Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 257 of 322
Found at i:85263406 original size:9 final size:9
Alignment explanation
Indices: 85263371--85263399 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
85263361 AGCTAGAAAG
85263371 AACTTAAAT
1 AACTTAAAT
85263380 AACTTAAAT
1 AACTTAAAT
85263389 AACTTAAAT
1 AACTTAAAT
85263398 AA
1 AA
85263400 TTCAAATCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.59, C:0.10, G:0.00, T:0.31
Consensus pattern (9 bp):
AACTTAAAT
Found at i:85265618 original size:25 final size:26
Alignment explanation
Indices: 85265567--85265618 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
85265557 ATTTTCTAAA
**
85265567 AAATTTTATAATTTTTTTAATTTATT
1 AAATTTTATAATTTTTTTAATGAATT
*
85265593 AAATTTT-TAATTTTTTTTATGAATT
1 AAATTTTATAATTTTTTTAATGAATT
85265618 A
1 A
85265619 TATGTCGATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (26 bp):
AAATTTTATAATTTTTTTAATGAATT
Found at i:85265719 original size:26 final size:26
Alignment explanation
Indices: 85265688--85265749 Score: 115
Period size: 26 Copynumber: 2.4 Consensus size: 26
85265678 TAAATTTACC
85265688 ATCCAAAAGTAAGTAAATTAATTAAA
1 ATCCAAAAGTAAGTAAATTAATTAAA
85265714 ATCCAAAAGTAAGTAAATTAATTAAA
1 ATCCAAAAGTAAGTAAATTAATTAAA
*
85265740 ATCTAAAAGT
1 ATCCAAAAGT
85265750 TAATGACCAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.56, C:0.08, G:0.08, T:0.27
Consensus pattern (26 bp):
ATCCAAAAGTAAGTAAATTAATTAAA
Found at i:85266460 original size:21 final size:20
Alignment explanation
Indices: 85266431--85266469 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
85266421 CCATTATTAA
85266431 TCCTATCATAATTTAATAACT
1 TCCTATCAT-ATTTAATAACT
* *
85266452 TCCTTTCATTTTTAATAA
1 TCCTATCATATTTAATAA
85266470 TATATTAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.33, C:0.18, G:0.00, T:0.49
Consensus pattern (20 bp):
TCCTATCATATTTAATAACT
Found at i:85276771 original size:18 final size:18
Alignment explanation
Indices: 85276722--85276771 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
85276712 TATCTATACT
*
85276722 AATATATTTTTTTATTTA
1 AATATATTTTATTATTTA
*
85276740 AA-ATAAGTTATATTATTTA
1 AATAT-A-TTTTATTATTTA
85276759 AATATATTTTATT
1 AATATATTTTATT
85276772 TCTTATTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
17 2 0.08
18 9 0.35
19 13 0.50
20 2 0.08
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (18 bp):
AATATATTTTATTATTTA
Found at i:85281200 original size:28 final size:27
Alignment explanation
Indices: 85281169--85281222 Score: 63
Period size: 28 Copynumber: 2.0 Consensus size: 27
85281159 TATTTGTTGT
* *
85281169 TTTCAAAATTTATGTTGTGTTTGTTAAC
1 TTTCAAAATTGATGTAGTGTTT-TTAAC
* *
85281197 TTTCGAGATTGATGTAGTGTTTTTAA
1 TTTCAAAATTGATGTAGTGTTTTTAA
85281223 TATCTTATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
27 4 0.18
28 18 0.82
ACGTcount: A:0.24, C:0.06, G:0.19, T:0.52
Consensus pattern (27 bp):
TTTCAAAATTGATGTAGTGTTTTTAAC
Found at i:85282897 original size:15 final size:15
Alignment explanation
Indices: 85282877--85282914 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
85282867 AATTATGTAC
*
85282877 TTAATTTTTTAATAT
1 TTAATTTTTTAATAG
*
85282892 TTAATTTTTTAATCG
1 TTAATTTTTTAATAG
85282907 TTAATTTT
1 TTAATTTT
85282915 CCTCTCTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (15 bp):
TTAATTTTTTAATAG
Found at i:85283331 original size:14 final size:14
Alignment explanation
Indices: 85283314--85283343 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
85283304 CCAAAAACTT
85283314 AAAAAAAAAAAAAG
1 AAAAAAAAAAAAAG
*
85283328 AAAAAAAAAAGAAG
1 AAAAAAAAAAAAAG
85283342 AA
1 AA
85283344 GAAGAAAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAAAAG
Found at i:85288872 original size:7 final size:7
Alignment explanation
Indices: 85288860--85288884 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
85288850 TTTTAATAAA
85288860 AAAATAG
1 AAAATAG
85288867 AAAATAG
1 AAAATAG
85288874 AAAATAG
1 AAAATAG
85288881 AAAA
1 AAAA
85288885 GTTAAGTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (7 bp):
AAAATAG
Found at i:85290660 original size:27 final size:27
Alignment explanation
Indices: 85290630--85290681 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
85290620 TATATAATTT
*
85290630 AAGTCATTAAAAAATTATATATTAATA
1 AAGTCAATAAAAAATTATATATTAATA
* *
85290657 AAGTTAATAAAAAATTATATTTTAA
1 AAGTCAATAAAAAATTATATATTAA
85290682 CATCTGTAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (27 bp):
AAGTCAATAAAAAATTATATATTAATA
Found at i:85298223 original size:19 final size:19
Alignment explanation
Indices: 85298195--85298232 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
85298185 TTTGTGTTAC
85298195 CCTTACAACATATCATTGA
1 CCTTACAACATATCATTGA
*
85298214 CCTTATAACATATCATTGA
1 CCTTACAACATATCATTGA
85298233 TCCATTTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (19 bp):
CCTTACAACATATCATTGA
Found at i:85302419 original size:21 final size:20
Alignment explanation
Indices: 85302395--85302463 Score: 61
Period size: 21 Copynumber: 3.4 Consensus size: 20
85302385 TTATTTAATA
*
85302395 ATAATAATCTAATATTAAACC
1 ATAATAAT-TAATATAAAACC
* **
85302416 ATAAT-GTTAAT-TAATAATT
1 ATAATAATTAATATAA-AACC
85302435 ATAATAATTTAATATAAAACC
1 ATAATAA-TTAATATAAAACC
85302456 ATAATAAT
1 ATAATAAT
85302464 AATCATTATA
Statistics
Matches: 37, Mismatches: 7, Indels: 9
0.70 0.13 0.17
Matches are distributed among these distances:
18 2 0.05
19 11 0.30
20 2 0.05
21 19 0.51
22 3 0.08
ACGTcount: A:0.54, C:0.07, G:0.01, T:0.38
Consensus pattern (20 bp):
ATAATAATTAATATAAAACC
Found at i:85302547 original size:21 final size:21
Alignment explanation
Indices: 85302523--85302562 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
85302513 TAATATGCAG
85302523 CCTCATTTGTAGTCAATGGGA
1 CCTCATTTGTAGTCAATGGGA
85302544 CCTCATTTGTAGTCAATGG
1 CCTCATTTGTAGTCAATGG
85302563 CTTAATTGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.35
Consensus pattern (21 bp):
CCTCATTTGTAGTCAATGGGA
Found at i:85310225 original size:20 final size:20
Alignment explanation
Indices: 85310197--85310240 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
85310187 TGACATTTAA
85310197 TTGGCACAATTAAACTTGAT
1 TTGGCACAATTAAACTTGAT
* *
85310217 TTGGTACAATTAAACTTGGT
1 TTGGCACAATTAAACTTGAT
85310237 TTGG
1 TTGG
85310241 ATTGTTTACA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (20 bp):
TTGGCACAATTAAACTTGAT
Found at i:85312452 original size:26 final size:25
Alignment explanation
Indices: 85312423--85312490 Score: 64
Period size: 31 Copynumber: 2.4 Consensus size: 25
85312413 ATTTTATTAT
85312423 TTATAATAAAAATGATAATTTAATCA
1 TTATAATAAAAAT-ATAATTTAATCA
85312449 TTATATGATAAGAAAAAATATAATTTAATCA
1 TTATA--AT----AAAAATATAATTTAATCA
*
85312480 TTATATTAAAA
1 TTATAATAAAA
85312491 TTTTCGTCTA
Statistics
Matches: 35, Mismatches: 1, Indels: 13
0.71 0.02 0.27
Matches are distributed among these distances:
25 4 0.11
26 5 0.14
28 2 0.06
29 1 0.03
31 17 0.49
32 6 0.17
ACGTcount: A:0.54, C:0.03, G:0.04, T:0.38
Consensus pattern (25 bp):
TTATAATAAAAATATAATTTAATCA
Found at i:85313588 original size:22 final size:23
Alignment explanation
Indices: 85313563--85313622 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
85313553 TGGACTGAAT
85313563 ATAAAAATTTAAACTAAAT-AAA
1 ATAAAAATTTAAACTAAATAAAA
*
85313585 ATAAATAA-ATAAA-TAAATAAAA
1 ATAAA-AATTTAAACTAAATAAAA
*
85313607 ATAAAACTTTACAACT
1 ATAAAAATTTA-AACT
85313623 TGGGCCACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 6 0.20
22 19 0.63
23 4 0.13
24 1 0.03
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (23 bp):
ATAAAAATTTAAACTAAATAAAA
Found at i:85313590 original size:4 final size:4
Alignment explanation
Indices: 85313572--85313605 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
85313562 TATAAAAATT
85313572 TAAA CTAAA TAAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA -TAAA T-AAA TAAA TAAA TAAA TAAA TAAA
85313606 AATAAAACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:85315011 original size:23 final size:22
Alignment explanation
Indices: 85314959--85315011 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
85314949 TCCACGTCTT
*
85314959 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
85314981 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
85315004 TTTCTTTT
1 TTTCTTTT
85315012 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:85317996 original size:5 final size:6
Alignment explanation
Indices: 85317981--85318005 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
85317971 AATACGAGAA
85317981 AAAAAG AAAAAG AAAAAG AAAAAG A
1 AAAAAG AAAAAG AAAAAG AAAAAG A
85318006 GAAATCGACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:85324148 original size:35 final size:35
Alignment explanation
Indices: 85324108--85324180 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
