Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 259 of 322
Found at i:85988562 original size:40 final size:40
Alignment explanation
Indices: 85988359--85988562 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
85988349 CGGAATTTAA
** *
85988359 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
85988399 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
85988439 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
85988478 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
85988518 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
85988558 CCGGA
1 CCGGA
85988563 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:85996430 original size:79 final size:78
Alignment explanation
Indices: 85996328--85996550 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
85996318 GCTCCTCGTT
* *
85996328 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
85996393 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
85996408 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
85996472 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * * *
85996486 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
85996549 GA
63 GA
85996551 CATCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
78 45 0.36
79 60 0.48
80 20 0.16
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:85996445 original size:39 final size:40
Alignment explanation
Indices: 85996328--85996550 Score: 280
Period size: 39 Copynumber: 5.7 Consensus size: 40
85996318 GCTCCTCGTT
* *
85996328 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
85996368 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
85996408 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
85996447 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
85996486 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
85996527 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
85996551 CATCATTCAA
Statistics
Matches: 167, Mismatches: 10, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.01
39 88 0.53
40 67 0.40
41 10 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:85999880 original size:15 final size:17
Alignment explanation
Indices: 85999860--85999893 Score: 54
Period size: 15 Copynumber: 2.1 Consensus size: 17
85999850 TATATTATTA
85999860 AAAATTG-AAT-AAGTT
1 AAAATTGTAATGAAGTT
85999875 AAAATTGTAATGAAGTT
1 AAAATTGTAATGAAGTT
85999892 AA
1 AA
85999894 CATTTATTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
16 3 0.18
17 7 0.41
ACGTcount: A:0.53, C:0.00, G:0.15, T:0.32
Consensus pattern (17 bp):
AAAATTGTAATGAAGTT
Found at i:86005298 original size:21 final size:20
Alignment explanation
Indices: 86005274--86005325 Score: 77
Period size: 20 Copynumber: 2.5 Consensus size: 20
86005264 TTATGCCACA
*
86005274 TCAGTATTCTTATCTTGAATT
1 TCAGTATT-TTATCCTGAATT
*
86005295 TCAGGATTTTATCCTGAATT
1 TCAGTATTTTATCCTGAATT
86005315 TCAGTATTTTA
1 TCAGTATTTTA
86005326 ATTTGGATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 21 0.75
21 7 0.25
ACGTcount: A:0.25, C:0.13, G:0.12, T:0.50
Consensus pattern (20 bp):
TCAGTATTTTATCCTGAATT
Found at i:86020784 original size:17 final size:16
Alignment explanation
Indices: 86020723--86020785 Score: 56
Period size: 17 Copynumber: 3.8 Consensus size: 16
86020713 GTTCATTTAC
*
86020723 TTATTTATATATATATA
1 TTATTTATTTAT-TATA
* *
86020740 TTATTCATTTA-TATT
1 TTATTTATTTATTATA
*
86020755 TTATTTTAATTATTATA
1 TTA-TTTATTTATTATA
86020772 TTCATTTATTTATT
1 TT-ATTTATTTATT
86020786 GTTCTTTCAT
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
15 6 0.17
16 6 0.17
17 23 0.64
18 1 0.03
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (16 bp):
TTATTTATTTATTATA
Found at i:86020818 original size:28 final size:28
Alignment explanation
Indices: 86020787--86020852 Score: 132
Period size: 28 Copynumber: 2.4 Consensus size: 28
86020777 TTATTTATTG
86020787 TTCTTTCATTTCTTTTTAAATTTTTACT
1 TTCTTTCATTTCTTTTTAAATTTTTACT
86020815 TTCTTTCATTTCTTTTTAAATTTTTACT
1 TTCTTTCATTTCTTTTTAAATTTTTACT
86020843 TTCTTTCATT
1 TTCTTTCATT
86020853 GATTATTTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.17, C:0.15, G:0.00, T:0.68
Consensus pattern (28 bp):
TTCTTTCATTTCTTTTTAAATTTTTACT
Found at i:86021731 original size:28 final size:28
Alignment explanation
Indices: 86021691--86021745 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
86021681 GCGTTATGAG
*
86021691 GGTGCTAACCCTTCCTCGTACGTAACTA
1 GGTGCTAACCCTTCCTCGTAAGTAACTA
*
86021719 GGTGCTAACCCTTCCTTGTAAGTAACT
1 GGTGCTAACCCTTCCTCGTAAGTAACT
86021746 GACTTCCGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.22, C:0.29, G:0.18, T:0.31
Consensus pattern (28 bp):
GGTGCTAACCCTTCCTCGTAAGTAACTA
Found at i:86026539 original size:34 final size:34
Alignment explanation
Indices: 86026501--86026568 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
86026491 GTTTCAGAGG
86026501 AAAGACCCGAAAGGATGAGGAACTACTATGAGTT
1 AAAGACCCGAAAGGATGAGGAACTACTATGAGTT
* *
86026535 AAAGACCCGAAAGGATGAGGAACTATTGTGAGTT
1 AAAGACCCGAAAGGATGAGGAACTACTATGAGTT
86026569 CCATGTGGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.40, C:0.13, G:0.28, T:0.19
Consensus pattern (34 bp):
AAAGACCCGAAAGGATGAGGAACTACTATGAGTT
Found at i:86027863 original size:51 final size:51
Alignment explanation
Indices: 86027796--86028003 Score: 317
Period size: 51 Copynumber: 4.1 Consensus size: 51
86027786 TCACATTTAC
* *
86027796 CACTTGTCACTGATCAAATAAGTGTAGCTAAAGTTACTACTTATCACTTGT
1 CACTTGTCACTGATCAAATAAGTGTAGCTAAAGCTACCACTTATCACTTGT
86027847 CACTTGTCACTGATCAAATAAGTGTAGCTAAAGCTACCACTTATCACTTGT
1 CACTTGTCACTGATCAAATAAGTGTAGCTAAAGCTACCACTTATCACTTGT
* * * * *
86027898 CACTTGTCACTAATCAGATAAGTGTAGTTGAAGCTGCCACTTATCACTTGT
1 CACTTGTCACTGATCAAATAAGTGTAGCTAAAGCTACCACTTATCACTTGT
* * * *
86027949 CACTTGTCACTGATCAGATAAGTGTAGCTGAGGCTACCGCTTATCACTTGT
1 CACTTGTCACTGATCAAATAAGTGTAGCTAAAGCTACCACTTATCACTTGT
86028000 CACT
1 CACT
86028004 GATCAGAAAT
Statistics
Matches: 145, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 145 1.00
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (51 bp):
CACTTGTCACTGATCAAATAAGTGTAGCTAAAGCTACCACTTATCACTTGT
Found at i:86029239 original size:89 final size:89
Alignment explanation
Indices: 86029114--86029469 Score: 712
Period size: 89 Copynumber: 4.0 Consensus size: 89
86029104 CAAACTCTTT
86029114 CCTTAGGTCTAGTTTCCTTTTAAACCCTCTTTCTTTTATCATTTAAGCTATTTAATCATTTCCCA
1 CCTTAGGTCTAGTTTCCTTTTAAACCCTCTTTCTTTTATCATTTAAGCTATTTAATCATTTCCCA
86029179 TAATTTTACATTTGTTACAATTTA
66 TAATTTTACATTTGTTACAATTTA
86029203 CCTTAGGTCTAGTTTCCTTTTAAACCCTCTTTCTTTTATCATTTAAGCTATTTAATCATTTCCCA
1 CCTTAGGTCTAGTTTCCTTTTAAACCCTCTTTCTTTTATCATTTAAGCTATTTAATCATTTCCCA
86029268 TAATTTTACATTTGTTACAATTTA
66 TAATTTTACATTTGTTACAATTTA
86029292 CCTTAGGTCTAGTTTCCTTTTAAACCCTCTTTCTTTTATCATTTAAGCTATTTAATCATTTCCCA
1 CCTTAGGTCTAGTTTCCTTTTAAACCCTCTTTCTTTTATCATTTAAGCTATTTAATCATTTCCCA
86029357 TAATTTTACATTTGTTACAATTTA
66 TAATTTTACATTTGTTACAATTTA
86029381 CCTTAGGTCTAGTTTCCTTTTAAACCCTCTTTCTTTTATCATTTAAGCTATTTAATCATTTCCCA
1 CCTTAGGTCTAGTTTCCTTTTAAACCCTCTTTCTTTTATCATTTAAGCTATTTAATCATTTCCCA
86029446 TAATTTTACATTTGTTACAATTTA
66 TAATTTTACATTTGTTACAATTTA
86029470 GTCTTTTTAT
Statistics
Matches: 267, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
89 267 1.00
ACGTcount: A:0.25, C:0.20, G:0.06, T:0.49
Consensus pattern (89 bp):
CCTTAGGTCTAGTTTCCTTTTAAACCCTCTTTCTTTTATCATTTAAGCTATTTAATCATTTCCCA
TAATTTTACATTTGTTACAATTTA
Found at i:86034166 original size:14 final size:14
Alignment explanation
Indices: 86034147--86034173 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
86034137 TATCAAAAAA
86034147 ATAATTAAGAACAC
1 ATAATTAAGAACAC
86034161 ATAATTAAGAACA
1 ATAATTAAGAACA
86034174 AGTCAATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.11, G:0.07, T:0.22
Consensus pattern (14 bp):
ATAATTAAGAACAC
Found at i:86042879 original size:24 final size:24
Alignment explanation
Indices: 86042852--86042935 Score: 87
Period size: 24 Copynumber: 3.5 Consensus size: 24
86042842 GCGTTTCCTT
*
86042852 GCACACATAGTGCTATATAATCTC
1 GCACACATAGTGCCATATAATCTC
* * * *
86042876 GCACACATAGTGCCATGTAGTTTTT
1 GCACACATAGTGCCATATA-ATCTC
** *
86042901 GCACACATAGTGCCGCATAACCTC
1 GCACACATAGTGCCATATAATCTC
86042925 GCACACATAGT
1 GCACACATAGT
86042936 ACTGAAATTT
Statistics
Matches: 47, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
24 29 0.62
25 18 0.38
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (24 bp):
GCACACATAGTGCCATATAATCTC
Found at i:86042903 original size:49 final size:47
Alignment explanation
Indices: 86042803--86042935 Score: 135
Period size: 49 Copynumber: 2.7 Consensus size: 47
86042793 TTAAAGGTCC
* * *
86042803 GCACACATAGTGCTCT-TACTCATTCGCACACATAGTGCCGCGTTTCCTT
1 GCACACATAGTGCTATATAATC--TCGCACACATAGTGCCGAGTTT-CTT
86042852 GCACACATAGTGCTATATAATCTCGCACACATAGTGCCATGTAGTTT-TT
1 GCACACATAGTGCTATATAATCTCGCACACATAGTGCC--G-AGTTTCTT
*** *
86042901 GCACACATAGTGCCGCATAACCTCGCACACATAGT
1 GCACACATAGTGCTATATAATCTCGCACACATAGT
86042936 ACTGAAATTT
Statistics
Matches: 73, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
48 16 0.22
49 48 0.66
50 5 0.07
51 4 0.05
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (47 bp):
GCACACATAGTGCTATATAATCTCGCACACATAGTGCCGAGTTTCTT
Found at i:86047154 original size:7 final size:7
