313 TAGAGTGAAT
* * *
7403323 TCATCATCGTCATCATCTTCCTCCTCCTCCTCTTCATCA
1 TCATCATCGTCATCATCTTCCTCCTCCTCCACCTCATAA
* * *
7403362 TCATCATCGTCATCTTCTTCTTCTTCCTCCACCTCATAA
1 TCATCATCGTCATCATCTTCCTCCTCCTCCACCTCATAA
*
7403401 TCTTCATC
1 TCATCATC
7403409 TTCCTCCTCT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.16, C:0.41, G:0.02, T:0.41
Consensus pattern (39 bp):
TCATCATCGTCATCATCTTCCTCCTCCTCCACCTCATAA
Found at i:7407575 original size:53 final size:53
Alignment explanation
Indices: 7407419--7407584 Score: 221
Period size: 53 Copynumber: 3.1 Consensus size: 53
7407409 GACGAAAAAT
* **
7407419 ATGTGATAAGTGTG-C-CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCA
1 ATGTGATAA-TGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
7407471 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
* * *
7407524 ATGTGATAATGTGATTCCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGA
1 ATGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A
7407578 TATGTGA
1 -ATGTGA
7407585 ACCGTGTAAG
Statistics
Matches: 103, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
51 4 0.04
52 11 0.11
53 81 0.79
54 1 0.01
55 6 0.06
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
Found at i:7411060 original size:16 final size:18
Alignment explanation
Indices: 7411035--7411080 Score: 51
Period size: 16 Copynumber: 2.7 Consensus size: 18
7411025 GTGCAAGAGT
*
7411035 TTTTAATTTTACCT-T-A
1 TTTTATTTTTACCTATGA
*
7411051 TTTTATTTTTGCCTATGA
1 TTTTATTTTTACCTATGA
*
7411069 TTTTTTTTTTAC
1 TTTTATTTTTAC
7411081 TAAAGCTGCA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
16 12 0.50
17 1 0.04
18 11 0.46
ACGTcount: A:0.17, C:0.11, G:0.04, T:0.67
Consensus pattern (18 bp):
TTTTATTTTTACCTATGA
Found at i:7411721 original size:9 final size:8
Alignment explanation
Indices: 7411702--7411756 Score: 65
Period size: 9 Copynumber: 6.2 Consensus size: 8
7411692 TCGGGTATTT
7411702 TTCGGTAA
1 TTCGGTAA
7411710 TTCGGTTAA
1 TTCGG-TAA
7411719 TTCGGTTAA
1 TTCGG-TAA
7411728 TTCGGGTAA
1 TTC-GGTAA
7411737 TTCAGGTAA
1 TTC-GGTAA
7411746 TTCAGGTAA
1 TTC-GGTAA
7411755 TT
1 TT
7411757 TTTAACCAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
8 5 0.11
9 37 0.84
10 2 0.05
ACGTcount: A:0.25, C:0.11, G:0.24, T:0.40
Consensus pattern (8 bp):
TTCGGTAA
Found at i:7411730 original size:18 final size:17
Alignment explanation
Indices: 7411702--7411756 Score: 74
Period size: 18 Copynumber: 3.1 Consensus size: 17
7411692 TCGGGTATTT
*
7411702 TTCGGTAATTCGGTTAA
1 TTCGGTAATTCGGGTAA
7411719 TTCGGTTAATTCGGGTAA
1 TTCGG-TAATTCGGGTAA
*
7411737 TTCAGGTAATTCAGGTAA
1 TTC-GGTAATTCGGGTAA
7411755 TT
1 TT
7411757 TTTAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
17 5 0.15
18 27 0.79
19 2 0.06
ACGTcount: A:0.25, C:0.11, G:0.24, T:0.40
Consensus pattern (17 bp):
TTCGGTAATTCGGGTAA
Found at i:7416037 original size:42 final size:42
Alignment explanation
Indices: 7415941--7416037 Score: 99
Period size: 42 Copynumber: 2.3 Consensus size: 42
7415931 CAGCTTTATT
* * **
7415941 GAGCTTCTGTTTAACCCTTATGGGTTTTTGTTCAGCTCTTAC
1 GAGCTTCTGTTCAACCCTTATGGGATCCTGTTCAGCTCTTAC
* *
7415983 GAGCTT-TCGTTCAACCCTTATGGGATCCTGTTTAGCAT-TTAT
1 GAGCTTCT-GTTCAACCCTTATGGGATCCTGTTCAGC-TCTTAC
*
7416025 GTGCTTCTGTTCA
1 GAGCTTCTGTTCA
7416038 GCCTTCGGGC
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
41 1 0.02
42 42 0.93
43 2 0.04
ACGTcount: A:0.15, C:0.22, G:0.20, T:0.43
Consensus pattern (42 bp):
GAGCTTCTGTTCAACCCTTATGGGATCCTGTTCAGCTCTTAC
Found at i:7426437 original size:20 final size:21
Alignment explanation
Indices: 7426382--7426439 Score: 57
Period size: 20 Copynumber: 2.8 Consensus size: 21
7426372 CTAATAACCT
7426382 AAAAATAAATACATAAAAAAGTA
1 AAAAATAAATA-A-AAAAAAGTA
** *
7426405 AAAAA-AAGCAAAAAATAG-A
1 AAAAATAAATAAAAAAAAGTA
7426424 AAAAATAAATAAAAAA
1 AAAAATAAATAAAAAA
7426440 GAGGAAAGGT
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
19 6 0.21
20 14 0.48
21 1 0.03
22 3 0.10
23 5 0.17
ACGTcount: A:0.79, C:0.03, G:0.05, T:0.12
Consensus pattern (21 bp):
AAAAATAAATAAAAAAAAGTA
Found at i:7429183 original size:156 final size:155
Alignment explanation
Indices: 7428899--7429365 Score: 830
Period size: 156 Copynumber: 3.0 Consensus size: 155
7428889 TTCTCTTAGT
* *
7428899 AGCTTTCTGCTTTAAAAGAAAAGATAAACTTAGTTTGGGTTATCTGACAGATTAAAAGTACTCCA
1 AGCTTTCTGCTTTAAAAGAAAAGGTAAACTTAGTTTGGGTTATCTGACAGATTAAAAGTAGTCCA
*
7428964 AATGATACGGAAGAATCGGTCCCTGATAATTCTCTTTCTCGAACTGCTTCATGTGATGACAAGGT
66 AAGGATACGGAAGAATCGGTCCCTGATAATTCTCTTTCTCGAACTGCTTCATGTGAT-ACAAGGT
7429029 AGGTCAAATATTTCCAAGTAGCTTTC
130 AGGTCAAATATTTCCAAGTAGCTTTC
7429055 AGCTTTCTGCTTTAAAAGAAAAGGTAAACTTAGTTTGGGTTATCTGACAGATTAAAAGTAGTCCA
1 AGCTTTCTGCTTTAAAAGAAAAGGTAAACTTAGTTTGGGTTATCTGACAGATTAAAAGTAGTCCA
* *
7429120 AAGGATACAGAAGAATCGGTCCCTGACAATTCTCTTTCTCGAACTGCTTCATGTGATAACAAGGT
66 AAGGATACGGAAGAATCGGTCCCTGATAATTCTCTTTCTCGAACTGCTTCATGTGAT-ACAAGGT
7429185 AGGTCAAATATTTCCAAGTAGCTTTC
130 AGGTCAAATATTTCCAAGTAGCTTTC
* *
7429211 AGCTTTATGCTTTAAAAGAAAAGGTAAACTTAGATTGGGTTATCTGACAGATTAAAAGTAGTCCA
1 AGCTTTCTGCTTTAAAAGAAAAGGTAAACTTAGTTTGGGTTATCTGACAGATTAAAAGTAGTCCA
7429276 AAGGATACGGAAGAATCGGTCCCTGATAATTCTCTTTCTCGAACTGCTTCATGTGAT--AAGGTA
66 AAGGATACGGAAGAATCGGTCCCTGATAATTCTCTTTCTCGAACTGCTTCATGTGATACAAGGTA
*
7429339 GGTCAAATATTTCCAAGTAGTTTTC
131 GGTCAAATATTTCCAAGTAGCTTTC
7429364 AG
1 AG
7429366 TTATTGCTTC
Statistics
Matches: 300, Mismatches: 11, Indels: 3
0.96 0.04 0.01
Matches are distributed among these distances:
153 32 0.11
156 268 0.89
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.31
Consensus pattern (155 bp):
AGCTTTCTGCTTTAAAAGAAAAGGTAAACTTAGTTTGGGTTATCTGACAGATTAAAAGTAGTCCA
AAGGATACGGAAGAATCGGTCCCTGATAATTCTCTTTCTCGAACTGCTTCATGTGATACAAGGTA
GGTCAAATATTTCCAAGTAGCTTTC
Found at i:7441741 original size:2 final size:2
Alignment explanation
Indices: 7441734--7441759 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7441724 TGCTGCTTTA
7441734 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7441760 TTTTTGGGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7444012 original size:14 final size:14
Alignment explanation
Indices: 7443965--7444017 Score: 52
Period size: 14 Copynumber: 3.4 Consensus size: 14
7443955 TTTTGCTTGA
7443965 TCAAAATTAATTTT
1 TCAAAATTAATTTT
*
7443979 CTCAAATCACTAAGATTTT
1 -TCAAA--A-TTA-ATTTT
7443998 TCAAAATTAATTTT
1 TCAAAATTAATTTT
7444012 TCAAAA
1 TCAAAA
7444018 AAATTCTTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
14 11 0.34
15 7 0.22
16 1 0.03
17 1 0.03
18 7 0.22
19 5 0.16
ACGTcount: A:0.43, C:0.13, G:0.02, T:0.42
Consensus pattern (14 bp):
TCAAAATTAATTTT
Found at i:7447277 original size:29 final size:31
Alignment explanation
Indices: 7447230--7447288 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 31
7447220 TGACTTCTTA
*
7447230 TTTATATTTTTTCATATTT-G-CCCTAAACT
1 TTTATATTTTTACATATTTAGTCCCTAAACT
7447259 TTTATATTTTATACA-ATTTAGTCCCTAAAC
1 TTTATATTTT-TACATATTTAGTCCCTAAAC
7447289 CCAAAACATT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
29 14 0.54
30 4 0.15
31 8 0.31
ACGTcount: A:0.29, C:0.17, G:0.03, T:0.51
Consensus pattern (31 bp):
TTTATATTTTTACATATTTAGTCCCTAAACT
Found at i:7448725 original size:30 final size:30
Alignment explanation
Indices: 7448691--7448749 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
7448681 TTTCATATTG
7448691 CTTCAAGATTTAAAGAACTT-AAGATCGAGC
1 CTTCAAGATTTAAAGAA-TTCAAGATCGAGC
*
7448721 CTTCAAGATTTAAGGAATTCAAGATCGAG
1 CTTCAAGATTTAAAGAATTCAAGATCGAG
7448750 TTTTCTAAGG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 2 0.07
30 25 0.93
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (30 bp):
CTTCAAGATTTAAAGAATTCAAGATCGAGC
Found at i:7451173 original size:40 final size:40
Alignment explanation
Indices: 7451106--7451282 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 40
7451096 ACCCAAGTAT
*
7451106 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
7451145 CCTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
7451185 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* *
7451225 CTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
7451265 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
7451283 TTATCATCCG
Statistics
Matches: 119, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 12 0.10
40 104 0.87
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:7456603 original size:28 final size:29
Alignment explanation
Indices: 7456572--7456637 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 29
7456562 AATAATAGGT
7456572 ATAATAATAAATAAAATGATGTACG-AA-A
1 ATAATAATAAATAAAAT-ATGTACGCAAGA
* *
7456600 ATAATATTATATATAAAATATGTATGCAAGA
1 ATAATA--ATAAATAAAATATGTACGCAAGA
7456631 ATAATAA
1 ATAATAA
7456638 AATATATGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
28 6 0.19
29 7 0.22
30 12 0.38
31 7 0.22
ACGTcount: A:0.58, C:0.03, G:0.09, T:0.30
Consensus pattern (29 bp):
ATAATAATAAATAAAATATGTACGCAAGA
Found at i:7456643 original size:31 final size:30
Alignment explanation
Indices: 7456572--7456644 Score: 76
Period size: 31 Copynumber: 2.4 Consensus size: 30
7456562 AATAATAGGT
*
7456572 ATAATAATAAATAAAATGATGTACGAAAATA
1 ATAA-AATATATAAAATGATGTACGAAAATA
** *
7456603 ATATTATATATAAAAT-ATGTATGCAAGAATA
1 ATAAAATATATAAAATGATGTACG-AA-AATA
7456634 ATAAAATATAT
1 ATAAAATATAT
7456645 GTACTAATAT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
29 6 0.18
30 12 0.35
31 16 0.47
ACGTcount: A:0.58, C:0.03, G:0.08, T:0.32
Consensus pattern (30 bp):
ATAAAATATATAAAATGATGTACGAAAATA
Found at i:7457548 original size:50 final size:50
Alignment explanation
Indices: 7457481--7457580 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
7457471 AAGAGGGAAG
7457481 GAACTTACCGGTGTTCAGTTTTCCAACATCGTGGACGACCGAGGAAGCCA
1 GAACTTACCGGTGTTCAGTTTTCCAACATCGTGGACGACCGAGGAAGCCA
7457531 GAACTTACCGGTGTTCAGTTTTCCAACATCGTGGACGACCGAGGAAGCCA
1 GAACTTACCGGTGTTCAGTTTTCCAACATCGTGGACGACCGAGGAAGCCA
7457581 CCGCTGAAGA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.22
Consensus pattern (50 bp):
GAACTTACCGGTGTTCAGTTTTCCAACATCGTGGACGACCGAGGAAGCCA
Found at i:7457998 original size:39 final size:38
Alignment explanation
Indices: 7457954--7458102 Score: 174
Period size: 39 Copynumber: 3.9 Consensus size: 38
7457944 ATAAAGTATG
*
7457954 GTTTTAATTAATAATAAAACAAAATAGTATGAGGAAGTA
1 GTTTTAATTAACAATAAAACAAAATAGTATG-GGAAGTA
* *
7457993 GTTTTAATTAACAATAAAACAAAATTGTATGGGAAAATA
