Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 251 of 322
Found at i:83300085 original size:25 final size:25
Alignment explanation
Indices: 83300055--83300127 Score: 85
Period size: 25 Copynumber: 2.8 Consensus size: 25
83300045 TTAACAACAT
*
83300055 TAATAATAAATAATAATAATGATGAAAA
1 TAATAAT-AATAATAATAAT-A-CAAAA
*
83300083 TAATAATAATGATACA-AATACAAAA
1 TAATAATAATAATA-ATAATACAAAA
83300108 TAATAATAATAATAATAATA
1 TAATAATAATAATAATAATA
83300128 ATAACGACGT
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
24 1 0.03
25 21 0.52
26 1 0.03
27 9 0.22
28 8 0.20
ACGTcount: A:0.64, C:0.03, G:0.04, T:0.29
Consensus pattern (25 bp):
TAATAATAATAATAATAATACAAAA
Found at i:83300259 original size:3 final size:3
Alignment explanation
Indices: 83300244--83300423 Score: 131
Period size: 3 Copynumber: 59.7 Consensus size: 3
83300234 GATAATACAT
* * * *
83300244 TAA TAA GAA TAA TAA TAA T-A TAC TAA TAA TAA CAA TAA TAGA AAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA
* * * *
83300289 TAA TAA TAA TAA TAA TAA -AA TAAA GAA TAA TGA CAA CAA TAA T-A
1 TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA
* * *
83300333 TAAA TAG TAA TAGA -AA -AA TAA TAA TAGA -AA TAG TAA CAA TAA TAA
1 T-AA TAA TAA TA-A TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA
*
83300378 TAAA TAA TAA -AA GTAA TAG TAA TAA TAA TAAA TAA TAA TAA TAA TA
1 T-AA TAA TAA TAA -TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TA
83300424 TTAGTAATAT
Statistics
Matches: 141, Mismatches: 22, Indels: 28
0.74 0.12 0.15
Matches are distributed among these distances:
2 12 0.09
3 113 0.80
4 16 0.11
ACGTcount: A:0.65, C:0.03, G:0.06, T:0.27
Consensus pattern (3 bp):
TAA
Found at i:83300356 original size:21 final size:22
Alignment explanation
Indices: 83300332--83300377 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 22
83300322 CAACAATAAT
*
83300332 ATAAATAGTAATAG-AAAAATA
1 ATAAATAGAAATAGTAAAAATA
*
83300353 AT-AATAGAAATAGTAACAATA
1 ATAAATAGAAATAGTAAAAATA
83300374 ATAA
1 ATAA
83300378 TAAATAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
20 10 0.48
21 10 0.48
22 1 0.05
ACGTcount: A:0.65, C:0.02, G:0.09, T:0.24
Consensus pattern (22 bp):
ATAAATAGAAATAGTAAAAATA
Found at i:83300437 original size:28 final size:28
Alignment explanation
Indices: 83300289--83300443 Score: 103
Period size: 28 Copynumber: 5.7 Consensus size: 28
83300279 TAATAGAAAA
83300289 TAATAATAAT-AATAATAAAA-TAA-AG
1 TAATAATAATAAATAATAAAAGTAATAG
* * * *
83300314 -AATAATGA-CAACAATAATA-TAAATAG
1 TAATAATAATAAATAATAAAAGT-AATAG
* * *
83300340 TAAT-AGAA-AAATAATAATAGAAATAG
1 TAATAATAATAAATAATAAAAGTAATAG
83300366 TAACAATAATAATAAATAATAAAAGTAATAG
1 T---AATAATAATAAATAATAAAAGTAATAG
*
83300397 TAATAATAATAAATAATAATAA-TAATAT
1 TAATAATAATAAATAATAA-AAGTAATAG
* * *
83300425 TAGTAATATTAAAGAATAA
1 TAATAATAATAAATAATAA
83300444 CATAGTAAGG
Statistics
Matches: 104, Mismatches: 15, Indels: 19
0.75 0.11 0.14
Matches are distributed among these distances:
24 16 0.15
25 2 0.02
26 19 0.18
27 3 0.03
28 39 0.38
29 5 0.05
30 3 0.03
31 17 0.16
ACGTcount: A:0.64, C:0.02, G:0.06, T:0.28
Consensus pattern (28 bp):
TAATAATAATAAATAATAAAAGTAATAG
Found at i:83300556 original size:3 final size:3
Alignment explanation
Indices: 83300475--83300543 Score: 50
Period size: 3 Copynumber: 22.7 Consensus size: 3
83300465 AAGAATGGTG
* * * * * * *
83300475 ATA ATA ATA CTA CTA CTA AAA ATA ATA ATG ATA GTA ATA GTA ATA A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
83300522 AGTAA ATA ATA ATA ATA ATA AT
1 A-T-A ATA ATA ATA ATA ATA AT
83300544 TAGTGATAAT
Statistics
Matches: 53, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
2 2 0.04
3 48 0.91
4 1 0.02
5 2 0.04
ACGTcount: A:0.59, C:0.04, G:0.06, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:83300575 original size:25 final size:25
Alignment explanation
Indices: 83300526--83300575 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
83300516 AATAAAAGTA
*
83300526 AATAATAATAATAATAATTAGTGAT
1 AATAATAATAATAATAATTACTGAT
83300551 AATAATCAA-AATAA-AATTAACTGAT
1 AATAAT-AATAATAATAATT-ACTGAT
83300576 TTAATAACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
24 4 0.18
25 16 0.73
26 2 0.09
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.32
Consensus pattern (25 bp):
AATAATAATAATAATAATTACTGAT
Found at i:83303126 original size:22 final size:22
Alignment explanation
Indices: 83303100--83303145 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
83303090 GTTTTTATCT
83303100 TTATCTTTTGTACTCTTAATTC
1 TTATCTTTTGTACTCTTAATTC
83303122 TTATCTTTTGTACTCTTAATTC
1 TTATCTTTTGTACTCTTAATTC
83303144 TT
1 TT
83303146 TTGCCATTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.04, T:0.61
Consensus pattern (22 bp):
TTATCTTTTGTACTCTTAATTC
Found at i:83303478 original size:56 final size:56
Alignment explanation
Indices: 83303371--83303479 Score: 139
Period size: 56 Copynumber: 1.9 Consensus size: 56
83303361 ATACTCAAAA
* * *
83303371 AATATTATTTTTTAACTTTTATACAATATATTTTAATATTATTTACTATATGTTAC
1 AATATTATTTTTTAACTTCTATACAATATATTTTAATATTATGTACAATATGTTAC
* * * *
83303427 AATATTGTTTTTTAACTTCTATATAGTATATTTTAATATT-TAGTAGAATATGT
1 AATATTATTTTTTAACTTCTATACAATATATTTTAATATTAT-GTACAATATGT
83303480 GGAAGATTAT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
55 1 0.02
56 44 0.98
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.54
Consensus pattern (56 bp):
AATATTATTTTTTAACTTCTATACAATATATTTTAATATTATGTACAATATGTTAC
Found at i:83307461 original size:17 final size:19
Alignment explanation
Indices: 83307422--83307461 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 19
83307412 AACCTAGACA
83307422 AAACTTAAGTTTATATACT
1 AAACTTAAGTTTATATACT
83307441 --ACTTAAGTTTA-A-ACT
1 AAACTTAAGTTTATATACT
83307456 AAACTT
1 AAACTT
83307462 TTGTTTGCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 6
0.76 0.00 0.24
Matches are distributed among these distances:
15 3 0.16
16 1 0.05
17 15 0.79
ACGTcount: A:0.42, C:0.12, G:0.05, T:0.40
Consensus pattern (19 bp):
AAACTTAAGTTTATATACT
Found at i:83307834 original size:16 final size:16
Alignment explanation
Indices: 83307813--83307843 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
83307803 AGAACAAGTA
83307813 TTGAATAATTTAAAAT
1 TTGAATAATTTAAAAT
83307829 TTGAATAATTTAAAA
1 TTGAATAATTTAAAA
83307844 CTTAAGATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (16 bp):
TTGAATAATTTAAAAT
Found at i:83308239 original size:23 final size:24
Alignment explanation
Indices: 83308194--83308239 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
83308184 CTTTAGTCAA
* * *
83308194 TTTTTATTTCCTACAACTTATTTC
1 TTTTTATTTCATACAAATGATTTC
83308218 TTTTTATTT-ATACAAATGATTT
1 TTTTTATTTCATACAAATGATTT
83308240 TTAATAAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.26, C:0.13, G:0.02, T:0.59
Consensus pattern (24 bp):
TTTTTATTTCATACAAATGATTTC
Found at i:83308379 original size:21 final size:23
Alignment explanation
Indices: 83308355--83308398 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
83308345 TTGTAAAGAA
83308355 AAATATAAT-T-TAGTAATTTTT
1 AAATATAATATATAGTAATTTTT
*
83308376 AAATTTAATATAATAGTAATTTT
1 AAATATAATAT-ATAGTAATTTT
83308399 AACCCTCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 8 0.42
22 1 0.05
24 10 0.53
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (23 bp):
AAATATAATATATAGTAATTTTT
Found at i:83319659 original size:39 final size:39
Alignment explanation
Indices: 83319606--83319688 Score: 96
Period size: 39 Copynumber: 2.1 Consensus size: 39
83319596 CTTTCCACAG
* * *
83319606 TCCCTCCCCCTACTCCGAC-TCTCTCCCTCTTTCCCACCA
1 TCCCTCACCCTACTCC-ACTTCTCTACCTCTCTCCCACCA
* * *
83319645 TCCCTCACCTTACTCCTCTTCTCTACCTCTCTCCCACCG
1 TCCCTCACCCTACTCCACTTCTCTACCTCTCTCCCACCA
83319684 TCCCT
1 TCCCT
83319689 TTCCCTCTAA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
38 1 0.03
39 36 0.97
ACGTcount: A:0.10, C:0.57, G:0.02, T:0.31
Consensus pattern (39 bp):
TCCCTCACCCTACTCCACTTCTCTACCTCTCTCCCACCA
Found at i:83321153 original size:30 final size:29
Alignment explanation
Indices: 83321079--83321161 Score: 89
Period size: 30 Copynumber: 2.8 Consensus size: 29
83321069 AATCTCAAAG
83321079 TTATATATTAATTTTGATTTAAAGTGAAAT
1 TTATATATTAATTTTGATTT-AAGTGAAAT
* *
83321109 TT-TGTATTTAAATTTTGATTT-TGTGTAAAT
1 TTATATA-TT-AATTTTGATTTAAGTG-AAAT
83321139 TTATATATATAATTTTGATTTAA
1 TTATATAT-TAATTTTGATTTAA
83321162 TGCAATTCTC
Statistics
Matches: 43, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
29 6 0.14
30 22 0.51
31 15 0.35
ACGTcount: A:0.35, C:0.00, G:0.10, T:0.55
Consensus pattern (29 bp):
TTATATATTAATTTTGATTTAAGTGAAAT
Found at i:83321999 original size:22 final size:22
Alignment explanation
Indices: 83321976--83322063 Score: 113
Period size: 22 Copynumber: 4.0 Consensus size: 22
83321966 ATTTTTTATT
* * *
83321976 ATATAACATATCAGAGAATGTT
1 ATATAACATATCAGAGCATATC
**
83321998 ATATAACATATTGGAGCATATC
1 ATATAACATATCAGAGCATATC
*
83322020 ATATAACATATCGGAGCATATC
1 ATATAACATATCAGAGCATATC
*
83322042 ATATAACATATCAGAACATATC
1 ATATAACATATCAGAGCATATC
83322064 CTACTATCAT
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 58 1.00
ACGTcount: A:0.44, C:0.15, G:0.11, T:0.30
Consensus pattern (22 bp):
ATATAACATATCAGAGCATATC
Found at i:83327267 original size:278 final size:280
Alignment explanation
Indices: 83326599--83327714 Score: 2042
Period size: 281 Copynumber: 4.0 Consensus size: 280
83326589 AATTGTTTTT
* * * *
83326599 ATTTTGTATAATATATTGTTCAAATAAATTCACTTTTTTTGGTGAATTACAATATCAGGGCAAAG
1 ATTTTGTATAATATATTTTTCAAATAAATTCA-TTTTTTTGGTGAATTACAATAACAAGACAAAG
* * * **
83326664 CCTGAACAACAATCGTGACTAAAGCGACTCGAATCCAGGCTACACTTAGGACAATGAACACCCTT
65 CCTGAACAACAATCGTGACTAGAGCGACTCGAATCCAAGCTACACTTAGGAAAATGAACACTTTT
* *
83326729 GATCAATAGACCATCACATGGGGTCCAAATAAATTCACTTTGATCCAATGGGTCAAATTATTTTG
130 GATCAATAGGCCATCACATGGGGTCCAAATAAATTCACTTTGATCCAGTGGGTCAAATTATTTTG
83326794 ATTCTTACACTTGTCACCCATAAATATAAATAATAACATTCAAATTTTTTTTTAAAAAAAAAAGT
195 ATTCTTACACTTGTCACCCATAAATATAAATAATAACATTCAAATTTTTTTTT-AAAAAAAAAGT
83326859 CATTTTAGTCTAATTAAAAGTC
259 CATTTTAGTCTAATTAAAAGTC
83326881 ATTTTGTATAATATATTTTTCAAATAAATTCATTTTTTTGGTGAATTACAATAACAAGACAAAGC
1 ATTTTGTATAATATATTTTTCAAATAAATTCATTTTTTTGGTGAATTACAATAACAAGACAAAGC
83326946 CTGAACAACAATCGTGACTAGAGCGACTCGAATCCAAGCTACACTTAGGAAAATGAACACTTTTG
66 CTGAACAACAATCGTGACTAGAGCGACTCGAATCCAAGCTACACTTAGGAAAATGAACACTTTTG
83327011 ATCAATAGGCCATCACATGGGGTCCAAATAAATTCACTTTGATCCAGTGGGTCAAATTATTTTGA
131 ATCAATAGGCCATCACATGGGGTCCAAATAAATTCACTTTGATCCAGTGGGTCAAATTATTTTGA
* *
83327076 TTCTTACACTTGTCACCCATAAATATAAATAGTAATATTCAAA-TTTTTTTT-AAAAAAAAGTCA
196 TTCTTACACTTGTCACCCATAAATATAAATAATAACATTCAAATTTTTTTTTAAAAAAAAAGTCA
83327139 TTTTAGTCTAATTAAAAGTC
261 TTTTAGTCTAATTAAAAGTC
83327159 ATTTTGTATAATATATTTTTCAAATAAATTCATTTTTTTGGTGAATTACAATAACAAGACAAAGC
1 ATTTTGTATAATATATTTTTCAAATAAATTCATTTTTTTGGTGAATTACAATAACAAGACAAAGC
83327224 CTGAACAACAATCGTGACTAGAGCGACTCGAATCCAAGCTACACTTAGGAAAATGAACACTTTTG
66 CTGAACAACAATCGTGACTAGAGCGACTCGAATCCAAGCTACACTTAGGAAAATGAACACTTTTG
83327289 ATCAATAGGCCATCACATGGGGTCCAAATAAATTCACTTTGATCCAGTGGGTCAAATTATTTTGA
131 ATCAATAGGCCATCACATGGGGTCCAAATAAATTCACTTTGATCCAGTGGGTCAAATTATTTTGA