Alignment explanation
Indices: 86047142--86047167 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
86047132 ATCACATTTA
86047142 TCACTTG
1 TCACTTG
86047149 TCACTTG
1 TCACTTG
86047156 TCACTTG
1 TCACTTG
86047163 TCACT
1 TCACT
86047168 AATCAGATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.31, G:0.12, T:0.42
Consensus pattern (7 bp):
TCACTTG
Found at i:86047219 original size:51 final size:51
Alignment explanation
Indices: 86047143--86047306 Score: 216
Period size: 51 Copynumber: 3.4 Consensus size: 51
86047133 TCACATTTAT
* *
86047143 CACTTGTCACTTGTCACTTGTCACTAATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTGTCACTTGTCACTAATCAGATAAGTGTAGCTGAAGCTAC
* *
86047194 CACTTATCACTTGTCACTTGTCACTAGTCAGATAAGTGTAGCTGAAGTTAC
1 CACTTATCACTTGTCACTTGTCACTAATCAGATAAGTGTAGCTGAAGCTAC
* *
86047245 CACTTATCACTTGTCAC-TG------ATCAGATAATTGTAGCTGAGGCTAC
1 CACTTATCACTTGTCACTTGTCACTAATCAGATAAGTGTAGCTGAAGCTAC
*
86047289 CGCTTATCACTTGTCACT
1 CACTTATCACTTGTCACT
86047307 GATTAGAAGT
Statistics
Matches: 103, Mismatches: 9, Indels: 8
0.86 0.08 0.07
Matches are distributed among these distances:
44 37 0.36
50 2 0.02
51 64 0.62
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (51 bp):
CACTTATCACTTGTCACTTGTCACTAATCAGATAAGTGTAGCTGAAGCTAC
Found at i:86047249 original size:44 final size:44
Alignment explanation
Indices: 86047150--86047306 Score: 163
Period size: 44 Copynumber: 3.4 Consensus size: 44
86047140 TATCACTTGT
* * * *
86047150 CACTTGTCACTTGTCACTAATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTGTCACTAGTCAGATAAGTGTAGCTGAAGTTAC
86047194 CACTTATCACTTGTCACTTGTCACTAGTCAGATAAGTGTAGCTGAAGTTAC
1 CAC-T-T-A----TCACTTGTCACTAGTCAGATAAGTGTAGCTGAAGTTAC
* * *
86047245 CACTTATCACTTGTCACT-GATCAGATAATTGTAGCTGAGGCTAC
1 CACTTATCACTTGTCACTAG-TCAGATAAGTGTAGCTGAAGTTAC
*
86047289 CGCTTATCACTTGTCACT
1 CACTTATCACTTGTCACT
86047307 GATTAGAAGT
Statistics
Matches: 97, Mismatches: 8, Indels: 16
0.80 0.07 0.13
Matches are distributed among these distances:
43 1 0.01
44 53 0.55
45 1 0.01
46 1 0.01
48 1 0.01
49 1 0.01
50 1 0.01
51 38 0.39
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (44 bp):
CACTTATCACTTGTCACTAGTCAGATAAGTGTAGCTGAAGTTAC
Found at i:86056047 original size:46 final size:46
Alignment explanation
Indices: 86055995--86056437 Score: 564
Period size: 46 Copynumber: 9.6 Consensus size: 46
86055985 GCTTTCTGAA
* * *
86055995 ATGAAATGTGTAAGACTATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
86056041 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** *
86056087 ATGAAATTTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
86056133 ATGAAATGTGTAAGACCATGGTTGAAAGATAACATGGCAACATGAA
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
86056179 ATGAAATGTGTAAGACCATGGTGGAAAGATACCACGGTAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** *
86056225 ATGAAATGAACAAGACCATGGTTGAAAAATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * *
86056271 GGGAAATAAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * * *
86056317 GGGAAATGAATAGGACCATGGTTGAAAGATACTATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** *
86056363 ATGAAATGAACAAGACCATGGTTGAAAGATACCATGGTAACATGA-
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
86056408 TTGGAATTGAGTAAGACCATAGTTGAAAGA
1 AT-GAAATGAGTAAGACCATGGTTGAAAGA
86056438 CACTATGACA
Statistics
Matches: 353, Mismatches: 43, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
45 1 0.00
46 352 1.00
ACGTcount: A:0.41, C:0.14, G:0.25, T:0.21
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:86068475 original size:40 final size:40
Alignment explanation
Indices: 86068392--86068611 Score: 268
Period size: 40 Copynumber: 5.5 Consensus size: 40
86068382 ACCCAAGTAT
** * *
86068392 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
86068430 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
86068470 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
86068510 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * *
86068550 CTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
86068590 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
86068612 CATTCGAATA
Statistics
Matches: 156, Mismatches: 21, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 16 0.10
40 127 0.81
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:86071883 original size:44 final size:44
Alignment explanation
Indices: 86071772--86072163 Score: 318
Period size: 44 Copynumber: 8.8 Consensus size: 44
86071762 ATAATCGTGG
* * * * *
86071772 CAAATCTTATCTCCTTAAAGTTGCAGTTGAGCAGACTGAAGATA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATA
* * * * *
86071816 GTAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTA
1 -CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATA
* * * * * *
86071861 TAAACCTTATCTCCCTGAAGTTGTAATGAAGCA-AGTTAAAAATAAA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAAAGAT--A
* * **
86071907 CAAATCTTCTCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCCA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATA
* * * * * * *
86071951 TAAACCTAATCTCCCTGAAGTTGCAGTGGAACAGGTTGAAGTTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATA
* * * *
86071995 CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGTTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATA
* * * *
86072039 CAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATA
* * * * *
86072083 GCAAATCTTATCTCTCTGAAGTTGTAGTAGAACAGATTAAAGCTA
1 -CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATA
* * * * * *
86072128 TAAACCTTATTTCTCTGAAGTTGCAATGGAGAAGAT
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
86072164 GGAAGTGAAA
Statistics
Matches: 276, Mismatches: 66, Indels: 11
0.78 0.19 0.03
Matches are distributed among these distances:
43 1 0.00
44 172 0.62
45 70 0.25
46 32 0.12
47 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (44 bp):
CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATA
Found at i:86072013 original size:134 final size:135
Alignment explanation
Indices: 86071772--86072155 Score: 371
Period size: 133 Copynumber: 2.9 Consensus size: 135
86071762 ATAATCGTGG
* * * * * * * *
86071772 CAAATCTTATCTCCTTAAAGTTGCAGTTGAGCAGACTGAAGATAGTAGATCTTATCTCTCTGAAG
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAAGACAGTAAACCTAATCTCCCTGAAG
* *
86071837 TTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCTGAAGTTGTAATGAAGCAAGTTAAAA
66 TTGCAGTAGAACAGATTAAAGCTACAAACCTTATCTCCCTGAAGTTGTAATGAAGCAAGTTAAAA
86071902 ATAAA
131 ATAAA
* * *
86071907 CAAATCTTCTCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCCA-TAAACCTAATCTCCCTGAAG
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAAGACAGTAAACCTAATCTCCCTGAAG
* * * * ** * * * * *
86071971 TTGCAGTGGAACAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAG-TAGATT-GA
66 TTGCAGTAGAACAGATTAAAGCTACAAACCTTATCTCCCTGAAGTTGTAATGAAGCAAG-TTAAA
* *
86072034 AGT-TA
130 AATAAA
* * * * * * * * *
86072039 CAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATAGCAAATCTTATCTCTCTGAAG
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAAGACAGTAAACCTAATCTCCCTGAAG
* * * * *
86072104 TTGTAGTAGAACAGATTAAAGCTATAAACCTTATTTCTCTGAAGTTGCAATG
66 TTGCAGTAGAACAGATTAAAGCTACAAACCTTATCTCCCTGAAGTTGTAATG
86072156 GAGAAGATGG
Statistics
Matches: 198, Mismatches: 49, Indels: 6
0.78 0.19 0.02
Matches are distributed among these distances:
132 37 0.19
133 62 0.31
134 62 0.31
135 37 0.19
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (135 bp):
CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAAGACAGTAAACCTAATCTCCCTGAAG
TTGCAGTAGAACAGATTAAAGCTACAAACCTTATCTCCCTGAAGTTGTAATGAAGCAAGTTAAAA
ATAAA
Found at i:86072137 original size:89 final size:89
Alignment explanation
Indices: 86071777--86072158 Score: 399
Period size: 89 Copynumber: 4.3 Consensus size: 89
86071767 CGTGGCAAAT
* * * * * *
86071777 CTTATCTCCTTAAAGTTGCAGTTGAGCAGACTGAAGATAGTAGATCTTATCTCTCTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATCTCCCTGAAGTTGCA
86071842 GTAGAGCAGATTAAAGCTATAAAC
66 GTAGAGCAGATTAAAGCTATAAAC
* * * * * * * * *
86071866 CTTATCTCCCTGAAGTTGTAATGAAGCA-AGTTAAAAATAAACAAATCTTCTCTCCCTAAAGTTG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CTGAAGAT-AGCAAATCTTATCTCCCTGAAGTTG
* *
86071930 CAGTGGAGCAGATTAAAGCCATAAAC
64 CAGTAGAGCAGATTAAAGCTATAAAC
* * ** * *
86071956 CTAATCTCCCTGAAGTTGCAGTGGAACAGGTTGAAGTTA-CAAGTCTTATCTCCCTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATCTCCCTGAAGTTGCA
* * * * * **
86072020 GTGGAGTAGATTGAAGTTACAAGT
66 GTAGAGCAGATTAAAGCTATAAAC
* * *
86072044 CTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATAGCAAATCTTATCTCTCTGAAGTTGTA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATCTCCCTGAAGTTGCA
*
86072109 GTAGAACAGATTAAAGCTATAAAC
66 GTAGAGCAGATTAAAGCTATAAAC
* * *
86072133 CTTATTTCTCTGAAGTTGCAATGGAG
1 CTTATCTCCCTGAAGTTGCAGTGGAG
86072159 AAGATGGAAG
Statistics
Matches: 232, Mismatches: 57, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
88 73 0.31
89 88 0.38
90 71 0.31
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (89 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATCTCCCTGAAGTTGCA
GTAGAGCAGATTAAAGCTATAAAC
Found at i:86073645 original size:12 final size:12
Alignment explanation
Indices: 86073628--86073654 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