85324098 CACGAATCTT
85324108 GATCTTGAATTCGATATTTTATAAGATGACAAAAG
1 GATCTTGAATTCGATATTTTATAAGATGACAAAAG
85324143 GATCTTGAATTCGATATTTTATAAGATGACAAAAG
1 GATCTTGAATTCGATATTTTATAAGATGACAAAAG
85324178 GAT
1 GAT
85324181 TGACAAGGGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.40, C:0.08, G:0.18, T:0.34
Consensus pattern (35 bp):
GATCTTGAATTCGATATTTTATAAGATGACAAAAG
Found at i:85346426 original size:15 final size:16
Alignment explanation
Indices: 85346402--85346431 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
85346392 ATCTCATTAT
85346402 AAAAACTTACAAAATG
1 AAAAACTTACAAAATG
85346418 AAAAA-TTACAAAAT
1 AAAAACTTACAAAAT
85346432 AGTTATTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.67, C:0.10, G:0.03, T:0.20
Consensus pattern (16 bp):
AAAAACTTACAAAATG
Found at i:85356555 original size:21 final size:21
Alignment explanation
Indices: 85356501--85356556 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 21
85356491 AAAAATTATT
85356501 TTAAATAAAAAATTATATCAA
1 TTAAATAAAAAATTATATCAA
* **
85356522 TAAAATTTTAAAATTA-ATCATA
1 TTAAA-TAAAAAATTATATCA-A
85356544 TTAAATAAAAAAT
1 TTAAATAAAAAAT
85356557 CAATTTTATT
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
21 14 0.52
22 13 0.48
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.36
Consensus pattern (21 bp):
TTAAATAAAAAATTATATCAA
Found at i:85360676 original size:51 final size:51
Alignment explanation
Indices: 85360621--85360723 Score: 163
Period size: 51 Copynumber: 2.0 Consensus size: 51
85360611 AAACCCCATT
* * *
85360621 GGATTAACCAA-CTCCATTTCATAATCATACTTTTGATGAGAAATCGGATCC
1 GGATTAACCAAGC-CCAATTCATAATCATACGTTTGACGAGAAATCGGATCC
85360672 GGATTAACCAAGCCCAATTCATAATCATACGTTTGACGAGAAATCGGATCC
1 GGATTAACCAAGCCCAATTCATAATCATACGTTTGACGAGAAATCGGATCC
85360723 G
1 G
85360724 ACAGAGTTTC
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
51 47 0.98
52 1 0.02
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (51 bp):
GGATTAACCAAGCCCAATTCATAATCATACGTTTGACGAGAAATCGGATCC
Found at i:85361010 original size:20 final size:20
Alignment explanation
Indices: 85360964--85361011 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
85360954 CGTCGGAACC
**
85360964 CTAATTTTGTTGGTGTTGAAA
1 CTAA-TTTGTTGGTACTGAAA
* *
85360985 CCAATTTGTTGGTACTGAGA
1 CTAATTTGTTGGTACTGAAA
85361005 CTAATTT
1 CTAATTT
85361012 CCATGGAAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
20 19 0.86
21 3 0.14
ACGTcount: A:0.25, C:0.10, G:0.21, T:0.44
Consensus pattern (20 bp):
CTAATTTGTTGGTACTGAAA
Found at i:85364896 original size:7 final size:7
Alignment explanation
Indices: 85364862--85364899 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
85364852 TTTCGGTGCT
*
85364862 TTTAATA
1 TTTAATG
*
85364869 TTTAATA
1 TTTAATG
85364876 TTTAATG
1 TTTAATG
85364883 TTTAATG
1 TTTAATG
85364890 TTTAATG
1 TTTAATG
85364897 TTT
1 TTT
85364900 TTCTCTTGGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.61
Consensus pattern (7 bp):
TTTAATG
Found at i:85365027 original size:16 final size:17
Alignment explanation
Indices: 85364992--85365030 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
85364982 TCGATAATTT
85364992 TAATTTTATATAACTAA
1 TAATTTTATATAACTAA
85365009 TAATTTTAT-TATA-TAA
1 TAATTTTATATA-ACTAA
85365025 TAATTT
1 TAATTT
85365031 AATAAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (17 bp):
TAATTTTATATAACTAA
Found at i:85365436 original size:13 final size:14
Alignment explanation
Indices: 85365415--85365443 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
85365405 TGAAAAATGG
85365415 ATTAGAAAATATTT
1 ATTAGAAAATATTT
85365429 ATTA-AAAATATTT
1 ATTAGAAAATATTT
85365442 AT
1 AT
85365444 GAAGTTAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (14 bp):
ATTAGAAAATATTT
Found at i:85366006 original size:31 final size:32
Alignment explanation
Indices: 85365957--85366020 Score: 87
Period size: 31 Copynumber: 2.0 Consensus size: 32
85365947 ATATTAAATA
*
85365957 AGATATTTATTAATTAAATA-ATTATATTATG
1 AGATATTTATTAATTAAATATATTAAATTATG
*
85365988 AGATTTTTATGTAA-TAAATATATTAAATTATG
1 AGATATTTAT-TAATTAAATATATTAAATTATG
85366020 A
1 A
85366021 CAAATGTATG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 15 0.52
32 14 0.48
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (32 bp):
AGATATTTATTAATTAAATATATTAAATTATG
Found at i:85366969 original size:15 final size:15
Alignment explanation
Indices: 85366946--85366989 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
85366936 TATCAAATTT
85366946 ATATTGATTGAAATC
1 ATATTGATTGAAATC
* * * *
85366961 ATTTTGATTGGATTT
1 ATATTGATTGAAATC
85366976 ATATTGATTGAAAT
1 ATATTGATTGAAAT
85366990 ATAATATATA
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.34, C:0.02, G:0.16, T:0.48
Consensus pattern (15 bp):
ATATTGATTGAAATC
Found at i:85367647 original size:18 final size:19
Alignment explanation
Indices: 85367626--85367666 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
85367616 AATGAAATGA
85367626 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
85367644 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
85367663 GAAA
1 GAAA
85367667 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:85371744 original size:7 final size:7
Alignment explanation
Indices: 85371732--85371757 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
85371722 TTTTTTTTAT
85371732 CCTTGGA
1 CCTTGGA
85371739 CCTTGGA
1 CCTTGGA
85371746 CCTTGGA
1 CCTTGGA
85371753 CCTTG
1 CCTTG
85371758 ATCCCTGATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.31, G:0.27, T:0.31
Consensus pattern (7 bp):
CCTTGGA
Found at i:85381123 original size:14 final size:14
Alignment explanation
Indices: 85381084--85381151 Score: 63
Period size: 14 Copynumber: 4.9 Consensus size: 14
85381074 TATCTCAAAG
85381084 ATAAAT-ATTTTATT
1 ATAAATAATTTT-TT
85381098 A-AAAT-ATATTTTT
1 ATAAATAAT-TTTTT
85381111 ATAAATAATTTTTT
1 ATAAATAATTTTTT
85381125 -TAAAATAAATTTTTT
1 AT-AAAT-AATTTTTT
*
85381140 ATAATTAATTTT
1 ATAAATAATTTT
85381152 ACTTTAGAAT
Statistics
Matches: 47, Mismatches: 1, Indels: 12
0.78 0.02 0.20
Matches are distributed among these distances:
13 10 0.21
14 23 0.49
15 13 0.28
16 1 0.02
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
ATAAATAATTTTTT
Found at i:85381127 original size:28 final size:29
Alignment explanation
Indices: 85381084--85381152 Score: 97
Period size: 29 Copynumber: 2.4 Consensus size: 29
85381074 TATCTCAAAG
*
85381084 ATAAAT-ATTTTATTAAAATATA-TTTTT
1 ATAAATAATTTTATTAAAATAAATTTTTT
*
85381111 ATAAATAATTTTTTTAAAATAAATTTTTT
1 ATAAATAATTTTATTAAAATAAATTTTTT
*
85381140 ATAATTAATTTTA
1 ATAAATAATTTTA
85381153 CTTTAGAATC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
27 6 0.17
28 14 0.39
29 16 0.44
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (29 bp):
ATAAATAATTTTATTAAAATAAATTTTTT
Found at i:85386090 original size:31 final size:31
Alignment explanation
Indices: 85386026--85386101 Score: 82
Period size: 31 Copynumber: 2.4 Consensus size: 31
85386016 ATGACTTAAA
* *
85386026 TAAATTTTTAAATAATTCAATAACTTTAATG
1 TAAATTTTAAAATAATACAATAACTTTAATG
* **
85386057 TAAATTTTCAAATAATACAATAA-TTATTTTG
1 TAAATTTTAAAATAATACAATAACTT-TAATG
85386088 TAAAATTTTAAAAT
1 T-AAATTTTAAAAT
85386102 TAAATTGTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
30 2 0.05
31 25 0.66
32 11 0.29
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (31 bp):
TAAATTTTAAAATAATACAATAACTTTAATG
Found at i:85386106 original size:13 final size:13
Alignment explanation
Indices: 85386090--85386123 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
85386080 TTATTTTGTA
*
85386090 AAATTTTAAAATT
1 AAATTTAAAAATT
85386103 AAATTGTAAAAATT
1 AAATT-TAAAAATT
85386117 AAATTTA
1 AAATTTA
85386124 TTAATAGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (13 bp):
AAATTTAAAAATT
Found at i:85387627 original size:3 final size:3
Alignment explanation
Indices: 85387619--85387644 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
85387609 TCGTTTTCTG
85387619 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
85387645 CTTAAATTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:85388168 original size:5 final size:5
Alignment explanation
Indices: 85388158--85388190 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
85388148 TTAGCATACC
85388158 AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAA
1 AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAA
85388191 ATGGAGAGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (5 bp):
AAAGA
Found at i:85392179 original size:14 final size:14
Alignment explanation
Indices: 85392138--85392179 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
85392128 TAACACCTAT
85392138 AAAAATAATATTTTA
1 AAAAATAATA-TTTA
*
85392153 ATAAAATTA-ATTTA
1 A-AAAATAATATTTA
85392167 AAAAATAATATTT
1 AAAAATAATATTT