83327354 TTCTTACACTTGTCACCCATAAATATAAATAATAACATTCAAATTTTTTTTTAAAAAAAAAAGTC
196 TTCTTACACTTGTCACCCATAAATATAAATAATAACATTCAAATTTTTTTTT-AAAAAAAAAGTC
83327419 ATTTTAGTCTAATTAAAAGTC
260 ATTTTAGTCTAATTAAAAGTC
83327440 ATTTTGTATAATATATTTTTCAAATAAATTCATTTTTTTGGTGAATTACAATAACAAGACAAAGC
1 ATTTTGTATAATATATTTTTCAAATAAATTCATTTTTTTGGTGAATTACAATAACAAGACAAAGC
83327505 CTGAACAACAATCGTGACTAGAGCGACTCGAATCCAAGCTACACTTAGGAAAATGAACACTTTTG
66 CTGAACAACAATCGTGACTAGAGCGACTCGAATCCAAGCTACACTTAGGAAAATGAACACTTTTG
83327570 ATCAATAGGCCATCACATGGGGTCCAAATAAATTCACTTTGATCCAGTGGGTCAAATTATTTTGA
131 ATCAATAGGCCATCACATGGGGTCCAAATAAATTCACTTTGATCCAGTGGGTCAAATTATTTTGA
* *
83327635 TTCTTACACTTGTCACCCATAAATATAAATAGTAATATTCAAA-TTTTTTTT-AAAAAAAAGTCA
196 TTCTTACACTTGTCACCCATAAATATAAATAATAACATTCAAATTTTTTTTTAAAAAAAAAGTCA
83327698 TTTTAGTCTAATTAAAA
261 TTTTAGTCTAATTAAAA
83327715 AATTGTCCGC
Statistics
Matches: 814, Mismatches: 17, Indels: 10
0.97 0.02 0.01
Matches are distributed among these distances:
278 297 0.36
279 8 0.01
280 16 0.02
281 462 0.57
282 31 0.04
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.33
Consensus pattern (280 bp):
ATTTTGTATAATATATTTTTCAAATAAATTCATTTTTTTGGTGAATTACAATAACAAGACAAAGC
CTGAACAACAATCGTGACTAGAGCGACTCGAATCCAAGCTACACTTAGGAAAATGAACACTTTTG
ATCAATAGGCCATCACATGGGGTCCAAATAAATTCACTTTGATCCAGTGGGTCAAATTATTTTGA
TTCTTACACTTGTCACCCATAAATATAAATAATAACATTCAAATTTTTTTTTAAAAAAAAAGTCA
TTTTAGTCTAATTAAAAGTC
Found at i:83327689 original size:559 final size:560
Alignment explanation
Indices: 83326599--83327714 Score: 2126
Period size: 559 Copynumber: 2.0 Consensus size: 560
83326589 AATTGTTTTT
* * *
83326599 ATTTTGTATAATATATTGTTCAAATAAATTCACTTTTTTTGGTGAATTACAATATCAGGGCAAAG
1 ATTTTGTATAATATATTGTTCAAATAAATTCACTTTTTTTGGTGAATTACAATAACAAGACAAAG
* *
83326664 CCTGAACAACAATCGTGACTAAAGCGACTCGAATCCAGGCTACACTTAGGACAATGAACACCCTT
66 CCTGAACAACAATCGTGACTAAAGCGACTCGAATCCAAGCTACACTTAGGAAAATGAACACCCTT
83326729 GATCAATAGACCATCACATGGGGTCCAAATAAATTCACTTTGATCCAATGGGTCAAATTATTTTG
131 GATCAATAGACCATCACATGGGGTCCAAATAAATTCACTTTGATCCAATGGGTCAAATTATTTTG
83326794 ATTCTTACACTTGTCACCCATAAATATAAATAATAACATTCAAATTTTTTTTTAAAAAAAAAAGT
196 ATTCTTACACTTGTCACCCATAAATATAAATAATAACATTCAAATTTTTTTTTAAAAAAAAAAGT
83326859 CATTTTAGTCTAATTAAAAGTCATTTTGTATAATATATTTTTCAAATAAATTCATTTTTTTGGTG
261 CATTTTAGTCTAATTAAAAGTCATTTTGTATAATATATTTTTCAAATAAATTCATTTTTTTGGTG
83326924 AATTACAATAACAAGACAAAGCCTGAACAACAATCGTGACTAGAGCGACTCGAATCCAAGCTACA
326 AATTACAATAACAAGACAAAGCCTGAACAACAATCGTGACTAGAGCGACTCGAATCCAAGCTACA
83326989 CTTAGGAAAATGAACACTTTTGATCAATAGGCCATCACATGGGGTCCAAATAAATTCACTTTGAT
391 CTTAGGAAAATGAACACTTTTGATCAATAGGCCATCACATGGGGTCCAAATAAATTCACTTTGAT
83327054 CCAGTGGGTCAAATTATTTTGATTCTTACACTTGTCACCCATAAATATAAATAGTAATATTCAAA
456 CCAGTGGGTCAAATTATTTTGATTCTTACACTTGTCACCCATAAATATAAATAGTAATATTCAAA
83327119 TTTTTTTTAAAAAAAAGTCATTTTAGTCTAATTAAAAGTC
521 TTTTTTTTAAAAAAAAGTCATTTTAGTCTAATTAAAAGTC
*
83327159 ATTTTGTATAATATATTTTTCAAATAAATTCA-TTTTTTTGGTGAATTACAATAACAAGACAAAG
1 ATTTTGTATAATATATTGTTCAAATAAATTCACTTTTTTTGGTGAATTACAATAACAAGACAAAG
* **
83327223 CCTGAACAACAATCGTGACTAGAGCGACTCGAATCCAAGCTACACTTAGGAAAATGAACACTTTT
66 CCTGAACAACAATCGTGACTAAAGCGACTCGAATCCAAGCTACACTTAGGAAAATGAACACCCTT
* *
83327288 GATCAATAGGCCATCACATGGGGTCCAAATAAATTCACTTTGATCCAGTGGGTCAAATTATTTTG
131 GATCAATAGACCATCACATGGGGTCCAAATAAATTCACTTTGATCCAATGGGTCAAATTATTTTG
83327353 ATTCTTACACTTGTCACCCATAAATATAAATAATAACATTCAAATTTTTTTTTAAAAAAAAAAGT
196 ATTCTTACACTTGTCACCCATAAATATAAATAATAACATTCAAATTTTTTTTTAAAAAAAAAAGT
83327418 CATTTTAGTCTAATTAAAAGTCATTTTGTATAATATATTTTTCAAATAAATTCATTTTTTTGGTG
261 CATTTTAGTCTAATTAAAAGTCATTTTGTATAATATATTTTTCAAATAAATTCATTTTTTTGGTG
83327483 AATTACAATAACAAGACAAAGCCTGAACAACAATCGTGACTAGAGCGACTCGAATCCAAGCTACA
326 AATTACAATAACAAGACAAAGCCTGAACAACAATCGTGACTAGAGCGACTCGAATCCAAGCTACA
83327548 CTTAGGAAAATGAACACTTTTGATCAATAGGCCATCACATGGGGTCCAAATAAATTCACTTTGAT
391 CTTAGGAAAATGAACACTTTTGATCAATAGGCCATCACATGGGGTCCAAATAAATTCACTTTGAT
83327613 CCAGTGGGTCAAATTATTTTGATTCTTACACTTGTCACCCATAAATATAAATAGTAATATTCAAA
456 CCAGTGGGTCAAATTATTTTGATTCTTACACTTGTCACCCATAAATATAAATAGTAATATTCAAA
83327678 TTTTTTTTAAAAAAAAGTCATTTTAGTCTAATTAAAA
521 TTTTTTTTAAAAAAAAGTCATTTTAGTCTAATTAAAA
83327715 AATTGTCCGC
Statistics
Matches: 545, Mismatches: 11, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
559 514 0.94
560 31 0.06
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.33
Consensus pattern (560 bp):
ATTTTGTATAATATATTGTTCAAATAAATTCACTTTTTTTGGTGAATTACAATAACAAGACAAAG
CCTGAACAACAATCGTGACTAAAGCGACTCGAATCCAAGCTACACTTAGGAAAATGAACACCCTT
GATCAATAGACCATCACATGGGGTCCAAATAAATTCACTTTGATCCAATGGGTCAAATTATTTTG
ATTCTTACACTTGTCACCCATAAATATAAATAATAACATTCAAATTTTTTTTTAAAAAAAAAAGT
CATTTTAGTCTAATTAAAAGTCATTTTGTATAATATATTTTTCAAATAAATTCATTTTTTTGGTG
AATTACAATAACAAGACAAAGCCTGAACAACAATCGTGACTAGAGCGACTCGAATCCAAGCTACA
CTTAGGAAAATGAACACTTTTGATCAATAGGCCATCACATGGGGTCCAAATAAATTCACTTTGAT
CCAGTGGGTCAAATTATTTTGATTCTTACACTTGTCACCCATAAATATAAATAGTAATATTCAAA
TTTTTTTTAAAAAAAAGTCATTTTAGTCTAATTAAAAGTC
Found at i:83333580 original size:24 final size:26
Alignment explanation
Indices: 83333553--83333601 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
83333543 CTTGTTTTAA
* *
83333553 TATTTG-TTT-TTATGTTTTTAAATG
1 TATTTGATTTATTATATTTTAAAATG
83333577 TATTTGATTTATTATATTTTAAAAT
1 TATTTGATTTATTATATTTTAAAAT
83333602 TTTTTATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
25 3 0.14
26 12 0.57
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (26 bp):
TATTTGATTTATTATATTTTAAAATG
Found at i:83334864 original size:16 final size:16
Alignment explanation
Indices: 83334843--83334884 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
83334833 TTTATTCAAA
*
83334843 AATAATAATAACATTC
1 AATAATAATAAAATTC
*
83334859 AATAATATTAAAATTC
1 AATAATAATAAAATTC
*
83334875 ATTAATAATA
1 AATAATAATA
83334885 TTATGACTTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (16 bp):
AATAATAATAAAATTC
Found at i:83344659 original size:30 final size:30
Alignment explanation
Indices: 83344625--83344697 Score: 128
Period size: 31 Copynumber: 2.4 Consensus size: 30
83344615 ATCATACTTT
83344625 AATTGAATTTCTGCACTCATTATAACAAAA
1 AATTGAATTTCTGCACTCATTATAACAAAA
*
83344655 AATTGAATTTTCTGCACTCATTATAACAAAT
1 AATTGAA-TTTCTGCACTCATTATAACAAAA
83344686 AATTGAATTTCT
1 AATTGAATTTCT
83344698 ATTCAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
30 12 0.29
31 29 0.71
ACGTcount: A:0.40, C:0.15, G:0.07, T:0.38
Consensus pattern (30 bp):
AATTGAATTTCTGCACTCATTATAACAAAA
Found at i:83347645 original size:50 final size:48
Alignment explanation
Indices: 83347580--83347891 Score: 256
Period size: 50 Copynumber: 6.6 Consensus size: 48
83347570 GAGGCCGACC
83347580 CCATGTCCCAGACATGGTCTTACACTAGCTTTCACATATTCGTGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGC-TTCACAT-TTCGTGCCGATG
* * * *
83347630 CCATGTCCCAAACATGGTCTTATACTAGCTTTCACATATCCGTGCTGATG
1 CCATGTCCCAGACATGGTCTTACACTAGC-TTCACAT-TTCGTGCCGATG
* * *
83347680 CCATGTCCCAGACATGGTCTTACACT-G--GCACATCTCGTAGTC-ATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTTCACATTTCGT-GCCGATG
* * * *
83347725 -CATGTCCCAGACAT-ATCTTACACTTGCTT-ATATTTCGAGGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTTCACATTTCG-TGCCGATG
* * * * *
83347771 -CATGTCCCAGACAT-GTCTTACACTAGC-TCTCGTCTCAATGCCAATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTTCACATTTC-GTGCCGATG
* * *
83347817 CCATGTCCCAGACATGGTCTTACACT-GGTTCTCATAAT-GTGGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTTCACAT-TTCGT-GCCGATG
* *
83347865 -CATGTCCCAAACAT-ATCTTACACTAGC
1 CCATGTCCCAGACATGGTCTTACACTAGC
83347892 GCACAAATAA
Statistics
Matches: 214, Mismatches: 34, Indels: 31
0.77 0.12 0.11
Matches are distributed among these distances:
43 9 0.04
44 15 0.07
45 15 0.07
46 52 0.24
47 30 0.14
48 21 0.10
49 2 0.01
50 70 0.33
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.29
Consensus pattern (48 bp):
CCATGTCCCAGACATGGTCTTACACTAGCTTCACATTTCGTGCCGATG
Found at i:83347781 original size:46 final size:45
Alignment explanation
Indices: 83347722--83347888 Score: 140
Period size: 46 Copynumber: 3.6 Consensus size: 45
83347712 TCTCGTAGTC
*
83347722 ATGCATGTCCCAGACATATCTTACACTTGCTTATATTTCGAGGCCG
1 ATGCATGTCCCAGACATATCTTACACTTGCTT-TATATCGAGGCCG
* * ** * * * *
83347768 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCA
1 ATGCATGTCCCAGACATATCTTACACTTGCT-TTATATCGAGGCCG
* * *
83347814 ATGCCATGTCCCAGACATGGTCTTACAC-TGGTTCTCATAAT-GTGGCCG
1 ATG-CATGTCCCAGACAT-ATCTTACACTTGCTT-T-AT-ATCGAGGCCG
*
83347862 ATGCATGTCCCAAACATATCTTACACT
1 ATGCATGTCCCAGACATATCTTACACT
83347889 AGCGCACAAA
Statistics
Matches: 95, Mismatches: 19, Indels: 13
0.75 0.15 0.10
Matches are distributed among these distances:
46 48 0.51
47 30 0.32
48 16 0.17
49 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.30
Consensus pattern (45 bp):
ATGCATGTCCCAGACATATCTTACACTTGCTTTATATCGAGGCCG
Found at i:83351491 original size:120 final size:121
Alignment explanation
Indices: 83351240--83351480 Score: 448
Period size: 121 Copynumber: 2.0 Consensus size: 121
83351230 TGGGCTGGTG
83351240 AAGTCAAAATTGAAAATAGGAATTAAAAAGATTAAATTGAGATATATGTATATATAATAAATTAT
1 AAGTCAAAATTGAAAATAGGAATTAAAAAGATTAAATTGAGATATATGTATATATAATAAATTAT
* *
83351305 TAAATAATTATTTAAATTGATAATAAAATATGAAATAAATTTTTATTTTTATTTAT
66 TAAATAATTATTTAAATTGATAATAAAACATGAAATAAATTTCTATTTTTATTTAT
*
83351361 AAGTCAAAATTGAAAATAGGAATTAAAGAGATTAAATTGAGATATATGTATATATAATAAA-TAT
1 AAGTCAAAATTGAAAATAGGAATTAAAAAGATTAAATTGAGATATATGTATATATAATAAATTAT
83351425 TAAATAATTATTTAAATTGATAATAAAACATGAAATAAATTTCTATTTTTATTTAT
66 TAAATAATTATTTAAATTGATAATAAAACATGAAATAAATTTCTATTTTTATTTAT
83351481 TTAGTTAAAT
Statistics
Matches: 117, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
120 57 0.49
121 60 0.51
ACGTcount: A:0.50, C:0.02, G:0.09, T:0.39
Consensus pattern (121 bp):
AAGTCAAAATTGAAAATAGGAATTAAAAAGATTAAATTGAGATATATGTATATATAATAAATTAT
TAAATAATTATTTAAATTGATAATAAAACATGAAATAAATTTCTATTTTTATTTAT
Found at i:83356527 original size:81 final size:80
Alignment explanation
Indices: 83356391--83356551 Score: 297
Period size: 81 Copynumber: 2.0 Consensus size: 80
83356381 GCCCTCAGTT
83356391 GTGCAGCTCTCAGCCCCCACCTTCTCTTGTCTCTCTCTCGCTTTGGCCTCAATTTCATCCAACAG
1 GTGCAGCTCTCAGCCCCCACCTTCTCTTGTCTCTCTCTCGCTTTGGCCTCAATTTCATCCAACAG
83356456 TATTCGGTCTCTTTCC
66 TATT-GGTCTCTTTCC
83356472 NGTGCAGCTCTCAG-CCCCACCTTCTCTTGTCTCTCTCTCGCTTTGGCCTCAATTTCATCCAACA
1 -GTGCAGCTCTCAGCCCCCACCTTCTCTTGTCTCTCTCTCGCTTTGGCCTCAATTTCATCCAACA
83356536 GTATTGGTCTCTTTCC
65 GTATTGGTCTCTTTCC
83356552 CTCTGTCTCC
Statistics
Matches: 79, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
80 11 0.14
81 55 0.70
82 13 0.16
ACGTcount: A:0.12, C:0.37, G:0.14, T:0.36
Consensus pattern (80 bp):
GTGCAGCTCTCAGCCCCCACCTTCTCTTGTCTCTCTCTCGCTTTGGCCTCAATTTCATCCAACAG
TATTGGTCTCTTTCC
Found at i:83358274 original size:13 final size:13
Alignment explanation
Indices: 83358258--83358307 Score: 75
Period size: 13 Copynumber: 3.9 Consensus size: 13
83358248 GATTTGTTTA
*
83358258 ATTAATTTATTTT
1 ATTAATTGATTTT
*
83358271 ATTAATTGATTTG
1 ATTAATTGATTTT
83358284 ATTAATTGATTTT
1 ATTAATTGATTTT
83358297 ATTAATT-ATTT
1 ATTAATTGATTT
83358308 ATCTAAAAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