86073618 TTTTATTTTA
86073628 ATTCATTTATTT
1 ATTCATTTATTT
86073640 ATTCATTTATTT
1 ATTCATTTATTT
86073652 ATT
1 ATT
86073655 TACTTGTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (12 bp):
ATTCATTTATTT
Found at i:86076771 original size:57 final size:57
Alignment explanation
Indices: 86076708--86076870 Score: 229
Period size: 57 Copynumber: 2.8 Consensus size: 57
86076698 GAATAAAGAG
*
86076708 GAACAAGAAATATTCTCTAGCGAAAACAGTAAACATTCCCTGCAAGAAAAGACAAGT
1 GAACAAGAAATATTCTCTAGCGAAAACAGTAAATATTCCCTGCAAGAAAAGACAAGT
* *
86076765 GAACAAGAAATATTTTCTAGC-ATAAACAGTAAATATTCCCTGCAAGAAAAGACGAGT
1 GAACAAGAAATATTCTCTAGCGA-AAACAGTAAATATTCCCTGCAAGAAAAGACAAGT
* * * * *
86076822 GAACAGGAAATATTCTTTGGAGAAAATAGTAAATATTCCCTAGCAAGAA
1 GAACAAGAAATATTCTCTAGCGAAAACAGTAAATATTCCCT-GCAAGAA
86076871 CAGTAAGATG
Statistics
Matches: 94, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
56 1 0.01
57 85 0.90
58 8 0.09
ACGTcount: A:0.46, C:0.16, G:0.17, T:0.21
Consensus pattern (57 bp):
GAACAAGAAATATTCTCTAGCGAAAACAGTAAATATTCCCTGCAAGAAAAGACAAGT
Found at i:86076974 original size:20 final size:20
Alignment explanation
Indices: 86076949--86076987 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
86076939 TATTCTCTGA
86076949 AAAGTTTCAATTATGTAATC
1 AAAGTTTCAATTATGTAATC
86076969 AAAGTTTCAATTATGTAAT
1 AAAGTTTCAATTATGTAAT
86076988 GATATAAGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (20 bp):
AAAGTTTCAATTATGTAATC
Found at i:86077131 original size:17 final size:17
Alignment explanation
Indices: 86077109--86077162 Score: 76
Period size: 18 Copynumber: 3.2 Consensus size: 17
86077099 ATCAAAACTC
86077109 GTTTCTCAAAATTTTAA
1 GTTTCTCAAAATTTTAA
*
86077126 GTTTCTCCAAATTTTTAA
1 GTTTCT-CAAAATTTTAA
86077144 GTTT-TCAAAA-TTTAA
1 GTTTCTCAAAATTTTAA
86077159 GTTT
1 GTTT
86077163 TAAATTATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
15 9 0.26
16 4 0.12
17 7 0.21
18 14 0.41
ACGTcount: A:0.31, C:0.11, G:0.07, T:0.50
Consensus pattern (17 bp):
GTTTCTCAAAATTTTAA
Found at i:86077141 original size:18 final size:18
Alignment explanation
Indices: 86077109--86077156 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
86077099 ATCAAAACTC
*
86077109 GTTTCT-CAAAATTTTAA
1 GTTTCTCCAAATTTTTAA
86077126 GTTTCTCCAAATTTTTAA
1 GTTTCTCCAAATTTTTAA
*
86077144 GTTT-TCAAAATTT
1 GTTTCTCCAAATTT
86077157 AAGTTTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 14 0.50
18 14 0.50
ACGTcount: A:0.31, C:0.12, G:0.06, T:0.50
Consensus pattern (18 bp):
GTTTCTCCAAATTTTTAA
Found at i:86077860 original size:20 final size:18
Alignment explanation
Indices: 86077813--86077920 Score: 64
Period size: 20 Copynumber: 5.8 Consensus size: 18
86077803 CAAGATAAAG
86077813 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
86077830 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
** *
86077850 ATTAAATTAATAAAATACT
1 ATTAAATTAAT-ATTTAAT
86077869 ATTAAGA-TAAGTA-TTAA-
1 ATTAA-ATTAA-TATTTAAT
*
86077886 ATTAAATTTAATATTAAATT
1 ATTAAA-TTAATATTTAA-T
*
86077906 ATTAAAATAATATTT
1 ATTAAATTAATATTT
86077921 TTTTTGAAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 22
0.69 0.09 0.22
Matches are distributed among these distances:
16 1 0.01
17 15 0.21
18 9 0.13
19 21 0.30
20 24 0.34
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:86078251 original size:32 final size:32
Alignment explanation
Indices: 86078215--86078278 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
86078205 AATTTTTGGG
86078215 TCTATTAGGCCAATTTTCTAACTTGAAAATTA
1 TCTATTAGGCCAATTTTCTAACTTGAAAATTA
86078247 TCTATTAGGCCAATTTTCTAACTTGAAAATTA
1 TCTATTAGGCCAATTTTCTAACTTGAAAATTA
86078279 ACTTCCAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.34, C:0.16, G:0.09, T:0.41
Consensus pattern (32 bp):
TCTATTAGGCCAATTTTCTAACTTGAAAATTA
Found at i:86080580 original size:43 final size:42
Alignment explanation
Indices: 86080514--86080631 Score: 114
Period size: 43 Copynumber: 2.8 Consensus size: 42
86080504 AGCTCATACA
86080514 ATGCCAAC-GTCCTAGAC-GTGGTCTTACATGTAATCAAATATCG
1 ATGCC-ACTGTCCTAGACAG-GGTCTTACATGTAATCAAATAT-G
*** *
86080557 ATGCCACTGTCCTAGACAGGGTCTTACACAAAATTAAATATG
1 ATGCCACTGTCCTAGACAGGGTCTTACATGTAATCAAATATG
* * * * *
86080599 ATGTCAATGTCCCAGATATGGTCTTACATGTAA
1 ATGCCACTGTCCTAGACAGGGTCTTACATGTAA
86080632 ATCATAAGGC
Statistics
Matches: 61, Mismatches: 12, Indels: 5
0.78 0.15 0.06
Matches are distributed among these distances:
42 28 0.46
43 32 0.52
44 1 0.02
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (42 bp):
ATGCCACTGTCCTAGACAGGGTCTTACATGTAATCAAATATG
Found at i:86081538 original size:29 final size:29
Alignment explanation
Indices: 86081496--86081554 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
86081486 TATTTTCGGC
*
86081496 AACCATATATGAAAATGAACGAAAATATG
1 AACCATATATGAAAATGAACAAAAATATG
86081525 AACCATATATGAAAATGAACAAAAATATG
1 AACCATATATGAAAATGAACAAAAATATG
86081554 A
1 A
86081555 CTTTGGTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.58, C:0.10, G:0.12, T:0.20
Consensus pattern (29 bp):
AACCATATATGAAAATGAACAAAAATATG
Found at i:86087697 original size:38 final size:38
Alignment explanation
Indices: 86087655--86087727 Score: 146
Period size: 38 Copynumber: 1.9 Consensus size: 38
86087645 ATCAAACTAT
86087655 AAGTTCAGCCATAATCTAGCCATATCACATGGCATAAC
1 AAGTTCAGCCATAATCTAGCCATATCACATGGCATAAC
86087693 AAGTTCAGCCATAATCTAGCCATATCACATGGCAT
1 AAGTTCAGCCATAATCTAGCCATATCACATGGCAT
86087728 GACATACACT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.36, C:0.26, G:0.14, T:0.25
Consensus pattern (38 bp):
AAGTTCAGCCATAATCTAGCCATATCACATGGCATAAC
Found at i:86090955 original size:126 final size:126
Alignment explanation
Indices: 86090750--86090982 Score: 340
Period size: 126 Copynumber: 1.8 Consensus size: 126
86090740 GAAAAAACTG
* * * * * * *
86090750 ACTCTTATTTAAGCGTTGCCTTAGGCATGGATATCCCAACCTTTATATAAAGAGTTTGCCAAAGC
1 ACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCACAACCCTAAGACAAAGAGTTGGCCAAAGC
* ** *
86090815 GTATGTCGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGGCATAGTATTAGATAAAACCA
66 GTATGCCGAAAAGTCTATCCCAACACTTAAGAAAGTGTCGGCATAGTATTAGATAAAACCA
* *
86090876 ACTCTTATTTAAGCGTTGCCTTAGGCATGCCTATCACAACCCTAAGACAAAGAGTTGGCCAAAGT
1 ACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCACAACCCTAAGACAAAGAGTTGGCCAAAGC
*
86090941 GTTTGCCGAAAAGTCTATCCCAACACTTAAGAAAGTGTCGGC
66 GTATGCCGAAAAGTCTATCCCAACACTTAAGAAAGTGTCGGC
86090983 CCAAAAGTTT
Statistics
Matches: 93, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
126 93 1.00
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.27
Consensus pattern (126 bp):
ACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCACAACCCTAAGACAAAGAGTTGGCCAAAGC
GTATGCCGAAAAGTCTATCCCAACACTTAAGAAAGTGTCGGCATAGTATTAGATAAAACCA
Found at i:86092947 original size:11 final size:11
Alignment explanation
Indices: 86092931--86092972 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
86092921 ACCAGATTTA
*
86092931 TTTTCTTTATT
1 TTTTCTTTCTT
*
86092942 TTTTCTCTCTT
1 TTTTCTTTCTT
*
86092953 CTTTCTTTCTT
1 TTTTCTTTCTT
86092964 TTTT-TTTCT
1 TTTTCTTTCT
86092973 CTTCATTCTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
10 5 0.19
11 21 0.81
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (11 bp):
TTTTCTTTCTT
Found at i:86092973 original size:23 final size:22
Alignment explanation
Indices: 86092932--86092982 Score: 66
Period size: 23 Copynumber: 2.3 Consensus size: 22
86092922 CCAGATTTAT
86092932 TTTCTTTATTTTTTCTCTCTTC
1 TTTCTTTATTTTTTCTCTCTTC
* *
86092954 TTTCTTTCTTTTTTTTTCTCTTC
1 TTTCTTT-ATTTTTTCTCTCTTC
*
86092977 ATTCTT
1 TTTCTT
86092983 CCATGATGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
22 7 0.28
23 18 0.72
ACGTcount: A:0.04, C:0.22, G:0.00, T:0.75
Consensus pattern (22 bp):
TTTCTTTATTTTTTCTCTCTTC
Found at i:86109335 original size:3 final size:3
Alignment explanation
Indices: 86109327--86109385 Score: 54
Period size: 3 Copynumber: 20.7 Consensus size: 3
86109317 GTTGGGAAAT
* * *
86109327 AGA AGA AGA AG- AGA AAA AGTA A-A AAA AGC A-A AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AG-A AGA AGA AGA AGA AGA AGA AGA AGA
86109370 AGA AGA AGA AG- AGA AG
1 AGA AGA AGA AGA AGA AG
86109386 TTGATTTCCT
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
2 7 0.15
3 37 0.80
4 2 0.04
ACGTcount: A:0.68, C:0.02, G:0.29, T:0.02
Consensus pattern (3 bp):
AGA
Found at i:86112208 original size:26 final size:26
Alignment explanation
Indices: 86112121--86112315 Score: 130
Period size: 26 Copynumber: 7.5 Consensus size: 26
86112111 GCACATAGTA
* * *
86112121 CCTGCTAACTAATCACTGGCTCAAAG
1 CCTGCTAAATAAACACTGGCTCAAGG
* * * * * *
86112147 CCTACTAAACAATCACCGGTTCAAAG
1 CCTGCTAAATAAACACTGGCTCAAGG
86112173 -CTGGCTAAATAAACACTGGCTCAAGG
1 CCT-GCTAAATAAACACTGGCTCAAGG
* *
86112199 CCTGCTAAATTAAA-A-TCAGCTCAACG
1 CCTGCTAAA-TAAACACT-GGCTCAAGG
* * *
86112225 CCTGTTAAATAATCA-TCGGCTCAAGA
1 CCTGCTAAATAAACACT-GGCTCAAGG
*
86112251 CCTGCTAAATAAAGACCT-GCTCAAGG
1 CCTGCTAAATAAACA-CTGGCTCAAGG
* * * *
86112277 CCTACTAAATAATCACCGACTCAAGG
1 CCTGCTAAATAAACACTGGCTCAAGG
*
86112303 CATGCTAAATAAA
1 CCTGCTAAATAAA
86112316 GTACATCTTG
Statistics
Matches: 131, Mismatches: 30, Indels: 16
0.74 0.17 0.09
Matches are distributed among these distances:
25 7 0.05
26 117 0.89
27 6 0.05
28 1 0.01
ACGTcount: A:0.37, C:0.27, G:0.15, T:0.22
