Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 250 of 322
Found at i:83050023 original size:44 final size:43
Alignment explanation
Indices: 83049846--83050423 Score: 410
Period size: 44 Copynumber: 13.1 Consensus size: 43
83049836 TCATTAAAGT
* * * *
83049846 AGATCTTGTCTTCATGTATTGGCGTGAAGCAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGAG-GAAGTAGATCGAAGATAGC
* * * * * * *
83049890 AGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAGGAT-GC
1 AGATCTTGTCTTCCTATATTG-GAGGAAGTAGATCGAAGATAGC
* * *
83049933 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAG-TAAGC
1 AGATCTTGTCTTCCTATATTGG-AG-GAAGTAGATCGAAGAT-AGC
* * * *
83049978 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGC
1 AGATCTTGTCTTCCTATATTGGAG-GAAGTAGATCGAAGATAGC
* * * *
83050022 AGATCCTATCTTTCTATATTGGTAGGAAGTGGATCGAAGAT-GC
1 AGATCTTGTCTTCCTATATTGG-AGGAAGTAGATCGAAGATAGC
* * * *
83050065 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGC
1 AGATCTTGTCTTCCTATATTGG-AG-GAAGTAGATCGAAGATAGC
* * *
83050110 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGAG-GAAGTAGATCGAAGATAGC
* * * * * *
83050154 AGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGAT-GC
1 AGATCTTGTCTTCCTATATTG-GAGGAAGTAGATCGAAGATAGC
* * * * *
83050197 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGT
1 AGATCTTGTCTTCCTATATTGG-AG-GAAGTAGATCGAAGATAGC
* * *
83050242 AGATCTTGTCTTCATGTATTGGCGGGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGG-AGGAAGTAGATCGAAGATAGC
* * * * * *
83050286 AGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGAT-GC
1 AGATCTTGTCTTCCTATATTG-GAGGAAGTAGATCGAAGATAGC
* * * * *
83050329 AGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATTGAAGATTGC
1 AGATCTTGTCTTCCTATATTGG-AG-GAAGTAGATCGAAGATAGC
* * * * *
83050374 AGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGC
1 AGATCTTGTCTTCCTATA-TTGG-AG-GAAGTAGATCGAAGATAGC
83050420 AGAT
1 AGAT
83050424 TTTACCTCCC
Statistics
Matches: 409, Mismatches: 107, Indels: 34
0.74 0.19 0.06
Matches are distributed among these distances:
43 82 0.20
44 219 0.54
45 85 0.21
46 23 0.06
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (43 bp):
AGATCTTGTCTTCCTATATTGGAGGAAGTAGATCGAAGATAGC
Found at i:83050083 original size:132 final size:132
Alignment explanation
Indices: 83049841--83050421 Score: 937
Period size: 132 Copynumber: 4.4 Consensus size: 132
83049831 TGAAGTCATT
* *
83049841 AAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGCAGATCGAAGATAGCAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
*
83049906 TATTGATAGGAAGTGGATCCAGGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
83049971 AG
131 AG
* * * *
83049973 TAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTTCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
* *
83050038 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
83050103 AG
131 AG
83050105 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
83050170 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
83050235 AG
131 AG
* *
83050237 AAAGTAGATCTTGTCTTCATGTATTGGCGGGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
* * * *
83050302 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATTGA
66 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
83050367 AG
131 AG
** * * * * * *
83050369 ATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAG
1 AAAGCAGATCTTGTCTTCATGTA-TTGGC-GTGAAGTAGATCGAAGATAGCAG
83050422 ATTTTACCTC
Statistics
Matches: 417, Mismatches: 30, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
132 393 0.94
133 5 0.01
134 19 0.05
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (132 bp):
AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
AG
Found at i:83050507 original size:134 final size:135
Alignment explanation
Indices: 83050359--83050663 Score: 531
Period size: 136 Copynumber: 2.3 Consensus size: 135
83050349 GGTGGTGAAG
*
83050359 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCAAAGATGGCAGAT
83050424 TTTACCTCCC-TGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCACTGTATCTGGCAG
66 TTTACCTCCCGTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCACTGTATCTGGCAG
83050488 TGGAA
131 TGGAA
* *
83050493 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGTGAAGCAGATCGAAGATGGCAGAT
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCAAAGATGGCAGAT
* *
83050558 TTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCA
66 TTTACCTCCC-GTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCACTGTATCTGGCA
83050623 GTGGAA
130 GTGGAA
* *
83050629 TAGATTGAAGATTGCAGATCCTGCCTTCCTATATT
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATT
83050664 GGTAGGAAGT
Statistics
Matches: 162, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
134 72 0.44
136 90 0.56
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (135 bp):
TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCAAAGATGGCAGAT
TTTACCTCCCGTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCACTGTATCTGGCAG
TGGAA
Found at i:83050570 original size:46 final size:46
Alignment explanation
Indices: 83050353--83050570 Score: 133
Period size: 46 Copynumber: 4.8 Consensus size: 46
83050343 CATACTGGTG
* * * * *
83050353 GTGAAGTAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCA
1 GTGAAGTAGATTGAAGATGGCAGATTTTACCTCCCTGTATTAGGCA
* * ** **
83050399 GCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTG-ACCA--CA
1 GTGAAGTAGATTGAAGATGGCAGATTTTACCTCCCTGTATTAGGCA
* * ** ** * * * *
83050442 GTGGAGTACATTGAAGCCGATA-ACTCTATCTCACTGTATCT-GGCA
1 GTGAAGTAGATTGAAGATGGCAGATTTTACCTCCCTGTAT-TAGGCA
* * * *
83050487 GTGGAA-TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCA
1 GT-GAAGTAGATTGAAGATGGCAGATTTTACCTCCCTGTATTAGGCA
* *
83050533 GTGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGT
1 GTGAAGTAGATTGAAGATGGCAGATTTTACCTCCCTGT
83050571 GACTACAGTG
Statistics
Matches: 117, Mismatches: 47, Indels: 16
0.65 0.26 0.09
Matches are distributed among these distances:
42 10 0.09
43 15 0.13
45 19 0.16
46 73 0.62
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.28
Consensus pattern (46 bp):
GTGAAGTAGATTGAAGATGGCAGATTTTACCTCCCTGTATTAGGCA
Found at i:83050636 original size:45 final size:45
Alignment explanation
Indices: 83050440--83050638 Score: 111
Period size: 45 Copynumber: 4.4 Consensus size: 45
83050430 TCCCTGACCA
* * * *
83050440 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCACTGTATCTGG
1 CAGTGGAATAGATTGAAGCCGATAACTCTACCTCCCTGTATCTGG
** * * * *
83050485 CAGTGGAATAGATTGAAGATTGCAGATCT-TGCCTTCCTGTAT-TAGG
1 CAGTGGAATAGATTGAAG-CCG-ATAACTCTACCTCCCTGTATCT-GG
* * ** ** * * *
83050531 CAGT-GAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGA-CT-A
1 CAGTGGAA-TAGATTGAAGCCGATA-ACTCTACCTCCCTGT-ATCTGG
* * *
83050576 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGG
1 CAGTGGAATAGATTGAAGCCGATAACTCTACCTCCCTGTATCTGG
83050621 CAGTGGAATAGATTGAAG
1 CAGTGGAATAGATTGAAG
83050639 ATTGCAGATC
Statistics
Matches: 109, Mismatches: 34, Indels: 22
0.66 0.21 0.13
Matches are distributed among these distances:
43 1 0.01
44 15 0.14
45 52 0.48
46 35 0.32
47 6 0.06
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.28
Consensus pattern (45 bp):
CAGTGGAATAGATTGAAGCCGATAACTCTACCTCCCTGTATCTGG
Found at i:83051177 original size:40 final size:40
Alignment explanation
Indices: 83050826--83051173 Score: 570
Period size: 40 Copynumber: 8.7 Consensus size: 40
83050816 AAGATTACAA
83050826 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTAAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTAAG
83050866 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTAAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTAAG
83050906 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTAAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTAAG
83050946 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTAAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTAAG
83050986 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTAAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTAAG
83051026 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTAAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTAAG
* *** **
83051066 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATAAAACCACAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTA-AG
* * * * *
83051107 ATCTTATTTCCCTAAGCAATAGTGAAGCAGATCGCATCAAG
1 -TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTAAG
*
83051148 TCTTATCTCCCTAAGTAGTAGTGGAG
1 TCTTATCTCCCTAAGCAGTAGTGGAG
83051174 CAGACTAAAA
Statistics
Matches: 289, Mismatches: 17, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
40 254 0.88
41 4 0.01
42 31 0.11
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29
Consensus pattern (40 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTAAG
Found at i:83051482 original size:37 final size:38
Alignment explanation
Indices: 83051419--83051493 Score: 100
Period size: 37 Copynumber: 2.0 Consensus size: 38
83051409 GCTGTAAAGG
* *
83051419 CCCAATTTTGGCCCAACTTAAACCAACCCTAAC-CAAA
1 CCCAATTTTGGCCCAACCTAAACCAACCCAAACACAAA
*
83051456 CCCAA-TTTGGCCCAACCTAATCCCAACCCAAACACAAA
1 CCCAATTTTGGCCCAACCTAA-ACCAACCCAAACACAAA
83051494 AAATAAATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
36 14 0.42
37 15 0.45
38 4 0.12
ACGTcount: A:0.39, C:0.40, G:0.05, T:0.16
Consensus pattern (38 bp):
CCCAATTTTGGCCCAACCTAAACCAACCCAAACACAAA
Found at i:83055089 original size:17 final size:18
Alignment explanation
Indices: 83055064--83055097 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
83055054 TTGAATAAAT
83055064 TATTAAAAAA-TAAAAAA
1 TATTAAAAAATTAAAAAA
*
83055081 TATTTAAAAATTAAAAA
1 TATTAAAAAATTAAAAA
83055098 CCGATTCAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (18 bp):
TATTAAAAAATTAAAAAA
Found at i:83064695 original size:26 final size:23
Alignment explanation
Indices: 83064644--83064697 Score: 63
Period size: 26 Copynumber: 2.2 Consensus size: 23
83064634 TGTTTATGCT
**
83064644 AATTACTTTAAATAGTAAAAGTA
1 AATTACTTTAAATAGTAAAACAA
83064667 AATTACTATTAAATAGAATAAAACAA
1 AATTACT-TTAAATAG--TAAAACAA
83064693 AATTA
1 AATTA
83064698 TTAGTATAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 7 0.27
24 8 0.31
26 11 0.42
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (23 bp):
AATTACTTTAAATAGTAAAACAA
Found at i:83066938 original size:15 final size:16
Alignment explanation
Indices: 83066902--83066940 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
83066892 ATTTATATTA
*
83066902 AGATAACAGATTATTC
1 AGATAACAGATTAGTC
83066918 AG-TAACAGATT-GTC
1 AGATAACAGATTAGTC
83066932 AGATAACAG
1 AGATAACAG
83066941 TTTCAATGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 4 0.19
15 15 0.71
16 2 0.10
ACGTcount: A:0.44, C:0.13, G:0.18, T:0.26
Consensus pattern (16 bp):
AGATAACAGATTAGTC
Found at i:83067898 original size:26 final size:26
Alignment explanation
Indices: 83067852--83067904 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
83067842 AAGGGAAAAT
83067852 GAAATAAGGAAAAGAAGAAAAATAAA
1 GAAATAAGGAAAAGAAGAAAAATAAA
*
83067878 GAAATAATGTAAAAGAA-AAAAATAAA
1 GAAATAA-GGAAAAGAAGAAAAATAAA
83067904 G
1 G
83067905 TACATGAATC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 17 0.68
27 8 0.32
ACGTcount: A:0.72, C:0.00, G:0.17, T:0.11
Consensus pattern (26 bp):
GAAATAAGGAAAAGAAGAAAAATAAA
Found at i:83074185 original size:18 final size:18
Alignment explanation
Indices: 83074150--83074189 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
83074140 GAAATATTTA
*
83074150 TTTTGATGTTTTTAATAT
1 TTTTGATGTTTATAATAT
83074168 TTTTGATGTATTATATATAT
1 TTTTGATGT-TTATA-ATAT
83074188 TT
1 TT
83074190 AAAAATTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 9 0.47
19 4 0.21
20 6 0.32
ACGTcount: A:0.25, C:0.00, G:0.10, T:0.65
Consensus pattern (18 bp):
TTTTGATGTTTATAATAT
Found at i:83075540 original size:10 final size:10
Alignment explanation
Indices: 83075525--83075555 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
83075515 TTCAACGATT
83075525 AAGAAAAAAA
1 AAGAAAAAAA
*
83075535 AAGAAAAGAA
1 AAGAAAAAAA
83075545 AAGAAAAAAA
1 AAGAAAAAAA
83075555 A
1 A
83075556 TGGAATGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (10 bp):
AAGAAAAAAA
Found at i:83077322 original size:20 final size:20
Alignment explanation
Indices: 83077282--83077319 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
83077272 CTTTCATAAC
*
83077282 AAAAATAATATTTTAACAAT
1 AAAAATAATATTTTAAAAAT
83077302 AAAAATAA-ATTTTAAAAA
1 AAAAATAATATTTTAAAAA
83077320 ATATTAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (20 bp):
AAAAATAATATTTTAAAAAT
Found at i:83077431 original size:20 final size:21