12 4 0.12
13 30 0.88
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (13 bp):
ATTAATTGATTTT
Found at i:83360125 original size:18 final size:17
Alignment explanation
Indices: 83360106--83360141 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
83360096 GAAAACAATT
83360106 TTTTTAT-TATTTTTAA
1 TTTTTATATATTTTTAA
83360122 TTTTTATATATTTTT-A
1 TTTTTATATATTTTTAA
83360138 TTTT
1 TTTT
83360142 CCAAAAGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTTTATATATTTTTAA
Found at i:83360376 original size:59 final size:59
Alignment explanation
Indices: 83360305--83360419 Score: 212
Period size: 59 Copynumber: 1.9 Consensus size: 59
83360295 GCGTTTGACG
83360305 TTGGCAAGTGTTTGGCATCCAATAGGGAGTGTTTCAATCTCTGATCTAGGAGGGAAAGA
1 TTGGCAAGTGTTTGGCATCCAATAGGGAGTGTTTCAATCTCTGATCTAGGAGGGAAAGA
* *
83360364 TTGGCAAGTGTTTGGCATCCAATAGGGAGTGTTTCAATCTTTGATCTAGTAGGGAA
1 TTGGCAAGTGTTTGGCATCCAATAGGGAGTGTTTCAATCTCTGATCTAGGAGGGAA
83360420 TGAGACTTAT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
59 54 1.00
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.31
Consensus pattern (59 bp):
TTGGCAAGTGTTTGGCATCCAATAGGGAGTGTTTCAATCTCTGATCTAGGAGGGAAAGA
Found at i:83360416 original size:27 final size:27
Alignment explanation
Indices: 83360327--83360418 Score: 67
Period size: 27 Copynumber: 3.2 Consensus size: 27
83360317 TGGCATCCAA
*
83360327 TAGGGAGTGTTTCAATCTCTGATCTAG
1 TAGGGAGTGTTTCAATCTTTGATCTAG
* ** * * * *
83360354 GAGGGAAAGATTGGCAAGTGTTTGGCATCCAA
1 TAGGGAGTG-TT-TCAA-TCTTT-G-ATCTAG
83360386 TAGGGAGTGTTTCAATCTTTGATCTAG
1 TAGGGAGTGTTTCAATCTTTGATCTAG
83360413 TAGGGA
1 TAGGGA
83360419 ATGAGACTTA
Statistics
Matches: 45, Mismatches: 15, Indels: 10
0.64 0.21 0.14
Matches are distributed among these distances:
27 16 0.36
28 3 0.07
29 7 0.16
30 6 0.13
31 3 0.07
32 10 0.22
ACGTcount: A:0.26, C:0.12, G:0.30, T:0.32
Consensus pattern (27 bp):
TAGGGAGTGTTTCAATCTTTGATCTAG
Found at i:83369084 original size:18 final size:17
Alignment explanation
Indices: 83369056--83369089 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
83369046 GTTTGTCTTC
83369056 TTTTCTTTTCTTTTCCT
1 TTTTCTTTTCTTTTCCT
83369073 TTTTCTTTTTCTTTTCC
1 TTTTC-TTTTCTTTTCC
83369090 GAACTTTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTTCTTTTCTTTTCCT
Found at i:83374395 original size:4 final size:4
Alignment explanation
Indices: 83374386--83377370 Score: 4358
Period size: 4 Copynumber: 745.8 Consensus size: 4
83374376 GAGAAGTGAT
83374386 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
83374434 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
83374482 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
83374530 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
83374578 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
83374626 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
83374674 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
83374722 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
83374770 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
83374818 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
83374866 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
83374914 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
83374962 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
83375010 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
83375058 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
83375106 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
83375154 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
83375202 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
83375250 ATAC ATAC ATAC ATAC GTAC ATAC ATAC GTAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
83375298 ATAT ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAT ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
83375346 ATAC ATAC ATAC ATAC ATAC GTAC ATAC ATAC CTAC GTAC GTAC GTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
83375394 GTAC ATAC ATAC ATAC ATAC ATAC ATAC GTAC ATAC GTAC ATAC GTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
83375442 ATAC GTAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC GTAC ATAC CTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
83375490 ATAC ATAC ATAC ATAC TTAC ATAC GTAC GTAC GTAC GTAC GTAC GTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * **
83375538 GTAC ATAC ATAC ATAC ATAT GTAC GTAC GTAC GTAC ATTT ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
83375586 ATAC ATAC ATAC ATAT GTAC ATAC ATAC ATAC GTAC ATAC GTAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
83375634 ATAC ATAC ATAC ATAC ATAC ATAC GTAC GTAC GTAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
83375682 ATAC GTAC ATAC ATAC ATAC ATAC ATAC ATAC GTAC ATAC CTAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
83375730 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
83375778 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
83375826 ATAC ATAC ATAC ATAC GTAC GTAC ATAC ATAC CTAC ATAC ATAC CTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
83375874 ATAC ATAC ATAC ATAC ATAC GTATAC GTAC GTAC GTAC GTAC GTAC ATAC
1 ATAC ATAC ATAC ATAC ATAC --ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
83375924 ATAC ATAC ATAC ATAC ATAC GTATAC GTAC GTAC GTAC GTAC GTAA ATAC
1 ATAC ATAC ATAC ATAC ATAC --ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
83375974 ATAC ATAC ATAT ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
83376022 ATAT ATAC GTAC GTAC ATAC ATAC ATAC GTAC ATAC GTAC ATAC GTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
83376070 ATAC ATAC ATAT ATAC ATAT ATAC ATAC ATAC GTAC ATAC GTAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
83376118 GTAC ATAC ATAC ATAC ATAC ATAT ATAC ATAC GTAC ATAC CTAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
83376166 ATAC ATAA ATAC ATAC ATAC GTAC GTAC ATAC GTAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
83376214 GTAC ATAC ATAC ATAC ATAC ATAT ATAC ATAC GTAC ATAC CTAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
83376262 ATAC ATAC ATAC ATAC ATAC GTAC GTAC ATAC GTAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
83376310 GTAC ATAC GTAC ATAC ATAC ATAC ATAT GTAC ATAC GTAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
83376358 ATAC ATAC ATAC GTAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
83376406 ATAC ATAC ATAC CTAT ATAC ATAC ATAC ATAT GTAC GTAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
83376454 ATAC ATAC ATAC ATAC ACAC ATAC ATAT GTAC ATAC ATAC ATAC GTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
83376502 GTAC GTAC GTAC ATAC ATAC ATAC ATAC ATAC ATAC ACAC ATAC ATAT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
83376550 GTAC ATAC ATAC ATAC GTAC GTAC GTAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
83376598 ATAC ACAC ATAC ATAT GTAC ATAC ATAC ATAC GTAC GTAC GTAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
83376646 ATAC ATAC ATAC ATAC ATAC AT-- ATAC GTAC ATAC ATAC GTAT ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
83376692 ATAC ATAC ATAC ATAC ATAC ATAC ATAC GTAC ATAC GTAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
83376740 ATAC ATAC ATAC GTAC ATAC ATAC ATAC ATAC ATAC CTAC GTAC ATAT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
83376788 GTAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ACAC ATAC ATAT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
83376836 GTAC ATAC ATAC ATAC GTAC GTAC GTAC GTAC GTAC GTAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
83376884 ATAC ATAC ATAC ATAC ATATGT ATAC GTAC GTAC GTAC GTAC GTAC ATAC
1 ATAC ATAC ATAC ATAC ATA--C ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
83376934 ATAC ATAC ATAC ATAC ATAC ATAC ATAT ATAT ATAC GTAC ATAG ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
83376982 ATAC GTAC ATAC ATAC GTAC ATAC ATAC ATAC ATAC ATAC GTAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
83377030 ATAC GTAC ATAC ATAC ATAC ATAC ATAC ATAC ATAA ATAT ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
83377078 ATAC AT-C ATAC ATAC AT-C ATAC ATAC GTAC ATAC ATAC GTAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
83377124 ATAC GTAC ATAC ATAC GTAC ATAC GTAC GTAC ATAC GTAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
83377172 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
83377220 ATAC ATAC ATAC ATAC GTAT ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
83377268 ATAC GTAC ATAC ATAC GTAC ATAC GTAC GTAC ATAC ATAC GTAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
83377316 ATAC GTAC ATAC GTAC ATAC ATAC GTAC ATAC GTAC GTAC ATAC GTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
83377364 GTAC ATA
1 ATAC ATA
83377371 ATATTTACAT
Statistics
Matches: 2732, Mismatches: 239, Indels: 20
0.91 0.08 0.01
Matches are distributed among these distances:
2 2 0.00
3 6 0.00
4 2713 0.99
6 11 0.00
ACGTcount: A:0.45, C:0.24, G:0.04, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:83379951 original size:16 final size:14
Alignment explanation
Indices: 83379918--83379955 Score: 51
Period size: 16 Copynumber: 2.6 Consensus size: 14
83379908 GGTGTCAAAT
83379918 TAAAT-TAATTAAC
1 TAAATGTAATTAAC
83379931 TAAATGTAAGTTAACC
1 TAAATGTAA-TTAA-C
83379947 TAAATGTAA
1 TAAATGTAA
83379956 ATGAAATGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 5 0.23
14 3 0.14
15 4 0.18
16 10 0.45
ACGTcount: A:0.50, C:0.08, G:0.08, T:0.34
Consensus pattern (14 bp):
TAAATGTAATTAAC
Found at i:83382789 original size:4 final size:4
Alignment explanation
Indices: 83382780--83382811 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
83382770 AGAATAACCT
83382780 TAAC TAAC TAAC TAAC TAAC TAAC TAAC TAAC
1 TAAC TAAC TAAC TAAC TAAC TAAC TAAC TAAC
83382812 AAAACATAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
TAAC
Found at i:83389143 original size:21 final size:21
Alignment explanation
Indices: 83389117--83389157 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
83389107 AGACAAGCGA
* *
83389117 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
83389138 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
83389158 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:83404210 original size:14 final size:14
Alignment explanation
Indices: 83404191--83404236 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
83404181 GAAGATATTA
83404191 TTTTATTTATTTAG
1 TTTTATTTATTTAG
*
83404205 TTTTA-TTATTTAT
1 TTTTATTTATTTAG
*
83404218 TTTTATTAATTTAG
1 TTTTATTTATTTAG
*
83404232 CTTTA
1 TTTTA
83404237 GCCTATTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
13 12 0.44
14 15 0.56
ACGTcount: A:0.24, C:0.02, G:0.04, T:0.70
Consensus pattern (14 bp):
TTTTATTTATTTAG
Found at i:83404215 original size:13 final size:13
Alignment explanation
Indices: 83404191--83404236 Score: 56
Period size: 13 Copynumber: 3.4 Consensus size: 13
83404181 GAAGATATTA
83404191 TTTTATTTATTTAG
1 TTTTA-TTATTTAG
*
83404205 TTTTATTATTTAT
1 TTTTATTATTTAG
83404218 TTTTATTAATTTAG
1 TTTTATT-ATTTAG
*
83404232 CTTTA
1 TTTTA
83404237 GCCTATTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 14 0.50