1 GTTTTAATTAACAATAAAACAAAATAGTATGGG-AAGTA
* *
7458032 GTTTTAATTAACAATAAAACAAAATAGCATGGGGAGT-
1 GTTTTAATTAACAATAAAACAAAATAGTATGGGAAGTA
* * * * *
7458069 GTTTTTGATTAATAATAAAATAAAGTAGCATGGG
1 G-TTTTAATTAACAATAAAACAAAATAGTATGGG
7458103 GGAGTGGAAT
Statistics
Matches: 97, Mismatches: 11, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
37 1 0.01
38 32 0.33
39 64 0.66
ACGTcount: A:0.48, C:0.05, G:0.17, T:0.31
Consensus pattern (38 bp):
GTTTTAATTAACAATAAAACAAAATAGTATGGGAAGTA
Found at i:7460799 original size:92 final size:91
Alignment explanation
Indices: 7460584--7460851 Score: 333
Period size: 90 Copynumber: 3.0 Consensus size: 91
7460574 GATTTTTGAC
* * * * * * * * *
7460584 AAACAAAATTTGGAATTTCCTCAGTGTGTCTTGATGCTCAACTCACCTATCGCAGTATGAATTGA
1 AAACAAAAATTGAAAATTCCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
**
7460649 TTTTTTTTG-AAAATAGAAATTTGAA
66 TTTTTTTTGAAAAATAGAAATTAAAA
* * * *
7460674 AAACAGAAATTGAAAATTCCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCACAATATGAGTTGA
1 AAACAAAAATTGAAAATTCCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
7460739 TTTTTTTTGAAAAATATAAATTAAAAA
66 TTTTTTTTGAAAAATAGAAATT-AAAA
* *
7460766 AAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGA
1 AAACAAAAATTGAAAATTCCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
**
7460831 -TTTTTTTGAAAAGCAGAAATT
66 TTTTTTTTGAAAAATAGAAATT
7460852 GAAATTATAC
Statistics
Matches: 151, Mismatches: 25, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
90 61 0.40
91 29 0.19
92 61 0.40
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (91 bp):
AAACAAAAATTGAAAATTCCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTTTTGAAAAATAGAAATTAAAA
Found at i:7460898 original size:77 final size:74
Alignment explanation
Indices: 7460765--7460999 Score: 316
Period size: 77 Copynumber: 3.1 Consensus size: 74
7460755 TAAATTAAAA
* *
7460765 AAAACAAAAATTGAAA-ATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTT
1 AAAACAGAAATTGAAATATACCTCAGCGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
7460829 GATTTTTTTG
65 GATTTTTTTG
* *
7460839 AAAAGCAGAAATTGAAATTATACCTTAGCGTGCCTTGAGGCTCAACTCACTTCTCGCAATATGAG
1 AAAA-CAGAAATTGAAA-TATACCTCAGCGTGCC-TGAGGCTCAACTCACCTCTCGCAATATGAG
7460904 TTGA--TTTTTG
63 TTGATTTTTTTG
* * *
7460914 ACAAACAAAAAATGAAAT-TACCTCAGCGTTTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 A-AAACAGAAATTGAAATATACCTCAGCG-TGCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
7460978 TGATTTTCTTG
64 TGATTTTTTTG
7460989 AAAACAGAAAT
1 AAAACAGAAAT
7461000 AAAAACATCA
Statistics
Matches: 141, Mismatches: 12, Indels: 16
0.83 0.07 0.09
Matches are distributed among these distances:
73 42 0.30
74 16 0.11
75 34 0.24
76 5 0.04
77 44 0.31
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (74 bp):
AAAACAGAAATTGAAATATACCTCAGCGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTTG
Found at i:7460967 original size:73 final size:72
Alignment explanation
Indices: 7460765--7460999 Score: 301
Period size: 73 Copynumber: 3.2 Consensus size: 72
7460755 TAAATTAAAA
* * *
7460765 AAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTG
1 AAAACAAAAATTGAAATTACCTCAGCGTTTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
7460830 ATTTTTTTG
66 A--TTTTTG
* * * *
7460839 AAAAGCAGAAATTGAAATTATACCTTAGCG-TGCCTTGAGGCTCAACTCACTTCTCGCAATATGA
1 AAAA-CAAAAATTGAAA-T-TACCTCAGCGTTTCC-TGAGGCTCAACTCACCTCTCGCAATATGA
7460903 GTTGATTTTTG
62 GTTGATTTTTG
*
7460914 ACAAACAAAAAATGAAATTACCTCAGCGTTTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 A-AAACAAAAATTGAAATTACCTCAGCGTTTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
7460979 GATTTTCTTG
65 GA-TTT-TTG
*
7460989 AAAACAGAAAT
1 AAAACAAAAAT
7461000 AAAAACATCA
Statistics
Matches: 139, Mismatches: 14, Indels: 16
0.82 0.08 0.09
Matches are distributed among these distances:
73 42 0.30
74 19 0.14
75 32 0.23
76 5 0.04
77 41 0.29
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (72 bp):
AAAACAAAAATTGAAATTACCTCAGCGTTTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTG
Found at i:7473790 original size:717 final size:717
Alignment explanation
Indices: 7472416--7473849 Score: 2868
Period size: 717 Copynumber: 2.0 Consensus size: 717
7472406 CATGGCTCTA
7472416 TTTAGGTGGTTCGTATGGTTTACTATATGTAGTTTTGGTTCTAGACAGGTACTTGAATTGTTCAT
1 TTTAGGTGGTTCGTATGGTTTACTATATGTAGTTTTGGTTCTAGACAGGTACTTGAATTGTTCAT
7472481 ACTATCGTCTACTAAGACTAGTACGAAGCCTCGGTCGTAGCCCATCACAGGCTCACGAGTTCAAT
66 ACTATCGTCTACTAAGACTAGTACGAAGCCTCGGTCGTAGCCCATCACAGGCTCACGAGTTCAAT
7472546 TCGAGGGGTCACATTTACTTATGCTTATGCGGAGGGACAAGTTAACTCACGAAAGCATAAGTCAT
131 TCGAGGGGTCACATTTACTTATGCTTATGCGGAGGGACAAGTTAACTCACGAAAGCATAAGTCAT
7472611 ATGTAACCCGAAAGTATTCACTAGCCTGTGCGAAGGGACGAGTTAACTCACGAAGGCATAGCGTT
196 ATGTAACCCGAAAGTATTCACTAGCCTGTGCGAAGGGACGAGTTAACTCACGAAGGCATAGCGTT
7472676 TACTTTCACTTAAACAGACAGAGCTCGGGTAGAGAGCTCATGTTATGCAAAATGCAAGTGCACGG
261 TACTTTCACTTAAACAGACAGAGCTCGGGTAGAGAGCTCATGTTATGCAAAATGCAAGTGCACGG
7472741 TGTGTGGGGAGAAACTCACAAACCTTTATGTTTTATTTAAAAACTAAACCAAAACTAAAACCATA
326 TGTGTGGGGAGAAACTCACAAACCTTTATGTTTTATTTAAAAACTAAACCAAAACTAAAACCATA
7472806 AAAATTTAAAGCTGAAAAACAACCAGATAAAACAAGTTAGAAGAATATATACGACACGATGCAAA
391 AAAATTTAAAGCTGAAAAACAACCAGATAAAACAAGTTAGAAGAATATATACGACACGATGCAAA
7472871 TGCATGACTTTTCAAAAACATAATTTTAGGACCACGACTAAATATTAATTTGAACAAGGAATTTT
456 TGCATGACTTTTCAAAAACATAATTTTAGGACCACGACTAAATATTAATTTGAACAAGGAATTTT
7472936 GAAAATTTTGACAACACGCGTTTAATTCGACTCGACTCTCAAAAATGGATCCCCAGCGGAGTCGC
521 GAAAATTTTGACAACACGCGTTTAATTCGACTCGACTCTCAAAAATGGATCCCCAGCGGAGTCGC
7473001 CAGCTGTAGCGACATATAAATTTTAGCTTGGTCGCTAATTGGGGTGTTTGATTGAAAATTTGAAA
586 CAGCTGTAGCGACATATAAATTTTAGCTTGGTCGCTAATTGGGGTGTTTGATTGAAAATTTGAAA
7473066 ACTGAAGTTTGATTTGAAATAAAGAGGGAGTCGCCACCGATCCTTTTTCCTAGGTGTGATCGGAC
651 ACTGAAGTTTGATTTGAAATAAAGAGGGAGTCGCCACCGATCCTTTTTCCTAGGTGTGATCGGAC
7473131 AC
716 AC
7473133 TTTAGGTGGTTCGTATGGTTTACTATATGTAGTTTTGGTTCTAGACAGGTACTTGAATTGTTCAT
1 TTTAGGTGGTTCGTATGGTTTACTATATGTAGTTTTGGTTCTAGACAGGTACTTGAATTGTTCAT
7473198 ACTATCGTCTACTAAGACTAGTACGAAGCCTCGGTCGTAGCCCATCACAGGCTCACGAGTTCAAT
66 ACTATCGTCTACTAAGACTAGTACGAAGCCTCGGTCGTAGCCCATCACAGGCTCACGAGTTCAAT
7473263 TCGAGGGGTCACATTTACTTATGCTTATGCGGAGGGACAAGTTAACTCACGAAAGCATAAGTCAT
131 TCGAGGGGTCACATTTACTTATGCTTATGCGGAGGGACAAGTTAACTCACGAAAGCATAAGTCAT
7473328 ATGTAACCCGAAAGTATTCACTAGCCTGTGCGAAGGGACGAGTTAACTCACGAAGGCATAGCGTT
196 ATGTAACCCGAAAGTATTCACTAGCCTGTGCGAAGGGACGAGTTAACTCACGAAGGCATAGCGTT
7473393 TACTTTCACTTAAACAGACAGAGCTCGGGTAGAGAGCTCATGTTATGCAAAATGCAAGTGCACGG
261 TACTTTCACTTAAACAGACAGAGCTCGGGTAGAGAGCTCATGTTATGCAAAATGCAAGTGCACGG
7473458 TGTGTGGGGAGAAACTCACAAACCTTTATGTTTTATTTAAAAACTAAACCAAAACTAAAACCATA
326 TGTGTGGGGAGAAACTCACAAACCTTTATGTTTTATTTAAAAACTAAACCAAAACTAAAACCATA
7473523 AAAATTTAAAGCTGAAAAACAACCAGATAAAACAAGTTAGAAGAATATATACGACACGATGCAAA
391 AAAATTTAAAGCTGAAAAACAACCAGATAAAACAAGTTAGAAGAATATATACGACACGATGCAAA
7473588 TGCATGACTTTTCAAAAACATAATTTTAGGACCACGACTAAATATTAATTTGAACAAGGAATTTT
456 TGCATGACTTTTCAAAAACATAATTTTAGGACCACGACTAAATATTAATTTGAACAAGGAATTTT
7473653 GAAAATTTTGACAACACGCGTTTAATTCGACTCGACTCTCAAAAATGGATCCCCAGCGGAGTCGC
521 GAAAATTTTGACAACACGCGTTTAATTCGACTCGACTCTCAAAAATGGATCCCCAGCGGAGTCGC
7473718 CAGCTGTAGCGACATATAAATTTTAGCTTGGTCGCTAATTGGGGTGTTTGATTGAAAATTTGAAA
586 CAGCTGTAGCGACATATAAATTTTAGCTTGGTCGCTAATTGGGGTGTTTGATTGAAAATTTGAAA
7473783 ACTGAAGTTTGATTTGAAATAAAGAGGGAGTCGCCACCGATCCTTTTTCCTAGGTGTGATCGGAC
651 ACTGAAGTTTGATTTGAAATAAAGAGGGAGTCGCCACCGATCCTTTTTCCTAGGTGTGATCGGAC
7473848 AC
716 AC
7473850 CTATTAGATT
Statistics
Matches: 717, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
717 717 1.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (717 bp):
TTTAGGTGGTTCGTATGGTTTACTATATGTAGTTTTGGTTCTAGACAGGTACTTGAATTGTTCAT
ACTATCGTCTACTAAGACTAGTACGAAGCCTCGGTCGTAGCCCATCACAGGCTCACGAGTTCAAT
TCGAGGGGTCACATTTACTTATGCTTATGCGGAGGGACAAGTTAACTCACGAAAGCATAAGTCAT
ATGTAACCCGAAAGTATTCACTAGCCTGTGCGAAGGGACGAGTTAACTCACGAAGGCATAGCGTT
TACTTTCACTTAAACAGACAGAGCTCGGGTAGAGAGCTCATGTTATGCAAAATGCAAGTGCACGG
TGTGTGGGGAGAAACTCACAAACCTTTATGTTTTATTTAAAAACTAAACCAAAACTAAAACCATA
AAAATTTAAAGCTGAAAAACAACCAGATAAAACAAGTTAGAAGAATATATACGACACGATGCAAA
TGCATGACTTTTCAAAAACATAATTTTAGGACCACGACTAAATATTAATTTGAACAAGGAATTTT
GAAAATTTTGACAACACGCGTTTAATTCGACTCGACTCTCAAAAATGGATCCCCAGCGGAGTCGC
CAGCTGTAGCGACATATAAATTTTAGCTTGGTCGCTAATTGGGGTGTTTGATTGAAAATTTGAAA
ACTGAAGTTTGATTTGAAATAAAGAGGGAGTCGCCACCGATCCTTTTTCCTAGGTGTGATCGGAC
AC
Found at i:7474768 original size:20 final size:20
Alignment explanation
Indices: 7474701--7474768 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 20
7474691 TGCATGCAAG
* *
7474701 AATAATAAAATATATGTACT
1 AATAATAAAATAAATGTAAT
* * *
7474721 AATATTAAAAATAAATATAGT
1 AATAAT-AAAATAAATGTAAT
**
7474742 AGGAATAAAATAAATGTAAT
1 AATAATAAAATAAATGTAAT
7474762 AATAATA
1 AATAATA
7474769 TATACACAAT
Statistics
Matches: 36, Mismatches: 11, Indels: 2
0.73 0.22 0.04
Matches are distributed among these distances:
20 22 0.61
21 14 0.39
ACGTcount: A:0.60, C:0.01, G:0.07, T:0.31
Consensus pattern (20 bp):
AATAATAAAATAAATGTAAT
Found at i:7482447 original size:9 final size:8
Alignment explanation
Indices: 7482432--7482456 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
7482422 CATTCATGCC
7482432 CTTTTTTT
1 CTTTTTTT
7482440 CTTTTTTT
1 CTTTTTTT
7482448 CTTTTTTT
1 CTTTTTTT
7482456 C
1 C
7482457 AAAAGGCCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (8 bp):
CTTTTTTT
Found at i:7484397 original size:34 final size:34
Alignment explanation
Indices: 7484353--7484417 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
7484343 CTCTCCATCG
*
7484353 AATCATGTAAAAAGATTTCGAATGGATTATGCTT
1 AATCAAGTAAAAAGATTTCGAATGGATTATGCTT
* *
7484387 AATCAAGTAAAAAGATTTTGAATTGATTATG
1 AATCAAGTAAAAAGATTTCGAATGGATTATG
7484418 TTGAGGAGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.42, C:0.06, G:0.17, T:0.35
Consensus pattern (34 bp):
AATCAAGTAAAAAGATTTCGAATGGATTATGCTT
Found at i:7493974 original size:22 final size:21
Alignment explanation
Indices: 7493930--7493971 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
7493920 TTCAAATTAC
7493930 ACAAAAAGTATTGATACCTTT
1 ACAAAAAGTATTGATACCTTT
*
7493951 ACAAAAAGTATTGATAGCTTT
1 ACAAAAAGTATTGATACCTTT
7493972 TACCAGGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.43, C:0.12, G:0.12, T:0.33
Consensus pattern (21 bp):
ACAAAAAGTATTGATACCTTT
Found at i:7494864 original size:21 final size:21