Alignment explanation
Indices: 83077392--83077432 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
83077382 AATTTTTCAT
83077392 TTTTAAATAATAACTAATTTA
1 TTTTAAATAATAACTAATTTA
83077413 TTTTAAATGAA-AA-TAATTTA
1 TTTTAAAT-AATAACTAATTTA
83077433 AAGAATTCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.37
21 10 0.53
22 2 0.11
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.46
Consensus pattern (21 bp):
TTTTAAATAATAACTAATTTA
Found at i:83082154 original size:29 final size:27
Alignment explanation
Indices: 83082122--83082204 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
83082112 TACAAATTGG
83082122 AAAAATTATTAAAAAT-TAACAAAAAAATT
1 AAAAATTATTAAAAATAT-A-AAAAAAA-T
* *
83082151 AAAATTTATTTAAAAATATAAAAATAAT
1 AAAAATTA-TTAAAAATATAAAAAAAAT
* * *
83082179 AAAAATTATTTAAATTATTAAAAAAA
1 AAAAATTATTAAAAATATAAAAAAAA
83082205 GTTGTAAAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
27 14 0.31
28 8 0.18
29 13 0.29
30 9 0.20
31 1 0.02
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.33
Consensus pattern (27 bp):
AAAAATTATTAAAAATATAAAAAAAAT
Found at i:83082224 original size:10 final size:9
Alignment explanation
Indices: 83082211--83082302 Score: 51
Period size: 9 Copynumber: 9.9 Consensus size: 9
83082201 AAAAGTTGTA
83082211 AAAAATCTTT
1 AAAAAT-TTT
*
83082221 AAAAATTTA
1 AAAAATTTT
83082230 AATAAATTGTT
1 AA-AAATT-TT
* *
83082241 AAAAACTAT
1 AAAAATTTT
*
83082250 AAAAATTGT
1 AAAAATTTT
*
83082259 -AAATTTTT
1 AAAAATTTT
* **
83082267 TAAAATGTAG
1 AAAAAT-TTT
*
83082277 AAAAATATT
1 AAAAATTTT
*
83082286 AAAAATTTA
1 AAAAATTTT
83082295 AAAAATTT
1 AAAAATTT
83082303 GTGAAAACTC
Statistics
Matches: 61, Mismatches: 17, Indels: 9
0.70 0.20 0.10
Matches are distributed among these distances:
8 6 0.10
9 31 0.51
10 21 0.34
11 3 0.05
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37
Consensus pattern (9 bp):
AAAAATTTT
Found at i:83082236 original size:20 final size:19
Alignment explanation
Indices: 83082209--83082258 Score: 50
Period size: 19 Copynumber: 2.6 Consensus size: 19
83082199 AAAAAAGTTG
83082209 TAAAAAATCT-TTAAAAATT
1 TAAAAAAT-TGTTAAAAATT
*
83082228 TAAATAAATTGTTAAAAA-C
1 TAAA-AAATTGTTAAAAATT
83082247 TATAAAAATTGT
1 TA-AAAAATTGT
83082259 AAATTTTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
19 14 0.52
20 13 0.48
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.36
Consensus pattern (19 bp):
TAAAAAATTGTTAAAAATT
Found at i:83082262 original size:30 final size:31
Alignment explanation
Indices: 83082196--83082262 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
83082186 ATTTAAATTA
* *
83082196 TTAAAAAAAGTTGTAAAAAATCTTTAAAAAT
1 TTAAATAAAGTTGTAAAAAATCTATAAAAAT
*
83082227 TTAAATAAA-TTGTTAAAAA-CTATAAAAAT
1 TTAAATAAAGTTGTAAAAAATCTATAAAAAT
83082256 TGTAAAT
1 T-TAAAT
83082263 TTTTTAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 10 0.31
30 14 0.44
31 8 0.25
ACGTcount: A:0.57, C:0.03, G:0.06, T:0.34
Consensus pattern (31 bp):
TTAAATAAAGTTGTAAAAAATCTATAAAAAT
Found at i:83082691 original size:26 final size:24
Alignment explanation
Indices: 83082660--83082709 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
83082650 AAATAAAAAA
*
83082660 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
83082686 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
83082710 TAAAAAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:83082728 original size:20 final size:21
Alignment explanation
Indices: 83082650--83082723 Score: 64
Period size: 21 Copynumber: 3.4 Consensus size: 21
83082640 TTATTTCATT
83082650 AAAT-AAAA-AAAT-TTAAAA
1 AAATAAAAACAAATATTAAAA
*
83082668 ATATAATAAATCAAATATATTTAAAA
1 AAATAA-AAA-C-AA-ATA-TTAAAA
*
83082694 ACATAAAAACAAATATTAAAA
1 AAATAAAAACAAATATTAAAA
83082715 AAATAAAAA
1 AAATAAAAA
83082724 TAATACTAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 13
0.74 0.05 0.21
Matches are distributed among these distances:
18 3 0.07
19 1 0.02
20 3 0.07
21 14 0.31
22 3 0.07
23 4 0.09
24 3 0.07
25 3 0.07
26 11 0.24
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.24
Consensus pattern (21 bp):
AAATAAAAACAAATATTAAAA
Found at i:83082733 original size:20 final size:21
Alignment explanation
Indices: 83082689--83082734 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
83082679 CAAATATATT
* *
83082689 TAAAAACATAAAAACAAATAT
1 TAAAAAAATAAAAACAAATAC
*
83082710 TAAAAAAATAAAAA-TAATAC
1 TAAAAAAATAAAAACAAATAC
83082730 TAAAA
1 TAAAA
83082735 CAATTCTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.74, C:0.07, G:0.00, T:0.20
Consensus pattern (21 bp):
TAAAAAAATAAAAACAAATAC
Found at i:83084160 original size:16 final size:18
Alignment explanation
Indices: 83084141--83084173 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
83084131 TTAACTTCTT
83084141 TTTTCTT-TA-TTCTCCG
1 TTTTCTTCTATTTCTCCG
83084157 TTTTCTTCTATTTCTCC
1 TTTTCTTCTATTTCTCC
83084174 CTCTGTTCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 2 0.13
18 6 0.40
ACGTcount: A:0.06, C:0.27, G:0.03, T:0.64
Consensus pattern (18 bp):
TTTTCTTCTATTTCTCCG
Found at i:83088213 original size:20 final size:22
Alignment explanation
Indices: 83088188--83088227 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
83088178 TTAATTTCTA
83088188 GTAAA-GAAAAG-TGAATAATT
1 GTAAAGGAAAAGATGAATAATT
83088208 GTAAAGGAAAAGATGAATAA
1 GTAAAGGAAAAGATGAATAA
83088228 GAAAAAGGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
21 6 0.33
22 7 0.39
ACGTcount: A:0.57, C:0.00, G:0.23, T:0.20
Consensus pattern (22 bp):
GTAAAGGAAAAGATGAATAATT
Found at i:83093405 original size:20 final size:19
Alignment explanation
Indices: 83093332--83093447 Score: 52
Period size: 21 Copynumber: 5.6 Consensus size: 19
83093322 GAGATATTAG
*
83093332 CTCTTACGAGCTTCTGTTTAA
1 CTCTTATGAG-TTCTG-TTAA
* * *
83093353 CTCATATGAGTTTTCGTTCAG
1 CTCTTATGAGTTCT-GTT-AA
* *
83093374 CTCTTTTAAGTTCTGTTAA
1 CTCTTATGAGTTCTGTTAA
* *
83093393 CCTCTTATGAGTTTCTATTCAG
1 -CTCTTATGAG-TTCTGTT-AA
* *
83093415 TTCTTATGAGCTTCCGTTTAA
1 CTCTTATGAG-TTCTG-TTAA
*
83093436 CTCATATGAGTT
1 CTCTTATGAGTT
83093448 TTCGTTCAGC
Statistics
Matches: 69, Mismatches: 20, Indels: 13
0.68 0.20 0.13
Matches are distributed among these distances:
19 1 0.01
20 18 0.26
21 47 0.68
22 3 0.04
ACGTcount: A:0.20, C:0.20, G:0.15, T:0.46
Consensus pattern (19 bp):
CTCTTATGAGTTCTGTTAA
Found at i:83093447 original size:42 final size:42
Alignment explanation
Indices: 83093330--83093471 Score: 173
Period size: 42 Copynumber: 3.4 Consensus size: 42
83093320 TTGAGATATT
83093330 AGCTCTTACGAGCTTCTGTTTAACTCATATGAGTTTTCGTTC
1 AGCTCTTACGAGCTTCTGTTTAACTCATATGAGTTTTCGTTC
*** * *
83093372 AGCTCTTTTAAG-TTCTG-TTAACCTCTTATGAG-TTTCTATTC
1 AGCTCTTACGAGCTTCTGTTTAA-CTCATATGAGTTTTC-GTTC
* * *
83093413 AGTTCTTATGAGCTTCCGTTTAACTCATATGAGTTTTCGTTC
1 AGCTCTTACGAGCTTCTGTTTAACTCATATGAGTTTTCGTTC
83093455 AGCTCTTACGAGCTTCT
1 AGCTCTTACGAGCTTCT
83093472 ATTCAACCCT
Statistics
Matches: 81, Mismatches: 14, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
40 8 0.10
41 26 0.32
42 39 0.48
43 8 0.10
ACGTcount: A:0.19, C:0.21, G:0.15, T:0.44
Consensus pattern (42 bp):
AGCTCTTACGAGCTTCTGTTTAACTCATATGAGTTTTCGTTC
Found at i:83097871 original size:30 final size:30
Alignment explanation
Indices: 83097807--83097875 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
83097797 TAAAGATAAC
* *
83097807 AAGAAAACC-GAATAAAGAAATCCAAGATT
1 AAGAAACCCAGAATAAAGAAATCCAAGATA
*
83097836 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAACCCAGAATAAAGAAATCCAAG-ATA
83097866 AAGAAACCCA
1 AAGAAACCCA
83097876 AGATAAGATA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 9 0.26
30 25 0.74
ACGTcount: A:0.58, C:0.17, G:0.14, T:0.10
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATA
Found at i:83097881 original size:15 final size:15
Alignment explanation
Indices: 83097807--83097875 Score: 70
Period size: 15 Copynumber: 4.7 Consensus size: 15
83097797 TAAAGATAAC
*
83097807 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
* *
83097821 AAGAAATCCA-AGATT
1 AAGAAACCCAGA-ATA
*
83097836 GAGAAACCCAGAATA
1 AAGAAACCCAGAATA
*
83097851 AAGAAATCCAGAATA
1 AAGAAACCCAGAATA
83097866 AAGAAACCCA
1 AAGAAACCCA
83097876 AGATAAGATA
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
14 9 0.20
15 34 0.77
16 1 0.02
ACGTcount: A:0.58, C:0.17, G:0.14, T:0.10
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:83119194 original size:17 final size:17
Alignment explanation
Indices: 83119172--83119206 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
83119162 TAAATTAAAG
*
83119172 AAAGGAATTAATAGGAA
1 AAAGGAATTAATAAGAA
83119189 AAAGGAATTAATAAGAA
1 AAAGGAATTAATAAGAA
83119206 A
1 A
83119207 GGGAGAGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.63, C:0.00, G:0.20, T:0.17
Consensus pattern (17 bp):
AAAGGAATTAATAAGAA
Found at i:83124884 original size:120 final size:120
Alignment explanation
Indices: 83124670--83124915 Score: 474
Period size: 120 Copynumber: 2.0 Consensus size: 120
83124660 TTTAATTTTT
83124670 ATTGTATATATTTAATGTGTGATAGTGTGTGTATGAAAATTTAATGTTTTAATTTAGTCTTAGGA
1 ATTGTATATATTTAATGTGTGATAGTGTGTGTATGAAAATTTAATGTTTTAATTTAGTCTTAGGA
*
83124735 ATGTGAATTTTCTTGAAAGGACTTAGTTGAGAAACTTAGAAAAGATGATAGGTAA
66 ATATGAATTTTCTTGAAAGGACTTAGTTGAGAAACTTAGAAAAGATGATAGGTAA
*
83124790 TTTGTATATATTTAATGTGTGATAGTGTGTGTATGAAAATTTAATGTTTTAATTTAGTCTTAGGA
1 ATTGTATATATTTAATGTGTGATAGTGTGTGTATGAAAATTTAATGTTTTAATTTAGTCTTAGGA
83124855 ATATGAATTTTCTTGAAAGGACTTAGTTGAGAAACTTAGAAAAGATGATAGGTAA
66 ATATGAATTTTCTTGAAAGGACTTAGTTGAGAAACTTAGAAAAGATGATAGGTAA
83124910 ATTGTA
1 ATTGTA
83124916 AGGATCAAAT
Statistics
Matches: 123, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 123 1.00
ACGTcount: A:0.35, C:0.03, G:0.21, T:0.41
Consensus pattern (120 bp):
ATTGTATATATTTAATGTGTGATAGTGTGTGTATGAAAATTTAATGTTTTAATTTAGTCTTAGGA
ATATGAATTTTCTTGAAAGGACTTAGTTGAGAAACTTAGAAAAGATGATAGGTAA
Found at i:83125241 original size:64 final size:61
Alignment explanation
Indices: 83125136--83125260 Score: 187
Period size: 64 Copynumber: 2.0 Consensus size: 61
83125126 CTTCTTCCTC
*
83125136 TTGCAAATGCCGTAAGCTAGGGAAAGGAGGAAATTTTCTAAGACATTCGACCATCCTAAGG
1 TTGCAAATGCCGTAAGCTAGGGAAAGGAGGAAATTTTCTAAGACATTAGACCATCCTAAGG
* * *
83125197 TTGCAAATGCCGTAAGCTAAGGAAGGAAGGAGGAAATTTTCTAAGACATTAGGCCATCTTAAGG
1 TTGCAAATGCCGTAAGCT-AGG--GAAAGGAGGAAATTTTCTAAGACATTAGACCATCCTAAGG
83125261 GGTTGATTAA
Statistics
Matches: 57, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
61 18 0.32
62 3 0.05
64 36 0.63
ACGTcount: A:0.35, C:0.16, G:0.26, T:0.23
Consensus pattern (61 bp):
TTGCAAATGCCGTAAGCTAGGGAAAGGAGGAAATTTTCTAAGACATTAGACCATCCTAAGG
Found at i:83129426 original size:82 final size:82
Alignment explanation
Indices: 83129289--83129454 Score: 323
Period size: 82 Copynumber: 2.0 Consensus size: 82
83129279 TGTATATAAT
*
83129289 AATAATTCCTAATCAAGTATTCAAATGGCACCGTATAAAGCTTTGTATGGTCAGAGATGCCGATC
1 AATAATTACTAATCAAGTATTCAAATGGCACCGTATAAAGCTTTGTATGGTCAGAGATGCCGATC
83129354 ATTAGTGTGTTGGATGA
66 ATTAGTGTGTTGGATGA
83129371 AATAATTACTAATCAAGTATTCAAATGGCACCGTATAAAGCTTTGTATGGTCAGAGATGCCGATC
1 AATAATTACTAATCAAGTATTCAAATGGCACCGTATAAAGCTTTGTATGGTCAGAGATGCCGATC
83129436 ATTAGTGTGTTGGATGA
66 ATTAGTGTGTTGGATGA
83129453 AA
1 AA
83129455 CTGAATGAAA
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 83 1.00
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.31
Consensus pattern (82 bp):
AATAATTACTAATCAAGTATTCAAATGGCACCGTATAAAGCTTTGTATGGTCAGAGATGCCGATC
ATTAGTGTGTTGGATGA
Found at i:83135123 original size:13 final size:13
Alignment explanation
Indices: 83135107--83135136 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
83135097 CTGTGTCCTT
83135107 CACACGGCCCAGA
1 CACACGGCCCAGA
*
83135120 CACACGGCCGAGA
1 CACACGGCCCAGA
83135133 CACA
1 CACA
83135137 TGGCTGTGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.43, G:0.23, T:0.00
Consensus pattern (13 bp):
CACACGGCCCAGA
Found at i:83135971 original size:20 final size:20
Alignment explanation
Indices: 83135943--83135986 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
83135933 TACCAACTTG
*
83135943 CAACTTACCATAATCTTTCA
1 CAACATACCATAATCTTTCA
*
83135963 CAACATACCATAGTCTTTCA
1 CAACATACCATAATCTTTCA
83135983 CAAC
1 CAAC
83135987 TTAAACATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.32, G:0.02, T:0.30
Consensus pattern (20 bp):
CAACATACCATAATCTTTCA
Found at i:83136152 original size:43 final size:42
Alignment explanation
Indices: 83136105--83136185 Score: 119
Period size: 42 Copynumber: 1.9 Consensus size: 42
83136095 TACATGGGAC
83136105 CTCATATCGACGCCAATAGCCCA-ACTATGGTCTTACACGAAGT
1 CTCATATCGACGCC-ATAGCCCAGA-TATGGTCTTACACGAAGT