14 14 0.50
ACGTcount: A:0.24, C:0.02, G:0.04, T:0.70
Consensus pattern (13 bp):
TTTTATTATTTAG
Found at i:83409382 original size:20 final size:21
Alignment explanation
Indices: 83409359--83409399 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
83409349 TTATTTTATT
83409359 TTATGTAGTTTTATT-ATTTA
1 TTATGTAGTTTTATTAATTTA
* *
83409379 TTATTTATTTTTATTAATTTA
1 TTATGTAGTTTTATTAATTTA
83409400 GCTTTAGCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (21 bp):
TTATGTAGTTTTATTAATTTA
Found at i:83409914 original size:17 final size:17
Alignment explanation
Indices: 83409892--83409926 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
83409882 TGGGTTGGAG
83409892 TCGTGTTTTCTGACAGT
1 TCGTGTTTTCTGACAGT
83409909 TCGTGTTTTCTGACAGT
1 TCGTGTTTTCTGACAGT
83409926 T
1 T
83409927 GGAGAAACGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.11, C:0.17, G:0.23, T:0.49
Consensus pattern (17 bp):
TCGTGTTTTCTGACAGT
Found at i:83417873 original size:46 final size:46
Alignment explanation
Indices: 83417821--83418131 Score: 340
Period size: 46 Copynumber: 6.8 Consensus size: 46
83417811 TTCTGAATTG
* *
83417821 AAATGTGTAAGACCATGGTTGAAAGACACCATGGCAATAAGATATA
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAAGATATA
* *
83417867 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAAGATATA
*
83417913 AAATATGTAAGACCATGGTTGAAAGATACCATGGCAACAAGATATA
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAAGATATA
* * * **
83417959 AAATGTGTAAGGCCATGGTTGAAAGATACCATGGTAACATGAT-GG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAAGATATA
* ** ** * *
83418004 GAATGAATAAGACCATGGTTGAAAGATACCATGGCAATGTA-ACATG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA-CAAGATATA
*** * * *
83418050 AAATGAACAAGACCATGGTTGAAAGATACCATGGCAATC-TGACAGA
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA-CAAGATATA
* * * *
83418096 AAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
83418132 TCATGTAAAA
Statistics
Matches: 228, Mismatches: 34, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
45 33 0.14
46 195 0.86
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAAGATATA
Found at i:83418150 original size:137 final size:137
Alignment explanation
Indices: 83417821--83418154 Score: 372
Period size: 137 Copynumber: 2.4 Consensus size: 137
83417811 TTCTGAATTG
* **
83417821 AAATGTGTAAGACCATGGTTGAAAGACACCATGGCAAT-AAGATATAAA-ATGTGTAAGACCATG
1 AAATGTGTAAGACCATGGTTGAAAGACACCATGGC-ATCATG-TA-AAAGATGAATAAGACCATG
* * **
83417884 GTTGAAAGATACCATGGCAACATGATATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCA
63 GTTGAAAGATACCATGGCAACATAACATGAAATATACAAGACCATGGTTGAAAGATACCATGGCA
* *
83417949 ACAAGATATA
128 ACAAGACAGA
* * * * ***
83417959 AAATGTGTAAGGCCATGGTTGAAAGATACCATGGTAACATG-ATGGGAATGAATAAGACCATGGT
1 AAATGTGTAAGACCATGGTTGAAAGACACCATGGCATCATGTAAAAG-ATGAATAAGACCATGGT
**
83418023 TGAAAGATACCATGGCAATGTAACATGAAATGA-ACAAGACCATGGTTGAAAGATACCATGGCAA
65 TGAAAGATACCATGGCAACATAACATGAAAT-ATACAAGACCATGGTTGAAAGATACCATGGCAA
*
83418087 TC-TGACAGA
129 -CAAGACAGA
* * * *
83418096 AAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATGTAAAAGATAAATAAGACC
1 AAATGTGTAAGACCATGGTTGAAAGACACCATGGCATCATGTAAAAGATGAATAAGACC
83418155 GTGGATAGGA
Statistics
Matches: 160, Mismatches: 30, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
136 1 0.01
137 121 0.76
138 38 0.24
ACGTcount: A:0.43, C:0.13, G:0.22, T:0.22
Consensus pattern (137 bp):
AAATGTGTAAGACCATGGTTGAAAGACACCATGGCATCATGTAAAAGATGAATAAGACCATGGTT
GAAAGATACCATGGCAACATAACATGAAATATACAAGACCATGGTTGAAAGATACCATGGCAACA
AGACAGA
Found at i:83418438 original size:16 final size:17
Alignment explanation
Indices: 83418417--83418449 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
83418407 ATGATGGAGC
83418417 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
83418433 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
83418450 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:83425213 original size:24 final size:24
Alignment explanation
Indices: 83425184--83425230 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
83425174 TGCTGTCCAG
*
83425184 TACATTGAAGATAGTAGTGCCGAA
1 TACATTGAAGATAGCAGTGCCGAA
83425208 TACATTGAAGATAGCAGTGCCGA
1 TACATTGAAGATAGCAGTGCCGA
83425231 GTCTTCTTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.23
Consensus pattern (24 bp):
TACATTGAAGATAGCAGTGCCGAA
Found at i:83427751 original size:21 final size:21
Alignment explanation
Indices: 83427727--83427782 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 21
83427717 TGAGATTGGT
83427727 TATTGTAGTGGTGAGATTAAA
1 TATTGTAGTGGTGAGATTAAA
**
83427748 TATTGTAGTAATGAGATTAAA
1 TATTGTAGTGGTGAGATTAAA
*
83427769 -AAT-TAGTGGTGAGA
1 TATTGTAGTGGTGAGA
83427783 CATGTGTGAC
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
19 9 0.30
20 2 0.07
21 19 0.63
ACGTcount: A:0.38, C:0.00, G:0.27, T:0.36
Consensus pattern (21 bp):
TATTGTAGTGGTGAGATTAAA
Found at i:83434857 original size:14 final size:14
Alignment explanation
Indices: 83434838--83434866 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
83434828 AAACAACTTG
83434838 AGACATACTCTGGT
1 AGACATACTCTGGT
83434852 AGACATACTCTGGT
1 AGACATACTCTGGT
83434866 A
1 A
83434867 TCTCCTTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (14 bp):
AGACATACTCTGGT
Found at i:83448361 original size:71 final size:71
Alignment explanation
Indices: 83448245--83448386 Score: 203
Period size: 71 Copynumber: 2.0 Consensus size: 71
83448235 CGCCTGGATG
* * * * *
83448245 CTGAACCAAGACTCTGAATACTTATTAACTTGCGCACGGAAACAACTGTACGCTAAGTATTTTAT
1 CTGAACCAAGACTCTAAATACCTATTAACCTGCGCACGAAAACAACCGTACGCTAAGTATTTTAT
83448310 ACTCAA
66 ACTCAA
* * * *
83448316 CTGAACCGAGACTCTAAATACCTATTAACCTGCGCATGAAAACAACCGTAGGCTGAGTATTTTAT
1 CTGAACCAAGACTCTAAATACCTATTAACCTGCGCACGAAAACAACCGTACGCTAAGTATTTTAT
83448381 ACTCAA
66 ACTCAA
83448387 TGGTATTATT
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
71 62 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (71 bp):
CTGAACCAAGACTCTAAATACCTATTAACCTGCGCACGAAAACAACCGTACGCTAAGTATTTTAT
ACTCAA
Found at i:83448624 original size:19 final size:20
Alignment explanation
Indices: 83448582--83448624 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
83448572 TCATGCTTTC
*
83448582 TATTCACATTTTCATATTCA
1 TATTCACATTTTCATAATCA
83448602 -ATTCACATTTTCA-AATCA
1 TATTCACATTTTCATAATCA
83448620 TATTC
1 TATTC
83448625 CAAATTCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.33, C:0.21, G:0.00, T:0.47
Consensus pattern (20 bp):
TATTCACATTTTCATAATCA
Found at i:83449012 original size:18 final size:18
Alignment explanation
Indices: 83448991--83449027 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
83448981 ACAATTCATA
83448991 TCACTTTCAATTTCAATT
1 TCACTTTCAATTTCAATT
*
83449009 TCACTTTCACTTTCAATT
1 TCACTTTCAATTTCAATT
83449027 T
1 T
83449028 TGATCACAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.51
Consensus pattern (18 bp):
TCACTTTCAATTTCAATT
Found at i:83449750 original size:15 final size:16
Alignment explanation
Indices: 83449730--83449763 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
83449720 AACCCTAGTT
*
83449730 TTTTCTT-TTTTTTTC
1 TTTTCTTCTTTCTTTC
83449745 TTTTCTTCTTTCTTTC
1 TTTTCTTCTTTCTTTC
83449761 TTT
1 TTT
83449764 CCCCTGTTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTTCTTCTTTCTTTC
Found at i:83458648 original size:13 final size:13
Alignment explanation
Indices: 83458630--83458654 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83458620 TATGTGATAT
83458630 GTGTGAAAATTTC
1 GTGTGAAAATTTC
83458643 GTGTGAAAATTT
1 GTGTGAAAATTT
83458655 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:83459859 original size:47 final size:47
Alignment explanation
Indices: 83459797--83459926 Score: 179
Period size: 47 Copynumber: 2.8 Consensus size: 47
83459787 GTGCAAATAA
* * * **
83459797 TACCTTGATTTGGCTATGGGCCATGATATAGGTATTTTGAGAGAAGT
1 TACCTTGATTTGGCTAAGGGCCATGGTATAGGTACTCCGAGAGAAGT
* * *
83459844 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGGGATAAGT
1 TACCTTGATTTGGCTAAGGGCCATGGTATAGGTACTCCGAGAGAAGT
*
83459891 TACCTTGATTTGGCTAAGGGCTATGGTATAGGTACT
1 TACCTTGATTTGGCTAAGGGCCATGGTATAGGTACT
83459927 TATCAAATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 74 1.00
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.34
Consensus pattern (47 bp):
TACCTTGATTTGGCTAAGGGCCATGGTATAGGTACTCCGAGAGAAGT
Found at i:83460865 original size:43 final size:43
Alignment explanation
Indices: 83460816--83460907 Score: 157
Period size: 43 Copynumber: 2.1 Consensus size: 43
83460806 GATACGGGCA
* *
83460816 TGTGTCTTAGCCGTGTGCGACACACGGTCATATTACACGGCTG
1 TGTGTCTCAGCCGTGTGCGACACACGGTCATATTACACGGCCG
*
83460859 TGTGTCTCAGTCGTGTGCGACACACGGTCATATTACACGGCCG
1 TGTGTCTCAGCCGTGTGCGACACACGGTCATATTACACGGCCG
83460902 TGTGTC
1 TGTGTC
83460908 CCTTAGGATA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.17, C:0.26, G:0.28, T:0.28
Consensus pattern (43 bp):
TGTGTCTCAGCCGTGTGCGACACACGGTCATATTACACGGCCG
Found at i:83462633 original size:6 final size:6
Alignment explanation
Indices: 83462622--83462663 Score: 57
Period size: 6 Copynumber: 6.8 Consensus size: 6
83462612 AATTTTCTTA
* *
83462622 AAATGG AAATGG AAATGG AAATGA AAATGA AAATGAG AAATG
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATG-G AAATG
83462664 TTTCATTTGC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
6 28 0.85
7 5 0.15
ACGTcount: A:0.57, C:0.00, G:0.26, T:0.17
Consensus pattern (6 bp):
AAATGG
Found at i:83462846 original size:31 final size:31
Alignment explanation
Indices: 83462787--83462846 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
83462777 TGAATTTATG
* * **
83462787 GTTTTTGAGCTATTTTTAAGTCTGAAAATAT
1 GTTTCTGAGCTATTTTTAAGCCCAAAAATAT
*
83462818 GTTTCTGAGTTATTTTTAAGCCCAAAAAT
1 GTTTCTGAGCTATTTTTAAGCCCAAAAAT
83462847 GAAATAAATC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.30, C:0.10, G:0.15, T:0.45
Consensus pattern (31 bp):
GTTTCTGAGCTATTTTTAAGCCCAAAAATAT
Found at i:83466059 original size:39 final size:40
Alignment explanation
Indices: 83466014--83466185 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
83466004 GCTCCTCGTT
* * *
83466014 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
83466054 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
83466093 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
83466133 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
83466173 CAAATGCCTTCGG
1 CAAATGCCTTCGG
83466186 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:83466114 original size:40 final size:39
Alignment explanation
Indices: 83466016--83466238 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
83466006 TCCTCGTTCA
* * * *
83466016 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
83466055 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
83466094 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
83466134 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
83466174 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
83466215 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
83466239 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:83466198 original size:80 final size:79
Alignment explanation