Alignment explanation
Indices: 7494835--7494879 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
7494825 GACATGGCCG
* *
7494835 TGTGGCTGCTCCACACGCCTA
1 TGTGACTGCTCCACACGCCCA
* *
7494856 TGTGACTGCTTCACATGCCCA
1 TGTGACTGCTCCACACGCCCA
7494877 TGT
1 TGT
7494880 ACGTAAGCCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.16, C:0.33, G:0.22, T:0.29
Consensus pattern (21 bp):
TGTGACTGCTCCACACGCCCA
Found at i:7494913 original size:126 final size:126
Alignment explanation
Indices: 7494688--7494918 Score: 349
Period size: 126 Copynumber: 1.8 Consensus size: 126
7494678 AGCTCAAACT
* * *
7494688 GTGTGGCTCTTGACATGGCCATGTGGCTACTTCACACGCTCATGTAATTGCTTCACATGCCCTTG
1 GTGTGGCTCTTGACATGGCCATGTGGCTACTCCACACGCTCATGTAACTGCTTCACATGCCCATG
* *
7494753 TACATAGACCATGTAACTCATTGTGCCTGTGTAATATAAATTCACGCGACCATGTCGCACC
66 TACATAGACCATGTAACTCACTGTGCCCGTGTAATATAAATTCACGCGACCATGTCGCACC
* * *
7494814 GTGTGGCTCTTGACATGGCCGTGTGGCTGCTCCACACGC-CTATGTGACTGCTTCACATGCCCAT
1 GTGTGGCTCTTGACATGGCCATGTGGCTACTCCACACGCTC-ATGTAACTGCTTCACATGCCCAT
*
7494878 GTACGTA-AGCCATGTAACTCACTGTGCCCGTGTAATATAAA
65 GTACATAGA-CCATGTAACTCACTGTGCCCGTGTAATATAAA
7494919 GTCATACGGC
Statistics
Matches: 94, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
125 2 0.02
126 92 0.98
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (126 bp):
GTGTGGCTCTTGACATGGCCATGTGGCTACTCCACACGCTCATGTAACTGCTTCACATGCCCATG
TACATAGACCATGTAACTCACTGTGCCCGTGTAATATAAATTCACGCGACCATGTCGCACC
Found at i:7498221 original size:18 final size:17
Alignment explanation
Indices: 7498200--7498390 Score: 124
Period size: 17 Copynumber: 10.9 Consensus size: 17
7498190 ACGAAAGTTT
7498200 TTTTTTAAAACACGAGAA
1 TTTTTTAAAACACGA-AA
*
7498218 TTTTTGAAAACACGAGAA
1 TTTTTTAAAACACGA-AA
*
7498236 -TTTGT-AAACACGAAA
1 TTTTTTAAAACACGAAA
*
7498251 -ATTTTAGAAACACGAAAA
1 TTTTTTA-AAACACG-AAA
* *
7498269 TTTTTAGAAAAAACGAAA
1 TTTTT-TAAAACACGAAA
*
7498287 TTTTCTTAAAACACGACATTT
1 TTTT-TTAAAACACGA-A--A
* *
7498308 TTTTTTGAAACACGGGAA
1 TTTTTTAAAACAC-GAAA
*
7498326 -TTTTTAAAACAGGGAAA
1 TTTTTTAAAACA-CGAAA
7498343 --TTTTAGAAACACGAAA
1 TTTTTTA-AAACACGAAA
* *
7498359 ATTTTTAAAACACGACA
1 TTTTTTAAAACACGAAA
*
7498376 TTTTTTGAAACACGA
1 TTTTTTAAAACACGA
7498391 TTTAAAAAAC
Statistics
Matches: 138, Mismatches: 21, Indels: 29
0.73 0.11 0.15
Matches are distributed among these distances:
15 5 0.04
16 17 0.12
17 50 0.36
18 40 0.29
19 11 0.08
20 10 0.07
21 5 0.04
ACGTcount: A:0.45, C:0.12, G:0.13, T:0.31
Consensus pattern (17 bp):
TTTTTTAAAACACGAAA
Found at i:7498631 original size:18 final size:18
Alignment explanation
Indices: 7498200--7498633 Score: 209
Period size: 18 Copynumber: 25.0 Consensus size: 18
7498190 ACGAAAGTTT
* *
7498200 TTTTTTAAAACACGAGAA
1 TTTTTGAAAACACGAAAA
*
7498218 TTTTTGAAAACACGAGAA
1 TTTTTGAAAACACGAAAA
*
7498236 --TTTGTAAACACGAAAA
1 TTTTTGAAAACACGAAAA
*
7498252 TTTTAG-AAACACGAAAA
1 TTTTTGAAAACACGAAAA
*
7498269 TTTTTAGAAAAAACG-AAA
1 TTTTT-GAAAACACGAAAA
* **
7498287 TTTTCTTAAAACACGACATTTT
1 TTTT-TGAAAACACGA-A--AA
**
7498309 TTTTTG-AAACACGGGAA
1 TTTTTGAAAACACGAAAA
* *
7498326 TTTTT-AAAACAGGGAAA
1 TTTTTGAAAACACGAAAA
*
7498343 TTTTAG-AAACACGAAAA
1 TTTTTGAAAACACGAAAA
* *
7498360 TTTTT-AAAACACGACAT
1 TTTTTGAAAACACGAAAA
7498377 TTTTTG-AAACACG---A
1 TTTTTGAAAACACGAAAA
*
7498391 --TTT-AAAAAAC-AAAA
1 TTTTTGAAAACACGAAAA
* ** *
7498405 --ATTG-AAATGCGAGAA
1 TTTTTGAAAACACGAAAA
**
7498420 TATTTTG-AAACACGAATT
1 T-TTTTGAAAACACGAAAA
** * *
7498438 TTTTTTTAAACGCGAGAA
1 TTTTTGAAAACACGAAAA
* *
7498456 TTTTTGAAAACATGGAAA
1 TTTTTGAAAACACGAAAA
* * *
7498474 -CTTTG-AAACACTG-GAG
1 TTTTTGAAAACAC-GAAAA
*
7498490 TTTTTGAAAACACGAGAA
1 TTTTTGAAAACACGAAAA
*
7498508 TTTGTG-AAACACGAAAA
1 TTTTTGAAAACACGAAAA
* *
7498525 TTTGTGAAAACACGTAAATT
1 TTTTTGAAAACACG-AAA-A
** *
7498545 TTTTTTTAAACATGAAAA
1 TTTTTGAAAACACGAAAA
* * *
7498563 TTTTTG-AAACGCCAGAA
1 TTTTTGAAAACACGAAAA
*
7498580 TTTTTGAAAGCAC-AAAGA
1 TTTTTGAAAACACGAAA-A
7498598 TTTTTGAAAACACGAAAA
1 TTTTTGAAAACACGAAAA
7498616 TTTTTGAAAACACGAAAA
1 TTTTTGAAAACACGAAAA
7498634 CACTAAATTT
Statistics
Matches: 314, Mismatches: 69, Indels: 66
0.70 0.15 0.15
Matches are distributed among these distances:
12 8 0.03
14 7 0.02
15 3 0.01
16 20 0.06
17 112 0.36
18 125 0.40
19 16 0.05
20 18 0.06
21 1 0.00
22 4 0.01
ACGTcount: A:0.44, C:0.11, G:0.14, T:0.31
Consensus pattern (18 bp):
TTTTTGAAAACACGAAAA
Found at i:7498712 original size:9 final size:9
Alignment explanation
Indices: 7498698--7498738 Score: 59
Period size: 9 Copynumber: 4.8 Consensus size: 9
7498688 TTCACGAGAA
7498698 TTTTTTTAT
1 TTTTTTTAT
7498707 TTTTTTTA-
1 TTTTTTTAT
7498715 -TTTTTTAT
1 TTTTTTTAT
*
7498723 TATTTTTAT
1 TTTTTTTAT
7498732 TTTTTTT
1 TTTTTTT
7498739 GAAACACGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
7 7 0.25
9 21 0.75
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:7498720 original size:16 final size:16
Alignment explanation
Indices: 7498699--7498736 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
7498689 TCACGAGAAT
*
7498699 TTTTTTATTTTTTTTA
1 TTTTTTATTATTTTTA
7498715 TTTTTTATTATTTTTA
1 TTTTTTATTATTTTTA
7498731 TTTTTT
1 TTTTTT
7498737 TTGAAACACG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (16 bp):
TTTTTTATTATTTTTA
Found at i:7498790 original size:16 final size:17
Alignment explanation
Indices: 7498767--7498814 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
7498757 TTGAAAACAC
7498767 GAAAACACGAATTTTTT
1 GAAAACACGAATTTTTT
*
7498784 G-AAACACGGAAATTTTT
1 GAAAACAC-GAATTTTTT
7498801 GAAAACACG-ATTTT
1 GAAAACACGAATTTT
7498815 GAAAGAAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 10 0.37
17 11 0.41
18 6 0.22
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.31
Consensus pattern (17 bp):
GAAAACACGAATTTTTT
Found at i:7498907 original size:18 final size:17
Alignment explanation
Indices: 7498867--7498906 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
7498857 TATTGTTATT
7498867 ATTTTTGAAACATGAGA
1 ATTTTTGAAACATGAGA
*
7498884 AATTTTGAAGACATGA-A
1 ATTTTTGAA-ACATGAGA
7498901 ATTTTT
1 ATTTTT
7498907 TTTTAAAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.40, C:0.05, G:0.15, T:0.40
Consensus pattern (17 bp):
ATTTTTGAAACATGAGA
Found at i:7499952 original size:30 final size:30
Alignment explanation
Indices: 7499912--7500013 Score: 125
Period size: 30 Copynumber: 3.4 Consensus size: 30
7499902 ATTTAGGATT
* *
7499912 AAAATGAAATTTAATGAAGGTTTAGGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
* * *
7499942 TAAGTGAAATTTAAAGAAAGTTTAAGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
*
7499972 AAAATGAAATTT-AGGAAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAG-AAAGTTTAGGGGTC
*
7500002 AAAATGCAATTT
1 AAAATGAAATTT
7500014 TTATTTTTAA
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
29 2 0.03
30 59 0.97
ACGTcount: A:0.43, C:0.04, G:0.24, T:0.29
Consensus pattern (30 bp):
AAAATGAAATTTAAAGAAAGTTTAGGGGTC
Found at i:7500460 original size:56 final size:55
Alignment explanation
Indices: 7500285--7500510 Score: 267
Period size: 55 Copynumber: 4.1 Consensus size: 55
7500275 CACGTGAGCC
* * *
7500285 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG-AAAACAGAATTTGCAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTG-AA
******* *
7500340 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTTTGAAAAATAGAAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAAAAATTG-AA
*
7500397 AAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTTTGAAAAACAAAAATT-AA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTT-G-ATTTTTGAAAAACAAAAATTGAA
* *
7500453 AAGGCTCAGCTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTGAA
7500508 AAG
1 AAG
7500511 TAGAAATTGA
Statistics
Matches: 143, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
54 18 0.13
55 38 0.27
56 37 0.26
57 38 0.27
58 12 0.08
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (55 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTGAA
Found at i:7500508 original size:14 final size:14
Alignment explanation
Indices: 7500489--7500523 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
7500479 GAGTTGATTT
7500489 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
**
7500503 TTGAAAAGTAGAAA
1 TTGAAAAACAGAAA
7500517 TTGAAAA
1 TTGAAAA
7500524 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.60, C:0.03, G:0.17, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:7500576 original size:87 final size:87
Alignment explanation
Indices: 7500454--7500682 Score: 338
Period size: 86 Copynumber: 2.7 Consensus size: 87
7500444 AAAAATTAAA
* * *
7500454 AGGCTCAGCTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAGTAGAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAGCAGAAATA
*
7500519 GAAAATACCTCAGCGTG-CCCTG
66 GAAAATACCTCAGCATGTCCC-G
* * * *
7500541 AGGCTCAACTCACCTCTTGCAATATGAATTGATTTTTG-AAAACATAAATTGAAAAACAGAAATA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAGCAGAAATA
7500605 GAAAATACCTCAGCATGTCCCG
66 GAAAATACCTCAGCATGTCCCG
* *
7500627 AGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTGAAACACAGAAATT-AAAAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAG
7500683 GCTCAACTCA
Statistics
Matches: 126, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
86 78 0.62
87 48 0.38
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.26
Consensus pattern (87 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAGCAGAAATA
GAAAATACCTCAGCATGTCCCG
Found at i:7500828 original size:130 final size:128
Alignment explanation
Indices: 7500595--7500969 Score: 501
Period size: 130 Copynumber: 2.9 Consensus size: 128
7500585 TAAATTGAAA
* *
7500595 AACAGAAATAGAAAATACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAGTATGAGTTGAT
1 AACAGAAAT-G-AAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
7500660 TTTTGAAACACAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA-A
64 TTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-AAAACA
7500724 T
128 T
* *
7500725 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
1 AACAGAAA-TGAAA-TACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* * * * *
7500790 TTTTGAAAAACAAAAATTAAAAGGCTTAGCTCACCTCTCGCAATATGAG-TCA-ATTTAAAACAT
64 TTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAACAT
** ** * *
7500853 AA-ACTAA--AAATACCTTGGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTT
1 AACAGAAATGAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