* *
83136148 CTCATATCGATGCCATATCCCAGATATGGTCTTACACG
1 CTCATATCGACGCCATAGCCCAGATATGGTCTTACACG
83136186 TAATCTTAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
42 21 0.60
43 14 0.40
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (42 bp):
CTCATATCGACGCCATAGCCCAGATATGGTCTTACACGAAGT
Found at i:83136184 original size:42 final size:42
Alignment explanation
Indices: 83136075--83136185 Score: 127
Period size: 43 Copynumber: 2.6 Consensus size: 42
83136065 CATACCAATT
* * *
83136075 CCATATCCCAGCTATGGTCTTACATGGGACCTCATATCGACG
1 CCATATCCCAGATATGGTCTTACACGAGACCTCATATCGACG
* * *
83136117 CCAATAGCCCA-ACTATGGTCTTACACGA-AGTCTCATATCGATG
1 CC-ATATCCCAGA-TATGGTCTTACACGAGA-CCTCATATCGACG
83136160 CCATATCCCAGATATGGTCTTACACG
1 CCATATCCCAGATATGGTCTTACACG
83136186 TAATCTTAAT
Statistics
Matches: 58, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
42 24 0.41
43 34 0.59
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (42 bp):
CCATATCCCAGATATGGTCTTACACGAGACCTCATATCGACG
Found at i:83145174 original size:28 final size:28
Alignment explanation
Indices: 83145142--83145268 Score: 164
Period size: 29 Copynumber: 4.5 Consensus size: 28
83145132 ATAGTAAGTC
83145142 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGTTATATAATCAAACT
*
83145170 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTG-TTATATAATCAAACT
*
83145199 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGTTATATAATCAAACT
* * ** * *
83145227 TGCACACTTAGTGATATGCAATTTAAACC
1 CGCACACTTAGTGTTATATAA-TCAAACT
83145256 CGCACACTTAGTG
1 CGCACACTTAGTG
83145269 CCAATCTCAT
Statistics
Matches: 87, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
28 43 0.49
29 44 0.51
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGTTATATAATCAAACT
Found at i:83145200 original size:29 final size:29
Alignment explanation
Indices: 83145142--83145239 Score: 164
Period size: 28 Copynumber: 3.4 Consensus size: 29
83145132 ATAGTAAGTC
83145142 CGCACACTTAGTG-TTATATAATCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
*
83145170 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
83145199 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
*
83145227 TGCACACTTAGTG
1 CGCACACTTAGTG
83145240 ATATGCAATT
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
28 38 0.58
29 28 0.42
ACGTcount: A:0.34, C:0.24, G:0.12, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCTTATATAATCAAACT
Found at i:83145260 original size:57 final size:57
Alignment explanation
Indices: 83145141--83145269 Score: 179
Period size: 57 Copynumber: 2.3 Consensus size: 57
83145131 TATAGTAAGT
* *
83145141 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGATTACATAATCAAAC
* * * * *
83145198 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGATATGCA-ATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGAT-TACATAATCAAAC
83145255 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
83145270 CAATCTCATG
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
57 60 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGATTACATAATCAAAC
Found at i:83152497 original size:50 final size:49
Alignment explanation
Indices: 83152418--83152693 Score: 295
Period size: 49 Copynumber: 5.6 Consensus size: 49
83152408 ATTGTGAATA
* *
83152418 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTT-GGT
* * * ** * *
83152468 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCCTACTCAATGACT-TCGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-C-A-GACTGTTGGT
* *
83152519 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGGTGAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GT-TGGT
* * *** *
83152569 CACGTGGGTAGTACTAAGTGCAGGCTACTATGTGTATTGGATTGTTGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGT
** *
83152618 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATTGTTGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGT
*
83152667 CACATGTGTAGTACTAAGTGCAGGCTA
1 CACGTGTGTAGTACTAAGTGCAGGCTA
83152694 TTATGCGTAT
Statistics
Matches: 193, Mismatches: 26, Indels: 15
0.82 0.11 0.06
Matches are distributed among these distances:
47 1 0.01
48 2 0.01
49 77 0.40
50 74 0.38
51 34 0.18
52 2 0.01
53 3 0.02
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (49 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGT
Found at i:83152593 original size:101 final size:96
Alignment explanation
Indices: 83152418--83152699 Score: 332
Period size: 101 Copynumber: 2.8 Consensus size: 96
83152408 ATTGTGAATA
* * *
83152418 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CAGA-TG-TAGGTCACATGTGTAGTACT
83152483 AAGTGCAGGCTACTATGCCTACT-CAATGACTTCGAT
63 AAGTGCAGGCTACTATGCCTACTGCAATG--TT-GAT
* *
83152519 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACGTGGGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CAGAT-GT-AGGTCACATGTGTAGTACT
** * * * *
83152584 AAGTGCAGGCTACTATGTGTATTGGATTGTTGGT
63 AAGTGCAGGCTACTATGCCTACTGCAATGTTGAT
* *
83152618 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATTGTTGGTCACATGTGTAGTACTA
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-AGA-TGTAGGTCACATGTGTAGTACTA
*
83152683 AGTGCAGGCTATTATGC
64 AGTGCAGGCTACTATGC
83152700 GTATCAGATA
Statistics
Matches: 158, Mismatches: 18, Indels: 13
0.84 0.10 0.07
Matches are distributed among these distances:
98 33 0.21
99 42 0.27
100 5 0.03
101 75 0.47
102 3 0.02
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.31
Consensus pattern (96 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACAGATGTAGGTCACATGTGTAGTACTAAG
TGCAGGCTACTATGCCTACTGCAATGTTGAT
Found at i:83152638 original size:49 final size:49
Alignment explanation
Indices: 83152418--83152693 Score: 306
Period size: 50 Copynumber: 5.6 Consensus size: 49
83152408 ATTGTGAATA
* * * *
83152418 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGTT-GGT
* * * ** *
83152468 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCCTACTCA-A-TGACTTCGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGATTG--TT-GGT
* *
83152519 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATGGTGAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGATTGT-TGGT
* * * *
83152569 CACGTGGGTAGTACTAAGTGCAGGCTACTATGTGTATTGGATTGTTGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGTTGGT
*
83152618 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATTGTTGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGTTGGT
*
83152667 CACATGTGTAGTACTAAGTGCAGGCTA
1 CACGTGTGTAGTACTAAGTGCAGGCTA
83152694 TTATGCGTAT
Statistics
Matches: 193, Mismatches: 26, Indels: 15
0.82 0.11 0.06
Matches are distributed among these distances:
49 77 0.40
50 78 0.40
51 37 0.19
52 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (49 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGTTGGT
Found at i:83156763 original size:46 final size:46
Alignment explanation
Indices: 83156640--83156769 Score: 154
Period size: 46 Copynumber: 2.8 Consensus size: 46
83156630 TGTAACCCGC
* *
83156640 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCCTAGTT
* *** * * *
83156686 ACATCTCTCGAACTCGGACTCAACTCTACGAGTTTGGACG-CTCGTAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACGCCTAGT-T
83156733 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
83156770 TGCCCAAATA
Statistics
Matches: 67, Mismatches: 15, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
46 35 0.52
47 32 0.48
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCCTAGTT
Found at i:83156788 original size:46 final size:45
Alignment explanation
Indices: 83156645--83156788 Score: 114
Period size: 46 Copynumber: 3.1 Consensus size: 45
83156635 CCCGCCCATA
* * * *
83156645 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ATATCCC
* * * * * *
83156693 --TCGAACTCGGACTCAACTCTACGAGTTTGGACGCTC-GTATCCATA
1 AGT-GAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATATCC--C
83156738 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AATATCCC
83156784 AGTGA
1 AGTGA
83156789 CATGTCACTT
Statistics
Matches: 73, Mismatches: 16, Indels: 16
0.70 0.15 0.15
Matches are distributed among these distances:
43 3 0.04
46 36 0.49
47 29 0.40
48 5 0.07
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATATCCC
Found at i:83162274 original size:41 final size:42
Alignment explanation
Indices: 83162175--83162281 Score: 112
Period size: 41 Copynumber: 2.5 Consensus size: 42
83162165 AGCCTTTGAG
* *
83162175 CCTAGCAGGCTATAATGCCGGTGAAATGATAACGGGCTTTGAG
1 CCTAGCAGGCTA-AATGCCGGTGAAATGATAACGGGCTTTAAA
* * *
83162218 CCTAGCAGGCGAAATGCCGGTG-GATGA-ATTCGGG-TTTAAAA
1 CCTAGCAGGCTAAATGCCGGTGAAATGATA-ACGGGCTTT-AAA
*
83162259 CCTAGCAGGCTAAATGCTGGTGA
1 CCTAGCAGGCTAAATGCCGGTGA
83162282 TTTGATAAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
40 4 0.07
41 29 0.54
42 10 0.19
43 11 0.20
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.22
Consensus pattern (42 bp):
CCTAGCAGGCTAAATGCCGGTGAAATGATAACGGGCTTTAAA
Found at i:83162275 original size:137 final size:137
Alignment explanation
Indices: 83162029--83162302 Score: 530
Period size: 137 Copynumber: 2.0 Consensus size: 137
83162019 TACTAATCGG
*
83162029 GCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAAATGATATCGGGCTTTGAGCCTAGCAGGCGAA
1 GCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAAATGATAACGGGCTTTGAGCCTAGCAGGCGAA
83162094 ATGCCGGTGGATGAATTCGGGTTTAAAACCTAGCAGGCTAAATGCTGGTGATTTGATAAAAGTCT
66 ATGCCGGTGGATGAATTCGGGTTTAAAACCTAGCAGGCTAAATGCTGGTGATTTGATAAAAGTCT
83162159 AAGACTA
131 AAGACTA
*
83162166 GCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGATAACGGGCTTTGAGCCTAGCAGGCGAA
1 GCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAAATGATAACGGGCTTTGAGCCTAGCAGGCGAA
83162231 ATGCCGGTGGATGAATTCGGGTTTAAAACCTAGCAGGCTAAATGCTGGTGATTTGATAAAAGTCT
66 ATGCCGGTGGATGAATTCGGGTTTAAAACCTAGCAGGCTAAATGCTGGTGATTTGATAAAAGTCT
83162296 AAGACTA
131 AAGACTA
83162303 AGATACCTCG
Statistics
Matches: 135, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 135 1.00
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (137 bp):
GCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAAATGATAACGGGCTTTGAGCCTAGCAGGCGAA
ATGCCGGTGGATGAATTCGGGTTTAAAACCTAGCAGGCTAAATGCTGGTGATTTGATAAAAGTCT
AAGACTA
Found at i:83165947 original size:44 final size:43
Alignment explanation
Indices: 83165882--83166007 Score: 191
Period size: 44 Copynumber: 2.9 Consensus size: 43
83165872 ATAGGATTCT
83165882 GATATGTGATT-CGTGTAAGACCACGTCTGGGATGTTGGCATC
1 GATATGTGATTACGTGTAAGACCACGTCTGGGATGTTGGCATC
* *
83165924 GATTTGTGATTTACGTGTAAGACCACGTCTGAGATGTTGGCATC
1 GATATGTGA-TTACGTGTAAGACCACGTCTGGGATGTTGGCATC
* * *
83165968 GATATGTGATTACATGTAAGACCACGTCTAGGACGTTGGC
1 GATATGTGATTACGTGTAAGACCACGTCTGGGATGTTGGC
83166008 GTTGTACGAG
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
42 8 0.11
43 29 0.39
44 38 0.51
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (43 bp):
GATATGTGATTACGTGTAAGACCACGTCTGGGATGTTGGCATC
Found at i:83167416 original size:49 final size:49
Alignment explanation
Indices: 83167297--83167768 Score: 674
Period size: 49 Copynumber: 9.6 Consensus size: 49
83167287 ATTGTGAATA
** * *
83167297 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTGGATTGT-TGGT
* *
83167347 CACGTGCGTAGTACTAAGTGCAGGCTACTATGTGTATTGGATTGTTGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTGGATTGTTGGT
** * *
83167396 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTGGATTGT-TGGT
* *
83167446 CACGTGCGTAGTACTAAGTGCAGGCTACTATGTGTATTGGATTGTTGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTGGATTGTTGGT
** * *
83167495 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTGGATTGT-TGGT
* *
83167545 CACGTGCGTAGTACTAAGTGCAGGCTACTATGTGTATTGGATTGTTGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTGGATTGTTGGT
** * *
83167594 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTGGATTGT-TGGT
* *
83167644 CACGTGCGTAGTACTAAGTGCAGGCTACTATGTGTATTGGATTGTTGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTGGATTGTTGGT
*
83167693 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATTGTTGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTGGATTGTTGGT
*
83167742 CACATGTGTAGTACTAAGTGCAGGCTA
1 CACGTGTGTAGTACTAAGTGCAGGCTA
83167769 TTATGCGTAT
Statistics
Matches: 373, Mismatches: 46, Indels: 7
0.88 0.11 0.02
Matches are distributed among these distances:
49 204 0.55
50 169 0.45
ACGTcount: A:0.22, C:0.15, G:0.31, T:0.31
Consensus pattern (49 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTGGATTGTTGGT
Found at i:83167468 original size:99 final size:99
Alignment explanation
Indices: 83167297--83167778 Score: 878
Period size: 99 Copynumber: 4.9 Consensus size: 99
83167287 ATTGTGAATA