Indices: 83466014--83466238 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
83466004 GCTCCTCGTT
* * * * *
83466014 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
83466078 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
83466093 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
83466158 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
83466173 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
83466237 GA
63 GA
83466239 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:83466247 original size:41 final size:41
Alignment explanation
Indices: 83466170--83466247 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
83466160 TTTGTATCTC
* * *
83466170 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
83466211 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
83466248 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:83480257 original size:17 final size:17
Alignment explanation
Indices: 83480248--83480341 Score: 61
Period size: 17 Copynumber: 5.5 Consensus size: 17
83480238 AATATTTTAA
83480248 TAAATTTAATATTAAAT
1 TAAATTTAATATTAAAT
**
83480265 TAAATTTAATACTTATCT
1 TAAATTTAATA-TTAAAT
* **
83480283 T-AA--TAGTATTTTAT
1 TAAATTTAATATTAAAT
*
83480297 T-AATTTAATATTAAAG
1 TAAATTTAATATTAAAT
83480313 TAATTATCTTAATATTAAAT
1 TAA--AT-TTAATATTAAAT
*
83480333 TTAATTTAA
1 TAAATTTAA
83480342 CAAGATAAAT
Statistics
Matches: 59, Mismatches: 11, Indels: 14
0.70 0.13 0.17
Matches are distributed among these distances:
14 7 0.12
15 4 0.07
16 8 0.14
17 18 0.31
18 7 0.12
19 2 0.03
20 13 0.22
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.50
Consensus pattern (17 bp):
TAAATTTAATATTAAAT
Found at i:83481573 original size:31 final size:30
Alignment explanation
Indices: 83481516--83481574 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
83481506 GTAAATACTC
* *
83481516 AAAATTTGAGGGATTAAAGTGTAAATATGA
1 AAAAGTTGAGGGATTAAAGTGAAAATATGA
83481546 AAAAGTTGAAGGGA-TAATAGTGAAAATAT
1 AAAAGTTG-AGGGATTAA-AGTGAAAATAT
83481575 TTTAAGGGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 10 0.40
31 15 0.60
ACGTcount: A:0.49, C:0.00, G:0.24, T:0.27
Consensus pattern (30 bp):
AAAAGTTGAGGGATTAAAGTGAAAATATGA
Found at i:83489808 original size:19 final size:21
Alignment explanation
Indices: 83489765--83489808 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
83489755 TCGGAAAATA
*
83489765 ATTTTTGAAAAATAGATTGAT
1 ATTTTTGAAAAATAAATTGAT
83489786 -TTTTTGAAAAA-AAATT-AT
1 ATTTTTGAAAAATAAATTGAT
83489804 ATTTT
1 ATTTT
83489809 ATGATGTGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 2 0.10
19 8 0.38
20 11 0.52
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.48
Consensus pattern (21 bp):
ATTTTTGAAAAATAAATTGAT
Found at i:83490851 original size:18 final size:19
Alignment explanation
Indices: 83490815--83490853 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
83490805 ATATAAATAA
83490815 TATTAAAATATTAAAAATT
1 TATTAAAATATTAAAAATT
83490834 TATTAAAA-A-TAGAAAATT
1 TATTAAAATATTA-AAAATT
83490852 TA
1 TA
83490854 AAAAATTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 2 0.11
18 9 0.47
19 8 0.42
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (19 bp):
TATTAAAATATTAAAAATT
Found at i:83490888 original size:19 final size:18
Alignment explanation
Indices: 83490799--83490989 Score: 85
Period size: 19 Copynumber: 10.2 Consensus size: 18
83490789 GAAAATTATT
83490799 TTAAAAATATA-AATAATA
1 TTAAAAATATATAA-AATA
83490817 TT-AAAATAT-TAAAA-A
1 TTAAAAATATATAAAATA
*
83490832 TTTATTAAAA-ATAGAAAAT-
1 -TTA--AAAATATATAAAATA
*
83490851 TTAAAAAATTTATACAAAACTA
1 TT-AAAAA--TATATAAAA-TA
*
83490873 TTAAAAATATATAAAAAA
1 TTAAAAATATATAAAATA
* **
83490891 GTAAATTTTATTATAAAATA
1 TTAAA-AATA-TATAAAATA
*
83490911 -TAAAAATATACAAAATTA
1 TTAAAAATATATAAAA-TA
* *
83490929 TTAAAAATTTATAAAAAAA
1 TTAAAAATATAT-AAAATA
83490948 TCATAAAAATATAATAAACAT-
1 T--TAAAAATAT-ATAAA-ATA
*
83490969 TTAAAAAT-TATAAAAAA
1 TTAAAAATATATAAAATA
83490986 TTAA
1 TTAA
83490990 TATAAAAGAT
Statistics
Matches: 133, Mismatches: 17, Indels: 47
0.68 0.09 0.24
Matches are distributed among these distances:
15 1 0.01
16 5 0.04
17 28 0.21
18 16 0.12
19 41 0.31
20 19 0.14
21 18 0.14
22 5 0.04
ACGTcount: A:0.63, C:0.03, G:0.01, T:0.33
Consensus pattern (18 bp):
TTAAAAATATATAAAATA
Found at i:83490911 original size:29 final size:28
Alignment explanation
Indices: 83490862--83490946 Score: 93
Period size: 28 Copynumber: 3.0 Consensus size: 28
83490852 TAAAAAATTT
*
83490862 ATACAAAACTATTAAAAATATATAAAAA
1 ATACAAAATTATTAAAAATATATAAAAA
** *
83490890 AGTA-AATTTTATTATAAAATATA-AAAAT
1 A-TACAAAATTATTA-AAAATATATAAAAA
*
83490918 ATACAAAATTATTAAAAATTTATAAAAA
1 ATACAAAATTATTAAAAATATATAAAAA
83490946 A
1 A
83490947 ATCATAAAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
27 9 0.20
28 26 0.58
29 10 0.22
ACGTcount: A:0.64, C:0.04, G:0.01, T:0.32
Consensus pattern (28 bp):
ATACAAAATTATTAAAAATATATAAAAA
Found at i:83490996 original size:11 final size:10
Alignment explanation
Indices: 83490912--83490988 Score: 56
Period size: 11 Copynumber: 7.8 Consensus size: 10
83490902 TATAAAATAT
83490912 AAAAA-TATA
1 AAAAATTATA
*
83490921 CAAAATTATTA
1 AAAAATTA-TA
*
83490932 AAAATTTATAA
1 AAAAATTAT-A
*
83490943 AAAAATCAT-
1 AAAAATTATA
83490952 AAAAA-TATA
1 AAAAATTATA
83490961 ATAAACATT-T-
1 A-AAA-ATTATA
83490971 AAAAATTATA
1 AAAAATTATA
83490981 AAAAATTA
1 AAAAATTA
83490989 ATATAAAAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 17
0.70 0.08 0.22
Matches are distributed among these distances:
8 5 0.09
9 14 0.26
10 15 0.28
11 18 0.34
12 1 0.02
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (10 bp):
AAAAATTATA
Found at i:83491013 original size:39 final size:38
Alignment explanation
Indices: 83490905--83491017 Score: 97
Period size: 40 Copynumber: 2.9 Consensus size: 38
83490895 ATTTTATTAT
* **
83490905 AAAAT-ATAAAAATATACAAAATTATTAAAAATTTATAAA
1 AAAATAATAAAAAGATA-AAAAACATTAAAAA-TTATAAA
* * *
83490944 AAAATCATAAAAATATAATAAACATTTAAAAATTATAAA
1 AAAATAATAAAAAGATAAAAAACA-TTAAAAATTATAAA
*
83490983 AAATTAATATAAAAGATAAAAATACA-T-AAAATTAT
1 AAAATAATA-AAAAGATAAAAA-ACATTAAAAATTAT
83491018 TAAATTTCTA
Statistics
Matches: 63, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
38 8 0.13
39 24 0.38
40 28 0.44
41 3 0.05
ACGTcount: A:0.66, C:0.04, G:0.01, T:0.29
Consensus pattern (38 bp):
AAAATAATAAAAAGATAAAAAACATTAAAAATTATAAA
Found at i:83493148 original size:21 final size:21
Alignment explanation
Indices: 83493119--83493164 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
83493109 GTGTTTTACT
* *
83493119 TTCTTTTTAGCTCTTTCGAGG
1 TTCTATTTAGCTCTTTCGAGC
83493140 TTCTATTTAGCTCTTTCGAGC
1 TTCTATTTAGCTCTTTCGAGC
83493161 TTCT
1 TTCT
83493165 GTTCAATTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.11, C:0.22, G:0.15, T:0.52
Consensus pattern (21 bp):
TTCTATTTAGCTCTTTCGAGC
Found at i:83493175 original size:21 final size:21
Alignment explanation
Indices: 83493151--83493196 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
83493141 TCTATTTAGC
* *
83493151 TCTTTCGAGCTTCTGTTCAAT
1 TCTTGCGAGCTTCTGTTCAAA
83493172 TCTTGCGAGCTTCTGTTCAAA
1 TCTTGCGAGCTTCTGTTCAAA
83493193 TCTT
1 TCTT
83493197 ATAAGTTTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.15, C:0.24, G:0.15, T:0.46
Consensus pattern (21 bp):
TCTTGCGAGCTTCTGTTCAAA
Found at i:83493206 original size:21 final size:21
Alignment explanation
Indices: 83493161--83493314 Score: 112
Period size: 21 Copynumber: 7.3 Consensus size: 21
83493151 TCTTTCGAGC
* ** *
83493161 TTCTGTTCAATTCTTGCGAGC
1 TTCTGTTCAACTCTTATGAGT
* *
83493182 TTCTGTTCAAATCTTATAAGT
1 TTCTGTTCAACTCTTATGAGT
* ** *
83493203 TTCTGTTCAGCTCTTACAAGC
1 TTCTGTTCAACTCTTATGAGT
* *
83493224 TTCTATTAAACTCTTATGAGT
1 TTCTGTTCAACTCTTATGAGT
* * * * *
83493245 TTTTGTTTAGCTCTTACGAGA
1 TTCTGTTCAACTCTTATGAGT
*
83493266 TTCTGTTGAACTCTTATGAGT
1 TTCTGTTCAACTCTTATGAGT
* *
83493287 TTCTGTTCAGCTTTTATGAGCT
1 TTCTGTTCAACTCTTATGAG-T
83493309 TT-TGTT
1 TTCTGTT
83493315 TAGCTTTCGA
Statistics
Matches: 103, Mismatches: 29, Indels: 2
0.77 0.22 0.01
Matches are distributed among these distances:
21 100 0.97
22 3 0.03
ACGTcount: A:0.19, C:0.18, G:0.16, T:0.47
Consensus pattern (21 bp):
TTCTGTTCAACTCTTATGAGT
Found at i:83493225 original size:42 final size:41
Alignment explanation
Indices: 83493161--83493314 Score: 164
Period size: 42 Copynumber: 3.7 Consensus size: 41
83493151 TCTTTCGAGC
** * *
83493161 TTCTGTTCAATTCTTGCGAGCTTCTGTTCAAATCTTATAAGT
1 TTCTGTTCAGCTCTTACGAGCTTCTGTT-AAATCTTATGAGT
* *
83493203 TTCTGTTCAGCTCTTACAAGCTTCTATTAAACTCTTATGAGT
1 TTCTGTTCAGCTCTTACGAGCTTCTGTTAAA-TCTTATGAGT
* * * *
83493245 TTTTGTTTAGCTCTTACGAGATTCTGTTGAACTCTTATGAGT
1 TTCTGTTCAGCTCTTACGAGCTTCTGTT-AAATCTTATGAGT
* * *
83493287 TTCTGTTCAGCTTTTATGAGCTTTTGTT
1 TTCTGTTCAGCTCTTACGAGCTTCTGTT
83493315 TAGCTTTCGA
Statistics
Matches: 92, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
41 3 0.03
42 87 0.95
43 2 0.02
ACGTcount: A:0.19, C:0.18, G:0.16, T:0.47
Consensus pattern (41 bp):
TTCTGTTCAGCTCTTACGAGCTTCTGTTAAATCTTATGAGT
Found at i:83493270 original size:63 final size:61
Alignment explanation
Indices: 83493203--83493333 Score: 145
Period size: 63 Copynumber: 2.1 Consensus size: 61
83493193 TCTTATAAGT
* *
83493203 TTCTGTTCAGCTCTTACAAGCTTCTATTAAACTCTTATGAGTTTTTGTTTAGCTCTTACGAGA
1 TTCTGTTCAACTCTTACAAGCTTCTATTAAACTCTTATGAGCTTTTGTTTAGCT-TT-CGAGA
* ** * * * * * *
83493266 TTCTGTTGAACTCTTATGAGTTTCTGTTCAGCTTTTATGAGCTTTTGTTTAGCTTTCGAGC
1 TTCTGTTCAACTCTTACAAGCTTCTATTAAACTCTTATGAGCTTTTGTTTAGCTTTCGAGA
83493327 TTCTGTT
1 TTCTGTT
83493334 GGTATATCTA
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
61 11 0.19
62 2 0.04
63 44 0.77
ACGTcount: A:0.18, C:0.18, G:0.17, T:0.48
Consensus pattern (61 bp):
TTCTGTTCAACTCTTACAAGCTTCTATTAAACTCTTATGAGCTTTTGTTTAGCTTTCGAGA
Found at i:83494581 original size:20 final size:20
Alignment explanation
Indices: 83494556--83494621 Score: 66
Period size: 20 Copynumber: 3.4 Consensus size: 20
83494546 GGCAAGTGAC
83494556 TTAGTTTGAAATAATGCCAA
1 TTAGTTTGAAATAATGCCAA
** * *
83494576 TTAGTTTGGGCA-AGTG--AC
1 TTAGTTT-GAAATAATGCCAA
83494594 TTAGTTTGAAATAATGCCAA
1 TTAGTTTGAAATAATGCCAA
83494614 TTAGTTTG
1 TTAGTTTG
83494622 GTAAACCTTG
Statistics
Matches: 34, Mismatches: 8, Indels: 8
0.68 0.16 0.16
Matches are distributed among these distances:
17 2 0.06
18 11 0.32
20 19 0.56
21 2 0.06
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (20 bp):
TTAGTTTGAAATAATGCCAA
Found at i:83494593 original size:38 final size:38
Alignment explanation
Indices: 83494546--83494622 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
83494536 TGTTTTGGTA
83494546 GGCAAGTGACTTAGTTTGAAATAATGCCAATTAGTTTG
1 GGCAAGTGACTTAGTTTGAAATAATGCCAATTAGTTTG
83494584 GGCAAGTGACTTAGTTTGAAATAATGCCAATTAGTTTG
1 GGCAAGTGACTTAGTTTGAAATAATGCCAATTAGTTTG
83494622 G
1 G
83494623 TAAACCTTGG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.31, C:0.10, G:0.25, T:0.34
Consensus pattern (38 bp):
GGCAAGTGACTTAGTTTGAAATAATGCCAATTAGTTTG
Found at i:83498595 original size:18 final size:19
Alignment explanation
Indices: 83498556--83498597 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