**
7500915 TTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGTGATATGAGTTGATTTT
66 TTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
7500970 CCTTGGAAAG
Statistics
Matches: 215, Mismatches: 25, Indels: 15
0.84 0.10 0.06
Matches are distributed among these distances:
123 88 0.41
124 5 0.02
125 2 0.01
127 7 0.03
128 7 0.03
129 5 0.02
130 100 0.47
131 1 0.00
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.27
Consensus pattern (128 bp):
AACAGAAATGAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAACAT
Found at i:7507021 original size:144 final size:144
Alignment explanation
Indices: 7506863--7507151 Score: 569
Period size: 144 Copynumber: 2.0 Consensus size: 144
7506853 ACAAATAAGT
7506863 AGACAAAGACAGAAAAAAACAGCAAGCAAAAGAAGTAAAAAAGGTAACTGAAAAGAAAAAAGAAG
1 AGACAAAGACAGAAAAAAACAGCAAGCAAAAGAAGTAAAAAAGGTAACTGAAAAGAAAAAAGAAG
*
7506928 TGAAGAAACAGAAAGATGAAAGGAAAAAGAGAGAAAAAGATAAAATAAAGAAAAAATAAAACCCA
66 AGAAGAAACAGAAAGATGAAAGGAAAAAGAGAGAAAAAGATAAAATAAAGAAAAAATAAAACCCA
7506993 TTTTTTGGTAGGCC
131 TTTTTTGGTAGGCC
7507007 AGACAAAGACAGAAAAAAACAGCAAGCAAAAGAAGTAAAAAAGGTAACTGAAAAGAAAAAAGAAG
1 AGACAAAGACAGAAAAAAACAGCAAGCAAAAGAAGTAAAAAAGGTAACTGAAAAGAAAAAAGAAG
7507072 AGAAGAAACAGAAAGATGAAAGGAAAAAGAGAGAAAAAGATAAAATAAAGAAAAAATAAAACCCA
66 AGAAGAAACAGAAAGATGAAAGGAAAAAGAGAGAAAAAGATAAAATAAAGAAAAAATAAAACCCA
7507137 TTTTTTGGTAGGCC
131 TTTTTTGGTAGGCC
7507151 A
1 A
7507152 CCAGCAGCCC
Statistics
Matches: 144, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
144 144 1.00
ACGTcount: A:0.62, C:0.08, G:0.20, T:0.10
Consensus pattern (144 bp):
AGACAAAGACAGAAAAAAACAGCAAGCAAAAGAAGTAAAAAAGGTAACTGAAAAGAAAAAAGAAG
AGAAGAAACAGAAAGATGAAAGGAAAAAGAGAGAAAAAGATAAAATAAAGAAAAAATAAAACCCA
TTTTTTGGTAGGCC
Found at i:7507087 original size:72 final size:71
Alignment explanation
Indices: 7506867--7507087 Score: 156
Period size: 72 Copynumber: 3.1 Consensus size: 71
7506857 ATAAGTAGAC
7506867 AAAGACAGAAAAAAACAGCAAGCAAAAGAAGTAAAAAAGGTAACTGAAAAGAAAAAAGAAGTGAA
1 AAAGACAGAAAAAAACAGCAAGCAAAAGAAGTAAAAAAGGTAACTGAAAAGAAAAAAGAAG-GAA
7506932 GAAACAG
65 GAAACAG
* * * *
7506939 AAAGA-TGAAAGGAAAA-AG-AGAGAAAAAG-A-TAAAATAAAG-AA---AAAATAAAACCCATT
1 AAAGACAGAAA--AAAACAGCA-AGCAAAAGAAGTAAAA-AAGGTAACTGAAAAGAAAA---A--
**** * **
7506995 TTTTGGTAG-GCCAG
57 AGAAGGAAGAAACAG
7507009 ACAAAGACAGAAAAAAACAGCAAGCAAAAGAAGTAAAAAAGGTAACTGAAAAGAAAAAAGAAGAG
1 --AAAGACAGAAAAAAACAGCAAGCAAAAGAAGTAAAAAAGGTAACTGAAAAGAAAAAAGAAG-G
7507074 AAGAAACAG
63 AAGAAACAG
7507083 AAAGA
1 AAAGA
7507088 TGAAAGGAAA
Statistics
Matches: 105, Mismatches: 22, Indels: 44
0.61 0.13 0.26
Matches are distributed among these distances:
67 8 0.08
70 11 0.10
71 16 0.15
72 35 0.33
73 16 0.15
74 11 0.10
77 8 0.08
ACGTcount: A:0.63, C:0.08, G:0.20, T:0.08
Consensus pattern (71 bp):
AAAGACAGAAAAAAACAGCAAGCAAAAGAAGTAAAAAAGGTAACTGAAAAGAAAAAAGAAGGAAG
AAACAG
Found at i:7507748 original size:17 final size:17
Alignment explanation
Indices: 7507728--7507767 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
7507718 GTTTTTAAAA
7507728 AAAAATT-TCATGTCTTC
1 AAAAATTCTCATGT-TTC
*
7507745 AAAATTTCTCATGTTTC
1 AAAAATTCTCATGTTTC
7507762 AAAAAT
1 AAAAAT
7507768 AATAACAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.40, C:0.15, G:0.05, T:0.40
Consensus pattern (17 bp):
AAAAATTCTCATGTTTC
Found at i:7507867 original size:17 final size:17
Alignment explanation
Indices: 7507820--7507868 Score: 66
Period size: 17 Copynumber: 2.9 Consensus size: 17
7507810 TGTTTCTTTC
7507820 AAAA-TCGTGTTTTCAA
1 AAAATTCGTGTTTTCAA
*
7507836 AAATTTCCGTG-TTTCAA
1 AAAATT-CGTGTTTTCAA
7507853 AAAATTCGTGTTTTCA
1 AAAATTCGTGTTTTCA
7507869 TGTTTTCAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
16 7 0.25
17 17 0.61
18 4 0.14
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.41
Consensus pattern (17 bp):
AAAATTCGTGTTTTCAA
Found at i:7507914 original size:15 final size:15
Alignment explanation
Indices: 7507895--7507934 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 15
7507885 CTCGTGTTTC
7507895 AAAAAAAAATAA-AA
1 AAAAAAAAATAATAA
7507909 ATAAAAAAAATAATAA
1 A-AAAAAAAATAATAA
7507925 AAAATAAAAA
1 AAAA-AAAAA
7507935 AATTCTCGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 1 0.04
15 14 0.61
16 8 0.35
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (15 bp):
AAAAAAAAATAATAA
Found at i:7507923 original size:12 final size:13
Alignment explanation
Indices: 7507898--7507934 Score: 58
Period size: 12 Copynumber: 2.9 Consensus size: 13
7507888 GTGTTTCAAA
7507898 AAAAAATAAAAAT
1 AAAAAATAAAAAT
*
7507911 AAAAAA-AATAAT
1 AAAAAATAAAAAT
7507923 AAAAAATAAAAA
1 AAAAAATAAAAA
7507935 AATTCTCGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (13 bp):
AAAAAATAAAAAT
Found at i:7507937 original size:18 final size:18
Alignment explanation
Indices: 7507895--7507936 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 18
7507885 CTCGTGTTTC
7507895 AAAAAAA-AATAAAAATA
1 AAAAAAATAATAAAAATA
7507912 AAAAAAATAATAAAAAATA
1 AAAAAAATAAT-AAAAATA
7507931 AAAAAA
1 AAAAAA
7507937 TTCTCGTGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 7 0.30
18 3 0.13
19 13 0.57
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (18 bp):
AAAAAAATAATAAAAATA
Found at i:7508082 original size:17 final size:18
Alignment explanation
Indices: 7508001--7508432 Score: 216
Period size: 18 Copynumber: 25.0 Consensus size: 18
7507991 AAATTTAGTG
7508001 TTTTCGTGTTTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
7508019 TTTTCGTGTTTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
*
7508037 TCTTT-GTGCTTTCAAAAA
1 T-TTTCGTGTTTTCAAAAA
* * *
7508055 TTCTGGCG-TTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
* **
7508072 TTTTCATGTTTAAAAAAAAA
1 TTTTCGTGTTT--TCAAAAA
* *
7508092 TTTACGTGTTTTCACAAA
1 TTTTCGTGTTTTCAAAAA
*
7508110 TTTTCGTG-TTTCACAAA
1 TTTTCGTGTTTTCAAAAA
*
7508127 TTCTCGTGTTTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
* * *
7508145 -CTCCAGTG-TTTC-AAAG
1 TTTTC-GTGTTTTCAAAAA
* *
7508161 TTTCCATGTTTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
* * **
7508179 TTCTCGCGTTTAAAAAAAA
1 TTTTCGTGTTT-TCAAAAA
**
7508198 AATTCGTG-TTTCAAAATA
1 TTTTCGTGTTTTCAAAA-A
* **
7508216 TTCTCG-CATTTC---AA
1 TTTTCGTGTTTTCAAAAA
**
7508230 TTTT--TGTTTT-TTAAA
1 TTTTCGTGTTTTCAAAAA
7508245 ---TCGTG-TTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
* *
7508259 ATGTCGTGTTTT-AAAAA
1 TTTTCGTGTTTTCAAAAA
*
7508276 TTTTCGTG-TTTCTAAAA
1 TTTTCGTGTTTTCAAAAA
* *
7508293 TTTCCCTGTTTT-AAAAA
1 TTTTCGTGTTTTCAAAAA
**
7508310 TTCCCGTG-TTTCAAAAAA
1 TTTTCGTGTTTTC-AAAAA
* *
7508328 ATGTCGTGTTTT-AAGAAA
1 TTTTCGTGTTTTCAA-AAA
* *
7508346 ATTTCGTTTTTTCTAAAAA
1 TTTTCGTGTTTTC-AAAAA
*
7508365 TTTTCGTG-TTTCTAAAA
1 TTTTCGTGTTTTCAAAAA
*
7508382 TTTTCGTG-TTT-ACAAA
1 TTTTCGTGTTTTCAAAAA
*
7508398 TTCTCGTGTTTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
*
7508416 TTCTCGTGTTTT-AAAAA
1 TTTTCGTGTTTTCAAAAA
7508433 AAAACTTTCG
Statistics
Matches: 315, Mismatches: 65, Indels: 69
0.70 0.14 0.15
Matches are distributed among these distances:
12 1 0.00
13 6 0.02
14 9 0.03
15 3 0.01
16 21 0.07
17 108 0.34
18 127 0.40
19 24 0.08
20 16 0.05
ACGTcount: A:0.30, C:0.14, G:0.11, T:0.44
Consensus pattern (18 bp):
TTTTCGTGTTTTCAAAAA
Found at i:7508155 original size:73 final size:73
Alignment explanation
Indices: 7508014--7508155 Score: 173
Period size: 73 Copynumber: 1.9 Consensus size: 73
7508004 TCGTGTTTTC
* * * *
7508014 AAAAATTTTCGTGTTTTCAAAAATCTTTGTGCTTTCAAAAATTCTGGCGTTTCAAAAATTTTCAT
1 AAAAATTTACGTGTTTTCAAAAATCTTTGTGCTTTCAAAAATTCTCGCGTTTCAAAAATCTCCAT
7508079 GTTTAAAA
66 GTTTAAAA
* * *
7508087 AAAAATTTACGTGTTTTCACAAAT-TTTCGTG-TTTCACAAATTCTCGTGTTTTCAAAAA-CTCC
1 AAAAATTTACGTGTTTTCAAAAATCTTT-GTGCTTTCAAAAATTCTCGCG-TTTCAAAAATCTCC
7508149 AGTGTTT
64 A-TGTTT
7508156 CAAAGTTTCC
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
72 20 0.34
73 39 0.66
ACGTcount: A:0.32, C:0.15, G:0.11, T:0.42
Consensus pattern (73 bp):
AAAAATTTACGTGTTTTCAAAAATCTTTGTGCTTTCAAAAATTCTCGCGTTTCAAAAATCTCCAT
GTTTAAAA
Found at i:7508284 original size:34 final size:34
Alignment explanation
Indices: 7508245--7508433 Score: 168
Period size: 34 Copynumber: 5.4 Consensus size: 34
7508235 GTTTTTTAAA
7508245 TCGTGTTTCAAAAAATGTCGTGTTTTAAAAATTT
1 TCGTGTTTCAAAAAATGTCGTGTTTTAAAAATTT
* * * *
7508279 TCGTGTTTC-TAAAATTTCCCTGTTTTAAAAATTC
1 TCGTGTTTCAAAAAATGT-CGTGTTTTAAAAATTT
* *
7508313 CCGTGTTTCAAAAAAATGTCGTGTTTTAAGAAAATT
1 TCGTGTTTC-AAAAAATGTCGTGTTTTAA-AAATTT
* * *
7508349 TCGTTTTTTCTAAAAATTTTCGTGTTTCT-AAAATTT
1 TCG-TGTTTC-AAAAAATGTCGTGTTT-TAAAAATTT
* * * *
7508385 TCGTGTTT-ACAAATTCTCGTGTTTTCAAAAATTC
1 TCGTGTTTCAAAAAATGTCGTGTTTT-AAAAATTT
*
7508419 TCGTGTTTTAAAAAA
1 TCGTGTTTCAAAAAA
7508434 AAACTTTCGT
Statistics
Matches: 124, Mismatches: 22, Indels: 17
0.76 0.13 0.10
Matches are distributed among these distances:
32 1 0.01
33 20 0.16
34 45 0.36
35 17 0.14
36 20 0.16
37 20 0.16
38 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.12, T:0.45
Consensus pattern (34 bp):
TCGTGTTTCAAAAAATGTCGTGTTTTAAAAATTT
Found at i:7508433 original size:18 final size:17
Alignment explanation
Indices: 7508245--7508432 Score: 150
Period size: 17 Copynumber: 10.8 Consensus size: 17
7508235 GTTTTTTAAA
* * *
7508245 TCGTGTTTCAAAAAATG
1 TCGTGTTTTAAAAATTC
*
7508262 TCGTGTTTTAAAAATTT
1 TCGTGTTTTAAAAATTC
*
7508279 TCGTGTTTCTAAAATTTC
1 TCGTGTTT-TAAAAATTC
*
7508297 -CCTGTTTTAAAAATTC
1 TCGTGTTTTAAAAATTC
* * * *
7508313 CCGTGTTTCAAAAAAATG
1 TCGTGTTT-TAAAAATTC
7508331 TCGTGTTTTAAGAAAATT-
1 TCGTGTTTT-A-AAAATTC
* *
7508349 TCGTTTTTTCTAAAAATTT
1 TCG-TGTTT-TAAAAATTC
*
7508368 TCGTGTTTCT-AAAATTT
1 TCGTGTTT-TAAAAATTC
*
7508385 TCGTG-TTTACAAATTC
1 TCGTGTTTTAAAAATTC
7508401 TCGTGTTTTCAAAAATTC
1 TCGTGTTTT-AAAAATTC
7508419 TCGTGTTTTAAAAA
1 TCGTGTTTTAAAAA
7508433 AAAACTTTCG
Statistics
Matches: 141, Mismatches: 19, Indels: 22
0.77 0.10 0.12
Matches are distributed among these distances:
15 1 0.01
16 20 0.14
17 54 0.38
18 52 0.37
19 13 0.09
20 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.12, T:0.45
Consensus pattern (17 bp):
TCGTGTTTTAAAAATTC
Found at i:7508443 original size:21 final size:20
Alignment explanation
Indices: 7508411--7508458 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 20
7508401 TCGTGTTTTC
7508411 AAAAATTCTCGTGTTTTAAAA
1 AAAAATTCTCGT-TTTTAAAA
7508432 AAAAACTT-TCGTTTTTAAAA
1 AAAAA-TTCTCGTTTTTAAAA
7508452 AAGAAAT