Consensus pattern (26 bp):
CCTGCTAAATAAACACTGGCTCAAGG
Found at i:86112234 original size:52 final size:53
Alignment explanation
Indices: 86112177--86112316 Score: 153
Period size: 52 Copynumber: 2.7 Consensus size: 53
86112167 TCAAAGCTGG
* * *
86112177 CTAAATAAACACTGGCTCAAGGCCTGCTAAATTAAA-ATCAGCTCAACGCCTG
1 CTAAATAATCACTGGCTCAAGGCCTGCTAAATTAAAGACCAGCTCAACGCCTA
* * * *
86112229 TTAAATAATCA-TCGGCTCAAGACCTGCTAAA-TAAAGACCTGCTCAAGGCCTA
1 CTAAATAATCACT-GGCTCAAGGCCTGCTAAATTAAAGACCAGCTCAACGCCTA
* * *
86112281 CTAAATAATCACCGACTCAAGGCATGCTAAA-TAAAG
1 CTAAATAATCACTGGCTCAAGGCCTGCTAAATTAAAG
86112317 TACATCTTGC
Statistics
Matches: 73, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
51 5 0.07
52 68 0.93
ACGTcount: A:0.39, C:0.25, G:0.15, T:0.21
Consensus pattern (53 bp):
CTAAATAATCACTGGCTCAAGGCCTGCTAAATTAAAGACCAGCTCAACGCCTA
Found at i:86113653 original size:65 final size:64
Alignment explanation
Indices: 86113549--86113678 Score: 188
Period size: 65 Copynumber: 2.0 Consensus size: 64
86113539 CAAAAGGTTT
* *
86113549 ACCTACATCATATCGCGGGGGTATAATACCATTTGAGAGAATTGAGCTAAACACAAGCACTAGAG
1 ACCTACATCATATCGCGGGGGAATAATACCATTTGAGAGAATGGAGCTAAACACAA-CACTAGAG
* * * * *
86113614 ACCTACATCATATTGTGGGGGAATAATATCATTTGAGAGAATGGAGTTAAACACAATACTAGAG
1 ACCTACATCATATCGCGGGGGAATAATACCATTTGAGAGAATGGAGCTAAACACAACACTAGAG
86113678 A
1 A
86113679 TGGCCCATGA
Statistics
Matches: 58, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
64 8 0.14
65 50 0.86
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (64 bp):
ACCTACATCATATCGCGGGGGAATAATACCATTTGAGAGAATGGAGCTAAACACAACACTAGAG
Found at i:86116737 original size:46 final size:47
Alignment explanation
Indices: 86116670--86116763 Score: 181
Period size: 46 Copynumber: 2.0 Consensus size: 47
86116660 AATATATTTA
86116670 ACATATTTCACAAAATTGTTTACTTTATG-AAAAAAAAACCTAAACC
1 ACATATTTCACAAAATTGTTTACTTTATGAAAAAAAAAACCTAAACC
86116716 ACATATTTCACAAAATTGTTTACTTTATGAAAAAAAAAACCTAAACC
1 ACATATTTCACAAAATTGTTTACTTTATGAAAAAAAAAACCTAAACC
86116763 A
1 A
86116764 TTGAACTAAT
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
46 29 0.62
47 18 0.38
ACGTcount: A:0.49, C:0.17, G:0.04, T:0.30
Consensus pattern (47 bp):
ACATATTTCACAAAATTGTTTACTTTATGAAAAAAAAAACCTAAACC
Found at i:86117546 original size:5 final size:5
Alignment explanation
Indices: 86117536--86117567 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
86117526 AACATTGTGA
86117536 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
86117568 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:86117561 original size:9 final size:9
Alignment explanation
Indices: 86117537--86117567 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
86117527 ACATTGTGAA
86117537 AAATAAAAT
1 AAATAAAAT
86117546 AAAATAAAAT
1 -AAATAAAAT
86117556 AAATAAAAT
1 AAATAAAAT
86117565 AAA
1 AAA
86117568 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:86124658 original size:16 final size:17
Alignment explanation
Indices: 86124631--86124663 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
86124621 TATTATAATC
86124631 TATAATATAATAATAGT
1 TATAATATAATAATAGT
*
86124648 TATAA-ATAATAGTAGT
1 TATAATATAATAATAGT
86124664 ACATTATATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.52, C:0.00, G:0.09, T:0.39
Consensus pattern (17 bp):
TATAATATAATAATAGT
Found at i:86128129 original size:12 final size:12
Alignment explanation
Indices: 86128112--86128174 Score: 64
Period size: 12 Copynumber: 5.4 Consensus size: 12
86128102 GATAATTTTA
86128112 TATTAAAATTAT
1 TATTAAAATTAT
86128124 TATT-AAA-TAT
1 TATTAAAATTAT
86128134 TATTAATAATTA-
1 TATTAA-AATTAT
86128146 TATTAATAA-TAT
1 TATTAA-AATTAT
86128158 TATT-AAATTAT
1 TATTAAAATTAT
86128169 ATATTA
1 -TATTA
86128175 TTTTATTAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
10 9 0.20
11 10 0.23
12 23 0.52
13 2 0.05
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (12 bp):
TATTAAAATTAT
Found at i:86128266 original size:56 final size:57
Alignment explanation
Indices: 86128138--86128268 Score: 158
Period size: 56 Copynumber: 2.3 Consensus size: 57
86128128 AAATATTATT
* * * * *
86128138 AATAATTATATTAATAATATTATTAAATTATATATTATTTTATTAAATTGTAGTTAAT
1 AATAATTATATTAA-AATATGATTAAATTATATATTATATTATTAAAATATAGTTAAC
* * *
86128196 AATAATTATGTTAAAATATGATTAAATTATTTATT-TATTATTAAAATATATTTAAC
1 AATAATTATATTAAAATATGATTAAATTATATATTATATTATTAAAATATAGTTAAC
86128252 AATAATCT-TATTAAAAT
1 AATAAT-TATATTAAAAT
86128269 TTAATAACAA
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
56 30 0.48
57 20 0.32
58 13 0.21
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.49
Consensus pattern (57 bp):
AATAATTATATTAAAATATGATTAAATTATATATTATATTATTAAAATATAGTTAAC
Found at i:86128282 original size:25 final size:26
Alignment explanation
Indices: 86128233--86128283 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
86128223 TATTTATTTA
*
86128233 TTATTAAAATATATTTAACAATAATC
1 TTATTAAAATATATATAACAATAATC
*
86128259 TTATTAAAATTTA-ATAACAATAATC
1 TTATTAAAATATATATAACAATAATC
86128284 ATCTACCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (26 bp):
TTATTAAAATATATATAACAATAATC
Found at i:86128451 original size:16 final size:16
Alignment explanation
Indices: 86128430--86128468 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
86128420 TAAATTACTG
*
86128430 ATTACAGCTCTATTCA
1 ATTACAGCCCTATTCA
*
86128446 ATTACAGCCCTATTCC
1 ATTACAGCCCTATTCA
86128462 ATTACAG
1 ATTACAG
86128469 TGAACCAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (16 bp):
ATTACAGCCCTATTCA
Found at i:86134210 original size:17 final size:17
Alignment explanation
Indices: 86134188--86134224 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
86134178 TGTATACTGT
86134188 ACTATAATGAAACTGAA
1 ACTATAATGAAACTGAA
86134205 ACTATAATGAAACTGAA
1 ACTATAATGAAACTGAA
86134222 ACT
1 ACT
86134225 GATAGAGACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.51, C:0.14, G:0.11, T:0.24
Consensus pattern (17 bp):
ACTATAATGAAACTGAA
Found at i:86136908 original size:27 final size:27
Alignment explanation
Indices: 86136877--86137054 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
86136867 TAAATTGTAC
86136877 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
86136904 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
86136930 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
86136958 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
86136986 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
86137013 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
86137040 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
86137055 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:86136991 original size:82 final size:81
Alignment explanation
Indices: 86136878--86137033 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
86136868 AAATTGTACA
* *
86136878 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
86136942 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
86136959 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
86137024 TGCGAGTTGA
65 TGCGAATTGA
86137034 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:86137045 original size:82 final size:81
Alignment explanation
Indices: 86136874--86137054 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
86136864 GATTAAATTG
* *
86136874 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
86136939 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
86136955 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
86137019 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
86137037 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
86137055 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:86145098 original size:27 final size:27
Alignment explanation
Indices: 86145067--86145244 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
86145057 TAAATTGTAC
86145067 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
86145094 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
86145120 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
86145148 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
86145176 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
86145203 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
86145230 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
86145245 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:86145181 original size:82 final size:81
Alignment explanation
Indices: 86145068--86145223 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
86145058 AAATTGTACA
* *
86145068 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
86145132 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
86145149 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
86145214 TGCGAGTTGA
65 TGCGAATTGA
86145224 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:86145235 original size:82 final size:81
Alignment explanation
Indices: 86145064--86145244 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
86145054 GATTAAATTG
* *
86145064 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
86145129 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
86145145 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
86145209 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