83167297 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACGTGCGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACGTGCGTAGTACT
83167362 AAGTGCAGGCTACTATGTGTATTGGATTGTTGGT
66 AAGTGCAGGCTACTATGTGTATTGGATTGTTGGT
83167396 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACGTGCGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACGTGCGTAGTACT
83167461 AAGTGCAGGCTACTATGTGTATTGGATTGTTGGT
66 AAGTGCAGGCTACTATGTGTATTGGATTGTTGGT
83167495 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACGTGCGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACGTGCGTAGTACT
83167560 AAGTGCAGGCTACTATGTGTATTGGATTGTTGGT
66 AAGTGCAGGCTACTATGTGTATTGGATTGTTGGT
83167594 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACGTGCGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACGTGCGTAGTACT
83167659 AAGTGCAGGCTACTATGTGTATTGGATTGTTGGT
66 AAGTGCAGGCTACTATGTGTATTGGATTGTTGGT
* * * * *
83167693 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CTGGATTGT-TGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-AGATGGTGAGGTCACGTGCGTAGTAC
* *
83167756 TAAGTGCAGGCTATTATGCGTAT
65 TAAGTGCAGGCTACTATGTGTAT
83167779 CAGATAGCTT
Statistics
Matches: 375, Mismatches: 7, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
98 37 0.10
99 338 0.90
ACGTcount: A:0.22, C:0.15, G:0.31, T:0.32
Consensus pattern (99 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACGTGCGTAGTACT
AAGTGCAGGCTACTATGTGTATTGGATTGTTGGT
Found at i:83167900 original size:27 final size:26
Alignment explanation
Indices: 83167870--83167921 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 26
83167860 GGGAAAATCG
83167870 ATAAAGTGGTAATATGTG-AAAGTTATA
1 ATAAAGTGG--ATATGTGCAAAGTTATA
* *
83167897 ATAAGGTGGATATGTGCAAATTTAT
1 ATAAAGTGGATATGTGCAAAGTTAT
83167922 GTTTATGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 7 0.32
26 7 0.32
27 8 0.36
ACGTcount: A:0.40, C:0.02, G:0.23, T:0.35
Consensus pattern (26 bp):
ATAAAGTGGATATGTGCAAAGTTATA
Found at i:83169013 original size:51 final size:51
Alignment explanation
Indices: 83168937--83169038 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
83168927 GTAGGATTAG
83168937 GTAAATGTGTAAATTCATGTTTTCAGAACATGGGTAAGGGGTGTTATAGAC
1 GTAAATGTGTAAATTCATGTTTTCAGAACATGGGTAAGGGGTGTTATAGAC
83168988 GTAAATGTGTAAATTCATGTTTTCAGAACATGGGTAAGGGGTGTTATAGAC
1 GTAAATGTGTAAATTCATGTTTTCAGAACATGGGTAAGGGGTGTTATAGAC
83169039 TATCCGAGTA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.31, C:0.08, G:0.27, T:0.33
Consensus pattern (51 bp):
GTAAATGTGTAAATTCATGTTTTCAGAACATGGGTAAGGGGTGTTATAGAC
Found at i:83175350 original size:49 final size:49
Alignment explanation
Indices: 83175288--83175456 Score: 197
Period size: 49 Copynumber: 3.6 Consensus size: 49
83175278 CACATCAAGT
* *
83175288 CGATG-CATGTCCCAGATAGGTCTTACATTGACTTTCATATAACGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACATTGACTCTCATATAACGAGGC
* * * * *
83175336 CGATGCCATGTCCCAGACAGGTCTTACATTGGCTCTCATCTATCGATGT
1 CGATGCCATGTCCCAGACAGGTCTTACATTGACTCTCATATAACGAGGC
* * *
83175385 CGATGCCATGTCCCAGACAGGTCTTACATTGA----CACATAAC-AAGT
1 CGATGCCATGTCCCAGACAGGTCTTACATTGACTCTCATATAACGAGGC
*
83175429 TGATGCCATGTCCCAGACAGGTCTTACA
1 CGATGCCATGTCCCAGACAGGTCTTACA
83175457 CTAGCTTGTA
Statistics
Matches: 107, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
44 30 0.28
45 5 0.05
48 5 0.05
49 67 0.63
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACATTGACTCTCATATAACGAGGC
Found at i:83175449 original size:44 final size:45
Alignment explanation
Indices: 83175241--83175456 Score: 186
Period size: 49 Copynumber: 4.6 Consensus size: 45
83175231 GATAAGACGC
* * * * *
83175241 CGATGCCATATCCCAGACATGGTCTTACACTGCCTAACACATC-AAGT
1 CGATGCCATGTCCCAGACA-GGTCTTACATTGAC--ACATAACGAAGT
* * * *
83175288 CGATG-CATGTCCCAGATAGGTCTTACATTGACTTTCATATAACGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACATTGA----CACATAACGAAGT
* * * *
83175336 CGATGCCATGTCCCAGACAGGTCTTACATTGGCTCTCATCTATCGATGT
1 CGATGCCATGTCCCAGACAGGTCTTACATT-G-ACACA--TAACGAAGT
83175385 CGATGCCATGTCCCAGACAGGTCTTACATTGACACATAAC-AAGT
1 CGATGCCATGTCCCAGACAGGTCTTACATTGACACATAACGAAGT
*
83175429 TGATGCCATGTCCCAGACAGGTCTTACA
1 CGATGCCATGTCCCAGACAGGTCTTACA
83175457 CTAGCTTGTA
Statistics
Matches: 138, Mismatches: 21, Indels: 23
0.76 0.12 0.13
Matches are distributed among these distances:
44 30 0.22
45 14 0.10
46 11 0.08
47 14 0.10
48 8 0.06
49 60 0.43
50 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (45 bp):
CGATGCCATGTCCCAGACAGGTCTTACATTGACACATAACGAAGT
Found at i:83175455 original size:93 final size:91
Alignment explanation
Indices: 83175239--83175458 Score: 255
Period size: 93 Copynumber: 2.4 Consensus size: 91
83175229 GGGATAAGAC
*
83175239 GCCGATGCCATATCCCAGACATGGTCTTACACTGCCTAACACATCAAGTCGATGCATGTCCCAGA
1 GCCGATGCCATGTCCCAGACA-GGTCTTACACTGCCTAACACATCAAGTCGATGCATGTCCCAGA
* * *
83175304 TAGGTCTTACATTGACTTTCATATAACGAG
65 CAGGTCTTACATTGA---TCACATAACGAA
* * ** *
83175334 GCCGATGCCATGTCCCAGACAGGTCTTACATTGGCTCTCATCTATCGATGTCGATGCCATGTCCC
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGCCTAACA-C-ATC-AAGTCGATG-CATGTCCC
83175399 AGACAGGTCTTACATTGA-CACATAAC-AA
62 AGACAGGTCTTACATTGATCACATAACGAA
**
83175427 GTTGATGCCATGTCCCAGACAGGTCTTACACT
1 GCCGATGCCATGTCCCAGACAGGTCTTACACT
83175459 AGCTTGTATA
Statistics
Matches: 109, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
93 30 0.28
94 22 0.20
95 21 0.19
96 3 0.03
97 8 0.07
98 25 0.23
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (91 bp):
GCCGATGCCATGTCCCAGACAGGTCTTACACTGCCTAACACATCAAGTCGATGCATGTCCCAGAC
AGGTCTTACATTGATCACATAACGAA
Found at i:83181620 original size:42 final size:41
Alignment explanation
Indices: 83181573--83181686 Score: 115
Period size: 43 Copynumber: 2.7 Consensus size: 41
83181563 TACTATGCCA
* *
83181573 ATGCCATATCCTAGATATGGTCTTACATG-GGACCTCATATTG
1 ATGCCATATCCTAGATATGGTCTTACACGAGGA--TCATATCG
* * *
83181615 ATGCCAATAGCCTAGCTATGGTCTTACACGAAGTATCATATCG
1 ATGCC-ATATCCTAGATATGGTCTTACACG-AGGATCATATCG
*
83181658 ATACCATAT-CTCAGATATGGTCTTACACG
1 ATGCCATATCCT-AGATATGGTCTTACACG
83181687 TAATCTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
41 2 0.03
42 24 0.40
43 32 0.53
45 2 0.03
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.31
Consensus pattern (41 bp):
ATGCCATATCCTAGATATGGTCTTACACGAGGATCATATCG
Found at i:83182336 original size:7 final size:7
Alignment explanation
Indices: 83182324--83182351 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
83182314 TAAAAACATG
83182324 AACCCTA
1 AACCCTA
83182331 AACCCTA
1 AACCCTA
83182338 AACCCTA
1 AACCCTA
83182345 AACCCTA
1 AACCCTA
83182352 CTTCAAAACG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.43, G:0.00, T:0.14
Consensus pattern (7 bp):
AACCCTA
Found at i:83185900 original size:40 final size:40
Alignment explanation
Indices: 83185804--83185997 Score: 241
Period size: 40 Copynumber: 4.9 Consensus size: 40
83185794 GGATATAGCT
* ** *
83185804 ACTCGCTCAAATGCCTTCGGGGTTTAG-CCGGATATAGCT-
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG-TA
* *
83185843 ACTCGCTCAAATTCCTTCGGGACTTAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* * *
83185883 ACTCGTACAATTGCCTTCGGGACTTGGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* * * *
83185923 ACTTGCACAAATGCCTTCAGGACTTAGCCCGGATATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
83185963 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
83185998 TAATCCGAAT
Statistics
Matches: 134, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
39 38 0.28
40 96 0.72
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:83193844 original size:40 final size:40
Alignment explanation
Indices: 83193800--83193983 Score: 307
Period size: 40 Copynumber: 4.6 Consensus size: 40
83193790 CTCGCTCAAA
83193800 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAT
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAT
83193840 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAT
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAT
* *
83193880 TGCCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAAT
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAT
* * * *
83193920 TGCCTTCGGGACTTGGCCAGGTTATAGTAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAT
83193960 TGCCTTCGGG-CTTAGCCCGGTTAT
1 TGCCTTCGGGACTTAGCCCGGTTAT
83193984 CAATCCGAAT
Statistics
Matches: 138, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 12 0.09
40 126 0.91
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAT
Found at i:83199597 original size:17 final size:17
Alignment explanation
Indices: 83199577--83199615 Score: 62
Period size: 17 Copynumber: 2.3 Consensus size: 17
83199567 AAAACCAATT
83199577 CAATA-TTATAATTCCAA
1 CAATACTTA-AATTCCAA
83199594 CAATACTTAAATTCCAA
1 CAATACTTAAATTCCAA
83199611 CAATA
1 CAATA
83199616 GAATAAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 18 0.86
18 3 0.14
ACGTcount: A:0.49, C:0.21, G:0.00, T:0.31
Consensus pattern (17 bp):
CAATACTTAAATTCCAA
Found at i:83203468 original size:36 final size:36
Alignment explanation
Indices: 83203421--83203493 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
83203411 ATCAATACAT
*
83203421 AGCATAGGGTATTTATTTTTAATTGTAACTCTGTTC
1 AGCATAGGGTATTTATTTTTAATTGTAACTCTATTC
83203457 AGCATAGGGTATTTATTTTTAATTGTAACTCTATTC
1 AGCATAGGGTATTTATTTTTAATTGTAACTCTATTC
83203493 A
1 A
83203494 ATTGTCTGTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.27, C:0.11, G:0.15, T:0.47
Consensus pattern (36 bp):
AGCATAGGGTATTTATTTTTAATTGTAACTCTATTC
Found at i:83208338 original size:47 final size:47
Alignment explanation
Indices: 83208287--83208646 Score: 522
Period size: 47 Copynumber: 7.4 Consensus size: 47
83208277 TTAGGATTTT
* *
83208287 ATGTGATGGATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
***
83208334 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
*
83208385 ATGTGGTGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
83208432 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*** *
83208479 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C-----ATGCGTATGTGTGATAAGGCCGAATGGCCA
83208532 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
83208579 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
83208626 ATGTGATGAATGTGAACATGC
1 ATGTGATGAATGTGAACATGC
83208647 ATTCTATGGA
Statistics
Matches: 283, Mismatches: 20, Indels: 20
0.88 0.06 0.06
Matches are distributed among these distances:
47 194 0.69
48 1 0.00
49 2 0.01
51 43 0.15
52 1 0.00
53 42 0.15
ACGTcount: A:0.29, C:0.13, G:0.31, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:83208559 original size:23 final size:23
Alignment explanation
Indices: 83208532--83208606 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
83208522 CGAATGGCCA
83208532 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
83208555 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
83208579 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
83208602 ATGTG
1 ATGTG
83208607 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:83208575 original size:147 final size:145
Alignment explanation
Indices: 83208287--83208642 Score: 640
Period size: 147 Copynumber: 2.4 Consensus size: 145
83208277 TTAGGATTTT
*
83208287 ATGTGATGGATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* *
83208352 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATGTGAACATGCGTATGTGTGAT
66 CGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
83208417 AAGGCCGAATGGCCA
131 AAGGCCGAATGGCCA
*
83208432 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*
83208497 TGTATATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTG
66 CG--TATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTG
83208562 ATAAGGCCGAATGGCCA
129 ATAAGGCCGAATGGCCA
*
83208579 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
83208643 ATGCATTCTA
Statistics
Matches: 202, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
145 64 0.32
147 138 0.68
ACGTcount: A:0.29, C:0.13, G:0.31, T:0.27
Consensus pattern (145 bp):
ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
CGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
AAGGCCGAATGGCCA
Found at i:83209037 original size:37 final size:37
Alignment explanation
Indices: 83208930--83209020 Score: 173
Period size: 37 Copynumber: 2.5 Consensus size: 37
83208920 GGAAATATAT
*
83208930 TCCGGGTAAGACACGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
83208967 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
83209004 TCCGGGTAAGACCCGAT
1 TCCGGGTAAGACCCGAT
83209021 AAATTCATGT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 53 1.00
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:83211194 original size:19 final size:21