1 AA-AAAT
7508459 ACTGCGCTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
20 11 0.44
21 12 0.48
22 2 0.08
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.35
Consensus pattern (20 bp):
AAAAATTCTCGTTTTTAAAA
Found at i:7514763 original size:64 final size:64
Alignment explanation
Indices: 7514679--7514855 Score: 249
Period size: 64 Copynumber: 2.8 Consensus size: 64
7514669 ATATATGTTT
*
7514679 AAAGTTCTTGAGCTGTATTTAATGTATGAATTTTATATACATATGTGGTTCAAATATAGGTTAC
1 AAAGTTCTTGAGCTGAATTTAATGTATGAATTTTATATACATATGTGGTTCAAATATAGGTTAC
*
7514743 AAAGTTCTTGAGCTGAATTTAATGTATGAATTTTACT-TACATATGTGGTTCGAATATAGGTTAC
1 AAAGTTCTTGAGCTGAATTTAATGTATGAATTTTA-TATACATATGTGGTTCAAATATAGGTTAC
*
7514807 AAA-TTCTTTGAGCTGAATTTTAATGT-TGTAA--AT-TATACATATGTGGTTC
1 AAAGTTC-TTGAGCTGAA-TTTAATGTATG-AATTTTATATACATATGTGGTTC
7514856 GAATGTTTGT
Statistics
Matches: 105, Mismatches: 3, Indels: 12
0.88 0.03 0.10
Matches are distributed among these distances:
61 1 0.01
62 14 0.13
63 4 0.04
64 75 0.71
65 11 0.10
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (64 bp):
AAAGTTCTTGAGCTGAATTTAATGTATGAATTTTATATACATATGTGGTTCAAATATAGGTTAC
Found at i:7515034 original size:41 final size:41
Alignment explanation
Indices: 7514975--7515255 Score: 327
Period size: 41 Copynumber: 6.9 Consensus size: 41
7514965 ATATGAGATT
* * * *
7514975 TTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTAT
1 TTCAGACTTTATGTCTAGCAGGCTTGATGCCGGTGAATTAA
*
7515016 TTTAGACTTTATGTCTAGCAGGCTTGATGCCGGTGAATTAA
1 TTCAGACTTTATGTCTAGCAGGCTTGATGCCGGTGAATTAA
*
7515057 TTCAGACTTTATGTCTAGCAGGCTTTG-TGCCGGTGAAATGAA
1 TTCAGACTTTATGTCTAGCAGGC-TTGATGCCGGTG-AATTAA
* * * * *
7515099 -TCGGGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTAT
1 TTCAGACTTTATGTCTAGCAGGCTTGATGCCGGTGAATTAA
* *
7515139 TTTAGACTTTATGTCTAGCAGGCTTGATGCCGGTAAATTAA
1 TTCAGACTTTATGTCTAGCAGGCTTGATGCCGGTGAATTAA
*
7515180 TTCAGACTTTATGTCTAGCAGGCTTTG-TGCCGGTGAAATGAA
1 TTCAGACTTTATGTCTAGCAGGC-TTGATGCCGGTG-AATTAA
* * * * *
7515222 -TCGGGCTTTGTGCCTAGCAGGCTTAATGCCGGTG
1 TTCAGACTTTATGTCTAGCAGGCTTGATGCCGGTG
7515256 TTTTATATAG
Statistics
Matches: 205, Mismatches: 28, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
40 9 0.04
41 180 0.88
42 16 0.08
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.33
Consensus pattern (41 bp):
TTCAGACTTTATGTCTAGCAGGCTTGATGCCGGTGAATTAA
Found at i:7515198 original size:123 final size:123
Alignment explanation
Indices: 7514979--7515255 Score: 518
Period size: 123 Copynumber: 2.3 Consensus size: 123
7514969 GAGATTTTCA
7514979 GGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTATTTTAGACTTTATGTCTAGCAGGCTTGAT
1 GGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTATTTTAGACTTTATGTCTAGCAGGCTTGAT
*
7515044 GCCGGTGAATTAATTCAGACTTTATGTCTAGCAGGCTTTGTGCCGGTGAAATGAATCG
66 GCCGGTAAATTAATTCAGACTTTATGTCTAGCAGGCTTTGTGCCGGTGAAATGAATCG
7515102 GGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTATTTTAGACTTTATGTCTAGCAGGCTTGAT
1 GGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTATTTTAGACTTTATGTCTAGCAGGCTTGAT
7515167 GCCGGTAAATTAATTCAGACTTTATGTCTAGCAGGCTTTGTGCCGGTGAAATGAATCG
66 GCCGGTAAATTAATTCAGACTTTATGTCTAGCAGGCTTTGTGCCGGTGAAATGAATCG
** *
7515225 GGCTTTGTGCCTAGCAGGCTTAATGCCGGTG
1 GGCTTAATGCCTAGCAGGCTTGATGCCGGTG
7515256 TTTTATATAG
Statistics
Matches: 150, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
123 150 1.00
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.33
Consensus pattern (123 bp):
GGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTATTTTAGACTTTATGTCTAGCAGGCTTGAT
GCCGGTAAATTAATTCAGACTTTATGTCTAGCAGGCTTTGTGCCGGTGAAATGAATCG
Found at i:7515946 original size:14 final size:15
Alignment explanation
Indices: 7515922--7515956 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
7515912 TACTTTAATC
7515922 ATGGATTAGTATTT-T
1 ATGG-TTAGTATTTAT
7515937 ATGGTTAGTATTTAT
1 ATGGTTAGTATTTAT
7515952 ATGGT
1 ATGGT
7515957 AATATATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (15 bp):
ATGGTTAGTATTTAT
Found at i:7529899 original size:93 final size:91
Alignment explanation
Indices: 7529731--7530136 Score: 251
Period size: 88 Copynumber: 4.5 Consensus size: 91
7529721 ACAGACCAAA
* * * * * *
7529731 ACATAGCAGATCTGACCTTCACATGTTTACACTGAAGCAGATCCAATATAACAAGATTTGGCTTC
1 ACATAGCAGATCTGACCTTCAGATGTTTTCACTAAAGCAGATCCAAGATAAC-AGATCTGGCATC
*
7529796 TCTATCTTCGACGATAAGCAAATCGAAG
65 TCCATCTTCGACGA-AAGCAAATCGAAG
* *
7529824 ACATAGCAGATCTGACTTTTAGATGTTTTCACATCAAAGCAGATCCAAGATAACAGATCTGGCAT
1 ACATAGCAGATCTGACCTTCAGATGTTTTCAC-T-AAAGCAGATCCAAGATAACAGATCTGGCAT
* * *
7529889 CTCCAT-TTCGACG-GAG--AGT--AGG
64 CTCCATCTTCGACGAAAGCAAATCGAAG
* * * * *
7529911 TACATAGCAGGTCTAACCTTCAGATGTTTAT-ACTGAAGCAGATCAAAGAT----GATTTGGGCA
1 -ACATAGCAGATCTGACCTTCAGATGTTT-TCACTAAAGCAGATCCAAGATAACAGATCT-GGCA
* * ** *
7529971 T-T-CTTGTGTTTAC-AAGGAACAAATCGAAG
63 TCTCCATCT-TCGACGAA--AGCAAATCGAAG
* * ** * *
7530000 ACATAGCAGATTTGACTTTTGGATGTTCTCACACCAAAGCAGATCCAAGATAACAGATCTGGCAT
1 ACATAGCAGATCTGACCTTCAGATGTT-T-TCACTAAAGCAGATCCAAGATAACAGATCTGGCAT
*
7530065 CTCCAT-TTCGACAGAGAGC--A--G-AG
64 CTCCATCTTCGAC-GAAAGCAAATCGAAG
* * *
7530088 ACATAGCAGATCTAACCTTCAGATAATTTT-ACTGAAGCAGATCCAAGAT
1 ACATAGCAGATCTGACCTTCAGAT-GTTTTCACTAAAGCAGATCCAAGAT
7530137 GATTTGGCAT
Statistics
Matches: 236, Mismatches: 52, Indels: 57
0.68 0.15 0.17
Matches are distributed among these distances:
81 2 0.01
82 6 0.03
83 8 0.03
85 1 0.00
86 31 0.13
87 5 0.02
88 69 0.29
89 9 0.04
90 16 0.07
91 3 0.01
93 45 0.19
94 21 0.09
95 20 0.08
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (91 bp):
ACATAGCAGATCTGACCTTCAGATGTTTTCACTAAAGCAGATCCAAGATAACAGATCTGGCATCT
CCATCTTCGACGAAAGCAAATCGAAG
Found at i:7530040 original size:176 final size:175
Alignment explanation
Indices: 7529814--7530188 Score: 583
Period size: 176 Copynumber: 2.1 Consensus size: 175
7529804 CGACGATAAG
* * *
7529814 CAAATCGAAGACATAGCAGATCTGACTTTTAGATGTTTTCACATCAAAGCAGATCCAAGATAACA
1 CAAATCGAAGACATAGCAGATTTGACTTTTAGATGTTCTCACACCAAAGCAGATCCAAGATAACA
* * * *
7529879 GATCTGGCATCTCCATTTCGACGGAGAGTAG-GTACATAGCAGGTCTAACCTTCAGAT-GTTTAT
66 GATCTGGCATCTCCATTTCGACAGAGAGCAGAG-ACATAGCAGATCTAACCTTCAGATAATTT-T
* *
7529942 ACTGAAGCAGATCAAAGATGATTTGGGCATTCTTGTGTTTACAAGGAA
129 ACTGAAGCAGATCAAAGATGATTT-GGCATCCTTGTGTTCACAAGGAA
*
7529990 CAAATCGAAGACATAGCAGATTTGACTTTTGGATGTTCTCACACCAAAGCAGATCCAAGATAACA
1 CAAATCGAAGACATAGCAGATTTGACTTTTAGATGTTCTCACACCAAAGCAGATCCAAGATAACA
7530055 GATCTGGCATCTCCATTTCGACAGAGAGCAGAGACATAGCAGATCTAACCTTCAGATAATTTTAC
66 GATCTGGCATCTCCATTTCGACAGAGAGCAGAGACATAGCAGATCTAACCTTCAGATAATTTTAC
* *
7530120 TGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAG
131 TGAAGCAGATCAAAGATGATTTGGCATCCTTGTGTTCACAAGGAA
* *
7530165 CTAATCGAAGACACAGCAGATTTG
1 CAAATCGAAGACATAGCAGATTTG
7530189 GATTTCACGT
Statistics
Matches: 183, Mismatches: 14, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
175 42 0.23
176 137 0.75
177 4 0.02
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.26
Consensus pattern (175 bp):
CAAATCGAAGACATAGCAGATTTGACTTTTAGATGTTCTCACACCAAAGCAGATCCAAGATAACA
GATCTGGCATCTCCATTTCGACAGAGAGCAGAGACATAGCAGATCTAACCTTCAGATAATTTTAC
TGAAGCAGATCAAAGATGATTTGGCATCCTTGTGTTCACAAGGAA
Found at i:7546017 original size:20 final size:18
Alignment explanation
Indices: 7545969--7546019 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
7545959 TAGTTTTGAA
* *
7545969 ATTTTTTAAAAAATTATT
1 ATTTTTTAAAAAATAAAT
7545987 ATTTTTATAAAATAATAAAT
1 ATTTTT-TAAAA-AATAAAT
7546007 ATTATTTTAAAAA
1 ATT-TTTTAAAAA
7546020 TATTTTTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
18 6 0.21
19 6 0.21
20 13 0.46
21 3 0.11
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTTTTTAAAAAATAAAT
Found at i:7548981 original size:22 final size:22
Alignment explanation
Indices: 7548956--7549001 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
7548946 TATTTTTATT
7548956 TAAAT-TTAATTATAAAAATATA
1 TAAATATTAA-TATAAAAATATA
* *
7548978 TAAATATTAATATAAGAGTATA
1 TAAATATTAATATAAAAATATA
7549000 TA
1 TA
7549002 TTTCAATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (22 bp):
TAAATATTAATATAAAAATATA
Found at i:7550590 original size:21 final size:21
Alignment explanation
Indices: 7550564--7550605 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
7550554 GGAACCAGGT
7550564 TATCCCATGTAATCGCCTGAC
1 TATCCCATGTAATCGCCTGAC
7550585 TATCCCATGTAATCGCCTGAC
1 TATCCCATGTAATCGCCTGAC
7550606 GAATTTTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.33, G:0.14, T:0.29
Consensus pattern (21 bp):
TATCCCATGTAATCGCCTGAC
Found at i:7550974 original size:23 final size:22
Alignment explanation
Indices: 7550944--7550989 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
7550934 AGATATTTGT
7550944 AAATTTAA-TATATTATAATATA
1 AAATTTAAGTATA-TATAATATA
*
7550966 AAATCTTAAGTATATATTATATA
1 AAAT-TTAAGTATATATAATATA
7550989 A
1 A
7550990 TTATAATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 4 0.19
23 13 0.62
24 4 0.19
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (22 bp):
AAATTTAAGTATATATAATATA
Found at i:7551074 original size:12 final size:13
Alignment explanation
Indices: 7551042--7551083 Score: 59
Period size: 12 Copynumber: 3.2 Consensus size: 13
7551032 CAAATGAAAC
7551042 AAAAAGAAAGGAAG
1 AAAAAGAAA-GAAG
7551056 AAAAAGAAA-AAG
1 AAAAAGAAAGAAG
*
7551068 GAAAAGAAAGAAG
1 AAAAAGAAAGAAG
7551081 AAA
1 AAA
7551084 CGTAAGGCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 11 0.44
13 5 0.20
14 9 0.36
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAGAAG
Found at i:7559557 original size:20 final size:19
Alignment explanation
Indices: 7559505--7559558 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 19
7559495 ATTGATTTAC
*
7559505 TTATTATT-TTATATTATT
1 TTATTATTATTAAATTATT
* *
7559523 TTTTTATTCAATAAATTATT
1 TTATTATT-ATTAAATTATT
7559543 TTGATTATTATTAAAT
1 TT-ATTATTATTAAAT
7559559 AAATTTATAA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
18 7 0.25
20 16 0.57
21 5 0.18
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (19 bp):
TTATTATTATTAAATTATT
Found at i:7560563 original size:15 final size:15
Alignment explanation
Indices: 7560543--7560576 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
7560533 CATTTGGGTT
*
7560543 TTTTAATATATAATA
1 TTTTAATAAATAATA
*
7560558 TTTTAATAAATCATA
1 TTTTAATAAATAATA
7560573 TTTT
1 TTTT
7560577 GTAGGCAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (15 bp):