86145227 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
86145245 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:86147495 original size:258 final size:258
Alignment explanation
Indices: 86147038--86147810 Score: 1422
Period size: 258 Copynumber: 3.0 Consensus size: 258
86147028 TTTGAGTTCG
86147038 GTACAGAGGCCTAAGAAAAAGGCAAGGACTGATGGGTCGGTTAGAGCTGGGCACCCTGTTGCTCC
1 GTACAGAGGCCTAAGAAAAAGGCAAGGACTGATGGGTCGGTTAGAGCTGGGCACCCTGTTGCTCC
86147103 TACTGGATTGCAGCTGTGTGGAGATTATGGTAGACGCCATTAGGGCGAGTGTTGGAGGAGGACTG
66 TACTGGATTGCAGCTGTGTGGAGATTATGGTAGACGCCATTAGGGCGAGTGTTGGAGGAGGACTG
86147168 AGGCATGTTTGAGGTGTGGGTCTTTAGAGCACCATATTCGAGAGTATCCACTGAGGTTCAATCAG
131 AGGCATGTTTGAGGTGTGGGTCTTTAGAGCACCATATTCGAGAGTATCCACTGAGGTTCAATCAG
86147233 GTGTAAGCTCCGGGTTCTAGTACTACATAGCCACAGAGGGTAGTTCAGCAATCATCGAGGGGT
196 GTGTAAGCTCCGGGTTCTAGTACTACATAGCCACAGAGGGTAGTTCAGCAATCATCGAGGGGT
86147296 GTACAGAGGCCTAAGAAAAAGGCAAGGACTGATGGGTCGGTTAGAGCTGGGCACCCTGTTGCTCC
1 GTACAGAGGCCTAAGAAAAAGGCAAGGACTGATGGGTCGGTTAGAGCTGGGCACCCTGTTGCTCC
86147361 TACTGGATTGCAGCTGTGTGGAGATTATGGTAGACGCCATTAGGGCGAGTGTTGGAGGAGGACTG
66 TACTGGATTGCAGCTGTGTGGAGATTATGGTAGACGCCATTAGGGCGAGTGTTGGAGGAGGACTG
86147426 AGGCATGTTTGAGGTGTGGGTCTTTAGAGCACCATATTCGAGAGTATCCACTGAGGTTCAATCAG
131 AGGCATGTTTGAGGTGTGGGTCTTTAGAGCACCATATTCGAGAGTATCCACTGAGGTTCAATCAG
86147491 GTGTAAGCTCCGGGTTCTAGTACTACATAGCCACAGAGGGTAGTTCAGCAATCATCGAGGGGT
196 GTGTAAGCTCCGGGTTCTAGTACTACATAGCCACAGAGGGTAGTTCAGCAATCATCGAGGGGT
86147554 GTACAGAGGCCTAAGAAAAAGGCAAGGACTGATGGGTCGGTTAGAGCTGGGCACCCTGTTGCTCC
1 GTACAGAGGCCTAAGAAAAAGGCAAGGACTGATGGGTCGGTTAGAGCTGGGCACCCTGTTGCTCC
86147619 TACTGGATTGCAGCTGTGTGGAGATTATGGTAGACGCCATTAGGGCGAGTGTTGGAGGAGGACTG
66 TACTGGATTGCAGCTGTGTGGAGATTATGGTAGACGCCATTAGGGCGAGTGTTGGAGGAGGACTG
* * *
86147684 AGGCATGTTTGGGGTGTGGGTCTTTAGGGCACCATATTCGAGAGTATCCGCTGAAGG-TCAATCA
131 AGGCATGTTTGAGGTGTGGGTCTTTAGAGCACCATATTCGAGAGTATCCACTG-AGGTTCAATCA
* * ** * * * * *
86147748 GGTGCAAGCTCTGAATTCTGGTACTGCACAGCCACAAAGGGTAGTTCAGCAGTCATCGAGGGG
195 GGTGTAAGCTCCGGGTTCTAGTACTACATAGCCACAGAGGGTAGTTCAGCAATCATCGAGGGG
86147811 CCATGGTCAG
Statistics
Matches: 502, Mismatches: 12, Indels: 2
0.97 0.02 0.00
Matches are distributed among these distances:
258 499 0.99
259 3 0.01
ACGTcount: A:0.24, C:0.18, G:0.34, T:0.24
Consensus pattern (258 bp):
GTACAGAGGCCTAAGAAAAAGGCAAGGACTGATGGGTCGGTTAGAGCTGGGCACCCTGTTGCTCC
TACTGGATTGCAGCTGTGTGGAGATTATGGTAGACGCCATTAGGGCGAGTGTTGGAGGAGGACTG
AGGCATGTTTGAGGTGTGGGTCTTTAGAGCACCATATTCGAGAGTATCCACTGAGGTTCAATCAG
GTGTAAGCTCCGGGTTCTAGTACTACATAGCCACAGAGGGTAGTTCAGCAATCATCGAGGGGT
Found at i:86150515 original size:23 final size:23
Alignment explanation
Indices: 86150485--86150531 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
86150475 GGGTTCAAGG
86150485 TTGGACTTTAGTACTGCATTCCA
1 TTGGACTTTAGTACTGCATTCCA
*
86150508 TTGGACTTTAGTACTGCGTTCCA
1 TTGGACTTTAGTACTGCATTCCA
86150531 T
1 T
86150532 CCTCAGATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.19, C:0.21, G:0.19, T:0.40
Consensus pattern (23 bp):
TTGGACTTTAGTACTGCATTCCA
Found at i:86154831 original size:17 final size:20
Alignment explanation
Indices: 86154809--86154848 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
86154799 ATCAACCATG
86154809 CATATT-TAAA-C-TCACAA
1 CATATTATAAATCATCACAA
86154826 CATATTATAAATCATCACAA
1 CATATTATAAATCATCACAA
86154846 CAT
1 CAT
86154849 TCTTGAGTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 6 0.30
18 4 0.20
19 1 0.05
20 9 0.45
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.30
Consensus pattern (20 bp):
CATATTATAAATCATCACAA
Found at i:86155215 original size:48 final size:48
Alignment explanation
Indices: 86155124--86155258 Score: 143
Period size: 48 Copynumber: 2.8 Consensus size: 48
86155114 TAAGTTTTAT
* * * *
86155124 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCACACATAATGTCGCC
* * *
86155172 GATGCAATGTCCCAAACATGGTCTTACATTGGCACACGA-AATGTCGCT
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCACAC-ATAATGTCGCC
*
86155220 GATGCCATG-CTCTAAACAT-GTCTTACAC-GAGCACACATA
1 GATGCCATGTC-CCAAACATGGTCTTACACTG-GCACACATA
86155259 TCACCCAAAT
Statistics
Matches: 73, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
46 2 0.03
47 16 0.22
48 54 0.74
49 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (48 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGGCACACATAATGTCGCC
Found at i:86171879 original size:16 final size:16
Alignment explanation
Indices: 86171854--86171889 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
86171844 GGGATTATCA
86171854 AAGGAAAAAGTTCACC
1 AAGGAAAAAGTTCACC
*
86171870 AAGGAGAAAGTTCACC
1 AAGGAAAAAGTTCACC
86171886 AAGG
1 AAGG
86171890 GCAACTTAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.47, C:0.17, G:0.25, T:0.11
Consensus pattern (16 bp):
AAGGAAAAAGTTCACC
Found at i:86174876 original size:17 final size:17
Alignment explanation
Indices: 86174846--86174888 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
86174836 GTATTATGTA
86174846 AAAATATTTACAAATAT
1 AAAATATTTACAAATAT
*
86174863 CAAATAATTT-CAAATAT
1 AAAAT-ATTTACAAATAT
86174880 AAAAT-TTTA
1 AAAATATTTA
86174889 ATTAAAGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
15 3 0.14
17 15 0.68
18 4 0.18
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (17 bp):
AAAATATTTACAAATAT
Found at i:86182963 original size:14 final size:15
Alignment explanation
Indices: 86182944--86182976 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
86182934 TTTTTAAAAA
86182944 AATAT-ATAAAAATT
1 AATATAATAAAAATT
86182958 AATATAATAAAAATT
1 AATATAATAAAAATT
86182973 AATA
1 AATA
86182977 CAACCAAGCC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AATATAATAAAAATT
Found at i:86183811 original size:48 final size:47
Alignment explanation
Indices: 86183706--86183835 Score: 129
Period size: 48 Copynumber: 2.7 Consensus size: 47
86183696 TAATTTTAAT
* * *
86183706 TTTTCAATACTATTCGATATTTTTTAATTTATGCAAATTTAAATATAA
1 TTTT-AATACTATTTGATATTTTTTCATTTATGCAAATTTAAATAAAA
* * *
86183754 TTTGCAATACTATTTGATATTTTATTCATATATGC-AATTATAATTAAAA
1 TTT-TAATACTATTTGATATTTT-TTCATTTATGCAAATT-TAAATAAAA
*
86183803 TTTTAATACTACTTGA-ATTGTTTTTCATTTATG
1 TTTTAATACTATTTGATA-T-TTTTTCATTTATG
86183836 ATGTTTGCAT
Statistics
Matches: 68, Mismatches: 9, Indels: 10
0.78 0.10 0.11
Matches are distributed among these distances:
47 1 0.01
48 45 0.66
49 22 0.32
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (47 bp):
TTTTAATACTATTTGATATTTTTTCATTTATGCAAATTTAAATAAAA
Found at i:86184768 original size:9 final size:9
Alignment explanation
Indices: 86184754--86184812 Score: 93
Period size: 9 Copynumber: 6.6 Consensus size: 9
86184744 ATAAGTATAA
86184754 AATTAACCG
1 AATTAACCG
86184763 AATTAACCG
1 AATTAACCG
*
86184772 AATTACCCG
1 AATTAACCG
86184781 AATT-ACCTG
1 AATTAACC-G
86184790 AATTAACCG
1 AATTAACCG
86184799 AATTAACCG
1 AATTAACCG
86184808 AATTA
1 AATTA
86184813 TTTGTATAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
8 2 0.04
9 41 0.89
10 3 0.07
ACGTcount: A:0.42, C:0.22, G:0.10, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:86184849 original size:14 final size:14
Alignment explanation
Indices: 86184824--86184870 Score: 60
Period size: 14 Copynumber: 3.3 Consensus size: 14
86184814 TTGTATAAAA
86184824 TTATATTTTTTATATT
1 TTATA-TTTTTAT-TT
86184840 TT-TATTTTTATTT
1 TTATATTTTTATTT
*
86184853 TTAGATTTTTATTT
1 TTATATTTTTATTT
86184867 TTAT
1 TTAT
86184871 TTATTACATT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 4 0.14
14 20 0.71
15 2 0.07
16 2 0.07
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (14 bp):
TTATATTTTTATTT
Found at i:86184853 original size:5 final size:6
Alignment explanation
Indices: 86184831--86184872 Score: 57
Period size: 6 Copynumber: 6.5 Consensus size: 6
86184821 AAATTATATT
86184831 TTTTATA TTTTTA TTTTTA TTTTTAGA TTTTTA TTTTTA TTT
1 TTTT-TA TTTTTA TTTTTA TTTTT--A TTTTTA TTTTTA TTT
86184873 ATTACATTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
6 23 0.70
7 4 0.12
8 6 0.18
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:86184855 original size:20 final size:20
Alignment explanation
Indices: 86184830--86184872 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
86184820 AAAATTATAT
*
86184830 TTTTTATATTTTTATTTTTA
1 TTTTTAGATTTTTATTTTTA
86184850 TTTTTAGATTTTTATTTTTA
1 TTTTTAGATTTTTATTTTTA
86184870 TTT
1 TTT
86184873 ATTACATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (20 bp):
TTTTTAGATTTTTATTTTTA
Found at i:86186104 original size:18 final size:18
Alignment explanation
Indices: 86186081--86186122 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
86186071 GCTAGGTGCA
*
86186081 TATCCTAGCCCTTATATG
1 TATCCTAACCCTTATATG
86186099 TATCCTAACCCTTATATG
1 TATCCTAACCCTTATATG
*
86186117 TTTCCT
1 TATCCT
86186123 TTTTCTAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.21, C:0.29, G:0.07, T:0.43
Consensus pattern (18 bp):
TATCCTAACCCTTATATG
Found at i:86189070 original size:126 final size:126
Alignment explanation
Indices: 86188845--86189099 Score: 456
Period size: 126 Copynumber: 2.0 Consensus size: 126
86188835 TTATAGCCTC
*
86188845 ATTTTTCTACGAACTACTATAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGAAATTTTGTTG
1 ATTTTTCTACGAACTACTATAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGAAATTTTGCTG
*