85392180 TAATTCAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
13 6 0.26
14 9 0.39
15 2 0.09
16 6 0.26
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AAAAATAATATTTA
Found at i:85392181 original size:15 final size:15
Alignment explanation
Indices: 85392138--85392182 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
85392128 TAACACCTAT
85392138 AAAAATAATATTTTA
1 AAAAATAATATTTTA
*
85392153 ATAAAAT--TAATTTA
1 A-AAAATAATATTTTA
85392167 AAAAATAATATTTTA
1 AAAAATAATATTTTA
85392182 A
1 A
85392183 TTCAAAAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
13 5 0.20
14 7 0.28
15 8 0.32
16 5 0.20
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
AAAAATAATATTTTA
Found at i:85392263 original size:23 final size:23
Alignment explanation
Indices: 85392237--85392300 Score: 60
Period size: 23 Copynumber: 2.8 Consensus size: 23
85392227 CACATTTATT
* * * *
85392237 TTTTTTAATTTTATATATTTTAG
1 TTTTATAACTTTATATTTTATAG
*
85392260 TTTTATGACTTTATATTTTATAG
1 TTTTATAACTTTATATTTTATAG
85392283 TTTTCATAA-TTTA-ATTTT
1 TTTT-ATAACTTTATATTTT
85392301 TATTTCATAA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
22 5 0.15
23 26 0.76
24 3 0.09
ACGTcount: A:0.27, C:0.03, G:0.05, T:0.66
Consensus pattern (23 bp):
TTTTATAACTTTATATTTTATAG
Found at i:85396646 original size:29 final size:28
Alignment explanation
Indices: 85396597--85396651 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 28
85396587 TTTTTTATAA
85396597 TTTTAATGATTTTAAATTTTAAAATAGT
1 TTTTAATGATTTTAAATTTTAAAATAGT
85396625 TTTTATAT-ATTTCTAAATTTTAAAATA
1 TTTTA-ATGATTT-TAAATTTTAAAATA
85396652 TTAATTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
28 9 0.36
29 16 0.64
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.55
Consensus pattern (28 bp):
TTTTAATGATTTTAAATTTTAAAATAGT
Found at i:85410133 original size:23 final size:23
Alignment explanation
Indices: 85410103--85410171 Score: 70
Period size: 23 Copynumber: 3.0 Consensus size: 23
85410093 GGGAAAGTGA
*
85410103 AAATTTAATTATAATTTTTTTAT
1 AAATTTAATTATAATTTTATTAT
*
85410126 AAATTTAAATATAGA-TTTATTAT
1 AAATTTAATTATA-ATTTTATTAT
* *
85410149 ATA-TTAATTTATAATTTCATTAT
1 AAATTTAA-TTATAATTTTATTAT
85410172 TTTTAAAGGG
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
22 5 0.13
23 32 0.84
24 1 0.03
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.55
Consensus pattern (23 bp):
AAATTTAATTATAATTTTATTAT
Found at i:85414896 original size:17 final size:17
Alignment explanation
Indices: 85414876--85414919 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
85414866 AGTATTGTTT
85414876 ATTAAAATTATTTTTGA
1 ATTAAAATTATTTTTGA
*
85414893 ATTATAAAGTATTTTTGA
1 ATTA-AAATTATTTTTGA
*
85414911 ATAAAAATT
1 ATTAAAATT
85414920 GAATTTTTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 8 0.35
18 15 0.65
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (17 bp):
ATTAAAATTATTTTTGA
Found at i:85414907 original size:18 final size:17
Alignment explanation
Indices: 85414864--85414916 Score: 58
Period size: 18 Copynumber: 3.2 Consensus size: 17
85414854 GCGTTATTTG
85414864 AAAGTATTGTTT--ATTA
1 AAAGTATT-TTTGAATTA
*
85414880 AAATTATTTTTGAATTA
1 AAAGTATTTTTGAATTA
85414897 TAAAGTATTTTTGAA-TA
1 -AAAGTATTTTTGAATTA
85414914 AAA
1 AAA
85414917 ATTGAATTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
15 3 0.09
16 10 0.31
17 6 0.19
18 13 0.41
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.47
Consensus pattern (17 bp):
AAAGTATTTTTGAATTA
Found at i:85425764 original size:16 final size:16
Alignment explanation
Indices: 85425739--85425772 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
85425729 ATTACTACCC
*
85425739 TCTTTCTTTTTTCTTT
1 TCTTTCTTTTTCCTTT
*
85425755 TCTTTTTTTTTCCTTT
1 TCTTTCTTTTTCCTTT
85425771 TC
1 TC
85425773 AGATTAGAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (16 bp):
TCTTTCTTTTTCCTTT
Found at i:85428566 original size:19 final size:19
Alignment explanation
Indices: 85428514--85428568 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
85428504 ATATATATAT
*
85428514 TAATAATCAAATAATAAAAA
1 TAATAAT-AAATAATTAAAA
**
85428534 TAATGAAT-TTTAATTAAAA
1 TAAT-AATAAATAATTAAAA
85428553 TAATAATAAATAATTA
1 TAATAATAAATAATTA
85428569 TCATAAATTT
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
18 3 0.11
19 18 0.64
20 4 0.14
21 3 0.11
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (19 bp):
TAATAATAAATAATTAAAA
Found at i:85429175 original size:19 final size:19
Alignment explanation
Indices: 85429123--85429176 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
85429113 TGTGTGAATG
85429123 TTAAAAAGTGTTT-AAATA
1 TTAAAAAGTGTTTAAAATA
* *
85429141 ATAAAATA-TATATTAAAATA
1 TTAAAA-AGTGT-TTAAAATA
85429161 TTAAAAAGTGTTTAAA
1 TTAAAAAGTGTTTAAA
85429177 TCATTTAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 7
0.72 0.10 0.18
Matches are distributed among these distances:
18 7 0.25
19 9 0.32
20 12 0.43
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.37
Consensus pattern (19 bp):
TTAAAAAGTGTTTAAAATA
Found at i:85434083 original size:25 final size:26
Alignment explanation
Indices: 85434033--85434086 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 26
85434023 AAAACTACAT
* *
85434033 TATATTTCATTTCATCCTTATATATA
1 TATATATCATTCCATCCTTATATATA
85434059 TATATATCATTCCA-CCTTA-AGTATA
1 TATATATCATTCCATCCTTATA-TATA
85434084 TAT
1 TAT
85434087 TTGTTTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 1 0.04
25 12 0.48
26 12 0.48
ACGTcount: A:0.33, C:0.17, G:0.02, T:0.48
Consensus pattern (26 bp):
TATATATCATTCCATCCTTATATATA
Found at i:85446224 original size:15 final size:17
Alignment explanation
Indices: 85446190--85446226 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
85446180 AATAACAATA
*
85446190 ATTAAGCTCGATTGAAT
1 ATTAAGCTCAATTGAAT
85446207 ATTAA-CTCAATT-AAT
1 ATTAAGCTCAATTGAAT
85446222 ATTAA
1 ATTAA
85446227 TATTGTTATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 8 0.42
16 6 0.32
17 5 0.26
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.38
Consensus pattern (17 bp):
ATTAAGCTCAATTGAAT
Found at i:85447976 original size:19 final size:21
Alignment explanation
Indices: 85447950--85447995 Score: 62
Period size: 19 Copynumber: 2.3 Consensus size: 21
85447940 ATTTATTTTT
85447950 ATATAAAAATAT-TTT-TAAAA
1 ATATAAAAA-ATCTTTGTAAAA
85447970 A-ATAAAAAATCTTTGTAAAA
1 ATATAAAAAATCTTTGTAAAA
85447990 ATATAA
1 ATATAA
85447996 TTTTCTATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 2 0.09
19 10 0.43
20 7 0.30
21 4 0.17
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (21 bp):
ATATAAAAAATCTTTGTAAAA
Found at i:85447977 original size:20 final size:21
Alignment explanation
Indices: 85447949--85447995 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 21
85447939 TATTTATTTT
*
85447949 TATATAAAAATATTTTTAAAAA
1 TATA-AAAAATATTTGTAAAAA
*
85447971 -ATAAAAAATCTTTGTAAAAA
1 TATAAAAAATATTTGTAAAAA
85447991 TATAA
1 TATAA
85447996 TTTTCTATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (21 bp):
TATAAAAAATATTTGTAAAAA
Found at i:85448589 original size:21 final size:18
Alignment explanation
Indices: 85448543--85448589 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 18
85448533 TTTATTTTTT
85448543 TATATAAAAAATACAAAA
1 TATATAAAAAATACAAAA
85448561 TATAATAAAAAATGATCAAAA
1 TAT-ATAAAAAAT-A-CAAAA
85448582 TAATATAA
1 T-ATATAA
85448590 TATATTTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
18 3 0.12
19 9 0.36
20 1 0.04
21 10 0.40
22 2 0.08
ACGTcount: A:0.68, C:0.04, G:0.02, T:0.26
Consensus pattern (18 bp):
TATATAAAAAATACAAAA
Found at i:85448618 original size:23 final size:23
Alignment explanation
Indices: 85448578--85448623 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
85448568 AAAAATGATC
85448578 AAAATAATATAATATATT-TTAT
1 AAAATAATATAATATATTATTAT
* *
85448600 AAAATTAATATATTTTATTATTAT
1 AAAA-TAATATAATATATTATTAT
85448624 CGAATTGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 4 0.20
23 12 0.60
24 4 0.20
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (23 bp):
AAAATAATATAATATATTATTAT
Found at i:85462645 original size:33 final size:30
Alignment explanation
Indices: 85462618--85462675 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
85462608 ACTTAAGTTT
* *
85462618 ATTTTTTC-CAATTTGGTATCTAAACTTAA
1 ATTTTTTCTTAATTTGATATCTAAACTTAA
*
85462647 ATTTTTTCTTAATTTGATATCTGAACTTA
1 ATTTTTTCTTAATTTGATATCTAAACTTA
85462676 TTTAGTCTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 8 0.32
30 17 0.68
ACGTcount: A:0.29, C:0.12, G:0.07, T:0.52
Consensus pattern (30 bp):
ATTTTTTCTTAATTTGATATCTAAACTTAA
Found at i:85462661 original size:30 final size:29
Alignment explanation
Indices: 85462592--85462692 Score: 84
Period size: 27 Copynumber: 3.6 Consensus size: 29
85462582 AACATGATAC
* * * *
85462592 TTTTTCCTAATTTGGTA-CTTAAGTT-TA