Alignment explanation
Indices: 83211151--83211250 Score: 73
Period size: 21 Copynumber: 5.0 Consensus size: 21
83211141 TAAATACACC
83211151 AACAGAAGCTCGTAAGAGCTG
1 AACAGAAGCTCGTAAGAGCTG
* *
83211172 AACAGAAGCTTG-AAG-GTTG
1 AACAGAAGCTCGTAAGAGCTG
* *
83211191 AACAGAAGCTC-CAA-AGCTT
1 AACAGAAGCTCGTAAGAGCTG
* * * *
83211210 AACAAAAACTCATAAGAGTTG
1 AACAGAAGCTCGTAAGAGCTG
* * *
83211231 AATAGAAGCTCATAAAAGCT
1 AACAGAAGCTCGTAAGAGCT
83211251 TAATAGAAAA
Statistics
Matches: 60, Mismatches: 15, Indels: 8
0.72 0.18 0.10
Matches are distributed among these distances:
19 26 0.43
20 5 0.08
21 29 0.48
ACGTcount: A:0.44, C:0.17, G:0.21, T:0.18
Consensus pattern (21 bp):
AACAGAAGCTCGTAAGAGCTG
Found at i:83211255 original size:21 final size:21
Alignment explanation
Indices: 83211203--83211259 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
83211193 CAGAAGCTCC
* *
83211203 AAAGCTTAACAAAAACTCATA
1 AAAGCTTAATAGAAACTCATA
* *
83211224 AGAG-TTGAATAGAAGCTCATA
1 AAAGCTT-AATAGAAACTCATA
83211245 AAAGCTTAATAGAAA
1 AAAGCTTAATAGAAA
83211260 ATAAAATACA
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
20 2 0.07
21 24 0.86
22 2 0.07
ACGTcount: A:0.53, C:0.12, G:0.14, T:0.21
Consensus pattern (21 bp):
AAAGCTTAATAGAAACTCATA
Found at i:83212812 original size:49 final size:49
Alignment explanation
Indices: 83212752--83212881 Score: 172
Period size: 49 Copynumber: 2.7 Consensus size: 49
83212742 TCTTGTGTGT
*
83212752 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACT-GATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGAAAGC
* * *
83212801 CAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGC
* * * *
83212850 TAGTGTAAGACCTGTTTGGGACACGACATCGA
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGA
83212882 ATTTAATGTA
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
48 2 0.03
49 69 0.97
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGC
Found at i:83214165 original size:21 final size:21
Alignment explanation
Indices: 83214139--83214199 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 21
83214129 ATCAATGGGG
83214139 CCACACAGGCATGTTGCCCTT
1 CCACACAGGCATGTTGCCCTT
*
83214160 CCACACTGGCATGTTGCCCTT
1 CCACACAGGCATGTTGCCCTT
* *
83214181 CCATACGGGCATG-TGCCCT
1 CCACACAGGCATGTTGCCCT
83214200 GTTTTAAGTG
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
20 6 0.16
21 31 0.84
ACGTcount: A:0.16, C:0.38, G:0.21, T:0.25
Consensus pattern (21 bp):
CCACACAGGCATGTTGCCCTT
Found at i:83216856 original size:13 final size:13
Alignment explanation
Indices: 83216808--83216872 Score: 69
Period size: 13 Copynumber: 5.1 Consensus size: 13
83216798 AGTTTAGTAT
83216808 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
83216821 TG-TTTTGAAAAA
1 TGCTTTTGAAAAG
* * *
83216833 TGATCTGGAAAAG
1 TGCTTTTGAAAAG
83216846 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
83216859 TGTTTTTGAGAAG
1 TGCTTTTGAAAAG
83216872 T
1 T
83216873 TTGGTTTAAA
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
12 11 0.26
13 31 0.74
ACGTcount: A:0.32, C:0.05, G:0.25, T:0.38
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:83221519 original size:46 final size:45
Alignment explanation
Indices: 83221452--83221626 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 45
83221442 TGTAACCCGC
83221452 CCATAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGGC-TTCGCAT
* * * *
83221498 CCATAGGTGAACTCGGACTCAACTCAACAAGTTCGGATGCTTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--GCTTCGCAT
* * * * *
83221544 ACATTTCA-CGAACTCGGACTCAACTCAACGAGTTCTGACATTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-TTCGCAT
*
83221591 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
83221627 ATGCTCAACC
Statistics
Matches: 103, Mismatches: 18, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
45 5 0.05
46 63 0.61
47 32 0.31
48 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCTTCGCAT
Found at i:83221627 original size:93 final size:93
Alignment explanation
Indices: 83221460--83221631 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
83221450 GCCCATAAGT
* * *
83221460 GAACTCGGACTCAACTCAACGAGCTTGGGCGTTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
83221525 CAAGTTCGGATGCTTAGTTACATTTCAC
66 CAAGCTCGGATGCTTAGTTACATTTCAC
*
83221553 GAACTCGGACTCAACTCAACGAG-TTCTGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTT-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
83221617 ACGAGCTCGGATGCT
65 ACAAGCTCGGATGCT
83221632 CAACCATCCT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGCTCGGATGCTTAGTTACATTTCAC
Found at i:83221646 original size:46 final size:45
Alignment explanation
Indices: 83221457--83221646 Score: 111
Period size: 46 Copynumber: 4.1 Consensus size: 45
83221447 CCCGCCCATA
* ** * *
83221457 AGTGAACTCGGACTCAACTCAACGAGCTTGGGCGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCAT-C-T
* * * *
83221502 AGGTGAACTCGGACTCAACTCAACAAGTTCGGATGCTTAGTTA-CATTT
1 A-GTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCA---ACCATCT
* * * * * * *
83221550 CA-CGAACTCGGACTCAACTCAACGAGTTCTGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGCTC-G-GATGCTCAACCATCT
83221596 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCAT-CT
83221642 AGTGA
1 AGTGA
83221647 CATGTCACTT
Statistics
Matches: 109, Mismatches: 23, Indels: 25
0.69 0.15 0.16
Matches are distributed among these distances:
44 9 0.08
45 3 0.03
46 59 0.54
47 28 0.26
48 2 0.02
49 5 0.05
50 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCT
Found at i:83223977 original size:49 final size:48
Alignment explanation
Indices: 83223844--83223973 Score: 174
Period size: 49 Copynumber: 2.7 Consensus size: 48
83223834 TCAGATAAGG
*
83223844 AAATAGAATTTAATTATTATTTAAAAGAGTTTTAGATAAATAATAATT
1 AAATAGAATTTAATTATTATTTAAAAGAGTTTTAAATAAATAATAATT
* *
83223892 AAAACATAATTTAATTATTATTTAAAAGAGTTTTAAATAAA-AGATAATT
1 -AAATAGAATTTAATTATTATTTAAAAGAGTTTTAAATAAATA-ATAATT
* *
83223941 -AATAGAATTTAAATTATTATATAAAAGACTTTT
1 AAATAGAATTT-AATTATTATTTAAAAGAGTTTT
83223974 TAAAATTCAA
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
47 8 0.11
48 21 0.29
49 43 0.60
ACGTcount: A:0.51, C:0.02, G:0.07, T:0.41
Consensus pattern (48 bp):
AAATAGAATTTAATTATTATTTAAAAGAGTTTTAAATAAATAATAATT
Found at i:83224054 original size:19 final size:21
Alignment explanation
Indices: 83224015--83224054 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
83224005 TCAGAAAAGG
83224015 AAAGAGATTCTAAATTATTTA
1 AAAGAGATTCTAAATTATTTA
*
83224036 AAAGAG-TTTTAAA-TATTTA
1 AAAGAGATTCTAAATTATTTA
83224055 TACAACCTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 6 0.33
21 6 0.33
ACGTcount: A:0.47, C:0.03, G:0.10, T:0.40
Consensus pattern (21 bp):
AAAGAGATTCTAAATTATTTA
Found at i:83227257 original size:13 final size:13
Alignment explanation
Indices: 83227235--83227267 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
83227225 AAGGGTTTGT
83227235 TTAT-TAAACTAA
1 TTATCTAAACTAA
83227247 TTATCTAAACTAA
1 TTATCTAAACTAA
*
83227260 TTAACTAA
1 TTATCTAA
83227268 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:83228699 original size:42 final size:42
Alignment explanation
Indices: 83228653--83228789 Score: 121
Period size: 42 Copynumber: 3.1 Consensus size: 42
83228643 TATGACGTTG
83228653 ATATGAGATTTCGTGTAAGAACATGTTTGGGACATGGCATCA
1 ATATGAGATTTCGTGTAAGAACATGTTTGGGACATGGCATCA
* * * * *
83228695 ATATGAGGTCTCGTGTAAGATCACGTCTGGGACATGGCATTGGCACCA
1 ATATGAGATTTCGTGTAAGAACATGTTTGGGACATGGCA-T-----CA
* * * * * *
83228743 ACATGAGACTTCGTATAAGACCATATTTGGGATATGGCATCA
1 ATATGAGATTTCGTGTAAGAACATGTTTGGGACATGGCATCA
83228785 ATATG
1 ATATG
83228790 TAGACCCATG
Statistics
Matches: 73, Mismatches: 16, Indels: 12
0.72 0.16 0.12
Matches are distributed among these distances:
42 40 0.55
43 1 0.01
47 1 0.01
48 31 0.42
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (42 bp):
ATATGAGATTTCGTGTAAGAACATGTTTGGGACATGGCATCA
Found at i:83228818 original size:90 final size:90
Alignment explanation
Indices: 83228655--83228829 Score: 219
Period size: 90 Copynumber: 1.9 Consensus size: 90
83228645 TGACGTTGAT
* * * * * * *
83228655 ATGAGATTTCGTGTAAGAACATGTTTGGGACATGGCATCAATATGAGGTCTCGTGTAAGATCACG
1 ATGAGACTTCGTATAAGAACATATTTGGGACATGGCATCAATATGAGGACCCATGTAAGACCACG
83228720 TCTGGGACATGGCATTGGCACCAAC
66 TCTGGGACATGGCATTGGCACCAAC
* * *
83228745 ATGAGACTTCGTATAAGACCATATTTGGGATATGGCATCAATATGTA-GACCCATGTAAGACCAT
1 ATGAGACTTCGTATAAGAACATATTTGGGACATGGCATCAATATG-AGGACCCATGTAAGACCAC
*
83228809 GTC-GAGGACATGGCTTTGGCA
65 GTCTG-GGACATGGCATTGGCA
83228830 TTCTATATGG
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
89 1 0.01
90 70 0.97
91 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (90 bp):
ATGAGACTTCGTATAAGAACATATTTGGGACATGGCATCAATATGAGGACCCATGTAAGACCACG
TCTGGGACATGGCATTGGCACCAAC
Found at i:83231636 original size:28 final size:26
Alignment explanation
Indices: 83231583--83231640 Score: 64
Period size: 29 Copynumber: 2.1 Consensus size: 26
83231573 ATCATGTAGA
83231583 AAAATACCAATCCAAAGTCCAAAAAAAG
1 AAAATACCAATCCAAAGT-C-AAAAAAG
*
83231611 AAAATTCCAAATCCAAAGT-AATAAAAG
1 AAAATACC-AATCCAAAGTCAA-AAAAG
83231638 AAA
1 AAA
83231641 TCTCAGAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 2 0.07
27 8 0.30
28 7 0.26
29 10 0.37
ACGTcount: A:0.62, C:0.17, G:0.07, T:0.14
Consensus pattern (26 bp):
AAAATACCAATCCAAAGTCAAAAAAG
Found at i:83234293 original size:14 final size:15
Alignment explanation
Indices: 83234265--83234294 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
83234255 TGTGAAGAAA
83234265 TATTTTTCTTCTCCT
1 TATTTTTCTTCTCCT
83234280 TATTTTTCTT-TCCT
1 TATTTTTCTTCTCCT
83234294 T
1 T
83234295 GGTCGAATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.07, C:0.23, G:0.00, T:0.70
Consensus pattern (15 bp):
TATTTTTCTTCTCCT
Found at i:83238649 original size:46 final size:47
Alignment explanation
Indices: 83238515--83238825 Score: 248
Period size: 46 Copynumber: 6.6 Consensus size: 47
83238505 TTATTTGTGT
** * * *
83238515 GCTAGTGTAAGA-CATGTCT-GGACATGCATTAGCCAC-ATTATAAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGA-GATGAGA
* * *
83238560 G-TCAGTGTAAGACCACGTCTGGGACATGGCATCGGCATTGAGATGAGA
1 GCT-AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGATGAGA
83238608 GCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCGAGATGTA-A
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATG-AGA
* *
83238654 GCCAGTGTAAGA-CATGTCTGGGACATGCATCGG-CTACGAGATGTG-
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCT-CGAGATGAGA
* * *
83238699 TC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GGATATGTGAGA
1 GCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGC-CTCGAGA--TGAGA
* * * ** *
83238748 GCTAGTGTAAGACCATGTCTGGGACATGGCGTCGACCTCAATTTCGATA
1 GCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGAT-GAGA
* * *
83238797 GTTAATGTAAGACCATGTCCGGGACATGC
1 GCTAGTGTAAGACCATGTCTGGGACATGC
83238826 CTTCAGCATT
Statistics
Matches: 220, Mismatches: 27, Indels: 35
0.78 0.10 0.12
Matches are distributed among these distances:
44 10 0.05
45 27 0.12
46 71 0.32
47 20 0.09
48 28 0.13
49 31 0.14
50 33 0.15
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGAGA
Found at i:83238765 original size:50 final size:48
Alignment explanation
Indices: 83238563--83238777 Score: 268
Period size: 46 Copynumber: 4.6 Consensus size: 48
83238553 TATAAGAGTC
* *
83238563 AGTGTAAGACCACGTCTGGGACATGGCATCGGCATTGAGATG-AGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CGAGATGTAGAGCT
* *
83238611 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CACGAGATGTAGAGCT
*
83238657 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGT-G-TC-
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGAGATGTAGAGCT
*
83238701 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GAGATGT-AGAGCT
83238751 AGTGTAAGACCATGTCTGGGACATGGC
1 AGTGTAAGACCATGTCTGGGACATGGC
83238778 GTCGACCTCA
Statistics
Matches: 148, Mismatches: 8, Indels: 20
0.84 0.05 0.11
Matches are distributed among these distances:
44 9 0.06
45 18 0.12
46 68 0.46
47 15 0.10
48 10 0.07
49 1 0.01
50 27 0.18
ACGTcount: A:0.26, C:0.19, G:0.33, T:0.22
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGAGATGTAGAGCT
Found at i:83238954 original size:21 final size:21
Alignment explanation
Indices: 83238930--83238972 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
83238920 AAAGTATAAC
*
83238930 AATGTTTTGTGTAGTACAGGT
1 AATGTTTTGAGTAGTACAGGT
*
83238951 AATGTTTTGAGTGGTACAGGT
1 AATGTTTTGAGTAGTACAGGT
83238972 A
1 A
83238973 CCTATTTGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.05, G:0.30, T:0.40
Consensus pattern (21 bp):