86188910 ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTATCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
* *
86188971 ATTTTTCTATGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTATAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGAAATTTTGCTG
* *
86189036 ACCGTGTATCCTGCTTGAAGCGTTATCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTATCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
86189097 ATT
1 ATT
86189100 CTTGCAAAAA
Statistics
Matches: 123, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
126 123 1.00
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.35
Consensus pattern (126 bp):
ATTTTTCTACGAACTACTATAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGAAATTTTGCTG
ACAGTGCATCCTGCTTGAAGCGTTATCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
Found at i:86189680 original size:19 final size:19
Alignment explanation
Indices: 86189642--86189712 Score: 76
Period size: 19 Copynumber: 3.8 Consensus size: 19
86189632 ACGATTATGT
* *
86189642 ATCAAATAACTCTAAATTTA
1 ATCAATTAACCCT-AATTTA
86189662 ATCAATTAACCCTAATTTA
1 ATCAATTAACCCTAATTTA
*
86189681 ATCAA-T--CCATAATTTA
1 ATCAATTAACCCTAATTTA
*
86189697 ATCAATTAATCCTAAT
1 ATCAATTAACCCTAAT
86189713 ACCCTAAACT
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
16 14 0.33
17 1 0.02
18 1 0.02
19 16 0.37
20 11 0.26
ACGTcount: A:0.45, C:0.18, G:0.00, T:0.37
Consensus pattern (19 bp):
ATCAATTAACCCTAATTTA
Found at i:86189837 original size:15 final size:16
Alignment explanation
Indices: 86189811--86189846 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
86189801 ATTTTAAACA
86189811 CTAAAAACCCCTAACC
1 CTAAAAACCCCTAACC
86189827 CTAAAAA-CCCTAACC
1 CTAAAAACCCCTAACC
*
86189842 TTAAA
1 CTAAA
86189847 TCCTAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.63
16 7 0.37
ACGTcount: A:0.47, C:0.36, G:0.00, T:0.17
Consensus pattern (16 bp):
CTAAAAACCCCTAACC
Found at i:86191953 original size:45 final size:45
Alignment explanation
Indices: 86191904--86192118 Score: 340
Period size: 45 Copynumber: 4.8 Consensus size: 45
86191894 TTTCACCAGC
* *
86191904 ATTATAGCCTGCTAAGCTCGAAGGCCCGAACAGTATCTCACCGGT
1 ATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATCTCACCGGT
86191949 ATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATCTCACCGGT
1 ATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATCTCACCGGT
* * *
86191994 ATTATAGCCTGCTAGGTTCGAAGACCCGAATAGTATCTCATCGGT
1 ATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATCTCACCGGT
* * *
86192039 ATTATAGCCTGCTATGCTCAAAGGCCCGAATAGTATCTCACCGGC
1 ATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATCTCACCGGT
* *
86192084 ATTATAGCCTACTAGGCTCAAAGGCCCGAATAGTA
1 ATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTA
86192119 CTGTACGATA
Statistics
Matches: 157, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 157 1.00
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (45 bp):
ATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATCTCACCGGT
Found at i:86192973 original size:47 final size:48
Alignment explanation
Indices: 86192919--86193021 Score: 172
Period size: 47 Copynumber: 2.2 Consensus size: 48
86192909 TTAAAATTTT
*
86192919 CTTTAACTAAGTAACTTATCTGGAAATATTAAGAGCAAATTTAACAAG
1 CTTTAACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAG
* *
86192967 C-TTAACTAAGTAACTTGTCCGGAAATATTAAGAGCAAATTTAATAAG
1 CTTTAACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAG
86193014 CTTTAACT
1 CTTTAACT
86193022 TCAACTTATA
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
47 44 0.86
48 7 0.14
ACGTcount: A:0.42, C:0.14, G:0.13, T:0.32
Consensus pattern (48 bp):
CTTTAACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAG
Found at i:86199629 original size:18 final size:18
Alignment explanation
Indices: 86199606--86199644 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
86199596 TATAGCCTGC
86199606 TAGGCTCGAAGACCCGAA
1 TAGGCTCGAAGACCCGAA
86199624 TAGGCTCGAAGACCCGAA
1 TAGGCTCGAAGACCCGAA
86199642 TAG
1 TAG
86199645 TATCTCACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.33, C:0.26, G:0.28, T:0.13
Consensus pattern (18 bp):
TAGGCTCGAAGACCCGAA
Found at i:86199660 original size:63 final size:63
Alignment explanation
Indices: 86199561--86199689 Score: 215
Period size: 63 Copynumber: 2.0 Consensus size: 63
86199551 TATAGCCTGC
*
86199561 TAGGCTCGAAGGCCCGAACAGTATCTCACCGTTATTATAGCCTGCTAGGCTCGAAGACCCGAA
1 TAGGCTCGAAGACCCGAACAGTATCTCACCGTTATTATAGCCTGCTAGGCTCGAAGACCCGAA
* *
86199624 TAGGCTCGAAGACCCGAATAGTATCTCACCAG-TATTATAGCCTGCTAGGTTCGAAGACCCGAA
1 TAGGCTCGAAGACCCGAACAGTATCTCACC-GTTATTATAGCCTGCTAGGCTCGAAGACCCGAA
86199687 TAG
1 TAG
86199690 TATCTCATCG
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
63 61 0.98
64 1 0.02
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (63 bp):
TAGGCTCGAAGACCCGAACAGTATCTCACCGTTATTATAGCCTGCTAGGCTCGAAGACCCGAA
Found at i:86199693 original size:45 final size:45
Alignment explanation
Indices: 86199624--86199781 Score: 244
Period size: 45 Copynumber: 3.5 Consensus size: 45
86199614 AAGACCCGAA
* *
86199624 TAGGCTCGAAGACCCGAATAGTATCTCACCAGTATTATAGCCTGC
1 TAGGCTCAAAGACCCGAATAGTATCTCACCGGTATTATAGCCTGC
* * *
86199669 TAGGTTCGAAGACCCGAATAGTATCTCATCGGTATTATAGCCTGC
1 TAGGCTCAAAGACCCGAATAGTATCTCACCGGTATTATAGCCTGC
* *
86199714 TAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAGCCTGC
1 TAGGCTCAAAGACCCGAATAGTATCTCACCGGTATTATAGCCTGC
*
86199759 TAGGCTCAAAGACCTGAATAGTA
1 TAGGCTCAAAGACCCGAATAGTA
86199782 CTATACGATA
Statistics
Matches: 103, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 103 1.00
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.25
Consensus pattern (45 bp):
TAGGCTCAAAGACCCGAATAGTATCTCACCGGTATTATAGCCTGC
Found at i:86200638 original size:47 final size:48
Alignment explanation
Indices: 86200584--86200686 Score: 172
Period size: 47 Copynumber: 2.2 Consensus size: 48
86200574 TTAAAATTTT
* *
86200584 CTTTAACTAAGTAACTTATCCGGAAATATTAAGGGCAAATTTAACAAG
1 CTTTAACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAA
*
86200632 C-TTAACTAAGTAACTTGTCCGGAAATATTAAGAGCAAATTTAACAAA
1 CTTTAACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAA
86200679 CTTTAACT
1 CTTTAACT
86200687 TCAACTTATA
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
47 44 0.86
48 7 0.14
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.30
Consensus pattern (48 bp):
CTTTAACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAA
Found at i:86203351 original size:153 final size:153
Alignment explanation
Indices: 86203073--86203371 Score: 436
Period size: 153 Copynumber: 2.0 Consensus size: 153
86203063 ACACGCCCGT
* * * * *
86203073 GTGGCTAGGTCGTGTGGGCATTCGAAATGAGATCACATGCCCGTGTCTCAACCTATGTCCGACCC
1 GTGGCTAGGCCATGTGGGCATTCGAAATGAGATCACATGCCCATATCTCAACCCATGTCCGACCC
* * * *
86203138 TGTTTAACTCACTAACTTGGGTCACACGGCCAGCCCACACGCCCATGTGCCAGGTCGTGTGCCCT
66 CGTGTAACTCACTAACTTGGGTCACACGGCCAGACCACACGCCCATGTGCCAGGCCGTGTGCCCT
***
86203203 TTGAAATGGCCTCACATGCCTGC
131 CCAAAATGGCCTCACATGCCTGC
* * * *
86203226 GTGGCTAGGCCATGTGGGCATTTGAAATGAGATCACATGGCCATATCTTAACCCGTGTCCGACCC
1 GTGGCTAGGCCATGTGGGCATTCGAAATGAGATCACATGCCCATATCTCAACCCATGTCCGACCC
**
86203291 CGTGTAACTCACTAACTTGGGTCACACGGCCAGACCACACGCCTGTGTGCCAGGCCGTGTGCCCT
66 CGTGTAACTCACTAACTTGGGTCACACGGCCAGACCACACGCCCATGTGCCAGGCCGTGTGCCCT
86203356 CCAAAATGGCCTCACA
131 CCAAAATGGCCTCACA
86203372 CACCCGTGTG
Statistics
Matches: 128, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
153 128 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (153 bp):
GTGGCTAGGCCATGTGGGCATTCGAAATGAGATCACATGCCCATATCTCAACCCATGTCCGACCC
CGTGTAACTCACTAACTTGGGTCACACGGCCAGACCACACGCCCATGTGCCAGGCCGTGTGCCCT
CCAAAATGGCCTCACATGCCTGC
Found at i:86207695 original size:25 final size:25
Alignment explanation
Indices: 86207667--86207744 Score: 88
Period size: 25 Copynumber: 3.1 Consensus size: 25
86207657 CTCCTCCGAA
*
86207667 CTGAATATCGGTAAGCTCATATGAG
1 CTGAATATCGGTAAGCTCATACGAG
* *
86207692 CTGAGTATTGGTAAGCTC-TCACGAG
1 CTGAATATCGGTAAGCTCAT-ACGAG
*
86207717 CAGCAA-ATCGGTAAGCTCATACGAG
1 CTG-AATATCGGTAAGCTCATACGAG
86207742 CTG
1 CTG
86207745 TGGTGAGTCC
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
24 1 0.02
25 40 0.93
26 2 0.05
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (25 bp):
CTGAATATCGGTAAGCTCATACGAG
Found at i:86209344 original size:26 final size:27
Alignment explanation
Indices: 86209301--86209353 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
86209291 ATCCTTTAAC
* * *
86209301 CAAACCCTAAATTTGAATCTTGAACCT
1 CAAACCCTAAAATCGAATATTGAACCT
86209328 CAAACCC-AAAATCGAATATTGAACCT
1 CAAACCCTAAAATCGAATATTGAACCT
86209354 TAAATCATGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 16 0.70
27 7 0.30
ACGTcount: A:0.42, C:0.26, G:0.08, T:0.25
Consensus pattern (27 bp):
CAAACCCTAAAATCGAATATTGAACCT
Found at i:86212782 original size:104 final size:105
Alignment explanation
Indices: 86212538--86212783 Score: 275
Period size: 104 Copynumber: 2.4 Consensus size: 105
86212528 AATTTGCCCA
* *
86212538 TGTGATTCTAAATCATAAACAATGAGTTAC-ACGACTGAGACACACACCTATGTCCTTGCCTGTG
1 TGTGATTCTAAATCATAAACAATGAGTTACAAGGCCTGAGACACACACCTATGTCCTTGCCTGTG
* * *
86212602 TGGCTCACACGGCCTAGTACATGCCAATGTCATCTACCCG
66 TGGCTCACACAGCCTAGCACATGCCAATGTCATCTAACCG
* * * * * *