TTTTAATAAATAATA
Found at i:7566032 original size:31 final size:29
Alignment explanation
Indices: 7565996--7566074 Score: 90
Period size: 31 Copynumber: 2.6 Consensus size: 29
7565986 ATCCCAAAAT
7565996 TATACATGAACTTTGATTCAATG-TGCAATT-
1 TATACATGAACTTTGATT---TGATGCAATTA
*
7566026 TAATACATGAACTTTAATTTGATGCAATTA
1 T-ATACATGAACTTTGATTTGATGCAATTA
7566056 TATACATGAAACTTTGATT
1 TATACATG-AACTTTGATT
7566075 GTGGTTCAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
28 2 0.05
29 14 0.33
30 11 0.26
31 16 0.37
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.41
Consensus pattern (29 bp):
TATACATGAACTTTGATTTGATGCAATTA
Found at i:7566114 original size:31 final size:31
Alignment explanation
Indices: 7566028--7566114 Score: 97
Period size: 31 Copynumber: 2.9 Consensus size: 31
7566018 GTGCAATTTA
* *
7566028 ATACATG-AACTTTAA-TTTGATGCAATTAT
1 ATACATGAAACTTTAATTTTGATTCAAATAT
* * *
7566057 ATACATGAAACTTTGATTGTGGTTCAAATAT
1 ATACATGAAACTTTAATTTTGATTCAAATAT
* *
7566088 CTATATGAAACTTTAATTTTGATTCAA
1 ATACATGAAACTTTAATTTTGATTCAA
7566115 TCATGCACAT
Statistics
Matches: 46, Mismatches: 10, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
29 7 0.15
30 7 0.15
31 32 0.70
ACGTcount: A:0.37, C:0.10, G:0.11, T:0.41
Consensus pattern (31 bp):
ATACATGAAACTTTAATTTTGATTCAAATAT
Found at i:7577376 original size:23 final size:23
Alignment explanation
Indices: 7577346--7577397 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
7577336 TGCAACTTGG
7577346 TTTCATAATAATAGCTAAT-ATGC
1 TTTCATAATAATAG-TAATAATGC
* *
7577369 TTTCATAATGATAGTTATAATGC
1 TTTCATAATAATAGTAATAATGC
7577392 TTTCAT
1 TTTCAT
7577398 CTTTTTAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 3 0.12
23 23 0.88
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.44
Consensus pattern (23 bp):
TTTCATAATAATAGTAATAATGC
Found at i:7581739 original size:9 final size:9
Alignment explanation
Indices: 7581725--7581756 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
7581715 AACTTGGTGC
7581725 ATTTTGTTT
1 ATTTTGTTT
7581734 ATTTTGTTT
1 ATTTTGTTT
7581743 ATTTTGTTT
1 ATTTTGTTT
7581752 ATTTT
1 ATTTT
7581757 TAATATTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.12, C:0.00, G:0.09, T:0.78
Consensus pattern (9 bp):
ATTTTGTTT
Found at i:7581837 original size:23 final size:23
Alignment explanation
Indices: 7581807--7581858 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
7581797 TGCAACTTGG
7581807 TTTCATAATAATAGCTAAT-ATGC
1 TTTCATAATAATAG-TAATAATGC
* *
7581830 TTTCATAATGATAGTTATAATGC
1 TTTCATAATAATAGTAATAATGC
7581853 TTTCAT
1 TTTCAT
7581859 CTTTTTAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 3 0.12
23 23 0.88
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.44
Consensus pattern (23 bp):
TTTCATAATAATAGTAATAATGC
Found at i:7586781 original size:5 final size:5
Alignment explanation
Indices: 7586771--7586809 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
7586761 ACTTAGGATG
* *
7586771 TGAAT TGAAT TGAAT TGAAT ATGAAT TGTAT TAAAT TGA
1 TGAAT TGAAT TGAAT TGAAT -TGAAT TGAAT TGAAT TGA
7586810 GCTAAATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (5 bp):
TGAAT
Found at i:7587219 original size:24 final size:25
Alignment explanation
Indices: 7587172--7587219 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
7587162 TTGGCCCTCT
* * *
7587172 CGAGCTTCCCGTTATATGGTTCTTG
1 CGAGCTCCCCGTTATATAGCTCTTG
7587197 CGAGCTCCCCGTTA-ATAGCTCTT
1 CGAGCTCCCCGTTATATAGCTCTT
7587220 CGAAGCATTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.15, C:0.29, G:0.21, T:0.35
Consensus pattern (25 bp):
CGAGCTCCCCGTTATATAGCTCTTG
Found at i:7587464 original size:24 final size:24
Alignment explanation
Indices: 7587402--7587465 Score: 67
Period size: 24 Copynumber: 2.6 Consensus size: 24
7587392 ATGGCTATCT
* *
7587402 AGAGCTTCTCGATTAATGGCTCTTC
1 AGAGCTTC-CCATTATTGGCTCTTC
*
7587427 AGAGCTACCCATTATTGGCTCTT-
1 AGAGCTTCCCATTATTGGCTCTTC
*
7587450 ATGAGCTTCCTATTAT
1 A-GAGCTTCCCATTAT
7587466 ACAGCCTGGA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
23 1 0.03
24 25 0.76
25 7 0.21
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.38
Consensus pattern (24 bp):
AGAGCTTCCCATTATTGGCTCTTC
Found at i:7590032 original size:46 final size:48
Alignment explanation
Indices: 7589802--7590120 Score: 256
Period size: 46 Copynumber: 6.7 Consensus size: 48
7589792 GGTATAATGT
* * * *
7589802 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT-CATC-CATCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTACATCTCGT-AGGC
* ** * *
7589849 CGATGCCATGTCCCAGACATAGTCTTACACT-GACTATCGAAATC-AAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAG-CTA-C-ATCTCGTAGGC
* * *
7589898 TGATGCCATGTCCCAGAGATGGTCTTACACTAGCTCTCACATATC-T-GTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAG--CT-ACATCTCGTAG-GC
* *
7589948 CGATGCCATGTCCCAAACATGGTTTTACACT-GAC-ACATCTCGTA-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAG-CTACATCTCGTAGGC
7589994 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTTACATCTCG-AGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGC-TACATCTCGTAGGC
* * * *
7590040 CGATG-CATGTCTCAGACAT-GTCTTACACTAGC-ACTTGTCTC-AATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTAC--ATCTCGTAGGC
7590086 CGATGCCATGTCCCAGACATGGTCTTACACTAGCT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCT
7590121 CACAATAACC
Statistics
Matches: 225, Mismatches: 26, Indels: 40
0.77 0.09 0.14
Matches are distributed among these distances:
44 12 0.05
45 15 0.07
46 67 0.30
47 46 0.20
48 14 0.06
49 32 0.14
50 34 0.15
51 4 0.02
52 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTACATCTCGTAGGC
Found at i:7598494 original size:14 final size:14
Alignment explanation
Indices: 7598475--7598503 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
7598465 ATGATCCGTC
7598475 ATTACTAAGCATTA
1 ATTACTAAGCATTA
7598489 ATTACTAAGCATTA
1 ATTACTAAGCATTA
7598503 A
1 A
7598504 ATGTTTTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.14, G:0.07, T:0.34
Consensus pattern (14 bp):
ATTACTAAGCATTA
Found at i:7598516 original size:21 final size:21
Alignment explanation
Indices: 7598491--7598530 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
7598481 AAGCATTAAT
7598491 TACTAAGCATTAAATGTTTTA
1 TACTAAGCATTAAATGTTTTA
7598512 TACTAAGCATTAAATGTTT
1 TACTAAGCATTAAATGTTT
7598531 GGCAAATGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.42
Consensus pattern (21 bp):
TACTAAGCATTAAATGTTTTA
Found at i:7604155 original size:37 final size:37
Alignment explanation
Indices: 7604113--7604306 Score: 253
Period size: 37 Copynumber: 5.0 Consensus size: 37
7604103 TAGTTTTAGC
7604113 TACACTTATCTGATCAAGTGACAAAGTGATAAGTGGT
1 TACACTTATCTGATCAAGTGACAAAGTGATAAGTGGT
**
7604150 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
1 TACACTTATCTGATCAAGTGACAAAGTGATAAGTGGT
* *
7604187 TACACTTATCTGATCAAGAGACAAAGTGATAAGTGGC
1 TACACTTATCTGATCAAGTGACAAAGTGATAAGTGGT
*
7604224 TACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTT
1 TACACTTATCTGATCAAGTGACAAAGTGATAAGT-G--G---T
*
7604267 AGCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGT
1 ---TACACTTATCTGATCAAGTGACAAAGTGATAAGTGGT
7604307 AGCCTAGCTA
Statistics
Matches: 139, Mismatches: 9, Indels: 15
0.85 0.06 0.09
Matches are distributed among these distances:
37 102 0.73
38 1 0.01
40 2 0.01
43 1 0.01
45 1 0.01
46 32 0.23
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.29
Consensus pattern (37 bp):
TACACTTATCTGATCAAGTGACAAAGTGATAAGTGGT
Found at i:7604202 original size:74 final size:78
Alignment explanation
Indices: 7604075--7604306 Score: 274
Period size: 74 Copynumber: 2.9 Consensus size: 78
7604065 TTTGAGTACT
**
7604075 TCTGATCAAGTGACAAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGAAACAAAGTGATAAGTGG-AG--TTA--TACACTTATCTGATCAAGTGACAAAGT
7604140 GATAAGTGGTTACACTTA
61 GATAAGTGGTTACACTTA
*
7604158 TCTGATCAAGAAACAAAGTGATAAGT-G-G-T-TACACTTATCTGATCAAGAGACAAAGTGATAA
1 TCTGATCAAGAAACAAAGTGATAAGTGGAGTTATACACTTATCTGATCAAGTGACAAAGTGATAA
*
7604219 GTGGCTACACTTA
66 GTGGTTACACTTA
** * *
7604232 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGGCAAAGT
1 TCTGATCAAGAAACAAAGTGATAAGTGG-AG--TTA--TACACTTATCTGATCAAGTGACAAAGT
7604297 GATAAGTGGT
61 GATAAGTGGT
7604307 AGCCTAGCTA
Statistics
Matches: 130, Mismatches: 10, Indels: 18
0.82 0.06 0.11
Matches are distributed among these distances:
74 66 0.51
75 1 0.01
77 2 0.02
80 2 0.02
82 1 0.01
83 58 0.45
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.29
Consensus pattern (78 bp):
TCTGATCAAGAAACAAAGTGATAAGTGGAGTTATACACTTATCTGATCAAGTGACAAAGTGATAA
GTGGTTACACTTA
Found at i:7604331 original size:45 final size:46
Alignment explanation
Indices: 7604222--7604345 Score: 182
Period size: 46 Copynumber: 2.8 Consensus size: 46
7604212 GTGATAAGTG
* *
7604222 GCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTCTA
*
7604268 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGC-CTA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTCTA
**
7604313 GCTACACTTATCCAATCAAG-GAC-AAGTGATAAG
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAG
7604346 AGGTCATATG
Statistics
Matches: 72, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
43 10 0.14
44 2 0.03
45 20 0.28
46 40 0.56
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (46 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTCTA
Found at i:7610259 original size:20 final size:20
Alignment explanation
Indices: 7610234--7610279 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
7610224 TTTATAGTTT
*
7610234 TTGAAATACTATAATTGTTG
1 TTGAAACACTATAATTGTTG
7610254 TTGAAACACTATAATTGTTG
1 TTGAAACACTATAATTGTTG
7610274 TTGAAA
1 TTGAAA
7610280 ATGTTCCGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.37, C:0.07, G:0.15, T:0.41
Consensus pattern (20 bp):
TTGAAACACTATAATTGTTG
Found at i:7621130 original size:15 final size:15
Alignment explanation
Indices: 7621106--7621151 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
7621096 ATATAAATAG
*
7621106 AAATAAAAATATAAT
1 AAATAGAAATATAAT
7621121 AAATAGAAATATAAT
1 AAATAGAAATATAAT
7621136 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
7621152 ATAGATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:7621139 original size:23 final size:23
Alignment explanation
Indices: 7621073--7621139 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 23
7621063 TATAAGAAAA
*
7621073 ATAAT-AAT-GAAA-ATAATATT