1 TTTTTTCTAATTTGGTATCTAAACTTAAA
*
85462619 TTTTTTCCAATTTGGTATCTAAACTTAAA
1 TTTTTTCTAATTTGGTATCTAAACTTAAA
* *
85462648 TTTTTTCTTAATTTGATATCTGAACTT--A
1 TTTTTTC-TAATTTGGTATCTAAACTTAAA
**
85462676 TTTAGTCTAATTTGGTA
1 TTTTTTCTAATTTGGTA
85462693 CTTGAACTGG
Statistics
Matches: 60, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
27 24 0.40
28 12 0.20
29 8 0.13
30 16 0.27
ACGTcount: A:0.26, C:0.11, G:0.10, T:0.53
Consensus pattern (29 bp):
TTTTTTCTAATTTGGTATCTAAACTTAAA
Found at i:85463312 original size:59 final size:59
Alignment explanation
Indices: 85463241--85463380 Score: 162
Period size: 59 Copynumber: 2.4 Consensus size: 59
85463231 AGTAATTTGA
*
85463241 AAAAAAAAAACTTAGGTA-TCAAAATAGGAAAA-AGTGCCAAGTTCAATTATC-AAATTAG
1 AAAAAAAAAACTTAGGTACT-AAAATA-GAAAATAGTGCCAAGTTCAAGTATCAAAATTAG
* * * * * *
85463299 ACAAAAAAAAACTTAAGCACTAGATTAGAAAATTGTGTCAAGTTCAAGTATCAAAATTAG
1 A-AAAAAAAAACTTAGGTACTAAAATAGAAAATAGTGCCAAGTTCAAGTATCAAAATTAG
85463359 AAAAAAAAAA-TTAGGTACTAAA
1 AAAAAAAAAACTTAGGTACTAAA
85463381 TTAAAAAAAT
Statistics
Matches: 68, Mismatches: 10, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
58 15 0.22
59 44 0.65
60 9 0.13
ACGTcount: A:0.54, C:0.10, G:0.13, T:0.23
Consensus pattern (59 bp):
AAAAAAAAAACTTAGGTACTAAAATAGAAAATAGTGCCAAGTTCAAGTATCAAAATTAG
Found at i:85463390 original size:59 final size:59
Alignment explanation
Indices: 85463278--85463393 Score: 155
Period size: 59 Copynumber: 2.0 Consensus size: 59
85463268 GAAAAAGTGC
* * *
85463278 CAAGTTCAATTATCAAATTAGACAAAAAAAAACTTAAGCACTAGATTAGAAAATTGTGT
1 CAAGTTCAAGTATCAAATTAGACAAAAAAAAACTTAAGCACTAAATTAAAAAATTGTGT
* * *
85463337 CAAGTTCAAGTATCAAAATTAGA-AAAAAAAAA-TTAGGTACTAAATTAAAAAAATGTG
1 CAAGTTCAAGTATC-AAATTAGACAAAAAAAAACTTAAGCACTAAATTAAAAAATTGTG
85463394 AAATTCAATT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
58 20 0.40
59 22 0.44
60 8 0.16
ACGTcount: A:0.53, C:0.09, G:0.12, T:0.26
Consensus pattern (59 bp):
CAAGTTCAAGTATCAAATTAGACAAAAAAAAACTTAAGCACTAAATTAAAAAATTGTGT
Found at i:85464265 original size:18 final size:19
Alignment explanation
Indices: 85464242--85464281 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
85464232 TAACTCAAAA
85464242 TTTA-TTTTATTAA-ATATT
1 TTTATTTTTA-TAATATATT
85464260 TTTATTTTTATAATATATT
1 TTTATTTTTATAATATATT
85464279 TTT
1 TTT
85464282 TCTTAATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (19 bp):
TTTATTTTTATAATATATT
Found at i:85465113 original size:16 final size:16
Alignment explanation
Indices: 85465092--85465126 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
85465082 AATTGAATCG
85465092 AATTTT-TAATATTTTT
1 AATTTTATAA-ATTTTT
85465108 AATTTTATAAATTTTT
1 AATTTTATAAATTTTT
85465124 AAT
1 AAT
85465127 AATTTATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 15 0.83
17 3 0.17
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
AATTTTATAAATTTTT
Found at i:85466524 original size:15 final size:15
Alignment explanation
Indices: 85466504--85466535 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
85466494 GAGTTGTCGT
85466504 TGCTGGTACTGGTGA
1 TGCTGGTACTGGTGA
*
85466519 TGCTGGTGCTGGTGA
1 TGCTGGTACTGGTGA
85466534 TG
1 TG
85466536 GCGACGGTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.09, C:0.12, G:0.44, T:0.34
Consensus pattern (15 bp):
TGCTGGTACTGGTGA
Found at i:85466785 original size:36 final size:36
Alignment explanation
Indices: 85466745--85466868 Score: 151
Period size: 36 Copynumber: 3.4 Consensus size: 36
85466735 TGCTAATTGT
85466745 GATGATGATTGTGCTGGTGCTGGTGTTGCTACTGCA
1 GATGATGATTGTGCTGGTGCTGGTGTTGCTACTGCA
* * * * * *
85466781 GATGATGATTGTGATGATGTCGTTGTAGCTGCTAATTG-T
1 GATGATGATTGTGCTGGTG-C-TGGT-GTTGCT-ACTGCA
85466820 GATGATGATTGTGCTGGTGCTGGTGTTGCTACTGCA
1 GATGATGATTGTGCTGGTGCTGGTGTTGCTACTGCA
85466856 GATGATGATTGTG
1 GATGATGATTGTG
85466869 ATGATGTCGT
Statistics
Matches: 71, Mismatches: 12, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
35 3 0.04
36 35 0.49
37 4 0.06
38 4 0.06
39 22 0.31
40 3 0.04
ACGTcount: A:0.17, C:0.10, G:0.35, T:0.38
Consensus pattern (36 bp):
GATGATGATTGTGCTGGTGCTGGTGTTGCTACTGCA
Found at i:85466796 original size:75 final size:75
Alignment explanation
Indices: 85466716--85466895 Score: 342
Period size: 75 Copynumber: 2.4 Consensus size: 75
85466706 GCTACCGATG
85466716 GTGATGATGTCGTTGTAGCTGCTAATTGTGATGATGATTGTGCTGGTGCTGGTGTTGCTACTGCA
1 GTGATGATGTCGTTGTAGCTGCTAATTGTGATGATGATTGTGCTGGTGCTGGTGTTGCTACTGCA
85466781 GATGATGATT
66 GATGATGATT
85466791 GTGATGATGTCGTTGTAGCTGCTAATTGTGATGATGATTGTGCTGGTGCTGGTGTTGCTACTGCA
1 GTGATGATGTCGTTGTAGCTGCTAATTGTGATGATGATTGTGCTGGTGCTGGTGTTGCTACTGCA
85466856 GATGATGATT
66 GATGATGATT
* *
85466866 GTGATGATGTCGTTGTAGCCGCTGATTGTG
1 GTGATGATGTCGTTGTAGCTGCTAATTGTG
85466896 TTGGAGCTGG
Statistics
Matches: 103, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
75 103 1.00
ACGTcount: A:0.17, C:0.11, G:0.34, T:0.38
Consensus pattern (75 bp):
GTGATGATGTCGTTGTAGCTGCTAATTGTGATGATGATTGTGCTGGTGCTGGTGTTGCTACTGCA
GATGATGATT
Found at i:85466976 original size:24 final size:24
Alignment explanation
Indices: 85466931--85466976 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
85466921 TGATGATTGT
* * * *
85466931 GATGATGTTGATGTTGTTGTTGCA
1 GATGATGATGATGGTATGGTTGCA
85466955 GATGATGATGATGGTATGGTTG
1 GATGATGATGATGGTATGGTTG
85466977 TAGGTGCTGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.20, C:0.02, G:0.37, T:0.41
Consensus pattern (24 bp):
GATGATGATGATGGTATGGTTGCA
Found at i:85466987 original size:27 final size:30
Alignment explanation
Indices: 85466957--85467035 Score: 76
Period size: 33 Copynumber: 2.6 Consensus size: 30
85466947 TTGTTGCAGA
85466957 TGATGATGATGGTA-TGGTT-GTA-GGTGC
1 TGATGATGATGGTAGTGGTTGGTACGGTGC
*
85466984 TGATTG-TGATGGTGATTGTGTTGGTACTGGTGC
1 TGA-TGATGATGGT-AGTG-GTTGGTAC-GGTGC
*
85467017 AGATGATGATGGTAGTGGT
1 TGATGATGATGGTAGTGGT
85467036 GTCGTTGCAG
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
27 10 0.24
28 3 0.07
29 2 0.05
30 3 0.07
31 5 0.12
32 5 0.12
33 14 0.33
ACGTcount: A:0.18, C:0.04, G:0.41, T:0.38
Consensus pattern (30 bp):
TGATGATGATGGTAGTGGTTGGTACGGTGC
Found at i:85466994 original size:30 final size:30
Alignment explanation
Indices: 85466912--85466994 Score: 80
Period size: 30 Copynumber: 2.8 Consensus size: 30
85466902 CTGGTATTGC
* *
85466912 TGTTGTAGATGATGATTGTGATGATGTTGA
1 TGTTGTAGATGCTGATTGTGATGATGGTGA
* * *
85466942 TGTTGTTGTTGCAGA-TGATGATGATGGT-A
1 TGTTGTAGATGCTGATTG-TGATGATGGTGA
*
85466971 TGGTTGTAGGTGCTGATTGTGATG
1 T-GTTGTAGATGCTGATTGTGATG
85466995 GTGATTGTGT
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
29 4 0.10
30 36 0.86
31 2 0.05
ACGTcount: A:0.19, C:0.02, G:0.36, T:0.42
Consensus pattern (30 bp):
TGTTGTAGATGCTGATTGTGATGATGGTGA
Found at i:85467071 original size:27 final size:27
Alignment explanation
Indices: 85466991--85467076 Score: 77
Period size: 27 Copynumber: 3.2 Consensus size: 27
85466981 TGCTGATTGT
* * *
85466991 GATGGTGATTGTGTTGGTACTGGTGCA
1 GATGATGATTGTGTTGGTGCTGCTGCA
* *
85467018 GATGATGATGGTAG-TGGTG-TCGTTGCA
1 GATGATGATTGT-GTTGGTGCT-GCTGCA
* *
85467045 GCTGCTGATTGTGTTGGTGCTGCTGCA
1 GATGATGATTGTGTTGGTGCTGCTGCA
85467072 GATGA
1 GATGA
85467077 CGACGACGAT
Statistics
Matches: 45, Mismatches: 10, Indels: 8
0.71 0.16 0.13
Matches are distributed among these distances:
26 2 0.04
27 41 0.91
28 2 0.04
ACGTcount: A:0.15, C:0.10, G:0.40, T:0.35
Consensus pattern (27 bp):
GATGATGATTGTGTTGGTGCTGCTGCA
Found at i:85469393 original size:17 final size:19
Alignment explanation
Indices: 85469366--85469408 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
85469356 GGTGCAATCG
*
85469366 GTAAA-TATTTGTA-TTT-
1 GTAAATTATTTGGATTTTA
85469382 GTAAATTATTTGGATTTTA
1 GTAAATTATTTGGATTTTA
85469401 GTAAATTA
1 GTAAATTA
85469409 AATTTTAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 5 0.22
17 7 0.30
18 3 0.13
19 8 0.35
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (19 bp):
GTAAATTATTTGGATTTTA
Found at i:85472650 original size:2 final size:2
Alignment explanation
Indices: 85472643--85472680 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
85472633 TTTTGCTTTG
85472643 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
85472681 ATGTATATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:85473133 original size:11 final size:11
Alignment explanation
Indices: 85473117--85473150 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
85473107 AATTTAATCC
*
85473117 ATTTAATTTTT
1 ATTTAAATTTT
*
85473128 ATTTAAATTTC
1 ATTTAAATTTT
85473139 ATTTAAATTTT
1 ATTTAAATTTT
85473150 A
1 A
85473151 AAAATATCAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (11 bp):
ATTTAAATTTT
Found at i:85474865 original size:16 final size:17
Alignment explanation
Indices: 85474835--85474867 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