86212642 TATGGTTCTAAGTCATAAACAGTGAGTTACACGGCCT-AGACACACACTTATGTCCTTG-CTCGT
1 TGTGATTCTAAATCATAAACAATGAGTTACAAGGCCTGAGACACACACCTATGTCCTTGCCT-GT
* * ** * **
86212705 GTGGCTCA-ACAGCTTGGGCACATGCTTATGTCATTTAATTG
65 GTGGCTCACACAGCCT-AGCACATGCCAATGTCATCTAACCG
*
86212746 TGTGATTCTAAATCATAAAAAATGAGTTACAAGGCCTG
1 TGTGATTCTAAATCATAAACAATGAGTTACAAGGCCTG
86212784 TACACATGCC
Statistics
Matches: 114, Mismatches: 24, Indels: 7
0.79 0.17 0.05
Matches are distributed among these distances:
103 7 0.06
104 104 0.91
105 3 0.03
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (105 bp):
TGTGATTCTAAATCATAAACAATGAGTTACAAGGCCTGAGACACACACCTATGTCCTTGCCTGTG
TGGCTCACACAGCCTAGCACATGCCAATGTCATCTAACCG
Found at i:86220013 original size:225 final size:225
Alignment explanation
Indices: 86219622--86220074 Score: 834
Period size: 225 Copynumber: 2.0 Consensus size: 225
86219612 AAATTTAGAT
*
86219622 TATAAATACATTGTGAAGGTCAGTGCTCGTGTTGGGCAACATTCATGGCCTCAAAAATAAGATTT
1 TATAAATACATTGTGAAGGTCAGTGCTCGTGTTGGGCAACATTCACGGCCTCAAAAATAAGATTT
86219687 AGATCCTATTCAGATACCACACATCCTGAAAACATGCCCATGTCATCTTCCTACGTGGTTATAAA
66 AGATCCTATTCAGATACCACACATCCTGAAAACATGCCCATGTCATCTTCCTACGTGGTTATAAA
86219752 TTATAAACAGTGAGTTACACTGTAACAACCCAGTTTTGGCTAAATCAGAACAGTGGTTTCAGAAC
131 TTATAAACAGTGAGTTACACTGTAACAACCCAGTTTTGGCTAAATCAGAACAGTGGTTTCAGAAC
*
86219817 CATAAATTAAATGTCGAAAAATTATTTTAA
196 CATAAATTAAATGTCAAAAAATTATTTTAA
86219847 TATAAATACATTGTGAAGGTCAGTGCTCGTGTTGGGCAACATTCACGGCCTCAAAAATAAGATTT
1 TATAAATACATTGTGAAGGTCAGTGCTCGTGTTGGGCAACATTCACGGCCTCAAAAATAAGATTT
* *
86219912 AGATCCTATTCAGATACCACACTTCCTGGAAACATGCCCATGTCATCTTCCTACGTGGTTATAAA
66 AGATCCTATTCAGATACCACACATCCTGAAAACATGCCCATGTCATCTTCCTACGTGGTTATAAA
* *
86219977 TTATAAACAGTGAGTTACACTGTAATAGCCCAGTTTTGGCTAAATCAGAACAGTGGTTTCAGAAC
131 TTATAAACAGTGAGTTACACTGTAACAACCCAGTTTTGGCTAAATCAGAACAGTGGTTTCAGAAC
**
86220042 CATAAATTCGATGTCAAAAAATTATTTTAA
196 CATAAATTAAATGTCAAAAAATTATTTTAA
86220072 TAT
1 TAT
86220075 TATTTTATGT
Statistics
Matches: 220, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
225 220 1.00
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (225 bp):
TATAAATACATTGTGAAGGTCAGTGCTCGTGTTGGGCAACATTCACGGCCTCAAAAATAAGATTT
AGATCCTATTCAGATACCACACATCCTGAAAACATGCCCATGTCATCTTCCTACGTGGTTATAAA
TTATAAACAGTGAGTTACACTGTAACAACCCAGTTTTGGCTAAATCAGAACAGTGGTTTCAGAAC
CATAAATTAAATGTCAAAAAATTATTTTAA
Found at i:86223589 original size:46 final size:46
Alignment explanation
Indices: 86223537--86223629 Score: 168
Period size: 46 Copynumber: 2.0 Consensus size: 46
86223527 GTTGAGTAAG
*
86223537 TATGCCAGGGAATATTTTTCTACCGAAGAGATTATGTGTAAGCGGT
1 TATGCCAGGGAATAGTTTTCTACCGAAGAGATTATGTGTAAGCGGT
*
86223583 TATGCCAGGGAATAGTTTTCTACTGAAGAGATTATGTGTAAGCGGT
1 TATGCCAGGGAATAGTTTTCTACCGAAGAGATTATGTGTAAGCGGT
86223629 T
1 T
86223630 CGTCGACGGG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.33
Consensus pattern (46 bp):
TATGCCAGGGAATAGTTTTCTACCGAAGAGATTATGTGTAAGCGGT
Found at i:86230493 original size:39 final size:39
Alignment explanation
Indices: 86230438--86230607 Score: 243
Period size: 39 Copynumber: 4.4 Consensus size: 39
86230428 ATAATGGAGA
86230438 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* *
86230477 GTTATATCCGGGCTAAGTCCCGAAGTCATTCGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* * *
86230516 ACTATATCCGAGTTAAGTCCCGAAGGCATTCGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* * *
86230555 GTTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGT
1 ATTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGT
*
86230594 ATTATATCCAGGCT
1 ATTATATCCGGGCT
86230608 TAAAGTCTCG
Statistics
Matches: 115, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
39 103 0.90
40 12 0.10
ACGTcount: A:0.20, C:0.23, G:0.27, T:0.30
Consensus pattern (39 bp):
ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
Found at i:86240841 original size:28 final size:28
Alignment explanation
Indices: 86240759--86240880 Score: 149
Period size: 27 Copynumber: 4.4 Consensus size: 28
86240749 GAGATTGGCG
* * * *
86240759 CTAAGTGTGCGGGTTTAAATTGTGCAGCA
1 CTAAGTGTGCGAGTTT-GATTATGTAGCA
* *
86240788 CTAAGTGTGCGA-ATTGACTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
86240815 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
86240843 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
86240870 CTGAGTGTGCG
1 CTAAGTGTGCG
86240881 GACTTAATAT
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
27 43 0.52
28 28 0.34
29 11 0.13
ACGTcount: A:0.25, C:0.13, G:0.30, T:0.32
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATGTAGCA
Found at i:86240849 original size:55 final size:56
Alignment explanation
Indices: 86240759--86240880 Score: 165
Period size: 55 Copynumber: 2.2 Consensus size: 56
86240749 GAGATTGGCG
* * *
86240759 CTAAGTGTGCGGGTTTAAATTGTGCAGCACTAAGTGTGCGAATTGACTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATTATGCAGCACTAAGTGTGCGAATTGACTATATAGCA
* * * *
86240815 CTAAGTGTGCGAGTTT-GATTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATGCAGCACTAAGTGTGCGAATTGACTATATAGCA
*
86240870 CTGAGTGTGCG
1 CTAAGTGTGCG
86240881 GACTTAATAT
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
55 43 0.74
56 15 0.26
ACGTcount: A:0.25, C:0.13, G:0.30, T:0.32
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTAAATTATGCAGCACTAAGTGTGCGAATTGACTATATAGCA
Found at i:86240891 original size:27 final size:27
Alignment explanation
Indices: 86240784--86240893 Score: 114
Period size: 27 Copynumber: 4.0 Consensus size: 27
86240774 TAAATTGTGC
* * *
86240784 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGACTTGAATATAT
* * *
86240811 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
86240839 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
86240866 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
86240893 A
1 A
86240894 TTCTTGAATC
Statistics
Matches: 74, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
27 45 0.61
28 29 0.39
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.32
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:86244170 original size:15 final size:15
Alignment explanation
Indices: 86244150--86244180 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
86244140 AGTGAGCTCA
86244150 ACGAAAATAAGATTC
1 ACGAAAATAAGATTC
86244165 ACGAAAATAAGATTC
1 ACGAAAATAAGATTC
86244180 A
1 A
86244181 GATCGACAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.13, G:0.13, T:0.19
Consensus pattern (15 bp):
ACGAAAATAAGATTC
Found at i:86253162 original size:49 final size:49
Alignment explanation
Indices: 86253109--86253206 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
86253099 ATAAATGTAT
86253109 GTTAAAATACTTTAATATTGCATAAATTGTTAAAACAGGATTATGGATA
1 GTTAAAATACTTTAATATTGCATAAATTGTTAAAACAGGATTATGGATA
*
86253158 GTTAAAATGCTTTAATATTGCATAAATTGTTAAAACAGGATTATGGATA
1 GTTAAAATACTTTAATATTGCATAAATTGTTAAAACAGGATTATGGATA
86253207 ATGTATGAGG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.42, C:0.06, G:0.15, T:0.37
Consensus pattern (49 bp):
GTTAAAATACTTTAATATTGCATAAATTGTTAAAACAGGATTATGGATA
Found at i:86258474 original size:20 final size:20
Alignment explanation
Indices: 86258436--86258475 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
86258426 AAAAAGCGAA
86258436 AGAAGAGGAAAAAGAAAAAG
1 AGAAGAGGAAAAAGAAAAAG
86258456 AGAAG-GGAAAGAAGCAAAAA
1 AGAAGAGGAAA-AAG-AAAAA
86258476 TGTAAAGGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.28
20 8 0.44
21 5 0.28
ACGTcount: A:0.68, C:0.03, G:0.30, T:0.00
Consensus pattern (20 bp):
AGAAGAGGAAAAAGAAAAAG
Found at i:86265075 original size:151 final size:151
Alignment explanation
Indices: 86264878--86265161 Score: 417
Period size: 151 Copynumber: 1.9 Consensus size: 151
86264868 TTCTCAAAAA
* * * * * *
86264878 AATAATATTTTATTATTTTTAAATTTTAATAATGTGACACTTTTTTATTGGCGTC-TAAAATTAT
1 AATAATATTTTATTATTTTTAAAATTTAATAATGTGACACTATTTTATTAGCGCCAAAAAAATAT
* * *
86264942 ATTTTTTAGATCATCTTAATATAATTTATTTTTTTAAAATGAAGGATGGGGTTTTATATTGAAAT
66 ATTTTTTAGATAATCTTAATATAATTTATTTTTTTAAAACGAAGGAT-GGGTTTTATACTGAAAT
86265007 TAATAGATATAGATGAGTGTAT
130 TAATAGATATAGATGAGTGTAT
* * ** *
86265029 AATAATATTTTGTTATTTTTAAAATTTAATGATGTGGTACTATTTTATTAGTGCCAAAAAAATAT
1 AATAATATTTTATTATTTTTAAAATTTAATAATGTGACACTATTTTATTAGCGCCAAAAAAATAT
*
86265094 ATTTTTTAGATAATCTTAATATAATTTATTTTTTTTAAACGAAGGATGGGTTTTATACTGAAATT
66 ATTTTTTAGATAATCTTAATATAATTTATTTTTTTAAAACGAAGGATGGGTTTTATACTGAAATT
86265159 AAT
131 AAT
86265162 GGAATAATTT
Statistics
Matches: 117, Mismatches: 15, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
151 66 0.56
152 51 0.44
ACGTcount: A:0.36, C:0.04, G:0.12, T:0.48
Consensus pattern (151 bp):
AATAATATTTTATTATTTTTAAAATTTAATAATGTGACACTATTTTATTAGCGCCAAAAAAATAT
ATTTTTTAGATAATCTTAATATAATTTATTTTTTTAAAACGAAGGATGGGTTTTATACTGAAATT
AATAGATATAGATGAGTGTAT
Found at i:86271032 original size:23 final size:24
Alignment explanation
Indices: 86270981--86271036 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 24
86270971 TCAGCTCGTA
* * *
86270981 AGAGCTTACTGTTTTCAACTCGTT
1 AGAGCTTACTGATTTCAACTCATC
*
86271005 GGAGCTTACTGATTT-AACTCATC
1 AGAGCTTACTGATTTCAACTCATC
86271028 AGAGCTTAC
1 AGAGCTTAC
86271037 CGTTTCAGCT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 14 0.52
24 13 0.48
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (24 bp):
AGAGCTTACTGATTTCAACTCATC