AATGTTTTGAGTAGTACAGGT
Found at i:83254957 original size:18 final size:18
Alignment explanation
Indices: 83254934--83254969 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
83254924 ACATGTTGAT
83254934 TTCTGAAATTTTATGGAA
1 TTCTGAAATTTTATGGAA
83254952 TTCTGAAATTTTATGGAA
1 TTCTGAAATTTTATGGAA
83254970 GAATATGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.06, G:0.17, T:0.44
Consensus pattern (18 bp):
TTCTGAAATTTTATGGAA
Found at i:83257757 original size:63 final size:64
Alignment explanation
Indices: 83257661--83257780 Score: 163
Period size: 63 Copynumber: 1.9 Consensus size: 64
83257651 TTTATTATTA
* * * *
83257661 AAATATATTGCATTTAATATATTTTAATCAATTATGTTGCATTTATTTATAAATTTTTCTTTCC
1 AAATATATTGCATTTAATATATTTTAATCAATTATGCTGAATTGATTCATAAATTTTTCTTTCC
* *
83257725 AAATATATTGCATTTGAT-T-TTTTAAGTTAATTATGCTGAATTGATTCATAAATTTT
1 AAATATATTGCATTTAATATATTTTAA-TCAATTATGCTGAATTGATTCATAAATTTT
83257781 AGTTTCACAA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
62 6 0.12
63 26 0.53
64 17 0.35
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.52
Consensus pattern (64 bp):
AAATATATTGCATTTAATATATTTTAATCAATTATGCTGAATTGATTCATAAATTTTTCTTTCC
Found at i:83260200 original size:46 final size:44
Alignment explanation
Indices: 83260142--83260314 Score: 129
Period size: 46 Copynumber: 3.8 Consensus size: 44
83260132 TCATTTGTGT
* *
83260142 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGTCACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGTC-CATTA-GA
* *
83260188 GAGCCAGTGTAAGACCATGTCTAGCACATGCCATCAGT--ATTGAGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACATG-CATCAGTCCATT-AGA
* * **
83260233 CGAGTGCTAGTGTAAGACATGTCTGGGACATGAATCAG-CC-TCGGGA
1 -GA--GCCAGTGTAAGACATGTCTGGGACATGCATCAGTCCAT-TAGA
*
83260279 CGTAAGCCAGTATAAGACATGTCTGGGACATGCATC
1 -G--AGCCAGTGTAAGACATGTCTGGGACATGCATC
83260315 GACTACGAGA
Statistics
Matches: 103, Mismatches: 13, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
45 5 0.05
46 54 0.52
47 26 0.25
48 18 0.17
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (44 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGTCCATTAGA
Found at i:83261464 original size:38 final size:38
Alignment explanation
Indices: 83261419--83261491 Score: 110
Period size: 38 Copynumber: 1.9 Consensus size: 38
83261409 AGACACGAGC
* * * *
83261419 GTGTCGTGGTCGTGTGAGGGACACGGGACATTGACACG
1 GTGTCGTGGCCGTGTGAAGGACACAGAACATTGACACG
83261457 GTGTCGTGGCCGTGTGAAGGACACAGAACATTGAC
1 GTGTCGTGGCCGTGTGAAGGACACAGAACATTGAC
83261492 GCGGACGTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.22, C:0.19, G:0.38, T:0.21
Consensus pattern (38 bp):
GTGTCGTGGCCGTGTGAAGGACACAGAACATTGACACG
Found at i:83266960 original size:10 final size:10
Alignment explanation
Indices: 83266945--83266976 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
83266935 TAAATACATT
83266945 TAATTAAAGA
1 TAATTAAAGA
83266955 TAATTAAAGA
1 TAATTAAAGA
83266965 TAATTAAA-A
1 TAATTAAAGA
83266974 TAA
1 TAA
83266977 AATCCTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (10 bp):
TAATTAAAGA
Found at i:83267002 original size:27 final size:26
Alignment explanation
Indices: 83266972--83267034 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
83266962 AGATAATTAA
83266972 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
83266999 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
83267026 AATATAAAT
1 AATA-AAAT
83267035 AAAATGGAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:83267021 original size:15 final size:15
Alignment explanation
Indices: 83267001--83267030 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
83266991 ATAATCCTAA
*
83267001 TAATTATCTTAATAT
1 TAATTATCCTAATAT
83267016 TAATTATCCTAATAT
1 TAATTATCCTAATAT
83267031 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:83268655 original size:30 final size:30
Alignment explanation
Indices: 83268619--83268680 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
83268609 ACTTATTTTA
* *
83268619 TTGTTAATTTTTTTATTATTTTAAATACAT
1 TTGTTAATTTTATTATTATTTTAAAGACAT
*
83268649 TTGTTAATTTTATTATTATTTTAGAGACAT
1 TTGTTAATTTTATTATTATTTTAAAGACAT
83268679 TT
1 TT
83268681 TCTTGTTAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.29, C:0.03, G:0.06, T:0.61
Consensus pattern (30 bp):
TTGTTAATTTTATTATTATTTTAAAGACAT
Found at i:83269020 original size:10 final size:10
Alignment explanation
Indices: 83269005--83269036 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
83268995 TAAATACATT
83269005 TAATTAAAGA
1 TAATTAAAGA
83269015 TAATTAAAGA
1 TAATTAAAGA
83269025 TAATTAAA-A
1 TAATTAAAGA
83269034 TAA
1 TAA
83269037 AATCCTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (10 bp):
TAATTAAAGA
Found at i:83269062 original size:27 final size:26
Alignment explanation
Indices: 83269032--83269094 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
83269022 AGATAATTAA
83269032 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
83269059 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
83269086 AATATAAAT
1 AATA-AAAT
83269095 AAAATGGAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:83269081 original size:15 final size:15
Alignment explanation
Indices: 83269061--83269090 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
83269051 ATAATCCTAA
*
83269061 TAATTATCTTAATAT
1 TAATTATCCTAATAT
83269076 TAATTATCCTAATAT
1 TAATTATCCTAATAT
83269091 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:83270146 original size:30 final size:30
Alignment explanation
Indices: 83270110--83270168 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
83270100 TCTATATTCA
83270110 TTTTCCTTACCCTTCTCATTATCCAAATCT
1 TTTTCCTTACCCTTCTCATTATCCAAATCT
83270140 TTTTCCTTACCCTTCTCATTATCCAAATC
1 TTTTCCTTACCCTTCTCATTATCCAAATC
83270169 CTTATCTGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.20, C:0.34, G:0.00, T:0.46
Consensus pattern (30 bp):
TTTTCCTTACCCTTCTCATTATCCAAATCT
Found at i:83270783 original size:21 final size:22
Alignment explanation
Indices: 83270734--83270784 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
83270724 TTCAGGGCTC
**
83270734 ACACGCCCGTGTGGTCCAAGGG
1 ACACGCCCGTGTGACCCAAGGG
* *
83270756 GCACGCCCGTGTGACCCTA-GG
1 ACACGCCCGTGTGACCCAAGGG
83270777 ACACGCCC
1 ACACGCCC
83270785 ATGCTATAGG
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 9 0.38
22 15 0.62
ACGTcount: A:0.18, C:0.39, G:0.31, T:0.12
Consensus pattern (22 bp):
ACACGCCCGTGTGACCCAAGGG
Found at i:83273589 original size:53 final size:52
Alignment explanation
Indices: 83273436--83273581 Score: 204
Period size: 52 Copynumber: 2.8 Consensus size: 52
83273426 GACGGAAAAG
* *
83273436 ATGTGATATGTGTGCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGCA
1 ATGTGATATGTGTTCCCGTATAAGACCATAACTGGGCTATGGCATCGGTGCA
**
83273488 ATGTGATATGTGTTCCCGTATAAGACCATAACTGGGCTATGGCATCGGTGTG
1 ATGTGATATGTGTTCCCGTATAAGACCATAACTGGGCTATGGCATCGGTGCA
* * *
83273540 ATGTGATAATGTGATT-CTGTATAAGACCATATCTGGGATATG
1 ATGTGAT-ATGTG-TTCCCGTATAAGACCATAACTGGGCTATG
83273582 ATATCGGTAT
Statistics
Matches: 85, Mismatches: 7, Indels: 3
0.89 0.07 0.03
Matches are distributed among these distances:
52 55 0.65
53 28 0.33
54 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (52 bp):
ATGTGATATGTGTTCCCGTATAAGACCATAACTGGGCTATGGCATCGGTGCA
Found at i:83273748 original size:29 final size:30
Alignment explanation
Indices: 83273691--83273806 Score: 128
Period size: 30 Copynumber: 3.9 Consensus size: 30
83273681 TAAAAAATAA
* *
83273691 AAATTGCATTTTGACCCCTAAACTTTTC-TT
1 AAATTTCATTTTGACCCTTAAAC-TTTCATT
* *
83273721 AAATTTTATTTTGACCCTTAAACTTTCTTT
1 AAATTTCATTTTGACCCTTAAACTTTCATT
* *
83273751 AAATTTCACTTAGACCCTTAAACTTTCATT
1 AAATTTCATTTTGACCCTTAAACTTTCATT
* * *
83273781 AAATTGCATTTTAACCC-TAAATTTTC
1 AAATTTCATTTTGACCCTTAAACTTTC
83273807 TAAAAATTAC
Statistics
Matches: 73, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
29 12 0.16
30 61 0.84
ACGTcount: A:0.30, C:0.21, G:0.04, T:0.45
Consensus pattern (30 bp):
AAATTTCATTTTGACCCTTAAACTTTCATT
Found at i:83273813 original size:29 final size:30
Alignment explanation
Indices: 83273691--83273820 Score: 106
Period size: 30 Copynumber: 4.4 Consensus size: 30
83273681 TAAAAAATAA
* *
83273691 AAATTGCATTTTGACCCCTAAACTTTTCT-T
1 AAATTGCATTTTAACCCTTAAAC-TTTCTAT
** * *
83273721 AAATTTTATTTTGACCCTTAAACTTTCTTT
1 AAATTGCATTTTAACCCTTAAACTTTCTAT
* *
83273751 AAATTTCA-CTTAGACCCTTAAACTTTC-ATT
1 AAATTGCATTTTA-ACCCTTAAACTTTCTA-T
* *
83273781 AAATTGCATTTTAACCC-TAAATTTTCTAA
1 AAATTGCATTTTAACCCTTAAACTTTCTAT
*
83273810 AAATTACATTT
1 AAATTGCATTT
83273821 AGCCCCAGAA
Statistics
Matches: 83, Mismatches: 12, Indels: 11
0.78 0.11 0.10
Matches are distributed among these distances:
29 25 0.30
30 55 0.66
31 3 0.04
ACGTcount: A:0.32, C:0.19, G:0.04, T:0.45
Consensus pattern (30 bp):
AAATTGCATTTTAACCCTTAAACTTTCTAT
Found at i:83279580 original size:14 final size:15
Alignment explanation
Indices: 83279555--83279593 Score: 62
Period size: 15 Copynumber: 2.6 Consensus size: 15
83279545 TCATTCATTC
83279555 AAAAGCAAAAAGAAAG
1 AAAAG-AAAAAGAAAG
83279571 -AAAGAAAAAGAAAG
1 AAAAGAAAAAGAAAG
83279585 AAAAGAAAA
1 AAAAGAAAA
83279594 TGGAGAGGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 10 0.45
15 12 0.55
ACGTcount: A:0.79, C:0.03, G:0.18, T:0.00
Consensus pattern (15 bp):
AAAAGAAAAAGAAAG
Found at i:83281270 original size:83 final size:83
Alignment explanation
Indices: 83281181--83282141 Score: 1757
Period size: 83 Copynumber: 11.5 Consensus size: 83
83281171 TCAATTTCTG
*
83281181 TTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGATGCTGAGCTATTTTCAA
1 TTTGTCAAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGATGCTGAGCTATTTTCAA
83281246 TTTTCGTTTGTCAATTTA
66 TTTTCGTTTGTCAATTTA
83281264 TTTGTCAAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGATGCTGAGCTATTTTCAA
1 TTTGTCAAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGATGCTGAGCTATTTTCAA
83281329 TTTTCGTTTGTCAATTTA
66 TTTTCGTTTGTCAATTTA
83281347 TTTGTCAAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGATGCTGAGCTATTTTCAA
1 TTTGTCAAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGATGCTGAGCTATTTTCAA
83281412 TTTTCGTTTGTCAATTTA
66 TTTTCGTTTGTCAATTTA
83281430 TTTGTCAAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGATGCTGAGCTATTTTCAA
1 TTTGTCAAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGATGCTGAGCTATTTTCAA
83281495 TTTTCGTTTGTCAATTTA
66 TTTTCGTTTGTCAATTTA
83281513 TTTGTCAAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGATGCTGAGCTATTTTCAA
1 TTTGTCAAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGATGCTGAGCTATTTTCAA
83281578 TTTTCGTTTGTCAATTTA
66 TTTTCGTTTGTCAATTTA
83281596 TTTGTCAAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGATGCTGAGCTATTTTCAA
1 TTTGTCAAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGATGCTGAGCTATTTTCAA
83281661 TTTTCGTTTGTCAATTTA
66 TTTTCGTTTGTCAATTTA
83281679 TTTGTCAAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGATGCTGAGCTATTTTCAA
1 TTTGTCAAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGATGCTGAGCTATTTTCAA
83281744 TTTTCGTTTGTCAATTTA
66 TTTTCGTTTGTCAATTTA
83281762 TTTGTCAAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGATGCTGAGCTATTTTCAA
1 TTTGTCAAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGATGCTGAGCTATTTTCAA
83281827 TTTTCGTTTGTCAATTTA
66 TTTTCGTTTGTCAATTTA
83281845 TTTGTCAAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGATGCTGAGCTATTTTCAA
1 TTTGTCAAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGATGCTGAGCTATTTTCAA
83281910 TTTTCGTTTGTCAATTTA
66 TTTTCGTTTGTCAATTTA
* *
83281928 TTTGTCAAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGCTATTTTC
1 TTTGTCAAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--ATGCTGAGCTATTTTC
***
83281993 AA-TTTCTGTCTT-TCAAAAAAAA
64 AATTTTC-GT-TTGTC--AATTTA
* ** *
83282015 ATT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGATGCTGAGCTATTTTCAA
1 TTTGTCAAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGATGCTGAGCTATTTTCAA
83282079 TTTTCGTTTGTCAATTTA
66 TTTTCGTTTGTCAATTTA
83282097 TTTGTCAAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
1 TTTGTCAAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
83282142 GGACACGCTG
Statistics
Matches: 850, Mismatches: 19, Indels: 18
0.96 0.02 0.02
Matches are distributed among these distances:
82 5 0.01
83 750 0.88
84 24 0.03
85 24 0.03
86 42 0.05
87 5 0.01
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36
Consensus pattern (83 bp):
TTTGTCAAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGATGCTGAGCTATTTTCAA
TTTTCGTTTGTCAATTTA
Found at i:83282492 original size:75 final size:75
Alignment explanation