85474825 CTAATTTCAT
85474835 TTTAATAATTATAATTA
1 TTTAATAATTATAATTA
85474852 TTTAATAA-TATAATTA
1 TTTAATAATTATAATTA
85474868 AAGCCTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
TTTAATAATTATAATTA
Found at i:85476052 original size:45 final size:44
Alignment explanation
Indices: 85475985--85476071 Score: 115
Period size: 45 Copynumber: 2.0 Consensus size: 44
85475975 TTAGATTAAA
85475985 TGTTATGATTTCTACTATTTTGAAAAGT-AAATTTTTACTTTATT
1 TGTTATGATTTCTACTATTTTGAAAAGTAAAATTTTT-CTTTATT
* *
85476029 TGTTATGCTTTGC-ACTAATTTTGAAATGTAAAATTTTTCTTTA
1 TGTTATGATTT-CTACT-ATTTTGAAAAGTAAAATTTTTCTTTA
85476072 GATCTAGCCA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
44 13 0.34
45 17 0.45
46 8 0.21
ACGTcount: A:0.29, C:0.08, G:0.10, T:0.53
Consensus pattern (44 bp):
TGTTATGATTTCTACTATTTTGAAAAGTAAAATTTTTCTTTATT
Found at i:85479294 original size:19 final size:20
Alignment explanation
Indices: 85479260--85479301 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
85479250 ATAAAGATAT
85479260 TTAATTATGTTTTATAATGA
1 TTAATTATGTTTTATAATGA
*
85479280 TTAATTTTG-TTTATAATGA
1 TTAATTATGTTTTATAATGA
85479299 TTA
1 TTA
85479302 TGATATATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (20 bp):
TTAATTATGTTTTATAATGA
Found at i:85489461 original size:46 final size:44
Alignment explanation
Indices: 85489402--85489516 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
85489392 ACAGGACAGA
* *
85489402 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
85489448 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
85489492 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
85489517 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:85489497 original size:44 final size:45
Alignment explanation
Indices: 85489402--85489535 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
85489392 ACAGGACAGA
* *
85489402 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
85489448 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
85489492 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
85489536 CAGGGTATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:85492377 original size:18 final size:19
Alignment explanation
Indices: 85492356--85492396 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
85492346 AATAAATACT
85492356 TTTAATTT-TT-TTATAATA
1 TTTAATTTCTTATT-TAATA
85492374 TTT-ATTTCTTATTTAATA
1 TTTAATTTCTTATTTAATA
85492392 TTTAA
1 TTTAA
85492397 ATATATTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
17 4 0.20
18 13 0.65
19 3 0.15
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (19 bp):
TTTAATTTCTTATTTAATA
Found at i:85492476 original size:23 final size:23
Alignment explanation
Indices: 85492448--85492508 Score: 68
Period size: 23 Copynumber: 2.7 Consensus size: 23
85492438 TACACTAATA
*
85492448 TACTTAATTTTTTTTTAATTTAG
1 TACTTAACTTTTTTTTAATTTAG
** *
85492471 TACTTAACAATTTGTTAATTTAG
1 TACTTAACTTTTTTTTAATTTAG
* *
85492494 TATTTAAGTTTTTTT
1 TACTTAACTTTTTTT
85492509 AGGTTCAATT
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.28, C:0.05, G:0.07, T:0.61
Consensus pattern (23 bp):
TACTTAACTTTTTTTTAATTTAG
Found at i:85508680 original size:17 final size:17
Alignment explanation
Indices: 85508658--85508691 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
85508648 ATCCACTAAT
*
85508658 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
85508675 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
85508692 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:85513319 original size:17 final size:17
Alignment explanation
Indices: 85513297--85513330 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
85513287 ATCCACTAAT
*
85513297 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
85513314 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
85513331 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:85514925 original size:21 final size:22
Alignment explanation
Indices: 85514886--85514931 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
85514876 ATCGGATATT
*
85514886 AATTTTAACTAATTTAACT-GA
1 AATTTTAACTAATTCAACTAGA
* *
85514907 AATTTTAATTTATTCAACTAGA
1 AATTTTAACTAATTCAACTAGA
85514929 AAT
1 AAT
85514932 CGGAAAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.43, C:0.09, G:0.04, T:0.43
Consensus pattern (22 bp):
AATTTTAACTAATTCAACTAGA
Found at i:85526141 original size:32 final size:31
Alignment explanation
Indices: 85526081--85526153 Score: 105
Period size: 32 Copynumber: 2.4 Consensus size: 31
85526071 TTTGTTCTTC
85526081 TTTTACTTTTACTTTACTTTTACTTTTTACT
1 TTTTACTTTTACTTTACTTTTACTTTTTACT
85526112 TTTTACTTTTTACTTTCACTTTTAC-TTTTAC-
1 TTTTAC-TTTTACTTT-ACTTTTACTTTTTACT
*
85526143 TTTCACTTTTA
1 TTTTACTTTTA
85526154 TTTTTCTTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
30 5 0.13
31 11 0.28
32 15 0.38
33 8 0.21
ACGTcount: A:0.16, C:0.18, G:0.00, T:0.66
Consensus pattern (31 bp):
TTTTACTTTTACTTTACTTTTACTTTTTACT
Found at i:85526158 original size:6 final size:6
Alignment explanation
Indices: 85526080--85526157 Score: 97
Period size: 6 Copynumber: 12.8 Consensus size: 6
85526070 GTTTGTTCTT
*
85526080 CTTTTA CTTTTA C-TTTA CTTTTA CTTTTTA CTTTTTA CTTTTTA CTTTCA
1 CTTTTA CTTTTA CTTTTA CTTTTA C-TTTTA C-TTTTA C-TTTTA CTTTTA
*
85526130 CTTTTA CTTTTA CTTTCA CTTTTA -TTTT
1 CTTTTA CTTTTA CTTTTA CTTTTA CTTTT
85526158 TCTTATTTGT
Statistics
Matches: 66, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
5 9 0.14
6 37 0.56
7 20 0.30
ACGTcount: A:0.15, C:0.18, G:0.00, T:0.67
Consensus pattern (6 bp):
CTTTTA
Found at i:85531259 original size:17 final size:16
Alignment explanation
Indices: 85531218--85531259 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
85531208 TTTTAAAAAA
85531218 CTTAAAAATATATTAT
1 CTTAAAAATATATTAT
* *
85531234 -TTAATAATATTTTTAT
1 CTTAAAAATA-TATTAT
85531250 CTTAAAAATA
1 CTTAAAAATA
85531260 CTTCTAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
15 8 0.38
16 5 0.24
17 8 0.38
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (16 bp):
CTTAAAAATATATTAT
Found at i:85543320 original size:14 final size:14
Alignment explanation
Indices: 85543301--85543331 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
85543291 CCTTTATATA
*
85543301 TATGTGTGTGTGTG
1 TATGTGTGTGTATG
85543315 TATGTGTGTGTATG
1 TATGTGTGTGTATG
85543329 TAT
1 TAT
85543332 ATATAATATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.00, G:0.35, T:0.52
Consensus pattern (14 bp):
TATGTGTGTGTATG
Found at i:85548760 original size:20 final size:21
Alignment explanation
Indices: 85548732--85548770 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
85548722 CTTTCTCTAT
*
85548732 GTGAGTCATAAAT-ATTTTTC
1 GTGAATCATAAATGATTTTTC
85548752 GTGAATCATAAATGATTTT
1 GTGAATCATAAATGATTTT
85548771 AAGGTTTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.33, C:0.08, G:0.15, T:0.44
Consensus pattern (21 bp):
GTGAATCATAAATGATTTTTC
Found at i:85561874 original size:16 final size:16
Alignment explanation
Indices: 85561853--85561883 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
85561843 GATATTTTAA
85561853 TATATTATATTAATAT
1 TATATTATATTAATAT
*
85561869 TATATTATGTTAATA
1 TATATTATATTAATA
85561884 AAATAATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (16 bp):
TATATTATATTAATAT
Found at i:85561980 original size:12 final size:12
Alignment explanation
Indices: 85561963--85561993 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
85561953 GAAGCAGGGG
85561963 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
85561975 AGAAAAAGGGAA
1 AGAAAAAGAGAA
85561987 AGAAAAA
1 AGAAAAA
85561994 TAAAAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:85563896 original size:20 final size:20
Alignment explanation
Indices: 85563873--85563913 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
85563863 CAGTAAAATG
85563873 TTTTCCGAAAAATGATTTAC
1 TTTTCCGAAAAATGATTTAC
* *
85563893 TTTTCTGGAAAATGATTTAC
1 TTTTCCGAAAAATGATTTAC
85563913 T
1 T
85563914 GAAATATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (20 bp):
TTTTCCGAAAAATGATTTAC
Found at i:85564034 original size:20 final size:20
Alignment explanation
Indices: 85564009--85564047 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
85563999 TATTTTACAT
85564009 ATATTAATAAATTTATATAC
1 ATATTAATAAATTTATATAC
*
85564029 ATATTAATAAATTTTTATA
1 ATATTAATAAATTTATATA
85564048 TTTTAAATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (20 bp):
ATATTAATAAATTTATATAC
Found at i:85564327 original size:43 final size:44
Alignment explanation
Indices: 85564269--85564355 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 44
85564259 TACTAGAAAT
* * *
85564269 TAATAATATTATCCAAATGCATAA-TTAGTAGTACACCACATAA
1 TAATAACATTATCCAAATGCATAACTAAATAGTACACCACATAA
* * *
85564312 TAATAACATTGTCCAAGTGCATAACTAAATATTACACCACATAA