83498546 CTAAATATAT
*
83498556 TATTTACATATTTAACATA
1 TATTTACATATCTAACATA
*
83498575 TATTTGCATATCTAA-ATA
1 TATTTACATATCTAACATA
83498593 TATTT
1 TATTT
83498598 CTTCATTTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.38, C:0.10, G:0.02, T:0.50
Consensus pattern (19 bp):
TATTTACATATCTAACATA
Found at i:83499004 original size:44 final size:45
Alignment explanation
Indices: 83498933--83499021 Score: 110
Period size: 43 Copynumber: 2.0 Consensus size: 45
83498923 AATGACCTAT
*
83498933 ATTTTTTAATAATTTTTAAAAGCTTTCT-ATATTTTTA-ATTTTA
1 ATTTTTTAATAAATTTTAAAAGCTTTCTAATATTTTTATATTTTA
* ** *
83498976 ATTTTTTTATAAATTTTAAATATTTTTCTAATTTTTTTATATTTTA
1 ATTTTTTAATAAATTTTAAA-AGCTTTCTAATATTTTTATATTTTA
83499022 TGATACTTTA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
43 18 0.47
44 6 0.16
45 8 0.21
46 6 0.16
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.64
Consensus pattern (45 bp):
ATTTTTTAATAAATTTTAAAAGCTTTCTAATATTTTTATATTTTA
Found at i:83499072 original size:20 final size:21
Alignment explanation
Indices: 83499047--83499101 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
83499037 TAAATTTTAA
83499047 TTTTTATGTTTTTAAGAA-TT
1 TTTTTATGTTTTTAAGAAGTT
**
83499067 TTTTTAAATTTTT-AGAAGTT
1 TTTTTATGTTTTTAAGAAGTT
*
83499087 TTCTATATGTTTTTA
1 TT-TTTATGTTTTTA
83499102 TAAATTTTGA
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
19 4 0.15
20 15 0.56
21 8 0.30
ACGTcount: A:0.25, C:0.02, G:0.09, T:0.64
Consensus pattern (21 bp):
TTTTTATGTTTTTAAGAAGTT
Found at i:83499099 original size:29 final size:28
Alignment explanation
Indices: 83499067--83499138 Score: 74
Period size: 29 Copynumber: 2.5 Consensus size: 28
83499057 TTTAAGAATT
* *
83499067 TTTTTAAATTTTTAGAAGT-TTTCTATATG
1 TTTTTAAAATTTT-G-AGTATTTCTATATA
*
83499096 TTTTTATAAATTTTGAGTATTTTTATATA
1 TTTTTA-AAATTTTGAGTATTTCTATATA
83499125 TTTTTAATAATTTT
1 TTTTTAA-AATTTT
83499139 TTATTTTAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
28 4 0.11
29 27 0.73
30 6 0.16
ACGTcount: A:0.29, C:0.01, G:0.07, T:0.62
Consensus pattern (28 bp):
TTTTTAAAATTTTGAGTATTTCTATATA
Found at i:83499106 original size:31 final size:29
Alignment explanation
Indices: 83499064--83499141 Score: 84
Period size: 31 Copynumber: 2.6 Consensus size: 29
83499054 GTTTTTAAGA
*
83499064 ATTTTTTTAAATTTTTAGAAGTTTTCTATAT
1 ATTTTTATAAATTTTTAGAA-TTTT-TATAT
* * *
83499095 GTTTTTATAAATTTTGAGTATTTTTATAT
1 ATTTTTATAAATTTTTAGAATTTTTATAT
*
83499124 ATTTTTAATAATTTTTTA
1 ATTTTT-ATAAATTTTTA
83499142 TTTTAAATAT
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
29 10 0.26
30 13 0.33
31 16 0.41
ACGTcount: A:0.29, C:0.01, G:0.06, T:0.63
Consensus pattern (29 bp):
ATTTTTATAAATTTTTAGAATTTTTATAT
Found at i:83499138 original size:19 final size:19
Alignment explanation
Indices: 83499097--83499154 Score: 50
Period size: 19 Copynumber: 3.2 Consensus size: 19
83499087 TTCTATATGT
* * * *
83499097 TTTTATAAATTTTGAGTAT
1 TTTTATATATTTTAAATAA
*
83499116 TTTTATATATTTTTAATAA
1 TTTTATATATTTTAAATAA
83499135 TTTT-T-TATTTTAAAT-A
1 TTTTATATATTTTAAATAA
83499151 TTTT
1 TTTT
83499155 TTTTCATTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
16 5 0.15
17 9 0.26
18 1 0.03
19 19 0.56
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (19 bp):
TTTTATATATTTTAAATAA
Found at i:83499145 original size:17 final size:17
Alignment explanation
Indices: 83499123--83499185 Score: 58
Period size: 17 Copynumber: 3.6 Consensus size: 17
83499113 TATTTTTATA
83499123 TATTTTTAATAATTTTT
1 TATTTTTAATAATTTTT
*
83499140 TATTTTAAAT-ATTTTT
1 TATTTTTAATAATTTTT
83499156 T-TTCATTTATATATATTTTT
1 TATT--TTTA-ATA-ATTTTT
*
83499176 TAATTTTAAT
1 TATTTTTAAT
83499186 TTTTCATTGA
Statistics
Matches: 37, Mismatches: 3, Indels: 11
0.73 0.06 0.22
Matches are distributed among these distances:
15 2 0.05
16 7 0.19
17 12 0.32
18 4 0.11
19 4 0.11
20 7 0.19
21 1 0.03
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (17 bp):
TATTTTTAATAATTTTT
Found at i:83499158 original size:20 final size:20
Alignment explanation
Indices: 83499135--83499176 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
83499125 TTTTTAATAA
83499135 TTTTTT-ATTT-TAAATATT
1 TTTTTTCATTTATAAATATT
*
83499153 TTTTTTCATTTATATATATT
1 TTTTTTCATTTATAAATATT
83499173 TTTT
1 TTTT
83499177 AATTTTAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 6 0.29
19 4 0.19
20 11 0.52
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (20 bp):
TTTTTTCATTTATAAATATT
Found at i:83499181 original size:18 final size:18
Alignment explanation
Indices: 83499130--83499181 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
83499120 ATATATTTTT
*
83499130 AATA-ATTTTTTATTTTA
1 AATATATTTTTTAATTTA
* *
83499147 AATATTTTTTTTCATTTA
1 AATATATTTTTTAATTTA
*
83499165 TATATATTTTTTAATTT
1 AATATATTTTTTAATTT
83499182 TAATTTTTCA
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
17 4 0.14
18 24 0.86
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (18 bp):
AATATATTTTTTAATTTA
Found at i:83500878 original size:3 final size:3
Alignment explanation
Indices: 83500870--83500902 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
83500860 AACACTTGCA
83500870 CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT
1 CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT
83500903 TCAACAACAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33
Consensus pattern (3 bp):
CCT
Found at i:83508855 original size:22 final size:22
Alignment explanation
Indices: 83508827--83508870 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
83508817 GCATGCATGC
83508827 ATATATATATATATAAATGCCA
1 ATATATATATATATAAATGCCA
83508849 ATATATATATATATAAATGCCA
1 ATATATATATATATAAATGCCA
83508871 TGGCCAGTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.09, G:0.05, T:0.36
Consensus pattern (22 bp):
ATATATATATATATAAATGCCA
Found at i:83513401 original size:11 final size:11
Alignment explanation
Indices: 83513385--83513415 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
83513375 AAGTATGGGT
83513385 AGGTATGGGAA
1 AGGTATGGGAA
83513396 AGGTATGGGAA
1 AGGTATGGGAA
83513407 AGGTATGGG
1 AGGTATGGG
83513416 GTATGGGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.48, T:0.19
Consensus pattern (11 bp):
AGGTATGGGAA
Found at i:83517491 original size:18 final size:18
Alignment explanation
Indices: 83517468--83517560 Score: 150
Period size: 18 Copynumber: 5.2 Consensus size: 18
83517458 CCCAACTACT
*
83517468 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
*
83517486 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
*
83517504 GTATACGTGAATAGTACT
1 GTATACGTGAATAGTACC
*
83517522 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
83517540 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
83517558 GTA
1 GTA
83517561 AACGGTCGTA
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 68 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:83517520 original size:36 final size:36
Alignment explanation
Indices: 83517468--83517560 Score: 168
Period size: 36 Copynumber: 2.6 Consensus size: 36
83517458 CCCAACTACT
*
83517468 GTATACGTGAACAGTACCGTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
*
83517504 GTATACGTGAATAGTACTGTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
83517540 GTATACGTGAATAGTACCGTA
1 GTATACGTGAATAGTACCGTA
83517561 AACGGTCGTA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 54 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (36 bp):
GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
Found at i:83532200 original size:21 final size:20
Alignment explanation
Indices: 83532174--83532221 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 20
83532164 ATAGAAGTTG
83532174 TGAATGAC-GGGAAATTGACA
1 TGAATGACAGGG-AATTGACA
83532194 TTGAATGACAGGGAATTGACA
1 -TGAATGACAGGGAATTGACA
83532215 TGAATGA
1 TGAATGA
83532222 TTTTATTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.27
21 16 0.62
22 3 0.12
ACGTcount: A:0.40, C:0.08, G:0.29, T:0.23
Consensus pattern (20 bp):
TGAATGACAGGGAATTGACA
Found at i:83537928 original size:8 final size:8
Alignment explanation
Indices: 83537915--83537949 Score: 70
Period size: 8 Copynumber: 4.4 Consensus size: 8
83537905 ATTATGTATG
83537915 TATATGTA
1 TATATGTA
83537923 TATATGTA
1 TATATGTA
83537931 TATATGTA
1 TATATGTA
83537939 TATATGTA
1 TATATGTA
83537947 TAT
1 TAT
83537950 GAGAGGTTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.51
Consensus pattern (8 bp):
TATATGTA
Found at i:83538341 original size:41 final size:41
Alignment explanation
Indices: 83538277--83538409 Score: 178
Period size: 41 Copynumber: 3.2 Consensus size: 41
83538267 TCAGATTTAT
* * *
83538277 TGCCAGTGAAATAATTCAAACTTTATGTCTAGCAGGCTTGA
1 TGCCGGTGAAATATTTCAGACTTTATGTCTAGCAGGCTTGA
*
83538318 TGCCGGTGAAATATTTCAGACTTTATGTCTAGCAAGCTTGA
1 TGCCGGTGAAATATTTCAGACTTTATGTCTAGCAGGCTTGA
* * * *
83538359 TGCCGGTGAAATGTTTCGGACTTTACGTCTAGCAGGC-TAA
1 TGCCGGTGAAATATTTCAGACTTTATGTCTAGCAGGCTTGA
83538399 GTGCCGGTGAA
1 -TGCCGGTGAA
83538410 TTTGTTTAAA
Statistics
Matches: 82, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
40 2 0.02
41 80 0.98
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (41 bp):
TGCCGGTGAAATATTTCAGACTTTATGTCTAGCAGGCTTGA
Found at i:83540160 original size:21 final size:21
Alignment explanation
Indices: 83540104--83540291 Score: 99
Period size: 21 Copynumber: 9.0 Consensus size: 21
83540094 GTCCGAAGGC
* * *
83540104 TGAACAGAAGCACATAAGTGC
1 TGAACAGAAGCTCATAAGAGT
* * ** *
83540125 TAAATAGAAATTCATAAGGGT
1 TGAACAGAAGCTCATAAGAGT
* *
83540146 TGAACGGAAGCTCATAAGAGC
1 TGAACAGAAGCTCATAAGAGT
* * * *
83540167 TGAACAAAAACCCATAAGGGT
1 TGAACAGAAGCTCATAAGAGT
* * * *
83540188 TAAATAGAAGCTCAAAAGAGC
1 TGAACAGAAGCTCATAAGAGT
* * * *
83540209 TGAACAGAAACCCATCAGGGT
1 TGAACAGAAGCTCATAAGAGT
* *
83540230 TAAACAGAAGCTCA-ATAGAGC
1 TGAACAGAAGCTCATA-AGAGT
* * *
83540251 TGAACGGAAACTCATATGAGT
1 TGAACAGAAGCTCATAAGAGT
* *
83540272 TAAACAGAAGCTCGTAAGAG
1 TGAACAGAAGCTCATAAGAG
83540292 CTAAACGAAA
Statistics
Matches: 113, Mismatches: 52, Indels: 4
0.67 0.31 0.02
Matches are distributed among these distances:
21 112 0.99
22 1 0.01
ACGTcount: A:0.44, C:0.16, G:0.22, T:0.17
Consensus pattern (21 bp):
TGAACAGAAGCTCATAAGAGT
Found at i:83540183 original size:42 final size:42
Alignment explanation
Indices: 83540137--83540302 Score: 190
Period size: 42 Copynumber: 4.0 Consensus size: 42
83540127 AATAGAAATT
* *
83540137 CATAAGGGTTGAACGGAAGCTCATAAGAGCTGAACAAAAACC
1 CATAAGGGTTAAACAGAAGCTCATAAGAGCTGAACAAAAACC
* * *
83540179 CATAAGGGTTAAATAGAAGCTCAAAAGAGCTGAACAGAAACC
1 CATAAGGGTTAAACAGAAGCTCATAAGAGCTGAACAAAAACC
* ** *
83540221 CATCAGGGTTAAACAGAAGCTCA-ATAGAGCTGAACGGAAACT
1 CATAAGGGTTAAACAGAAGCTCATA-AGAGCTGAACAAAAACC
* * * * *
83540263 CATATGAGTTAAACAGAAGCTCGTAAGAGCTAAACGAAAA
1 CATAAGGGTTAAACAGAAGCTCATAAGAGCTGAACAAAAA
83540303 GTAAACACGA
Statistics
Matches: 107, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
41 1 0.01
42 105 0.98
43 1 0.01
ACGTcount: A:0.45, C:0.17, G:0.22, T:0.16
Consensus pattern (42 bp):
CATAAGGGTTAAACAGAAGCTCATAAGAGCTGAACAAAAACC
Found at i:83542446 original size:24 final size:25
Alignment explanation
Indices: 83542392--83542448 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 25