Indices: 83282165--83283141 Score: 1051
Period size: 75 Copynumber: 12.9 Consensus size: 75
83282155 TAATTTTATC
* * *
83282165 AACAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAA-TT
1 AACAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
*
83282229 -TATTTTTC-
66 CTGTTTTTCA
* * *
83282237 AA-AAATCAACTCATATTGCGAGAGGTCAGTTGAGCCTCAAGTCACATTGAGGTATTTTCAA-TT
1 AACAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
* **
83282300 -T-ATCATC-
66 CTGTTTTTCA
* * *
83282307 AACAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
1 AACAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
* *
83282372 TTGTTTGTC-
66 CTGTTTTTCA
* *
83282381 AA-AAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTGTTTTCAATTT
1 AACAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
83282445 CTGTTTTTCA
66 CTGTTTTTCA
*
83282455 AACAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTGTTTTCAATTT
1 AACAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
83282520 CTGTTTTTCA
66 CTGTTTTTCA
83282530 AACAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AACAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
**
83282595 CTGCCTTTCAA
66 CTGTTTTTC-A
* * * *
83282606 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGGGGTAATTTT-AATT
1 AACAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTTCAATT
83282670 TCTGTTTTTCAA
65 TCTGTTTTTC-A
* * *
83282682 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTCAA-TT
1 AACAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
* **
83282746 -T-ATCATC-
66 CTGTTTTTCA
83282753 AACAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AACAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
83282818 CTGTTCAATTT-A
66 CTGTT---TTTCA
*** * *
83282830 TGTTTTTTAA-AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGGCACGCTGAGGTATT
1 --------AACAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATT
* *
83282894 GTCAATTTTTGTGTTTT-A
58 TTCAATTTCTGT-TTTTCA
* * *
83282912 ATTTATTTTTCAAAAATCAACTCAGATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTA
1 A---A-----C--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
* ** *
83282977 TTTTCAA-TT-T-ATCATAA
56 TTTTCAATTTCTGTTTTTCA
* * ** *
83282994 AAAAAATCAACTCATATTGCGAGATGTGAGTTGAGCCTCATTTCACACGTTGAGGTGTTTTCAAT
1 AACAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA--AGACACGTTGAGGTATTTTCAAT
83283059 TTCTGTTTTTCA
64 TTCTGTTTTTCA
* * * * ** *
83283071 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACATGCAGAGGTAATTTCAATTT
1 AACAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
*
83283136 TTGTTT
66 CTGTTT
83283142 GCGAGAGGTG
Statistics
Matches: 776, Mismatches: 87, Indels: 81
0.82 0.09 0.09
Matches are distributed among these distances:
70 5 0.01
71 169 0.22
72 41 0.05
73 69 0.09
74 27 0.03
75 174 0.22
76 117 0.15
77 49 0.06
79 1 0.00
81 2 0.00
82 6 0.01
83 1 0.00
84 61 0.08
85 54 0.07
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (75 bp):
AACAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
CTGTTTTTCA
Found at i:83282856 original size:84 final size:83
Alignment explanation
Indices: 83282738--83283141 Score: 328
Period size: 85 Copynumber: 5.0 Consensus size: 83
83282728 ATTGAGGTAT
**
83282738 TTTCAATTTA-TCATCAACAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTT
1 TTTCAATTTATTTTTCAA-AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTT
83282802 GAGGTATTTTCAATTTCTG
65 GAGGTATTTTCAATTTCTG
* *** * *
83282821 -TTCAATTTATGTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGGCACGC
1 TTTCAATTTA--TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGT
* *
83282885 TGAGGTATTGTCAATTTTTGTG
64 TGAGGTATTTTCAA--TTTCTG
* * * *
83282907 TTTTAATTTATTTTTCAAAAATCAACTCAGATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATTG
1 TTTCAATTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTG
83282972 AGGTATTTTCAA--T-T-
66 AGGTATTTTCAATTTCTG
* ** * **
83282986 TATC-A--TA----AAAAAAATCAACTCATATTGCGAGATGTGAGTTGAGCCTCATTTCACACGT
1 TTTCAATTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA--AGACACGT
*
83283044 TGAGGTGTTTTCAATTTCTG
64 TGAGGTATTTTCAATTTCTG
* * * * * **
83283064 TTT---TTCA-----AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACATGCAG
1 TTTCAATTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTG
* *
83283121 AGGTAATTTCAATTTTTG
66 AGGTATTTTCAATTTCTG
83283139 TTT
1 TTT
83283142 GCGAGAGGTG
Statistics
Matches: 265, Mismatches: 42, Indels: 36
0.77 0.12 0.10
Matches are distributed among these distances:
72 37 0.14
74 17 0.06
75 23 0.09
76 3 0.01
77 40 0.15
78 4 0.02
79 2 0.01
80 1 0.00
81 1 0.00
82 9 0.03
84 53 0.20
85 62 0.23
86 5 0.02
87 8 0.03
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36
Consensus pattern (83 bp):
TTTCAATTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTG
AGGTATTTTCAATTTCTG
Found at i:83283040 original size:72 final size:76
Alignment explanation
Indices: 83282923--83283110 Score: 249
Period size: 72 Copynumber: 2.5 Consensus size: 76
83282913 TTTATTTTTC
* *
83282923 AAAAATCAACTCAGATTGCGAGAGGTGAGTTGAGCCTCAAGTCACA-TTGAGGTATTTTCAA-TT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGTCACACTTGAGGTATTTTCAATTT
83282986 -T-ATCATAAA
66 CTGATCATAAA
* ** *
83282995 AAAAATCAACTCATATTGCGAGATGTGAGTTGAGCCTCATTTCACACGTTGAGGTGTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGTCACAC-TTGAGGTATTTTCAATT
* ** *
83283060 TCTGTTTTTCAA
65 TCTGATCATAAA
83283072 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCA
83283111 GGACATGCAG
Statistics
Matches: 101, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
72 42 0.42
74 14 0.14
75 2 0.02
76 1 0.01
77 42 0.42
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.31
Consensus pattern (76 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGTCACACTTGAGGTATTTTCAATTT
CTGATCATAAA
Found at i:83283177 original size:53 final size:52
Alignment explanation
Indices: 83283087--83283188 Score: 134
Period size: 53 Copynumber: 1.9 Consensus size: 52
83283077 TCAACTCATA
*
83283087 TTGCGAGAAGTGAGTTGAGCCTCAGGACATGCAGAGGTAATTTCAATTTTTGT
1 TTGCGAGAAGTGAGTTGAGCCTCAGCACAT-CAGAGGTAATTTCAATTTTTGT
* * *
83283140 TTGCGAGAGGTGAGTTGAGCCTCAAGTCACAT-TGAGGTATTTTCAATTT
1 TTGCGAGAAGTGAGTTGAGCCTC-AG-CACATCAGAGGTAATTTCAATTT
83283189 ATCATCAACA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
53 37 0.86
54 2 0.05
55 4 0.09
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.33
Consensus pattern (52 bp):
TTGCGAGAAGTGAGTTGAGCCTCAGCACATCAGAGGTAATTTCAATTTTTGT
Found at i:83283236 original size:124 final size:129
Alignment explanation
Indices: 83283010--83283266 Score: 371
Period size: 124 Copynumber: 2.0 Consensus size: 129
83283000 TCAACTCATA
* ** * * **
83283010 TTGCGAGATGTGAGTTGAGCCTCATTTCACACGTTGAGGTGTTTTCAATTTCTGTTTTTCAAAAA
1 TTGCGAGAGGTGAGTTGAGCCTCAAGTCACAC-TTGAGGTATTTTCAATTTCTGATCATCAAAAA
*
83283075 AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACATGCAGAGGTAATTTCAATTTTTGT
65 AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCAGAGGTAATTTCAATTTTTGT
*
83283140 TTGCGAGAGGTGAGTTGAGCCTCAAGTCACA-TTGAGGTATTTTCAA-TT-T-ATCATC-AACAA
1 TTGCGAGAGGTGAGTTGAGCCTCAAGTCACACTTGAGGTATTTTCAATTTCTGATCATCAAAAAA
* *
83283200 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGT
66 ATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCAGAGGTAATTTCAATTTTTGT
83283264 TTG
1 TTG
83283267 TCAAAAATCA
Statistics
Matches: 116, Mismatches: 11, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
124 68 0.59
125 3 0.03
126 1 0.01
127 2 0.02
128 14 0.12
130 28 0.24
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (129 bp):
TTGCGAGAGGTGAGTTGAGCCTCAAGTCACACTTGAGGTATTTTCAATTTCTGATCATCAAAAAA
ATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCAGAGGTAATTTCAATTTTTGT
Found at i:83283256 original size:71 final size:72
Alignment explanation
Indices: 83283140--83283417 Score: 272
Period size: 85 Copynumber: 3.7 Consensus size: 72
83283130 CAATTTTTGT
* * *
83283140 TTGCGAGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTCAA-TTT-ATCATCAACAAATC
1 TTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTTGATCATCAA-AAATC
83283203 AACTCATA
65 AACTCATA
* * * **
83283211 TTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATC
1 TTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA-TTTTGATCATCAAAAATC
83283276 AACTCATA
65 AACTCATA
* * * *
83283284 TTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGCTATTTTTAATTTCTGCCTTTCAAAAAAA
1 TTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTT-TG---ATC-------
83283349 ATCAAAAAAATCAACTCATA
55 ATC--AAAAATCAACTCATA
* * *
83283369 TTGCGAGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTCAATTT
1 TTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTT
83283418 ATAATTGAGT
Statistics
Matches: 172, Mismatches: 19, Indels: 18
0.82 0.09 0.09
Matches are distributed among these distances:
71 41 0.24
72 3 0.02
73 59 0.34
74 5 0.03
76 2 0.01
83 2 0.01
85 60 0.35
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (72 bp):
TTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTTGATCATCAAAAATCA
ACTCATA
Found at i:83283305 original size:73 final size:71
Alignment explanation
Indices: 83283140--83283419 Score: 256
Period size: 73 Copynumber: 3.7 Consensus size: 71
83283130 CAATTTTTGT
* * *
83283140 TTGCGAGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTCAATTTATCATCAACAAATCAA
1 TTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATCATCAACAAATCAA
83283205 CTCATA
66 CTCATA
* * * **
83283211 TTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGTTTGTCAA-AAAT
1 TTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA--TTT-ATCATCAACAAAT
83283275 CAACTCATA
63 CAACTCATA
* * * *
83283284 TTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGCTATTTTTAATTTCTGCCTTTCAAAAAAA
1 TTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA--T-T---TATC-------
*
83283349 ATCAAAAAAATCAACTCATA
53 ATC-AACAAATCAACTCATA
* * *
83283369 TTGCGAGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTCAATTTAT
1 TTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
83283420 AATTGAGTTG
Statistics
Matches: 173, Mismatches: 20, Indels: 24
0.80 0.09 0.11
Matches are distributed among these distances:
71 41 0.24
73 60 0.35
74 6 0.03
76 2 0.01
77 1 0.01
79 2 0.01
82 1 0.01
83 3 0.02
84 2 0.01
85 55 0.32
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.31
Consensus pattern (71 bp):
TTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATCATCAACAAATCAA
CTCATA
Found at i:83283434 original size:273 final size:266
Alignment explanation
Indices: 83282921--83283417 Score: 584
Period size: 273 Copynumber: 1.8 Consensus size: 266
83282911 AATTTATTTT
* * *
83282921 TCAAAAATCAACTCAGATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTCAATT
1 TCAAAAATCAACTCAGATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTAATTTCAATT
* * * *
83282986 TATCATAAAAAAAATCAACTCATATTGCGAGATGTGAGTTGAGCCTCATTTCACACGTTGAGGTG
66 TATCATAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-TACACACGTTGAGCTA
* *
83283051 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACA
130 TTTTCAATTTCTGTTTATCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGCACA
*
83283116 TGCAGAGGTAATTTCAATTTTTGTTTGCGAGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATT
195 T-CAGAGGTAATTTCAA--TTTGTAT--GAGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATT
83283181 TTCAATTTATCA
255 TTCAATTTATCA
* * *
83283193 TCAACAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
1 TCAA-AAATCAACTCAGATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTAATTTCAAT
* ** *** *
83283258 TTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-AGACACGTTGAGCT
65 TTAT-CATAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCATACACACGTTGAGCT
* *
83283322 ATTTTTAATTTCTGCCTTTCAAAAAAAATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
129 ATTTTCAATTTCTG--TTT--------ATCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
* *
83283387 GCCTCAAGTCACAT-TGAGGTATTTTCAATTT
184 GCCTC-AG-CACATCAGAGGTAATTTCAATTT
83283418 ATAATTGAGT
Statistics
Matches: 188, Mismatches: 23, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
272 27 0.14
273 57 0.30
274 42 0.22
280 3 0.02
282 53 0.28
283 2 0.01
284 4 0.02
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (266 bp):
TCAAAAATCAACTCAGATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTAATTTCAATT
TATCATAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCATACACACGTTGAGCTAT
TTTCAATTTCTGTTTATCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGCACAT
CAGAGGTAATTTCAATTTGTATGAGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTCAAT
TTATCA