1 TAATAACATTATCCAAATGCATAACTAAATAGTACACCACATAA
85564356 AAGTATCAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
43 21 0.57
44 16 0.43
ACGTcount: A:0.46, C:0.18, G:0.07, T:0.29
Consensus pattern (44 bp):
TAATAACATTATCCAAATGCATAACTAAATAGTACACCACATAA
Found at i:85585990 original size:40 final size:39
Alignment explanation
Indices: 85585935--85586042 Score: 146
Period size: 39 Copynumber: 2.7 Consensus size: 39
85585925 AGTTACCATT
* *
85585935 TCAGGAACAAATCCTATCCATTTTATATATT-TCTAGTGAA
1 TCAGGAATAAATCCTATTCATTTTA-AT-TTCTCTAGTGAA
* *
85585975 TCAGGAATAAATCCTATTCACTTTAATTTCTTTAGTGAA
1 TCAGGAATAAATCCTATTCATTTTAATTTCTCTAGTGAA
85586014 TCAGGAATAAATCCTATTCACTTTTAATT
1 TCAGGAATAAATCCTATTCA-TTTTAATT
85586043 CTCGAGAAGG
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.03
39 30 0.49
40 29 0.48
ACGTcount: A:0.34, C:0.17, G:0.09, T:0.40
Consensus pattern (39 bp):
TCAGGAATAAATCCTATTCATTTTAATTTCTCTAGTGAA
Found at i:85586209 original size:26 final size:25
Alignment explanation
Indices: 85586179--85586234 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 25
85586169 CCATTTATTA
85586179 ATTTCCAAACATGTATCATTTCTTTC
1 ATTTCCAAACATGTATCA-TTCTTTC
**
85586205 ATTTCTTAACATGTATCATTCTTTC
1 ATTTCCAAACATGTATCATTCTTTC
85586230 ATTTC
1 ATTTC
85586235 ACATCTATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
25 12 0.43
26 16 0.57
ACGTcount: A:0.25, C:0.21, G:0.04, T:0.50
Consensus pattern (25 bp):
ATTTCCAAACATGTATCATTCTTTC
Found at i:85586232 original size:25 final size:26
Alignment explanation
Indices: 85586186--85586234 Score: 91
Period size: 25 Copynumber: 1.9 Consensus size: 26
85586176 TTAATTTCCA
85586186 AACATGTATCATTTCTTTCATTTCTT
1 AACATGTATCATTTCTTTCATTTCTT
85586212 AACATGTATCA-TTCTTTCATTTC
1 AACATGTATCATTTCTTTCATTTC
85586235 ACATCTATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.24, C:0.20, G:0.04, T:0.51
Consensus pattern (26 bp):
AACATGTATCATTTCTTTCATTTCTT
Found at i:85588485 original size:24 final size:23
Alignment explanation
Indices: 85588431--85588487 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 23
85588421 AAACAGAAAA
*
85588431 AGAAATATATTAACAAATAATAT
1 AGAAATATATTAACAAATAACAT
85588454 A-AAGATATATATATA-AAATAACAT
1 AGAA-ATATAT-TA-ACAAATAACAT
85588478 AGAAATATAT
1 AGAAATATAT
85588488 GAATAGTACA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
22 2 0.07
23 7 0.24
24 17 0.59
25 3 0.10
ACGTcount: A:0.61, C:0.04, G:0.05, T:0.30
Consensus pattern (23 bp):
AGAAATATATTAACAAATAACAT
Found at i:85588781 original size:39 final size:37
Alignment explanation
Indices: 85588729--85588821 Score: 114
Period size: 37 Copynumber: 2.4 Consensus size: 37
85588719 TTATAAGAAA
85588729 ATATAACTGATAATATTAAAAATACACACACATATATATAT
1 ATATAAC--ATAATATT-AAAA-ACACACACATATATATAT
* *
85588770 ATATAACATAATATTTAAAACACACATATATATATAT
1 ATATAACATAATATTAAAAACACACACATATATATAT
*
85588807 ATATATATATAATAT
1 ATATA-ACATAATAT
85588822 AAATAAATTT
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
37 22 0.46
38 11 0.23
39 8 0.17
41 7 0.15
ACGTcount: A:0.54, C:0.10, G:0.01, T:0.35
Consensus pattern (37 bp):
ATATAACATAATATTAAAAACACACACATATATATAT
Found at i:85592502 original size:20 final size:20
Alignment explanation
Indices: 85592465--85592507 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
85592455 ATCATATGAT
85592465 TTTATTTAAAATTATTAA-A
1 TTTATTTAAAATTATTAATA
* *
85592484 TTTATTATAAGATTTTTAATA
1 TTTATT-TAAAATTATTAATA
85592505 TTT
1 TTT
85592508 GGAAAATCCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 6 0.30
20 10 0.50
21 4 0.20
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (20 bp):
TTTATTTAAAATTATTAATA
Found at i:85594145 original size:143 final size:143
Alignment explanation
Indices: 85593887--85594172 Score: 563
Period size: 143 Copynumber: 2.0 Consensus size: 143
85593877 ATTTCAGCAG
85593887 CTGATTTTATTTATTAATGATCCTTTTAGTTTCATTTTTGTTTCAATTGAGTTTTTTGTTATTTT
1 CTGATTTTATTTATTAATGATCCTTTTAGTTTCATTTTTGTTTCAATTGAGTTTTTTGTTATTTT
*
85593952 CAGCATTTTTATTCTTTGAAACCCTTCTATTTTTGAGGCTTACTTATTATTCACCATTCAATATA
66 CAGCATTTTTATTCTTTGAAACCCTTCTATTTTTGAGACTTACTTATTATTCACCATTCAATATA
85594017 CTATCTTGAAGTA
131 CTATCTTGAAGTA
85594030 CTGATTTTATTTATTAATGATCCTTTTAGTTTCATTTTTGTTTCAATTGAGTTTTTTGTTATTTT
1 CTGATTTTATTTATTAATGATCCTTTTAGTTTCATTTTTGTTTCAATTGAGTTTTTTGTTATTTT
85594095 CAGCATTTTTATTCTTTGAAACCCTTCTATTTTTGAGACTTACTTATTATTCACCATTCAATATA
66 CAGCATTTTTATTCTTTGAAACCCTTCTATTTTTGAGACTTACTTATTATTCACCATTCAATATA
85594160 CTATCTTGAAGTA
131 CTATCTTGAAGTA
85594173 TTTTATTAAG
Statistics
Matches: 142, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
143 142 1.00
ACGTcount: A:0.23, C:0.14, G:0.09, T:0.53
Consensus pattern (143 bp):
CTGATTTTATTTATTAATGATCCTTTTAGTTTCATTTTTGTTTCAATTGAGTTTTTTGTTATTTT
CAGCATTTTTATTCTTTGAAACCCTTCTATTTTTGAGACTTACTTATTATTCACCATTCAATATA
CTATCTTGAAGTA
Found at i:85595667 original size:132 final size:130
Alignment explanation
Indices: 85595282--85595668 Score: 429
Period size: 131 Copynumber: 2.9 Consensus size: 130
85595272 ATAAGGATTC
* * * *
85595282 CTTTGAAAATTCTTCAAAACGAAGACA-AGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTA
1 CTTTAAAAACTCTTCAAAACG-AGA-AGAAATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTA
* *
85595346 ACGTGTTGGGTTACAATTTCGCGTTTGCTCAAAATAACCGAATATCGCTTCGAAATTTCATTCAT
64 ACGTGTTGGGTTACAATTTCGCGTTTGCTCAAAATAATCGAATATCCCTTCGAAATTTCATTCAT
*
85595411 GT
129 AT
* * * * * * * * *
85595413 CTTTTAAAATTCTTCCAAACGAGGACGACATTCGATATTTAGTAATTCACGGAATCGTGCCCTAA
1 CTTTAAAAACTCTTCAAAACGA-GAAGAAATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAA
*
85595478 CGTGTTGGGTTACAATTTCGCGTTTGCTCAAAATAATCGAGTATCCCTTC-AAGATTTCATTCAT
65 CGTGTTGGGTTACAATTTCGCGTTTGCTCAAAATAATCGAATATCCCTTCGAA-ATTTCATTCAT
85595542 AT
129 AT
* * *
85595544 CTTCTAAAAACTCTTTAAAACGA-AAGAAATGTTCGATGTTTGGCAATTCGGGGAATAGTGCCCT
1 CTT-TAAAAACTCTTCAAAACGAGAAGAAA--TTCGATGTTTGGCAATTCGCGGAATCGTGCCCT
* * * * * * * * *
85595608 ATCGTGCTGGGTTGCAATCTCCCGTTTGTTCAAAATAATTGAATATCTCTTCGGAATTTCA
63 AACGTGTTGGGTTACAATTTCGCGTTTGCTCAAAATAATCGAATATCCCTTCGAAATTTCA
85595669 CTCGTGTTTT
Statistics
Matches: 214, Mismatches: 35, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
130 7 0.03
131 115 0.54
132 91 0.43
133 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (130 bp):
CTTTAAAAACTCTTCAAAACGAGAAGAAATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAAC
GTGTTGGGTTACAATTTCGCGTTTGCTCAAAATAATCGAATATCCCTTCGAAATTTCATTCATAT
Found at i:85596508 original size:101 final size:100
Alignment explanation
Indices: 85596321--85596515 Score: 254
Period size: 101 Copynumber: 1.9 Consensus size: 100
85596311 TGATTAGTAA
*
85596321 AAAATAAGTAAAATAAAAATAAAAGAGATTTTAAAATTGAAAAGTTAAATTAAAACTAAAACTAT
1 AAAATAAGTAAAATAAAAATAAAAGAGATTTTAAAATTGAAAAATTAAATTAAAACTAAAACTAT
* *
85596386 TGAAATAAATACCATTTATAAAATTTTAAAAAGAAAT
66 TGAAAGAAAT--CATTTATAAAAGTTTAAAAAGAAAT
* *
85596423 AAAATAAGTAAAAT-AAAATAAAAGGGATTTGT-AAATT-AAAAATTAAAATTAAAATTAAAACT
1 AAAATAAGTAAAATAAAAATAAAAGAGATTT-TAAAATTGAAAAATT-AAATTAAAACTAAAACT
85596485 ATTGAAAGAAAT-ATTTCAAATAAAAGTTTAA
64 ATTGAAAGAAATCATTT---ATAAAAGTTTAA
85596516 CAAATCAATA
Statistics
Matches: 83, Mismatches: 5, Indels: 11
0.84 0.05 0.11
Matches are distributed among these distances:
98 4 0.05
100 6 0.07
101 58 0.70
102 15 0.18
ACGTcount: A:0.61, C:0.03, G:0.08, T:0.29
Consensus pattern (100 bp):
AAAATAAGTAAAATAAAAATAAAAGAGATTTTAAAATTGAAAAATTAAATTAAAACTAAAACTAT
TGAAAGAAATCATTTATAAAAGTTTAAAAAGAAAT
Found at i:85597562 original size:38 final size:39
Alignment explanation
Indices: 85597478--85597612 Score: 116
Period size: 39 Copynumber: 3.4 Consensus size: 39
85597468 ACCAATATGG
*
85597478 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
* * *
85597517 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAGTTGA
* * * *
85597555 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATA-TAGTGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAATAGT--TGA
*
85597596 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
85597613 ACTCGAGGTC
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
38 19 0.25
39 36 0.48
40 4 0.05
41 16 0.21
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
Found at i:85599194 original size:5 final size:5
Alignment explanation
Indices: 85599176--85599246 Score: 133
Period size: 5 Copynumber: 14.0 Consensus size: 5
85599166 TTTCTTTTAT
85599176 ATATA ATAATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA AT-ATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
85599227 ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA
85599247 CTTAATTATT
Statistics
Matches: 65, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
5 60 0.92
6 5 0.08
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:85599751 original size:30 final size:30