1 ATAATAAATAGAAATATAATAAT
7621093 AGTATATAAATAGAAATA-AA-AAT
1 A-TA-ATAAATAGAAATATAATAAT
7621116 ATAATAAATAGAAATATAATAAT
1 ATAATAAATAGAAATATAATAAT
7621139 A
1 A
7621140 GTAGAAATAT
Statistics
Matches: 39, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
20 1 0.03
21 15 0.38
22 6 0.15
23 10 0.26
24 6 0.15
25 1 0.03
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (23 bp):
ATAATAAATAGAAATATAATAAT
Found at i:7621154 original size:44 final size:44
Alignment explanation
Indices: 7621100--7621186 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 44
7621090 ATTAGTATAT
7621100 AAATAGAAATA-A-AAATATAATAAATAGA-AATATAATAATAGTAG
1 AAATAGAAATAGATAAATA-AA-AAATAGATAA-ATAATAATAGTAG
* *
7621144 AAATATAAATAGATAAATAAAAATTAGATAAATAATAATAGTA
1 AAATAGAAATAGATAAATAAAAAATAGATAAATAATAATAGTA
7621187 TTAGAATAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
44 28 0.74
45 5 0.13
46 5 0.13
ACGTcount: A:0.66, C:0.00, G:0.08, T:0.26
Consensus pattern (44 bp):
AAATAGAAATAGATAAATAAAAAATAGATAAATAATAATAGTAG
Found at i:7621171 original size:15 final size:14
Alignment explanation
Indices: 7621098--7621214 Score: 62
Period size: 15 Copynumber: 8.1 Consensus size: 14
7621088 ATATTAGTAT
*
7621098 ATAAATAGAAATA-
1 ATAAATAAAAATAG
*
7621111 AAAATATAATAAATAG
1 ATAA-ATAA-AAATAG
*
7621127 A-AATATAATAATAG
1 ATAA-ATAAAAATAG
* *
7621141 TAGAAATATAAATAG
1 -ATAAATAAAAATAG
7621156 ATAAATAAAAATTAG
1 ATAAATAAAAA-TAG
*
7621171 ATAAATAATAATAG
1 ATAAATAAAAATAG
*
7621185 TATTAGAATAACAA-A-
1 -A-TA-AATAAAAATAG
*
7621200 ATAAATACAAATAG
1 ATAAATAAAAATAG
7621214 A
1 A
7621215 AACATAATAA
Statistics
Matches: 82, Mismatches: 11, Indels: 21
0.72 0.10 0.18
Matches are distributed among these distances:
12 6 0.07
13 6 0.07
14 22 0.27
15 35 0.43
16 6 0.07
17 7 0.09
ACGTcount: A:0.65, C:0.02, G:0.08, T:0.26
Consensus pattern (14 bp):
ATAAATAAAAATAG
Found at i:7622044 original size:35 final size:35
Alignment explanation
Indices: 7621998--7622067 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
7621988 TTTAACGAGA
7621998 ATGGTGCAAAGACTATAAAAGGGCCAATTTTGCCT
1 ATGGTGCAAAGACTATAAAAGGGCCAATTTTGCCT
7622033 ATGGTGCAAAGACTATAAAAGGGCCAATTTTGCCT
1 ATGGTGCAAAGACTATAAAAGGGCCAATTTTGCCT
7622068 GGACCTGCTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (35 bp):
ATGGTGCAAAGACTATAAAAGGGCCAATTTTGCCT
Found at i:7622273 original size:44 final size:45
Alignment explanation
Indices: 7622204--7622302 Score: 148
Period size: 44 Copynumber: 2.2 Consensus size: 45
7622194 TGAAACTTAA
* *
7622204 AGGG-GATAAAATCTGGTAATCTTCAGTCTGCTCCACTACTGCTT
1 AGGGAGATAAAATCTGGTAATCTTCAGCCTGCTCCACTACTACTT
* *
7622248 AGGGAGATAAGATCT-GTAATTTTCAGCCTGCTCCACTACTACTT
1 AGGGAGATAAAATCTGGTAATCTTCAGCCTGCTCCACTACTACTT
7622292 AGGGAGATAAA
1 AGGGAGATAAA
7622303 GCTTGTAACA
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
44 40 0.82
45 9 0.18
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.29
Consensus pattern (45 bp):
AGGGAGATAAAATCTGGTAATCTTCAGCCTGCTCCACTACTACTT
Found at i:7623786 original size:44 final size:44
Alignment explanation
Indices: 7623732--7624007 Score: 199
Period size: 44 Copynumber: 6.3 Consensus size: 44
7623722 ATCTGCTCTG
* *
7623732 CTACTACTTAGGGAGATAAGATCTATAATTTTCAGCTTGTTTCC
1 CTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCCTGTTTCC
* * *
7623776 CTAGTGCTTAGGGAGATAAGATTTGTAA-TTTCAGCCTGTTTCC
1 CTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCCTGTTTCC
* * * * *** * * *
7623819 CCAGTGCTTAGGGGGATAAG-GCTCACCGTCTTC-GATCTG-CTCC
1 CTACTGCTTAGGGAGATAAGATCT-ATAATTTTCAG-CCTGTTTCC
* *
7623862 ACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCCTGTTTCC
* * * * * * *
7623907 CTACTGCTTAGGGGGTTAAG-GCTCACT-GTCTTC-GATCTG-CTCC
1 CTACTGCTTAGGGAGATAAGATCT-A-TAATTTTCAG-CCTGTTTCC
* *
7623950 ACTACTGCTTAGGGAGATAAGATCTTTAATTTTCAGCCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCCTGTTTCC
7623995 CTACTGCTTAGGG
1 CTACTGCTTAGGG
7624008 GGTTAAGGCT
Statistics
Matches: 171, Mismatches: 46, Indels: 30
0.69 0.19 0.12
Matches are distributed among these distances:
42 1 0.01
43 42 0.25
44 117 0.68
45 11 0.06
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.34
Consensus pattern (44 bp):
CTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCCTGTTTCC
Found at i:7623825 original size:43 final size:44
Alignment explanation
Indices: 7623738--7623838 Score: 150
Period size: 43 Copynumber: 2.3 Consensus size: 44
7623728 TCTGCTACTA
* *
7623738 CTTAGGGAGATAAGATCTATAATTTTCAGCTTGTTTCCCTAGTG
1 CTTAGGGAGATAAGATCTATAATTTTCAGCCTGTTTCCCCAGTG
* *
7623782 CTTAGGGAGATAAGATTTGTAA-TTTCAGCCTGTTTCCCCAGTG
1 CTTAGGGAGATAAGATCTATAATTTTCAGCCTGTTTCCCCAGTG
*
7623825 CTTAGGGGGATAAG
1 CTTAGGGAGATAAG
7623839 GCTCACCGTC
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
43 32 0.62
44 20 0.38
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.35
Consensus pattern (44 bp):
CTTAGGGAGATAAGATCTATAATTTTCAGCCTGTTTCCCCAGTG
Found at i:7623928 original size:88 final size:88
Alignment explanation
Indices: 7623780--7624475 Score: 759
Period size: 88 Copynumber: 8.1 Consensus size: 88
7623770 GTTTCCCTAG
* * * * *
7623780 TGCTTAGGGAGATAAGATTTGTAA-TTTCAGCCTGTTTCCCCAGTGCTTAGGGGGATAAGGCTCA
1 TGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCA
*
7623844 CCGTCTTCGATCTGCTCCACTAC
66 CTGTCTTCGATCTGCTCCACTAC
7623867 TGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCA
1 TGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCA
7623932 CTGTCTTCGATCTGCTCCACTAC
66 CTGTCTTCGATCTGCTCCACTAC
*
7623955 TGCTTAGGGAGATAAGATCTTTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCA
1 TGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCA
7624020 CTGTCTTCGATCTGCTCCACTAC
66 CTGTCTTCGATCTGCTCCACTAC
* ** * ** * * * * *
7624043 TGCTTAGGGAGATAAGATCTG-----TT-ACCCTACT-GCCTAGGGAGTTA-AGGCTCACCA-TC
1 TGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTG-CTTAGGGGGTTA--AGGC
*
7624099 TTCGATCTG-C-TCCATACTGCT----TA-
63 -TC-A-CTGTCTTCGAT-CTGCTCCACTAC
*
7624122 -----A-GGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCA
1 TGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCA
**
7624181 C-CACTTCGATCTGCTCCACTAC
66 CTGTCTTCGATCTGCTCCACTAC
* *
7624203 TACTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCA
1 TGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCA
**
7624268 C-CACTTCGATCTGCTCCACTAC
66 CTGTCTTCGATCTGCTCCACTAC
* * *
7624290 TACTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCG
1 TGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCA
*
7624355 CTGTCTTCGATCTGCTCCATTAC
66 CTGTCTTCGATCTGCTCCACTAC
* * * *
7624378 TGTTTAGGG-G---AGATCT-TTATTTTCCAGCCTGTTACCCTACTGCTTAAGGGGTTAAGGCTT
1 TGCTTAGGGAGATAAGATCTGTAATTTT-CAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTC
** *
7624438 GTTGTCTTCGATCTGCTCCACTAT
65 ACTGTCTTCGATCTGCTCCACTAC
*
7624462 TGTTTAGGGGAGAT
1 TGCTTA-GGGAGAT
7624476 CTATATTTTT
Statistics
Matches: 526, Mismatches: 47, Indels: 71
0.82 0.07 0.11
Matches are distributed among these distances:
73 14 0.03
74 1 0.00
76 7 0.01
77 5 0.01
78 5 0.01
79 9 0.02
80 12 0.02
81 9 0.02
82 9 0.02
83 15 0.03
84 73 0.14
85 6 0.01
86 2 0.00
87 169 0.32
88 190 0.36
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.33
Consensus pattern (88 bp):
TGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCA
CTGTCTTCGATCTGCTCCACTAC
Found at i:7624043 original size:44 final size:44
Alignment explanation
Indices: 7623823--7624058 Score: 200
Period size: 44 Copynumber: 5.4 Consensus size: 44
7623813 GTTTCCCCAG
*
7623823 TGCTTAGGGGGATAAGGCTCACCGTCTTCGATCTGCTCCACTAC
1 TGCTTAGGGGGATAAGGCTCACTGTCTTCGATCTGCTCCACTAC
* * * * * *
7623867 TGCTTAGGGAGATAAGATCTGTAAT-T-TTC-AGCCTGTTACC-CTAC
1 TGCTTAGGGGGATAAG-GCT-CACTGTCTTCGA-TCTGCT-CCACTAC
*
7623911 TGCTTAGGGGGTTAAGGCTCACTGTCTTCGATCTGCTCCACTAC
1 TGCTTAGGGGGATAAGGCTCACTGTCTTCGATCTGCTCCACTAC
* * * * * *
7623955 TGCTTAGGGAGATAAGATCTTTAAT-T-TTC-AGCCTGTTACC-CTAC
1 TGCTTAGGGGGATAAG-GC-TCACTGTCTTCGA-TCTGCT-CCACTAC
*
7623999 TGCTTAGGGGGTTAAGGCTCACTGTCTTCGATCTGCTCCACTAC
1 TGCTTAGGGGGATAAGGCTCACTGTCTTCGATCTGCTCCACTAC
*
7624043 TGCTTAGGGAGATAAG
1 TGCTTAGGGGGATAAG
7624059 ATCTGTTACC
Statistics
Matches: 146, Mismatches: 30, Indels: 32
0.70 0.14 0.15
Matches are distributed among these distances:
42 5 0.03
43 11 0.08
44 115 0.79
45 11 0.08
46 4 0.03
ACGTcount: A:0.21, C:0.24, G:0.24, T:0.32
Consensus pattern (44 bp):
TGCTTAGGGGGATAAGGCTCACTGTCTTCGATCTGCTCCACTAC
Found at i:7624062 original size:30 final size:30
Alignment explanation
Indices: 7624028--7624088 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
7624018 CACTGTCTTC
*
7624028 GATCTGCT-CCACTACTGCTTAGGGAGATAA
1 GATCTGCTACC-CTACTGCCTAGGGAGATAA
* *
7624058 GATCTGTTACCCTACTGCCTAGGGAGTTAA
1 GATCTGCTACCCTACTGCCTAGGGAGATAA
7624088 G
1 G
7624089 GCTCACCATC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 25 0.93
31 2 0.07
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (30 bp):
GATCTGCTACCCTACTGCCTAGGGAGATAA
Found at i:7624108 original size:74 final size:73
Alignment explanation
Indices: 7623987--7624137 Score: 248
Period size: 74 Copynumber: 2.1 Consensus size: 73
7623977 AATTTTCAGC
* * ** *
7623987 CTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACTGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 CTGTTACCCTACTGCCTAGGGAGTTAAGGCTCACCATCTTCGATCTGCTCCA-TACTGCTTAAGG
7624052 AGATAAGAT
65 AGATAAGAT
7624061 CTGTTACCCTACTGCCTAGGGAGTTAAGGCTCACCATCTTCGATCTGCTCCATACTGCTTAAGGA
1 CTGTTACCCTACTGCCTAGGGAGTTAAGGCTCACCATCTTCGATCTGCTCCATACTGCTTAAGGA
7624126 GATAAGAT
66 GATAAGAT
7624134 CTGT
1 CTGT
7624138 AATTTTCAGC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
73 24 0.33
74 48 0.67
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.30
Consensus pattern (73 bp):
CTGTTACCCTACTGCCTAGGGAGTTAAGGCTCACCATCTTCGATCTGCTCCATACTGCTTAAGGA
GATAAGAT
Found at i:7624214 original size:87 final size:87
Alignment explanation
Indices: 7624061--7624436 Score: 557
Period size: 87 Copynumber: 4.4 Consensus size: 87
7624051 GAGATAAGAT
* * * * *
7624061 CTGTTACCCTACTGCCTAGGGAGTTAAGGCTCACCATCTTCGATCTGCTCCA-TACTGCTTAAGG
1 CTGTTACCCTACTACTTAGGGGGTTAAGGCTCACCA-CTTCGATCTGCTCCACTACTACTTAGGG
7624125 AGATAAGATCTGTAATTTTCAGC
65 AGATAAGATCTGTAATTTTCAGC
7624148 CTGTTACCCTACTACTTAGGGGGTTAAGGCTCACCACTTCGATCTGCTCCACTACTACTTAGGGA
1 CTGTTACCCTACTACTTAGGGGGTTAAGGCTCACCACTTCGATCTGCTCCACTACTACTTAGGGA
7624213 GATAAGATCTGTAATTTTCAGC