Found at i:83283505 original size:54 final size:54
Alignment explanation
Indices: 83283423--83283596 Score: 303
Period size: 54 Copynumber: 3.2 Consensus size: 54
83283413 AATTTATAAT
83283423 TGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGG
1 TGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGG
83283477 TGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGG
1 TGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGG
* * * *
83283531 TGAGTTGAGCATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGG
1 TGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGG
*
83283585 TAAGTTGAGCCT
1 TGAGTTGAGCCT
83283597 CAAGACACGT
Statistics
Matches: 114, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 114 1.00
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.38
Consensus pattern (54 bp):
TGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGG
Found at i:83283666 original size:75 final size:74
Alignment explanation
Indices: 83283542--83283923 Score: 487
Period size: 71 Copynumber: 5.3 Consensus size: 74
83283532 GAGTTGAGCA
* * *
83283542 TTTCAATTTTTGTTTGTC-AAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAGACACG
1 TTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
*
83283606 TTGAGATAT
66 TTGAGGTAT
* *
83283615 TTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTCAGTTGAGCCTCAAGTCAC
1 TTTCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
*
83283680 ATTGAGGTAT
65 GTTGAGGTAT
* ** *
83283690 TTTCAA-TT-T-ATCATCAACAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
1 TTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
*
83283752 CTGAGGTAT
66 TTGAGGTAT
*
83283761 TTTCAA-TT-TATTTTTC-AAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTCAAGACACG
1 TTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
83283822 TTGAGGTAT
66 TTGAGGTAT
* * * *
83283831 TTTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAG--AC
1 TTTCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
* *
83283894 GCTGAGGTGT
65 GTTGAGGTAT
* *
83283904 TTTCCATTTCTGTTCTTCAA
1 TTTCAATTTCTGTTTTTCAA
83283924 TTTCTGTTTT
Statistics
Matches: 274, Mismatches: 27, Indels: 17
0.86 0.08 0.05
Matches are distributed among these distances:
70 36 0.13
71 84 0.31
72 15 0.05
73 41 0.15
74 25 0.09
75 73 0.27
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.34
Consensus pattern (74 bp):
TTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
TTGAGGTAT
Found at i:83283978 original size:87 final size:87
Alignment explanation
Indices: 83283832--83284493 Score: 839
Period size: 87 Copynumber: 7.6 Consensus size: 87
83283822 TTGAGGTATT
* *
83283832 TTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAGACGCT
1 TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAGACGCT
83283897 GAGGTGTTTTCCATTTCTGTTC
66 GAGGTGTTTTCCATTTCTGTTC
83283919 TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAGACGCT
1 TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAGACGCT
83283984 GAGGTGTTTTCCATTTCTGTTC
66 GAGGTGTTTTCCATTTCTGTTC
83284006 TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAGACGCT
1 TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAGACGCT
83284071 GAGGTGTTTTCCATTTCTGTTC
66 GAGGTGTTTTCCATTTCTGTTC
83284093 TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAGACGCT
1 TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAGACGCT
83284158 GAGGTGTTTTCCATTTCTGTTC
66 GAGGTGTTTTCCATTTCTGTTC
* * ** *
83284180 TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACA
1 TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTC-AAG-ACG
* *
83284245 CTGAGGTATTTTCAATTTCTGTT-
64 CTGAGGTGTTTTCCATTTCTGTTC
* * * * *
83284268 TCTCAATTTATGTTTGTC--AAAAATCAACTCATACTGCGA-AGGTGAGTTGAGCTTCGGCTC-A
1 T-TCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGA---AC--CTCAA
* * * * * *
83284329 CATGCTGAGGTATTTTCAATTTATGTTTTT
60 GACGCTGAGGTGTTTTCCATTTCTG--TTC
* * * *
83284359 TTCAATCTATGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACG
1 TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAA-G-ACG
* *
83284422 CTGAGGTATTTTCAATTTCTGCTT-
64 CTGAGGTGTTTTCCATTTCTG-TTC
* *
83284446 TACTAA-TTCTGCTTTTC----AAATCAACTCATATTGCGAG-AGATGAGTTGA
1 TTC-AATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAG-TGAGTTGA
83284494 GTCTCGGGCC
Statistics
Matches: 527, Mismatches: 31, Indels: 36
0.89 0.05 0.06
Matches are distributed among these distances:
84 1 0.00
85 28 0.05
86 14 0.03
87 345 0.65
88 28 0.05
89 60 0.11
90 36 0.07
91 15 0.03
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (87 bp):
TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAGACGCT
GAGGTGTTTTCCATTTCTGTTC
Found at i:83284122 original size:174 final size:172
Alignment explanation
Indices: 83283832--83284686 Score: 866
Period size: 174 Copynumber: 4.8 Consensus size: 172
83283822 TTGAGGTATT
* *
83283832 TTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAG-ACGC
1 TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAGCACGC
* *
83283896 TGAGGTGTTTTCCATTTCTGTTCTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGA
66 TGAGGTATTTTCAATTTCTGTT-TTCAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGA
83283961 AGTGAGTTGAACCTCAAGACGCTGAGGTGTTTTCCATTTCTGTTC
128 AGTGAGTTGAACCTCAAGACGCTGAGGTGTTTTCCATTTCTGTTC
83284006 TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAG-ACGC
1 TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAGCACGC
* *
83284070 TGAGGTGTTTTCCATTTCTGTTCTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGA
66 TGAGGTATTTTCAATTTCTGTT-TTCAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGA
83284135 AGTGAGTTGAACCTCAAGACGCTGAGGTGTTTTCCATTTCTGTTC
128 AGTGAGTTGAACCTCAAGACGCTGAGGTGTTTTCCATTTCTGTTC
* * ** *
83284180 TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACA
1 TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTC-AAGCACG
* * * *
83284245 CTGAGGTATTTTCAATTTCTGTTTCTCAATTTATGTTTGTCAAAAATCAACTCATACTGCGA-AG
65 CTGAGGTATTTTCAATTTCTGTTT-TCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAA
* * * * * * *
83284309 GTGAGTTGAGCTTCGGCTC-ACATGCTGAGGTATTTTCAATTTATGTTTTT
129 GTGAGTTGA---AC--CTCAAGACGCTGAGGTGTTTTCCATTTCTG--TTC
* * * *
83284359 TTCAATCTATGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACG
1 TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAA-GCACG
* *
83284422 CTGAGGTATTTTCAATTTCTGCTTTACTAA-TTCTGCTTTTC--AAATCAACTCATATTGCGAG-
65 CTGAGGTATTTTCAATTTCTG-TTTTC-AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGA
* * * * ** *
83284483 AGATGAGTTGAGTCTCGGGCCACACGCTGAGGTCTTTTCAAATTTTGTTTTTAATTTCTGTTTT
128 AG-TGAGTTGA-AC-C--TCAAGACGCTGAGG-------------TGTTTTCCATTTCTG-TTC
* * * * * * * *
83284547 TTTAATTTCTGTGTTTCAAAAAAAATCAGCTCATATTGCAAGAGGTAAGTTGAGCCTCAGGGCAC
1 TTCAATTTCTGTTTTTC-AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCA-AGCAC
* *
83284612 GTTGAGGTATTTTCAATTTCTACTTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGA
64 GCTGAGGTATTTTCAATTTCT-GTTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGA
*
83284677 GGTGAGTTGA
128 AGTGAGTTGA
83284687 GCCTTTTAGT
Statistics
Matches: 590, Mismatches: 51, Indels: 61
0.84 0.07 0.09
Matches are distributed among these distances:
173 11 0.02
174 249 0.42
175 22 0.04
176 56 0.09
177 93 0.16
178 8 0.01
179 17 0.03
188 17 0.03
189 12 0.02
190 2 0.00
191 74 0.13
193 28 0.05
194 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (172 bp):
TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAGCACGC
TGAGGTATTTTCAATTTCTGTTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAAGT
GAGTTGAACCTCAAGACGCTGAGGTGTTTTCCATTTCTGTTC
Found at i:83284373 original size:15 final size:16
Alignment explanation
Indices: 83284341--83284374 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
83284331 TGCTGAGGTA
*
83284341 TTTTCAATTTATGTTT
1 TTTTCAATCTATGTTT
83284357 TTTTCAATCTATGTTT
1 TTTTCAATCTATGTTT
83284373 TT
1 TT
83284375 CAAAAATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.09, G:0.06, T:0.68
Consensus pattern (16 bp):
TTTTCAATCTATGTTT
Found at i:83284550 original size:15 final size:15
Alignment explanation
Indices: 83284530--83284558 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
83284520 TCAAATTTTG
83284530 TTTTTAATTTCTGTT
1 TTTTTAATTTCTGTT
83284545 TTTTTAATTTCTGT
1 TTTTTAATTTCTGT
83284559 GTTTCAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.72
Consensus pattern (15 bp):
TTTTTAATTTCTGTT
Found at i:83284727 original size:56 final size:55
Alignment explanation
Indices: 83284634--83284802 Score: 243
Period size: 55 Copynumber: 3.1 Consensus size: 55
83284624 TCAATTTCTA
83284634 CTTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 CTTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* *
83284689 CTTTT-AGTTTCTGTTTTTCAAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGC
1 CTTTTCAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* * * *
83284745 CTTTTGCAAATTCT-ATTTTCAAAAATCAACTCATATTGTGAGAAGTGAGTTGAGC
1 CTTTT-CAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
83284800 CTT
1 CTT
83284803 GGCTCACGTG
Statistics
Matches: 102, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
54 13 0.13
55 40 0.39
56 39 0.38
57 5 0.05
58 5 0.05
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (55 bp):
CTTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
Found at i:83285134 original size:30 final size:29
Alignment explanation
Indices: 83285072--83285186 Score: 110
Period size: 29 Copynumber: 3.9 Consensus size: 29
83285062 TTAAAAATAA
* *
83285072 AAATTACATTTTGACCCCT-AACTTT-TCCT
1 AAATTTCATTTTGA-CCCTAAACTTTCT-TT
83285101 AAATTTCATTTTGACCCTTAAACTTTCTTT
1 AAATTTCATTTTGACCC-TAAACTTTCTTT
* * *
83285131 AAATTTCACTTAGACCCTAAACTTTCATT
1 AAATTTCATTTTGACCCTAAACTTTCTTT
* *
83285160 AAATTGT-ATTTTAACCCTAAATTTTCT
1 AAATT-TCATTTTGACCCTAAACTTTCT
83285187 AAAAATTACA
Statistics
Matches: 72, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
28 3 0.04
29 45 0.62
30 23 0.32
31 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.03, T:0.44
Consensus pattern (29 bp):
AAATTTCATTTTGACCCTAAACTTTCTTT
Found at i:83285199 original size:29 final size:29
Alignment explanation
Indices: 83285069--83285199 Score: 74
Period size: 29 Copynumber: 4.5 Consensus size: 29
83285059 AAATTAAAAA
*
83285069 TAAAAATTACATTTTGACCCCT-AACTTTTCC
1 TAAAAATTACATTTT-AACCCTAAAC-TTT-C
* *
83285100 T--AAATTTCATTTTGACCCTTAAACTTTC
1 TAAAAATTACATTTTAACCC-TAAACTTTC
** * *
83285128 TTTAAATTTCA-CTTAGACCCTAAACTTTC
1 TAAAAATTACATTTTA-ACCCTAAACTTTC
* ** *
83285157 -ATTAAATTGTATTTTAACCCTAAATTTTC
1 TA-AAAATTACATTTTAACCCTAAACTTTC
83285186 TAAAAATTACATTT
1 TAAAAATTACATTT
83285200 AGCCCCAGAA
Statistics
Matches: 79, Mismatches: 13, Indels: 18
0.72 0.12 0.16
Matches are distributed among these distances:
28 5 0.06
29 54 0.68
30 19 0.24
31 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.03, T:0.44
Consensus pattern (29 bp):
TAAAAATTACATTTTAACCCTAAACTTTC
Found at i:83286693 original size:18 final size:18
Alignment explanation
Indices: 83286626--83286716 Score: 82
Period size: 17 Copynumber: 5.1 Consensus size: 18
83286616 TGTTGTAATC
* *
83286626 TTTTCGTGTTTCCAAAAT
1 TTTTCGTGTTTTCAAAAA
*
83286644 TTTTCGTGTTTTTTAAAAAA
1 TTTTCGTG--TTTTCAAAAA
**
83286664 AATTCAG-G-TTTCAAAAA
1 TTTTC-GTGTTTTCAAAAA
83286681 TTTTCGTGTTTTC-AAAA
1 TTTTCGTGTTTTCAAAAA
83286698 TTTTCGTGTTTT-AAAAA
1 TTTTCGTGTTTTCAAAAA
83286715 TT
1 TT
83286717 CTCATTTTTC
Statistics
Matches: 59, Mismatches: 8, Indels: 13
0.74 0.10 0.16
Matches are distributed among these distances:
16 1 0.02
17 34 0.58
18 12 0.20
20 11 0.19
21 1 0.02
ACGTcount: A:0.30, C:0.10, G:0.11, T:0.49
Consensus pattern (18 bp):
TTTTCGTGTTTTCAAAAA
Found at i:83292487 original size:6 final size:6
Alignment explanation
Indices: 83292472--83292502 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
83292462 ATCGATTGGG
*
83292472 TATATA TATATT TATATT TATATT TATATT T
1 TATATT TATATT TATATT TATATT TATATT T
83292503 TAAGGTAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (6 bp):
TATATT
Found at i:83300061 original size:3 final size:3
Alignment explanation
Indices: 83300055--83300131 Score: 77
Period size: 3 Copynumber: 25.0 Consensus size: 3
83300045 TTAACAACAT
* *
83300055 TAA TAA TAAA TAA TAA TAA TGA TGAA -AA TAA TAA TAA TGA TACA -AA
1 TAA TAA T-AA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TA-A TAA
*
83300101 TACA AAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
83300132 CGACGTGAGT
Statistics
Matches: 62, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
2 3 0.05
3 52 0.84
4 7 0.11
ACGTcount: A:0.65, C:0.03, G:0.04, T:0.29
Consensus pattern (3 bp):
TAA
Done.