Alignment explanation
Indices: 85599715--85599773 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
85599705 AAGAGAATAT
85599715 GTATTTTTATCAATCAATAGGGGTGTTTAC
1 GTATTTTTATCAATCAATAGGGGTGTTTAC
* *
85599745 GTATTTTTATTAATTAATAGGGGTGTTTA
1 GTATTTTTATCAATCAATAGGGGTGTTTA
85599774 TAATGCTTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.27, C:0.05, G:0.20, T:0.47
Consensus pattern (30 bp):
GTATTTTTATCAATCAATAGGGGTGTTTAC
Found at i:85619046 original size:33 final size:33
Alignment explanation
Indices: 85619009--85619077 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
85618999 AAAATCAGAG
85619009 AAAGAAAAAGTAAGAGGCTTACATAATACACTC
1 AAAGAAAAAGTAAGAGGCTTACATAATACACTC
85619042 AAAGAAAAAGTAAGAGGCTTACATAATACACTC
1 AAAGAAAAAGTAAGAGGCTTACATAATACACTC
85619075 AAA
1 AAA
85619078 CCTGACAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.54, C:0.14, G:0.14, T:0.17
Consensus pattern (33 bp):
AAAGAAAAAGTAAGAGGCTTACATAATACACTC
Found at i:85622664 original size:20 final size:18
Alignment explanation
Indices: 85622629--85622674 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 18
85622619 GATTCATTCA
85622629 ATTTTTTTATTTTTTATT
1 ATTTTTTTATTTTTTATT
85622647 ATTATTTTTATTTATTTATT
1 ATT-TTTTTATTT-TTTATT
85622667 ATTTTTTT
1 ATTTTTTT
85622675 TCTCTTTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
18 3 0.12
19 14 0.54
20 9 0.35
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (18 bp):
ATTTTTTTATTTTTTATT
Found at i:85622667 original size:17 final size:16
Alignment explanation
Indices: 85622641--85622672 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
85622631 TTTTTTATTT
85622641 TTTATTATTATTTTTA
1 TTTATTATTATTTTTA
85622657 TTTATTTATTATTTTT
1 TTTA-TTATTATTTTT
85622673 TTTCTCTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTATTATTATTTTTA
Found at i:85622675 original size:20 final size:19
Alignment explanation
Indices: 85622630--85622675 Score: 74
Period size: 20 Copynumber: 2.4 Consensus size: 19
85622620 ATTCATTCAA
85622630 TTTTTTTATTTTTTATTAT
1 TTTTTTTATTTTTTATTAT
*
85622649 TATTTTTATTTATTTATTAT
1 TTTTTTTATTT-TTTATTAT
85622669 TTTTTTT
1 TTTTTTT
85622676 CTCTTTTTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 10 0.42
20 14 0.58
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (19 bp):
TTTTTTTATTTTTTATTAT
Found at i:85622859 original size:3 final size:3
Alignment explanation
Indices: 85622853--85622887 Score: 61
Period size: 3 Copynumber: 11.3 Consensus size: 3
85622843 CTACTACGCG
85622853 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT GTAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT T
85622888 TCTTATATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 28 0.90
4 3 0.10
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:85624478 original size:37 final size:37
Alignment explanation
Indices: 85624417--85624562 Score: 215
Period size: 37 Copynumber: 4.0 Consensus size: 37
85624407 TACGTATGAT
* *
85624417 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
85624452 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
**
85624489 CTTTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
* *
85624526 CACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
85624563 TAAAGCTATC
Statistics
Matches: 99, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 87 0.88
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:85624605 original size:52 final size:52
Alignment explanation
Indices: 85624533--85624929 Score: 539
Period size: 52 Copynumber: 7.8 Consensus size: 52
85624523 AGCCACTTAT
* * ** *
85624533 CACTCTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTT
1 CACT-TGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTC
*
85624586 CACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCAC--T-
1 CACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTC
*
85624635 ---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTC
1 CACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTC
*
85624684 CACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTC
1 CACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTC
* ** *
85624736 CACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC--T-
1 CACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTC
*
85624785 ---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTC
1 CACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTC
*
85624834 CACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTC
1 CACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTC
* ** *
85624886 CACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTA
1 CACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTA
85624930 CTTTGTCACT
Statistics
Matches: 312, Mismatches: 20, Indels: 25
0.87 0.06 0.07
Matches are distributed among these distances:
46 83 0.27
48 2 0.01
50 2 0.01
52 221 0.71
53 4 0.01
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (52 bp):
CACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTC
Found at i:85624692 original size:98 final size:98
Alignment explanation
Indices: 85624526--85624947 Score: 493
Period size: 98 Copynumber: 4.3 Consensus size: 98
85624516 TAAGTGTAGC
* * * * *
85624526 CACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACTT
*
85624591 GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
66 GTCACTTGATCAGATAAGTATAGCCGAAGCTAT
* *
85624624 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACTT
85624689 GTCACTTGATCAGATAAGTATAGCCGAAGCTAT
66 GTCACTTGATCAGATAAGTATAGCCGAAGCTAT
* * * *
85624722 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC--T
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTT
85624785 ----TTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
60 CCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
* * *
85624820 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTT
* ** *
85624885 CCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
60 CCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
*
85624924 CAC-T-T-ACTTTGTCACTTCATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
85624948 AGTACTCAAA
Statistics
Matches: 287, Mismatches: 25, Indels: 27
0.85 0.07 0.08
Matches are distributed among these distances:
95 15 0.05
98 191 0.67
99 1 0.00
100 2 0.01
101 2 0.01
102 2 0.01
103 1 0.00
104 73 0.25
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (98 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACTT
GTCACTTGATCAGATAAGTATAGCCGAAGCTAT
Found at i:85624729 original size:150 final size:150
Alignment explanation
Indices: 85624533--85624947 Score: 710
Period size: 150 Copynumber: 2.8 Consensus size: 150
85624523 AGCCACTTAT
* * ** * *
85624533 CACTCTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTTGTCACTT
1 CACT-TGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTGTCACTT
** *
85624598 GATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCG
65 GATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCG
85624663 AAGCTATTACTTATCACTTTC
130 AAGCTATTACTTATCACTTTC
85624684 CACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTGTCACTTG
1 CACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTGTCACTTG
85624749 ATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGA
66 ATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGA
85624814 AGCTATTACTTATCACTTTC
131 AGCTATTACTTATCACTTTC
85624834 CACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTGTCACTTG
1 CACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTGTCACTTG
*
85624899 ATCAGATAAGTGTAGCTAAAGCTACCAC-T-T-ACTTTGTCACTTCATCAGA
66 ATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGA
85624948 AGTACTCAAA
Statistics
Matches: 254, Mismatches: 10, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
147 18 0.07
148 1 0.00
149 1 0.00
150 230 0.91
151 4 0.02
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (150 bp):
CACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTGTCACTTG
ATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGA
AGCTATTACTTATCACTTTC
Found at i:85628127 original size:49 final size:50
Alignment explanation
Indices: 85628072--85628275 Score: 241
Period size: 49 Copynumber: 4.0 Consensus size: 50
85628062 TTCGTTTTCT
*
85628072 CGATGCCATAGTCCAACTATGGTCTTACACGTAATCACA-AATCACATAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
* * *
85628121 CGATGCCATAGCCCAACTATGGTCTTACACGAAATCACA-TATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
* *
85628170 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACACATATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACAC-G--T---A-ATCACACA-ATCACATAC
* * *
85628228 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCACAT
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACAT
85628276 GTTCACATGT
Statistics