83542382 ATAAATTATT
* * *
83542392 AATATTAATTACTTAGAAATATTTA
1 AATATTAATTAATTACAAATATTAA
*
83542417 AA-ATTAATTAATT-CATATATTAA
1 AATATTAATTAATTACAAATATTAA
83542440 AATATTAAT
1 AATATTAAT
83542449 AATAAGTTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 9 0.33
24 16 0.59
25 2 0.07
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.44
Consensus pattern (25 bp):
AATATTAATTAATTACAAATATTAA
Found at i:83542968 original size:11 final size:11
Alignment explanation
Indices: 83542952--83542976 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
83542942 TGTAAGAATA
83542952 AAAATATTGAT
1 AAAATATTGAT
83542963 AAAATATTGAT
1 AAAATATTGAT
83542974 AAA
1 AAA
83542977 GATTTTTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (11 bp):
AAAATATTGAT
Found at i:83547307 original size:12 final size:12
Alignment explanation
Indices: 83547290--83547316 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
83547280 CGAAAACAGG
83547290 CTTTTAGCGGCA
1 CTTTTAGCGGCA
83547302 CTTTTAGCGGCA
1 CTTTTAGCGGCA
83547314 CTT
1 CTT
83547317 GGAAAAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.26, G:0.22, T:0.37
Consensus pattern (12 bp):
CTTTTAGCGGCA
Found at i:83547517 original size:41 final size:41
Alignment explanation
Indices: 83547451--83547531 Score: 126
Period size: 41 Copynumber: 2.0 Consensus size: 41
83547441 CTTACCTTTT
* *
83547451 GGGGCTTTAGCGGCGATTTTAAAAAAGTGCCGCTAATGCTC
1 GGGGCTTTAGAGGCGATTTTAAAAAAGCGCCGCTAATGCTC
* *
83547492 GGGGCTTTAGAGGCGTTTTTGAAAAAGCGCCGCTAATGCT
1 GGGGCTTTAGAGGCGATTTTAAAAAAGCGCCGCTAATGCT
83547532 GGAGGATTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (41 bp):
GGGGCTTTAGAGGCGATTTTAAAAAAGCGCCGCTAATGCTC
Found at i:83548335 original size:15 final size:15
Alignment explanation
Indices: 83548315--83548344 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
83548305 GGGGATTTAA
83548315 AGTTTAGGGGTTAGG
1 AGTTTAGGGGTTAGG
83548330 AGTTTAGGGGTTAGG
1 AGTTTAGGGGTTAGG
83548345 CATATTATGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.47, T:0.33
Consensus pattern (15 bp):
AGTTTAGGGGTTAGG
Found at i:83548574 original size:7 final size:7
Alignment explanation
Indices: 83548562--83548591 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
83548552 ATAGATTTAG
83548562 GGATTAT
1 GGATTAT
83548569 GGATTAT
1 GGATTAT
*
83548576 GGATTAG
1 GGATTAT
83548583 GGATTAT
1 GGATTAT
83548590 GG
1 GG
83548592 TTTAAGGGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.27, C:0.00, G:0.37, T:0.37
Consensus pattern (7 bp):
GGATTAT
Found at i:83548752 original size:302 final size:302
Alignment explanation
Indices: 83548033--83549412 Score: 2233
Period size: 302 Copynumber: 4.6 Consensus size: 302
83548023 ATGGATCTAT
* * * * * * * * * *
83548033 GGGTTAGACGTTAGGGGTTAAAAGTTAAGGATTTAAGGTTTAGGAATTTAGGGGTCGAGTTAAGA
1 GGGTTAGACGATAGCGGTTAAGAGTTAGGGATTCAAAGTTTAGGGATTCAAGGGTCGAGTTAAGG
*
83548098 TTTTGGGTGTTTAGATTAA--ATTTTTTTAATTTATATTTTAAATATGTTCTTATATAATTGTAA
66 TTTT--GAGTTTAGATTAATTATTTTTTTAATTTATATTTTAAATATGTTCTTATATAATTGTAA
* * * *
83548161 AAGAGATAATAATAAATTTGTTTAGGGTTTTTGGTTTAGGGTATTTGATTTATTTAAGATTTAAA
129 AAGAGATAATAATAAATTTGTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTTAAGATTTAAG
** * * * *
83548226 GCCGGTTTAGGAGTTCATATTTTAAGGTTTAGGGAGTATAGGTGTAGGGATTATGGA-T-T-G--
194 GCATGTTTAAGAGTGCATATTTTAAGGTTTAGGGAGTATAGATTTAGGGATTATGGATTATGGAT
* * *
83548286 --GGGATTATGGTTTAATGG-TGGGGATTTAAAGTTTAGGGGTTAG
259 TAGGGATTATGGTTTAAGGGCT-GAGATTTAAGGTTTA-GGGTTAG
* * * * * ** * *
83548329 GAGTT------TAGGGGTTAGGCATATTATGGG-TTAAAAG-TTAGGGATT-TGGGGTCGGGTCA
1 GGGTTAGACGATAGCGGTTAAG-A-GTTA-GGGATTCAAAGTTTAGGGATTCAAGGGTCGAGTTA
* *
83548385 GGGTTTTGGGTTTAGATTAATTA-TTTTTTAATTTATATTTTAAATATGTTCTTATATAATTGTA
63 AGGTTTTGAGTTTAGATTAATTATTTTTTTAATTTATATTTTAAATATGTTCTTATATAATTGTA
83548449 AAAGAGATAATAATAAATTTGTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTTAAGATTTAA
128 AAAGAGATAATAATAAATTTGTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTTAAGATTTAA
83548514 GGCATGTTTAAGAGTGCATATTTTAAGGTTTAGGGAGTATAGATTTAGGGATTATGGATTATGGA
193 GGCATGTTTAAGAGTGCATATTTTAAGGTTTAGGGAGTATAGATTTAGGGATTATGGATTATGGA
83548579 TTAGGGATTATGGTTTAAGGGCTGAGATTTAAGGTTTAGGGTTAG
258 TTAGGGATTATGGTTTAAGGGCTGAGATTTAAGGTTTAGGGTTAG
83548624 GGGTTAGACGATAGCGGTTAAGAGTTAGGGATTCAAAGTTTAGGGATTCAAGGGTCGAGTTAAGG
1 GGGTTAGACGATAGCGGTTAAGAGTTAGGGATTCAAAGTTTAGGGATTCAAGGGTCGAGTTAAGG
83548689 TTTTGAGTTTAGATTAATTATTTTTTTAATTTATATTTTAAATATGTTCTTATATAATTGTAAAA
66 TTTTGAGTTTAGATTAATTATTTTTTTAATTTATATTTTAAATATGTTCTTATATAATTGTAAAA
*
83548754 GAGATAATAATAAATCTGTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTTAAGATTTAAGGC
131 GAGATAATAATAAATTTGTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTTAAGATTTAAGGC
83548819 ATGTTTAAGAGTGCATATTTTAAGGTTTAGGGAGTATAGATTTAGGGATTATGGATTATGGATTA
196 ATGTTTAAGAGTGCATATTTTAAGGTTTAGGGAGTATAGATTTAGGGATTATGGATTATGGATTA
83548884 GGGATTATGGTTTAAGGGCTGAGATTTAAGGTTTAGGGTTAG
261 GGGATTATGGTTTAAGGGCTGAGATTTAAGGTTTAGGGTTAG
83548926 GGGTTAGACGATAGCGGTTAAGAGTTAGGGATTCAAAGTTTAGGGATTCAAGGGTCGAGTTAAGG
1 GGGTTAGACGATAGCGGTTAAGAGTTAGGGATTCAAAGTTTAGGGATTCAAGGGTCGAGTTAAGG
83548991 TTTTGAGTTTAGATTAATTATTTTTTTAATTTATATTTTAAATATGTTCTTATATAATTGTAAAA
66 TTTTGAGTTTAGATTAATTATTTTTTTAATTTATATTTTAAATATGTTCTTATATAATTGTAAAA
83549056 GAGATAATAATAAATTTGTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTTAAGATTTAAGGC
131 GAGATAATAATAAATTTGTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTTAAGATTTAAGGC
83549121 ATGTTTAAGAGTGCATATTTTAAGGTTTAGGGAGTATAGATTTAGGGATTATGGATTATGGATTA
196 ATGTTTAAGAGTGCATATTTTAAGGTTTAGGGAGTATAGATTTAGGGATTATGGATTATGGATTA
83549186 GGGATTATGGTTTAAGGGCTGAGATTTAAGGTTTAGGGTTAG
261 GGGATTATGGTTTAAGGGCTGAGATTTAAGGTTTAGGGTTAG
83549228 GGGTTAGACGATAGCGGTTAAGAGTTAGGGATTCAAAGTTTAGGGATTCAAGGGTCGAGTTAAGG
1 GGGTTAGACGATAGCGGTTAAGAGTTAGGGATTCAAAGTTTAGGGATTCAAGGGTCGAGTTAAGG
83549293 TTTTGAGTTTAGATTAATTATTTTTTTAATTTATATTTTAAATATGTTCTTATATAATTGTAAAA
66 TTTTGAGTTTAGATTAATTATTTTTTTAATTTATATTTTAAATATGTTCTTATATAATTGTAAAA
83549358 GAGATAATAATAAATTTGTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTTAA
131 GAGATAATAATAAATTTGTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTTAA
83549413 NNNNNNNNNN
Statistics
Matches: 1021, Mismatches: 40, Indels: 40
0.93 0.04 0.04
Matches are distributed among these distances:
288 12 0.01
289 154 0.15
290 26 0.03
291 10 0.01
292 9 0.01
293 2 0.00
295 11 0.01
296 34 0.03
297 1 0.00
298 3 0.00
299 9 0.01
300 10 0.01
301 39 0.04
302 701 0.69
ACGTcount: A:0.30, C:0.03, G:0.26, T:0.41
Consensus pattern (302 bp):
GGGTTAGACGATAGCGGTTAAGAGTTAGGGATTCAAAGTTTAGGGATTCAAGGGTCGAGTTAAGG
TTTTGAGTTTAGATTAATTATTTTTTTAATTTATATTTTAAATATGTTCTTATATAATTGTAAAA
GAGATAATAATAAATTTGTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTTAAGATTTAAGGC
ATGTTTAAGAGTGCATATTTTAAGGTTTAGGGAGTATAGATTTAGGGATTATGGATTATGGATTA
GGGATTATGGTTTAAGGGCTGAGATTTAAGGTTTAGGGTTAG
Found at i:83548876 original size:7 final size:7
Alignment explanation
Indices: 83548864--83548893 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
83548854 ATAGATTTAG
83548864 GGATTAT
1 GGATTAT
83548871 GGATTAT
1 GGATTAT
*
83548878 GGATTAG
1 GGATTAT
83548885 GGATTAT
1 GGATTAT
83548892 GG
1 GG
83548894 TTTAAGGGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.27, C:0.00, G:0.37, T:0.37
Consensus pattern (7 bp):
GGATTAT
Found at i:83549178 original size:7 final size:7
Alignment explanation
Indices: 83549166--83549195 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
83549156 ATAGATTTAG
83549166 GGATTAT
1 GGATTAT
83549173 GGATTAT
1 GGATTAT
*
83549180 GGATTAG
1 GGATTAT
83549187 GGATTAT
1 GGATTAT
83549194 GG
1 GG
83549196 TTTAAGGGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.27, C:0.00, G:0.37, T:0.37
Consensus pattern (7 bp):
GGATTAT
Found at i:83553343 original size:12 final size:12
Alignment explanation
Indices: 83553326--83553356 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
83553316 GCCCTTTTAC
*
83553326 AGAAAAATGAAA
1 AGAAAAACGAAA
83553338 AGAAAAACGAAA
1 AGAAAAACGAAA
83553350 AGAAAAA
1 AGAAAAA
83553357 ATAAAATCCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.77, C:0.03, G:0.16, T:0.03
Consensus pattern (12 bp):
AGAAAAACGAAA
Found at i:83554086 original size:87 final size:87
Alignment explanation
Indices: 83553938--83554176 Score: 307
Period size: 87 Copynumber: 2.7 Consensus size: 87
83553928 GGTAATATTT
* * * * **
83553938 GTGGCTTAAATATGTTTCCCTATTCTTGGGGAAGACAAGGTTCGCCGTCTAGGATCTGCTCCACT
1 GTGGCTTAAATCTGTTTCCCTACTCTTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACT
*
83554003 ATTGCTTAGGGAGATAGAACCA
66 ATTGCTTAGAGAGATAGAACCA
* * *
83554025 GTGGCTTAAATCTGTTTCCCTACTCTTGGGGAAGATGAGATTCGCCGTCTTTGATCCGCTCCACT
1 GTGGCTTAAATCTGTTTCCCTACTCTTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACT
* **
83554090 ATTGCTTAGAGAGATAGGATTA
66 ATTGCTTAGAGAGATAGAACCA
* * ** * *
83554112 ATGGCTTAAATCTGTTTCCCTACTCCTATGGAAGATAAGATTTGCTGTCTTCGATCTGCTCCACT
1 GTGGCTTAAATCTGTTTCCCTACTCTTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACT
83554177 GTTAATGCTG
Statistics
Matches: 131, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
87 131 1.00
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.33
Consensus pattern (87 bp):
GTGGCTTAAATCTGTTTCCCTACTCTTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACT
ATTGCTTAGAGAGATAGAACCA
Found at i:83557420 original size:11 final size:11
Alignment explanation
Indices: 83557404--83557436 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
83557394 CCGGATTCCC
83557404 CTCCCTTCTCT
1 CTCCCTTCTCT
83557415 CTCCCTTCTCT
1 CTCCCTTCTCT
83557426 CTTCCC-TCTCT
1 C-TCCCTTCTCT
83557437 TTTTTTTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 17 0.81
12 4 0.19
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:83564274 original size:39 final size:40
Alignment explanation
Indices: 83564179--83564440 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
83564169 TTGAATGATG
*
83564179 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
83564217 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
83564258 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
83564297 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
83564336 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
83564375 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
83564414 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
83564441 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:83565128 original size:92 final size:92
Alignment explanation
Indices: 83564971--83565144 Score: 276
Period size: 92 Copynumber: 1.9 Consensus size: 92
83564961 CTTGAATATG
* * * **
83564971 TAGATGGGAATATGAGTCTAGTTTCAGGGAAAAATCATGAAACTTATTTTCGAGTTGTGAAACTC
1 TAGATGGGAACATGAGTCTAGTTTCAGGGAAAAATCACGAAACTGATTTTCGAGTTACGAAACTC
83565036 AAGATATGATTTTTAAAGTAAAATACA
66 AAGATATGATTTTTAAAGTAAAATACA
* * *
83565063 TAGATGGGCACATGAGTCTAGTTTCTGGGAAAAATCACGAAACTGATTTTTGAGTTACGAAACTC
1 TAGATGGGAACATGAGTCTAGTTTCAGGGAAAAATCACGAAACTGATTTTCGAGTTACGAAACTC
83565128 AAGATATGATTTTTAAA
66 AAGATATGATTTTTAAA
83565145 ACGACTAGTA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