66 GATAAGATCTGTAATTTTCAGC
7624235 CTGTTACCCTACTACTTAGGGGGTTAAGGCTCACCACTTCGATCTGCTCCACTACTACTTAGGGA
1 CTGTTACCCTACTACTTAGGGGGTTAAGGCTCACCACTTCGATCTGCTCCACTACTACTTAGGGA
7624300 GATAAGATCTGTAATTTTCAGC
66 GATAAGATCTGTAATTTTCAGC
* ** * **
7624322 CTGTTACCCTACTACTTAGGGGGTTAAGGCTCGCTGTCTTCGATCTGCTCCATTACTGTTTAGGG
1 CTGTTACCCTACTACTTAGGGGGTTAAGGCTCAC-CACTTCGATCTGCTCCACTACTACTTAGGG
*
7624387 -G---AGATCT-TTATTTTCCAGC
65 AGATAAGATCTGTAATTTT-CAGC
* *
7624406 CTGTTACCCTACTGCTTAAGGGGTTAAGGCT
1 CTGTTACCCTACTACTTAGGGGGTTAAGGCT
7624437 TGTTGTCTTC
Statistics
Matches: 272, Mismatches: 14, Indels: 9
0.92 0.05 0.03
Matches are distributed among these distances:
83 6 0.02
84 39 0.14
86 15 0.06
87 187 0.69
88 25 0.09
ACGTcount: A:0.22, C:0.25, G:0.21, T:0.32
Consensus pattern (87 bp):
CTGTTACCCTACTACTTAGGGGGTTAAGGCTCACCACTTCGATCTGCTCCACTACTACTTAGGGA
GATAAGATCTGTAATTTTCAGC
Found at i:7624298 original size:43 final size:43
Alignment explanation
Indices: 7624156--7624298 Score: 150
Period size: 43 Copynumber: 3.3 Consensus size: 43
7624146 GCCTGTTACC
7624156 CTACTACTTAGGGGGTTAAGGCTCACCACTTCGATCTGCTCCA
1 CTACTACTTAGGGGGTTAAGGCTCACCACTTCGATCTGCTCCA
* * * * * * *
7624199 CTACTACTTAGGGAGATAAGATCTGTA--ATTTTC-AGCCTGTTACC-
1 CTACTACTTAGGGGGTTAAG-GCT-CACCA-CTTCGA-TCTGCT-CCA
7624243 CTACTACTTAGGGGGTTAAGGCTCACCACTTCGATCTGCTCCA
1 CTACTACTTAGGGGGTTAAGGCTCACCACTTCGATCTGCTCCA
7624286 CTACTACTTAGGG
1 CTACTACTTAGGG
7624299 AGATAAGATC
Statistics
Matches: 77, Mismatches: 14, Indels: 18
0.71 0.13 0.17
Matches are distributed among these distances:
42 3 0.04
43 42 0.55
44 29 0.38
45 3 0.04
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (43 bp):
CTACTACTTAGGGGGTTAAGGCTCACCACTTCGATCTGCTCCA
Found at i:7624351 original size:174 final size:171
Alignment explanation
Indices: 7623782--7624436 Score: 784
Period size: 174 Copynumber: 3.8 Consensus size: 171
7623772 TTCCCTAGTG
* * * * * * *
7623782 CTTAGGGAGATAAGATTTGTAA-TTTCAGCCTGTTTCCCCAGTGCTTAGGGGGATAAGGCTCAC-
1 CTTAAGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCACT
* *
7623845 CGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTT-CAGCCTGTTACCCT
66 C-ACTTCGATCTGCTCCACTACTACTTAGGG-G---AGATCT-TAATTTTCCAGCCTGTTACCCT
** *
7623909 ACTGCTTAGGGGGTTAAGGCTCACTGTCTTCGATCTGCTCCACTACTG
125 ACTGCTTAGGGGGTTAAGGCTCACCATCTTCGATCTGCTCCA-TACTA
* * *
7623957 CTTAGGGAGATAAGATCTTTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACT
1 CTTAAGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCACT
** * * * *
7624022 GTCTTCGATCTGCTCCACTACTGCTTA-GGGAGA---TAA-----GA-TCTGTTACCCTACTGCC
66 CACTTCGATCTGCTCCACTACTACTTAGGGGAGATCTTAATTTTCCAGCCTGTTACCCTACTGCT
* *
7624077 TAGGGAGTTAAGGCTCACCATCTTCGATCTGCTCCATACTG
131 TAGGGGGTTAAGGCTCACCATCTTCGATCTGCTCCATACTA
7624118 CTTAAGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCAC-
1 CTTAAGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCACT
7624182 CACTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTAATTTT-CAGCCTGTTACCCTA
66 CACTTCGATCTGCTCCACTACTACTTAGGG-G---AGATCT-TAATTTTCCAGCCTGTTACCCTA
*
7624246 CTACTTAGGGGGTTAAGGCTCACCA-CTTCGATCTGCTCCACTACTA
126 CTGCTTAGGGGGTTAAGGCTCACCATCTTCGATCTGCTCCA-TACTA
* *
7624292 CTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCGCT
1 CTTAAGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCACT
** * ** *
7624357 GTCTTCGATCTGCTCCATTACTGTTTAGGGGAGATCTTTATTTTCCAGCCTGTTACCCTACTGCT
66 CACTTCGATCTGCTCCACTACTACTTAGGGGAGATCTTAATTTTCCAGCCTGTTACCCTACTGCT
*
7624422 TAAGGGGTTAAGGCT
131 TAGGGGGTTAAGGCT
7624437 TGTTGTCTTC
Statistics
Matches: 426, Mismatches: 35, Indels: 42
0.85 0.07 0.08
Matches are distributed among these distances:
160 24 0.06
161 68 0.16
162 49 0.12
163 1 0.00
165 3 0.01
167 3 0.01
169 3 0.01
170 6 0.01
171 42 0.10
173 16 0.04
174 101 0.24
175 47 0.11
176 63 0.15
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.32
Consensus pattern (171 bp):
CTTAAGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCACT
CACTTCGATCTGCTCCACTACTACTTAGGGGAGATCTTAATTTTCCAGCCTGTTACCCTACTGCT
TAGGGGGTTAAGGCTCACCATCTTCGATCTGCTCCATACTA
Found at i:7624445 original size:84 final size:85
Alignment explanation
Indices: 7624061--7624488 Score: 476
Period size: 87 Copynumber: 5.0 Consensus size: 85
7624051 GAGATAAGAT
* * * *
7624061 CTGTTACCCTACTGCCTAGGGAGTTAAGGC-TCACCATCTTCGATCTGCTCCA-TACTGCTTAAG
1 CTGTTACCCTACTACTTAGGGGGTTAAGGCTTCACC-TCTTCGATCTGCTCCACTACTG-TTTAG
*
7624124 GAGATAAGATCTGTAATTTTCAGC
64 G-GA-GAGATCTGTAATTTTCAGC
* **
7624148 CTGTTACCCTACTACTTAGGGGGTTAAGGC-TCACCACTTCGATCTGCTCCACTACTACTTAGGG
1 CTGTTACCCTACTACTTAGGGGGTTAAGGCTTCACCTCTTCGATCTGCTCCACTACTGTTTAGGG
7624212 AGATAAGATCTGTAATTTTCAGC
66 AG---AGATCTGTAATTTTCAGC
* **
7624235 CTGTTACCCTACTACTTAGGGGGTTAAGGC-TCACCACTTCGATCTGCTCCACTACTACTTAGGG
1 CTGTTACCCTACTACTTAGGGGGTTAAGGCTTCACCTCTTCGATCTGCTCCACTACTGTTTAGGG
7624299 AGATAAGATCTGTAATTTTCAGC
66 AG---AGATCTGTAATTTTCAGC
* * *
7624322 CTGTTACCCTACTACTTAGGGGGTTAAGGC-TCGCTGTCTTCGATCTGCTCCATTACTGTTTAGG
1 CTGTTACCCTACTACTTAGGGGGTTAAGGCTTCAC-CTCTTCGATCTGCTCCACTACTGTTTAGG
*
7624386 G-GAGATCT-TTATTTTCCAGC
65 GAGAGATCTGTAATTTT-CAGC
* * **** *
7624406 CTGTTACCCTACTGCTTAAGGGGTTAAGGCTTGTTGTCTTCGATCTGCTCCACTATTGTTTAGGG
1 CTGTTACCCTACTACTTAGGGGGTTAAGGCTTCACCTCTTCGATCTGCTCCACTACTGTTTAGGG
* *
7624471 -GAGATCTATATTTTTCAG
66 AGAGATCTGTAATTTTCAG
7624489 TCTGCTCCAT
Statistics
Matches: 309, Mismatches: 24, Indels: 19
0.88 0.07 0.05
Matches are distributed among these distances:
83 6 0.02
84 76 0.25
85 8 0.03
86 19 0.06
87 175 0.57
88 25 0.08
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (85 bp):
CTGTTACCCTACTACTTAGGGGGTTAAGGCTTCACCTCTTCGATCTGCTCCACTACTGTTTAGGG
AGAGATCTGTAATTTTCAGC
Found at i:7624737 original size:178 final size:178
Alignment explanation
Indices: 7624485--7624850 Score: 527
Period size: 178 Copynumber: 2.1 Consensus size: 178
7624475 TCTATATTTT
* * ** *
7624485 TCAGTCTGCTCCATAACTGATACATGGAGATAAGACTGCAATTTTCAACCTACTCTCTTGCTACC
1 TCAGTCTACTCCATAACCGATACATGGAGATAAGACTGCAATTTTCAAAATACTATCTTGCTACC
* * **
7624550 TCAGAGAGATAAAGTTGGTGGCTAAAATCTGCTCCATAGCTGATACAT-GAGATAGGACTCGCCA
66 TCAGAGAGATAAAGCTGGTGGCTAAAATCTGCTCCATAGCTAATACATGGAGATAAAACTCGCCA
** *
7624614 TTTTCGATCTGCTCCATAGTTGATACATAGAGATAAGATCTGTAATTC
131 TTTTCGATCTGCTCCATAGCCGATACATAAAGATAAGATCTGTAATTC
* * * *
7624662 TCAGTCTACTCCATAGCCGATACATGGAGATAATACCTGTAATTTTCAAAATGCTATCTTGCTAC
1 TCAGTCTACTCCATAACCGATACATGGAGATAAGA-CTGCAATTTTCAAAATACTATCTTGCTAC
* *
7624727 CTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCTAATACATGGAGATAAAACTCTCC
65 CTCAGAGAGATAAAGCTGGTGGCTAAAATCTGCTCCATAGCTAATACATGGAGATAAAACTCGCC
* *
7624792 ATTTTCGATTTGCTCCATAGCCGATACATAAAGATAAGATCTGTAATTT
130 ATTTTCGATCTGCTCCATAGCCGATACATAAAGATAAGATCTGTAATTC
*
7624841 TTAGTCTACT
1 TCAGTCTACT
7624851 TCCTTGCTAC
Statistics
Matches: 166, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
177 31 0.19
178 70 0.42
179 65 0.39
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (178 bp):
TCAGTCTACTCCATAACCGATACATGGAGATAAGACTGCAATTTTCAAAATACTATCTTGCTACC
TCAGAGAGATAAAGCTGGTGGCTAAAATCTGCTCCATAGCTAATACATGGAGATAAAACTCGCCA
TTTTCGATCTGCTCCATAGCCGATACATAAAGATAAGATCTGTAATTC
Found at i:7624796 original size:89 final size:89
Alignment explanation
Indices: 7624489--7624797 Score: 256
Period size: 89 Copynumber: 3.5 Consensus size: 89
7624479 TATTTTTCAG
* * * *
7624489 TCTGCTCCATAACTGATACATGGAGATAAGACT-GCAATTTTCAACCTACTCTCTTGCTACCTCA
1 TCTGCTCCATAGCTGATACATGGAGATAAGACTCGCAATTTTCAAACTGCTATCTTGCTACCTCA
* *
7624553 GAGAGATAAAGTTGGTGGCTAAAA
66 GAGAGATAAGGCTGGTGGCTAAAA
* * * * * *
7624577 TCTGCTCCATAGCTGATACAT-GAGATAGGACTCGCCATTTTCGATCTGCTCCATAGTTGATA--
1 TCTGCTCCATAGCTGATACATGGAGATAAGACTCGCAATTTTCAAACTGCT--AT-CTTGCTACC
* * ** * *
7624639 -CATAGAGATAAGATCT-GTAATTCT-CAG
63 TCAGAGAGATAAG-GCTGGT--GGCTAAAA
* * * * *
7624666 TCTACTCCATAGCCGATACATGGAGATAATAC-CTGTAATTTTCAAAATGCTATCTTGCTACCTC
1 TCTGCTCCATAGCTGATACATGGAGATAAGACTC-GCAATTTTCAAACTGCTATCTTGCTACCTC
7624730 AGAGAGATAAGGCTGGTGGCTAAAA
65 AGAGAGATAAGGCTGGTGGCTAAAA
* * * *
7624755 TCTGCTCCATAGCTAATACATGGAGATAAAACTCTCCATTTTC
1 TCTGCTCCATAGCTGATACATGGAGATAAGACTCGCAATTTTC
7624798 GATTTGCTCC
Statistics
Matches: 165, Mismatches: 41, Indels: 29
0.70 0.17 0.12
Matches are distributed among these distances:
87 15 0.09
88 49 0.30
89 59 0.36
90 37 0.22
91 5 0.03
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.30
Consensus pattern (89 bp):
TCTGCTCCATAGCTGATACATGGAGATAAGACTCGCAATTTTCAAACTGCTATCTTGCTACCTCA
GAGAGATAAGGCTGGTGGCTAAAA
Found at i:7635647 original size:49 final size:49
Alignment explanation
Indices: 7635588--7635716 Score: 170
Period size: 49 Copynumber: 2.6 Consensus size: 49
7635578 ATCAAAGTCA
* *
7635588 ATGCCATGTCCCAAACAGGTCTTACACTGACTTTCATATATCAAG-GCCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATC-AGTGCCG
** * * * *
7635637 ATGCTGTGTCCCGGACAGGTCTTACACTGGCTCTCATCTATCAGTGTCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCAGTGCCG
7635686 ATGCCATGTCCCAGACAGGTCTTACACTGAC
1 ATGCCATGTCCCAGACAGGTCTTACACTGAC
7635717 ACATAACAAG
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
48 2 0.03
49 65 0.97
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (49 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCAGTGCCG
Found at i:7640871 original size:20 final size:20
Alignment explanation
Indices: 7640846--7640890 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
7640836 GAATTTTCAA
7640846 TATTTTTATTTTTATAAAAT
1 TATTTTTATTTTTATAAAAT
7640866 TATTTTTATTTTTATAAAAT
1 TATTTTTATTTTTATAAAAT
7640886 TATTT
1 TATTT
7640891 AGGTAGTCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (20 bp):
TATTTTTATTTTTATAAAAT
Found at i:7641860 original size:45 final size:45
Alignment explanation
Indices: 7641787--7641896 Score: 175
Period size: 45 Copynumber: 2.4 Consensus size: 45
7641777 TCCCCTTAAG
7641787 TATTGGTAGAAGTCTGATAATTGGCTTGGAATTCTCTCTAACTTACTTC
1 TATTGGTAGAA--CT-A-AATTGGCTTGGAATTCTCTCTAACTTACTTC
*
7641836 TATTGGTAGAACTAAATTGGCTTGGAATTCTCTCTGACTTACTTC
1 TATTGGTAGAACTAAATTGGCTTGGAATTCTCTCTAACTTACTTC
7641881 TATTGGTAGAACTAAA
1 TATTGGTAGAACTAAA
7641897 CCCAAGTATC
Statistics
Matches: 60, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
45 46 0.77
46 1 0.02
47 2 0.03
49 11 0.18
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.39
Consensus pattern (45 bp):
TATTGGTAGAACTAAATTGGCTTGGAATTCTCTCTAACTTACTTC
Done.