Matches: 136, Mismatches: 10, Indels: 17
0.83 0.06 0.10
Matches are distributed among these distances:
49 74 0.54
50 7 0.05
51 7 0.05
52 1 0.01
55 1 0.01
56 6 0.04
57 1 0.01
58 39 0.29
ACGTcount: A:0.32, C:0.30, G:0.14, T:0.24
Consensus pattern (50 bp):
CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
Found at i:85628242 original size:58 final size:59
Alignment explanation
Indices: 85628156--85628274 Score: 231
Period size: 58 Copynumber: 2.0 Consensus size: 59
85628146 TACACGAAAT
85628156 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAT-ATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
85628214 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
85628273 CA
1 CA
85628275 TGTTCACATG
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
58 54 0.90
59 6 0.10
ACGTcount: A:0.32, C:0.31, G:0.13, T:0.24
Consensus pattern (59 bp):
CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
Found at i:85628255 original size:28 final size:28
Alignment explanation
Indices: 85628165--85628255 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
85628155 TCACATATCA
85628165 CTTACCGATGCCATAGCCCAGCTATGGT
1 CTTACCGATGCCATAGCCCAGCTATGGT
* * **
85628193 CTTACACGGAAT-CACATATCACA-CATAT-CA
1 CTTAC-C-G-ATGC-CATAGCCCAGC-TATGGT
85628223 CTTACCGATGCCATAGCCCAGCTATGGT
1 CTTACCGATGCCATAGCCCAGCTATGGT
85628251 CTTAC
1 CTTAC
85628256 ACGGAATCAC
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
27 12 0.26
28 13 0.28
29 2 0.04
30 8 0.17
31 12 0.26
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.25
Consensus pattern (28 bp):
CTTACCGATGCCATAGCCCAGCTATGGT
Found at i:85628793 original size:150 final size:150
Alignment explanation
Indices: 85628632--85628931 Score: 600
Period size: 150 Copynumber: 2.0 Consensus size: 150
85628622 AACATAAACT
85628632 TTTTTTTAACTTATAGTCATTTCTTTTCATACATGAACACATCCATATCACAAATTTTTATACTT
1 TTTTTTTAACTTATAGTCATTTCTTTTCATACATGAACACATCCATATCACAAATTTTTATACTT
85628697 ACCTTTCCAAATTCCAACATAACATGAGCATATTTCATTTATCTCAATATCATTTTTAGCATTAT
66 ACCTTTCCAAATTCCAACATAACATGAGCATATTTCATTTATCTCAATATCATTTTTAGCATTAT
85628762 CGAAAATAGCTCGATTGAAA
131 CGAAAATAGCTCGATTGAAA
85628782 TTTTTTTAACTTATAGTCATTTCTTTTCATACATGAACACATCCATATCACAAATTTTTATACTT
1 TTTTTTTAACTTATAGTCATTTCTTTTCATACATGAACACATCCATATCACAAATTTTTATACTT
85628847 ACCTTTCCAAATTCCAACATAACATGAGCATATTTCATTTATCTCAATATCATTTTTAGCATTAT
66 ACCTTTCCAAATTCCAACATAACATGAGCATATTTCATTTATCTCAATATCATTTTTAGCATTAT
85628912 CGAAAATAGCTCGATTGAAA
131 CGAAAATAGCTCGATTGAAA
85628932 ATCATCTCTG
Statistics
Matches: 150, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
150 150 1.00
ACGTcount: A:0.34, C:0.19, G:0.06, T:0.41
Consensus pattern (150 bp):
TTTTTTTAACTTATAGTCATTTCTTTTCATACATGAACACATCCATATCACAAATTTTTATACTT
ACCTTTCCAAATTCCAACATAACATGAGCATATTTCATTTATCTCAATATCATTTTTAGCATTAT
CGAAAATAGCTCGATTGAAA
Found at i:85629815 original size:46 final size:46
Alignment explanation
Indices: 85629748--85630654 Score: 1697
Period size: 46 Copynumber: 19.6 Consensus size: 46
85629738 TAAGTGTAGC
85629748 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
85629794 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
85629840 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
85629886 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
85629932 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
85629978 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
85630024 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
85630070 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
85630116 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
85630162 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
85630208 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
85630254 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
85630300 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
85630346 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
85630392 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
85630438 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
85630484 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
* **
85630530 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
* * *
85630576 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
*
85630628 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCTCTTGATCAGA
85630655 AGTACTCAAA
Statistics
Matches: 845, Mismatches: 10, Indels: 12
0.97 0.01 0.01
Matches are distributed among these distances:
46 804 0.95
48 1 0.00
50 1 0.00
52 39 0.05
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (46 bp):
CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
Found at i:85635106 original size:46 final size:46
Alignment explanation
Indices: 85634954--85635106 Score: 139
Period size: 47 Copynumber: 3.3 Consensus size: 46
85634944 GTGCCGATGC
* * * * *
85634954 CATGTCCCAGACATGGTCTTACAATGGCTCACATCTCAAGTCGATGC
1 CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGCCGAT-A
* * * *
85635001 CATATCCCAGACATGGTCTTACACTGAC-TATCATCTCGTAGCTGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTTA-CATCTCG-AGCCGATA
* ** *
85635048 CGTGTCTTAGACAT-GTCTTACACTGGCTTACGTCTCGAGGCCGATA
1 CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGA-GCCGATA
85635094 CATGTCCCAGACA
1 CATGTCCCAGACA
85635107 AGTCTTAAAC
Statistics
Matches: 83, Mismatches: 19, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
45 1 0.01
46 34 0.41
47 43 0.52
48 5 0.06
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (46 bp):
CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGCCGATA
Found at i:85642676 original size:47 final size:47
Alignment explanation
Indices: 85642588--85642677 Score: 119
Period size: 47 Copynumber: 1.9 Consensus size: 47
85642578 GGTAAGTTGC
* *
85642588 CGATGCCATGTCCCAGACACAGTCTTACACTAGCTCACATCTCAAGT
1 CGATGCCATATCCCAGACACAGTCTTACACTAACTCACATCTCAAGT
* **
85642635 CGATGTCATATCCCAGACATGGTCTTACACTAACT-ATCATCTC
1 CGATGCCATATCCCAGACACAGTCTTACACTAACTCA-CATCTC
85642678 GTAGCCGATG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
46 1 0.03
47 36 0.97
ACGTcount: A:0.28, C:0.32, G:0.13, T:0.27
Consensus pattern (47 bp):
CGATGCCATATCCCAGACACAGTCTTACACTAACTCACATCTCAAGT
Found at i:85646802 original size:46 final size:47
Alignment explanation
Indices: 85646735--85646955 Score: 292
Period size: 46 Copynumber: 4.8 Consensus size: 47
85646725 TGTAACCCGC
85646735 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGA-TCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGAGTCACAT
85646781 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGA-TCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGAGTCACAT
* *
85646827 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CGAGTCACAT
* * * * * *
85646877 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGAC-ATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGAGTCACAT
*
85646920 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
85646956 ATGCTCAACC
Statistics
Matches: 157, Mismatches: 11, Indels: 14
0.86 0.06 0.08
Matches are distributed among these distances:
43 5 0.03
44 2 0.01
45 2 0.01
46 110 0.70
47 27 0.17
48 3 0.02
49 3 0.02
50 5 0.03
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGAGTCACAT
Found at i:85646929 original size:93 final size:95
Alignment explanation
Indices: 85646735--85646959 Score: 311
Period size: 93 Copynumber: 2.4 Consensus size: 95
85646725 TGTAACCCGC
*
85646735 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CGATCACATCCATAAGTGAACTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCGATCACATCCATAAGCGAACTCGG
*
85646797 ACTCAACTCAACGAGCTCGGGCGATCACAT
66 ACTCAACTCAACGAGCTCGGACGATCACAT
* * *
85646827 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT-C-TCA-CGAACTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCGA-TCACATCCATAAGCGAACTCG
* *
85646889 GACTCAACTCAACGAGTTCGGAC-ATTCGCAT
65 GACTCAACTCAACGAGCTCGGACGA-TCACAT
*
85646920 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC
85646960 TCAACCATCC
Statistics
Matches: 120, Mismatches: 8, Indels: 9
0.88 0.06 0.07
Matches are distributed among these distances:
92 37 0.31
93 72 0.60
94 3 0.03
95 3 0.03
96 5 0.04
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (95 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCGATCACATCCATAAGCGAACTCGG
ACTCAACTCAACGAGCTCGGACGATCACAT
Found at i:85658314 original size:29 final size:29
Alignment explanation
Indices: 85658276--85658333 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
85658266 TGGTTTCTGC
85658276 GAACTATGCGATCGATTTCTTTGTCAAAA
1 GAACTATGCGATCGATTTCTTTGTCAAAA
*
85658305 GAACTGTGCGATCGATTTCTTTGTCAAAA
1 GAACTATGCGATCGATTTCTTTGTCAAAA
85658334 AGTAGTGGTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.34
Consensus pattern (29 bp):
GAACTATGCGATCGATTTCTTTGTCAAAA
Done.