92 74 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (92 bp):
TAGATGGGAACATGAGTCTAGTTTCAGGGAAAAATCACGAAACTGATTTTCGAGTTACGAAACTC
AAGATATGATTTTTAAAGTAAAATACA
Found at i:83567112 original size:27 final size:27
Alignment explanation
Indices: 83567082--83567178 Score: 140
Period size: 27 Copynumber: 3.6 Consensus size: 27
83567072 ATATTGAGTC
* *
83567082 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
83567109 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
83567136 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
83567164 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
83567179 GTACAATTTA
Statistics
Matches: 62, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
27 44 0.71
28 18 0.29
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:83572297 original size:46 final size:46
Alignment explanation
Indices: 83572245--83572415 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 46
83572235 GGTTGAGCAT
*
83572245 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTACAGATGCGAATGTT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTACAGATGCGAATGTC
* *
83572291 CGAACTCGTTGAGTTGAGTCCGAGTTCA--T-GAGATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTACAGATGCGAA-T--G--TC
* * ** *
83572338 CGAACTTGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTACAGATGCGAATGTC
* *
83572384 CGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
83572416 GGGGCGGATT
Statistics
Matches: 105, Mismatches: 11, Indels: 18
0.78 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 6 0.06
44 1 0.01
45 1 0.01
46 59 0.56
47 27 0.26
48 1 0.01
49 1 0.01
50 5 0.05
51 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTACAGATGCGAATGTC
Found at i:83572409 original size:93 final size:92
Alignment explanation
Indices: 83572241--83572411 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 92
83572231 GGATGGTTGA
**
83572241 GCATCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACAGATGCGAATGTTCGAACTCGTTGAGTT
1 GCATCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACAGATGCGAATGCCCGAACTCGTTGAGTT
83572306 GAGTCCGAGTTCATGAGATGTAACTAG
66 GAGTCCGAGTTCATGAGATGTAACTAG
* * ** *
83572333 GCATCCGAACTTGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCAT-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTACAGATGCGAATGCCCGAACTCGTTGAGT
*
83572398 TGAGTCTGAGTTCA
65 TGAGTCCGAGTTCA
83572412 CTTAGGGGCG
Statistics
Matches: 70, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
92 4 0.06
93 66 0.94
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (92 bp):
GCATCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACAGATGCGAATGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCATGAGATGTAACTAG
Found at i:83579630 original size:40 final size:39
Alignment explanation
Indices: 83579585--83579666 Score: 146
Period size: 40 Copynumber: 2.1 Consensus size: 39
83579575 TCTAAGAAGG
83579585 TGAACCCAATAGTGCAATTTGATGCGAATGGAGCAGGAA
1 TGAACCCAATAGTGCAATTTGATGCGAATGGAGCAGGAA
*
83579624 TNGAACCCAATAGTGCAATTTGATGCGAATGGCGCAGGAA
1 T-GAACCCAATAGTGCAATTTGATGCGAATGGAGCAGGAA
83579664 TGA
1 TGA
83579667 TTAATTCAGA
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
39 3 0.07
40 38 0.93
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.21
Consensus pattern (39 bp):
TGAACCCAATAGTGCAATTTGATGCGAATGGAGCAGGAA
Found at i:83580786 original size:24 final size:24
Alignment explanation
Indices: 83580754--83580802 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
83580744 CCTATTTTTT
83580754 TCTCAATTTTTTCTACAAACCTTC
1 TCTCAATTTTTTCTACAAACCTTC
83580778 TCTCAATTTTTTCTACAAACCTTC
1 TCTCAATTTTTTCTACAAACCTTC
83580802 T
1 T
83580803 TTTGTAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.24, C:0.29, G:0.00, T:0.47
Consensus pattern (24 bp):
TCTCAATTTTTTCTACAAACCTTC
Found at i:83582430 original size:34 final size:34
Alignment explanation
Indices: 83582387--83582456 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
83582377 TACAATGTTA
83582387 TTTAATGTTTAAAAGTATAATTATATGACTTGGT
1 TTTAATGTTTAAAAGTATAATTATATGACTTGGT
*
83582421 TTTAATGTTTAAAAGTATAATTGTATGACTTGGT
1 TTTAATGTTTAAAAGTATAATTATATGACTTGGT
83582455 TT
1 TT
83582457 ATTGTAAAGG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.33, C:0.03, G:0.16, T:0.49
Consensus pattern (34 bp):
TTTAATGTTTAAAAGTATAATTATATGACTTGGT
Found at i:83592167 original size:48 final size:48
Alignment explanation
Indices: 83592106--83592198 Score: 168
Period size: 48 Copynumber: 1.9 Consensus size: 48
83592096 ATGATTTCGT
*
83592106 GAACCACAACTGTAACAAGCTCAGTTATTACTCTTTACCCAGTATCGG
1 GAACAACAACTGTAACAAGCTCAGTTATTACTCTTTACCCAGTATCGG
*
83592154 GAACAACAACTGTAACAAGCTCAGTTATTACTCTTTCCCCAGTAT
1 GAACAACAACTGTAACAAGCTCAGTTATTACTCTTTACCCAGTAT
83592199 TCTCCAAAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.28
Consensus pattern (48 bp):
GAACAACAACTGTAACAAGCTCAGTTATTACTCTTTACCCAGTATCGG
Found at i:83597751 original size:42 final size:41
Alignment explanation
Indices: 83597677--83597795 Score: 159
Period size: 42 Copynumber: 2.9 Consensus size: 41
83597667 GAGGAGCGTA
* *
83597677 ATCACTTAAGCT-TGCATGGGAGCTTCACTGATACACAGCTT
1 ATCACTTAAGCTCT-CGTGGGAGCTTCACTGATACACAACTT
* *
83597718 GTCACTTAAGCTCTCGTGGAGAGCTTCATTGATACACAACTT
1 ATCACTTAAGCTCTCGTGG-GAGCTTCACTGATACACAACTT
*
83597760 ATCACATAAGCTCTCGTGGGGAGCTTCACTGATACA
1 ATCACTTAAGCTCTCGT-GGGAGCTTCACTGATACA
83597796 TGATCTATCA
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
41 15 0.22
42 51 0.75
43 2 0.03
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (41 bp):
ATCACTTAAGCTCTCGTGGGAGCTTCACTGATACACAACTT
Found at i:83607456 original size:43 final size:43
Alignment explanation
Indices: 83607385--83607493 Score: 112
Period size: 43 Copynumber: 2.5 Consensus size: 43
83607375 TCCTAGACGT
* * * * * *
83607385 GGTCTTACATGTAATCACATATCGATGCCACTATCTCAGACA-
1 GGTCTTACACGAAATCTCAAATCAATGCCACTATCCCAGACAC
* * *
83607427 GAGTCTTACACGAAATCTCTAATCAATGCCAGTGTCCCAGACAC
1 G-GTCTTACACGAAATCTCAAATCAATGCCACTATCCCAGACAC
*
83607471 GGTCTTACACGATATCTCAAATC
1 GGTCTTACACGAAATCTCAAATC
83607494 GATGACAATG
Statistics
Matches: 54, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
42 1 0.02
43 52 0.96
44 1 0.02
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (43 bp):
GGTCTTACACGAAATCTCAAATCAATGCCACTATCCCAGACAC
Found at i:83607506 original size:43 final size:43
Alignment explanation
Indices: 83607421--83607510 Score: 119
Period size: 43 Copynumber: 2.1 Consensus size: 43
83607411 GCCACTATCT
* * *
83607421 CAGACAGAGTCTTACACGAAATCTCTAATCAATGCCAGTGTCC
1 CAGACAGAGTCTTACACGAAATCTCAAATCAATGACAATGTCC
* *
83607464 CAGACACG-GTCTTACACGATATCTCAAATCGATGACAATGTCC
1 CAGACA-GAGTCTTACACGAAATCTCAAATCAATGACAATGTCC
83607507 CAGA
1 CAGA
83607511 TGTGGTATTA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
43 40 0.98
44 1 0.02
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.22
Consensus pattern (43 bp):
CAGACAGAGTCTTACACGAAATCTCAAATCAATGACAATGTCC
Found at i:83607522 original size:43 final size:43
Alignment explanation
Indices: 83607432--83607529 Score: 106
Period size: 43 Copynumber: 2.3 Consensus size: 43
83607422 AGACAGAGTC
* * * *
83607432 TTACACGAAATCTCTAATCAATGCCAGTGTCCCAGACACGGTC
1 TTACACGAAATCTCAAATCAATGACAATGTCCCAGACACGGTA
* * ***
83607475 TTACACGATATCTCAAATCGATGACAATGTCCCAGATGTGGTA
1 TTACACGAAATCTCAAATCAATGACAATGTCCCAGACACGGTA
*
83607518 TTACATGAAATC
1 TTACACGAAATC
83607530 ATATCTCGGA
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (43 bp):
TTACACGAAATCTCAAATCAATGACAATGTCCCAGACACGGTA
Found at i:83610268 original size:20 final size:20
Alignment explanation
Indices: 83610243--83610281 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
83610233 TTCACTATAA
*
83610243 CAAATCATAACCATATTAAG
1 CAAATCATAACCACATTAAG
83610263 CAAATCATAACCACATTAA
1 CAAATCATAACCACATTAA
83610282 CCACAAACCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.51, C:0.23, G:0.03, T:0.23
Consensus pattern (20 bp):
CAAATCATAACCACATTAAG
Found at i:83614696 original size:17 final size:18
Alignment explanation
Indices: 83614674--83614710 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
83614664 TTTACACAAG
*
83614674 CGGGCCCAT-GGGCCCAT
1 CGGGCCCATCGGGCCAAT
83614691 CGGGCCCATCGGGCCAAT
1 CGGGCCCATCGGGCCAAT
83614709 CG
1 CG
83614711 AGGTACAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.14, C:0.41, G:0.35, T:0.11
Consensus pattern (18 bp):
CGGGCCCATCGGGCCAAT
Found at i:83614697 original size:9 final size:9
Alignment explanation
Indices: 83614674--83614710 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
83614664 TTTACACAAG
83614674 CGGGCCCAT
1 CGGGCCCAT
83614683 -GGGCCCAT
1 CGGGCCCAT
83614691 CGGGCCCAT
1 CGGGCCCAT
*
83614700 CGGGCCAAT
1 CGGGCCCAT
83614709 CG
1 CG
83614711 AGGTACAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
8 8 0.31
9 18 0.69
ACGTcount: A:0.14, C:0.41, G:0.35, T:0.11
Consensus pattern (9 bp):
CGGGCCCAT
Found at i:83617783 original size:50 final size:50
Alignment explanation
Indices: 83617671--83617921 Score: 358
Period size: 50 Copynumber: 4.9 Consensus size: 50
83617661 CCATGGCAAC
*
83617671 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAGTGAAAGTATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAA-G--GA-T--AAG--TGA
*
83617729 AAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCAAGGATAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
*
83617779 AAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCAAGGATAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
* **
83617829 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAACGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
* *
83617879 AAGTGCTAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGA
83617922 CAAATGGCAA
Statistics
Matches: 185, Mismatches: 8, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
50 140 0.76
52 3 0.02
54 1 0.01
55 1 0.01
57 1 0.01
58 39 0.21
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.28
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
Found at i:83617922 original size:50 final size:50
Alignment explanation
Indices: 83617671--83617955 Score: 354
Period size: 50 Copynumber: 5.5 Consensus size: 50
83617661 CCATGGCAAC
*
83617671 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAGTGAAAGTATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGAC------AA--ATGA
* * *
83617729 AAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCAAGGATAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
83617779 AAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCAAGGATAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
83617829 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAACGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
83617879 AAGTGCTAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATGGC
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAAT-GA
* * * *
83617930 AAGTAAAAAGCGGTAGCTTCGGCTAC
1 AAGTGATAAGTGATAGCTTCGGCTAC
83617956 CTGATCATCG
Statistics
Matches: 208, Mismatches: 18, Indels: 9
0.89 0.08 0.04
Matches are distributed among these distances:
50 144 0.69
51 21 0.10
52 2 0.01
58 41 0.20
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Done.