Found at i:86277804 original size:22 final size:22
Alignment explanation
Indices: 86277743--86277796 Score: 99
Period size: 22 Copynumber: 2.5 Consensus size: 22
86277733 AGCTGGAAAT
86277743 AGGAAGCTCTATTGAGCTGAAC
1 AGGAAGCTCTATTGAGCTGAAC
*
86277765 GGGAAGCTCTATTGAGCTGAAC
1 AGGAAGCTCTATTGAGCTGAAC
86277787 AGGAAGCTCT
1 AGGAAGCTCT
86277797 TACGAGCTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.30, C:0.19, G:0.30, T:0.22
Consensus pattern (22 bp):
AGGAAGCTCTATTGAGCTGAAC
Found at i:86285337 original size:25 final size:25
Alignment explanation
Indices: 86285288--86285339 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
86285278 AAAATTGTTT
*
86285288 TAAGAATTTTATTTCTAAAAGAAAA
1 TAAGAATTTTATTTCGAAAAGAAAA
*
86285313 TAAGAATTTTATTT-GAAATGTAAAA
1 TAAGAATTTTATTTCGAAAAG-AAAA
86285338 TA
1 TA
86285340 TAATGGAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 4 0.17
25 20 0.83
ACGTcount: A:0.50, C:0.02, G:0.10, T:0.38
Consensus pattern (25 bp):
TAAGAATTTTATTTCGAAAAGAAAA
Found at i:86291491 original size:23 final size:23
Alignment explanation
Indices: 86291461--86291523 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
86291451 CAACTCGTAT
86291461 GAGCTTACCGATTCAGCCCATAA
1 GAGCTTACCGATTCAGCCCATAA
* * **
86291484 GAGCTTACCGTTTCAGCTCATTG
1 GAGCTTACCGATTCAGCCCATAA
* *
86291507 GAGATTATCGATTCAGC
1 GAGCTTACCGATTCAGC
86291524 TTGATAGAGC
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (23 bp):
GAGCTTACCGATTCAGCCCATAA
Found at i:86291536 original size:46 final size:47
Alignment explanation
Indices: 86291483--86291597 Score: 135
Period size: 46 Copynumber: 2.4 Consensus size: 47
86291473 TCAGCCCATA
* * * *
86291483 AGAGCTTACCGTTTCAGCTCATTGGAGATTATCG-ATTCAGCTTGAT
1 AGAGCTTACTGTTTCAGCTCAATAGAGATTATCGTATTCAGCTTAAT
* * *
86291529 AGAGCTTACTGTTT-AGCTCAATAGAGCTTATCGTTTTCAGGTTAAT
1 AGAGCTTACTGTTTCAGCTCAATAGAGATTATCGTATTCAGCTTAAT
86291575 AGAGCTTACTGTTTATCAGCTCA
1 AGAGCTTACTG-TT-TCAGCTCA
86291598 GGAGGAGCTT
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
45 16 0.28
46 33 0.57
47 2 0.03
48 1 0.02
49 6 0.10
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (47 bp):
AGAGCTTACTGTTTCAGCTCAATAGAGATTATCGTATTCAGCTTAAT
Found at i:86291588 original size:24 final size:24
Alignment explanation
Indices: 86291518--86291595 Score: 90
Period size: 24 Copynumber: 3.3 Consensus size: 24
86291508 AGATTATCGA
*
86291518 TTCAGCTTGATAGAGCTTACTG-T
1 TTCAGCTTAATAGAGCTTACTGTT
*
86291541 TT-AGCTCAATAGAGCTTA-TCGTT
1 TTCAGCTTAATAGAGCTTACT-GTT
*
86291564 TTCAGGTTAATAGAGCTTACTGTT
1 TTCAGCTTAATAGAGCTTACTGTT
86291588 TATCAGCT
1 T-TCAGCT
86291596 CAGGAGGAGC
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
21 1 0.02
22 15 0.33
23 5 0.11
24 18 0.40
25 6 0.13
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.40
Consensus pattern (24 bp):
TTCAGCTTAATAGAGCTTACTGTT
Found at i:86291794 original size:20 final size:20
Alignment explanation
Indices: 86291771--86291832 Score: 79
Period size: 20 Copynumber: 3.1 Consensus size: 20
86291761 GTTATTATTG
86291771 ATGAATTACTGGTTATACGA
1 ATGAATTACTGGTTATACGA
* * *
86291791 ATGAACTACTAGTTATATGA
1 ATGAATTACTGGTTATACGA
* *
86291811 ATGAATTACAGTTTATACGA
1 ATGAATTACTGGTTATACGA
86291831 AT
1 AT
86291833 AGAAATGAAT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (20 bp):
ATGAATTACTGGTTATACGA
Found at i:86295082 original size:24 final size:24
Alignment explanation
Indices: 86295044--86295091 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
86295034 TATTAAACAT
*
86295044 ATAATATAATATTTATATAATAAA
1 ATAATATAATATTTAAATAATAAA
86295068 ATAA-ATAATATTTTAAATAATAAA
1 ATAATATAATA-TTTAAATAATAAA
86295092 TCTTTCACCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 6 0.27
24 16 0.73
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (24 bp):
ATAATATAATATTTAAATAATAAA
Found at i:86297195 original size:18 final size:20
Alignment explanation
Indices: 86297157--86297198 Score: 61
Period size: 18 Copynumber: 2.2 Consensus size: 20
86297147 TTGCAAAAGG
*
86297157 TGTAAAATATGTGGTAAAAA
1 TGTAAAATATATGGTAAAAA
86297177 TGTAAAATA-ATGG-AAAAA
1 TGTAAAATATATGGTAAAAA
86297195 TGTA
1 TGTA
86297199 GGCTGCCATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.43
19 3 0.14
20 9 0.43
ACGTcount: A:0.52, C:0.00, G:0.19, T:0.29
Consensus pattern (20 bp):
TGTAAAATATATGGTAAAAA
Found at i:86297815 original size:90 final size:90
Alignment explanation
Indices: 86297662--86297835 Score: 348
Period size: 90 Copynumber: 1.9 Consensus size: 90
86297652 TGGCTTACAT
86297662 GGCTTGAGATCCTGCATGCGTTGCAGAAAAGGATTTAGCCCGGACGGGTAATCCGTTGATCTCAA
1 GGCTTGAGATCCTGCATGCGTTGCAGAAAAGGATTTAGCCCGGACGGGTAATCCGTTGATCTCAA
86297727 ATATAGGAAGGATTTAGCCTAGACA
66 ATATAGGAAGGATTTAGCCTAGACA
86297752 GGCTTGAGATCCTGCATGCGTTGCAGAAAAGGATTTAGCCCGGACGGGTAATCCGTTGATCTCAA
1 GGCTTGAGATCCTGCATGCGTTGCAGAAAAGGATTTAGCCCGGACGGGTAATCCGTTGATCTCAA
86297817 ATATAGGAAGGATTTAGCC
66 ATATAGGAAGGATTTAGCC
86297836 CGGACGGGTA
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
90 84 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (90 bp):
GGCTTGAGATCCTGCATGCGTTGCAGAAAAGGATTTAGCCCGGACGGGTAATCCGTTGATCTCAA
ATATAGGAAGGATTTAGCCTAGACA
Found at i:86297835 original size:44 final size:43
Alignment explanation
Indices: 86297690--86297853 Score: 147
Period size: 44 Copynumber: 3.7 Consensus size: 43
86297680 CGTTGCAGAA
86297690 AAGGATTTAGCCCGGACGGGTAATCCGTTGATCTCAAATATAGG
1 AAGGATTTAGCCCGGACGGGTAATCC-TTGATCTCAAATATAGG
** * *** *
86297734 AAGGATTTAGCCTAGACAGGCTTGAGATCC-TGCATGCGTTGCAGA-A--
1 AAGGATTTAGCCCGGAC-GG-GT-A-ATCCTTG-AT-C-TCAAATATAGG
86297780 AAGGATTTAGCCCGGACGGGTAATCCGTTGATCTCAAATATAGG
1 AAGGATTTAGCCCGGACGGGTAATCC-TTGATCTCAAATATAGG
*
86297824 AAGGATTTAGCCCGGACGGGTATTCCTTGA
1 AAGGATTTAGCCCGGACGGGTAATCCTTGA
86297854 GTGATCGAGC
Statistics
Matches: 93, Mismatches: 15, Indels: 25
0.70 0.11 0.19
Matches are distributed among these distances:
41 3 0.03
42 6 0.06
43 7 0.08
44 43 0.46
45 4 0.04
46 18 0.19
47 3 0.03
48 6 0.06
49 3 0.03
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (43 bp):
AAGGATTTAGCCCGGACGGGTAATCCTTGATCTCAAATATAGG
Found at i:86309269 original size:35 final size:35
Alignment explanation
Indices: 86309242--86309369 Score: 157
Period size: 35 Copynumber: 3.5 Consensus size: 35
86309232 CATGGAAAAG
*
86309242 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
* *
86309277 TGTAAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
86309312 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGC
**
86309352 TAAGAAATGTAGGTATGG
1 TGTGAAATGTAGGTATGG
86309370 CATTTCCCTT
Statistics
Matches: 80, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
35 49 0.61
38 3 0.04
40 28 0.35
ACGTcount: A:0.32, C:0.09, G:0.25, T:0.34
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
Found at i:86309332 original size:40 final size:40
Alignment explanation
Indices: 86309253--86309369 Score: 122
Period size: 40 Copynumber: 3.0 Consensus size: 40
86309243 GTGAAATGTA
* *
86309253 GGTATGGTATCATCCATACTGAGTTGTAAAATGTAGGTAT
1 GGTATGGTATAATCCATACTGAGTTGTGAAATGTAGGTAT
*
86309293 GGTA---T-T-ATCCATACTGAGCTGTGAAATGTAGGTAT
1 GGTATGGTATAATCCATACTGAGTTGTGAAATGTAGGTAT
**
86309328 GGTAT--TATCAAATCCATACTGAGTTAAGAAATGTAGGTAT
1 GGTATGGTAT--AATCCATACTGAGTTGTGAAATGTAGGTAT
86309368 GG
1 GG
86309370 CATTTCCCTT
Statistics
Matches: 67, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
35 31 0.46
36 2 0.03
37 2 0.03
40 32 0.48
ACGTcount: A:0.32, C:0.10, G:0.25, T:0.33
Consensus pattern (40 bp):
GGTATGGTATAATCCATACTGAGTTGTGAAATGTAGGTAT
Found at i:86309362 original size:75 final size:75
Alignment explanation
Indices: 86309242--86309412 Score: 196
Period size: 75 Copynumber: 2.4 Consensus size: 75
86309232 CATGGAAAAG
* *
86309242 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTAAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATT-TC
*
86309301 CCATACTGAGC
65 CCATACCGAGC
86309312 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTT-AAGAAATGTAGGTATGGCATTTC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAA-AAATGTAGGTATGGCATTTC
* *
86309376 CCTTACCGAGT
65 CCATACCGAGC
** *
86309387 TGAAAAAAGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
86309413 TGAGGAAAAC
Statistics
Matches: 86, Mismatches: 8, Indels: 10
0.83 0.08 0.10
Matches are distributed among these distances:
70 18 0.21
73 4 0.05
74 6 0.07
75 58 0.67
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:86314661 original size:47 final size:47
Alignment explanation
Indices: 86314597--86314707 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
86314587 GACATTGAGT
*
86314597 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTGTTC
* * *
86314644 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTGTTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
86314691 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
86314708 CTTATCCCGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
47 52 0.93
48 4 0.07
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
Found at i:86316554 original size:17 final size:17
Alignment explanation
Indices: 86316532--86316565 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
86316522 TAATGGAAAC
86316532 TAATCTTAGAAGATTTG
1 TAATCTTAGAAGATTTG
*
86316549 TAATCTTATAAGATTTG
1 TAATCTTAGAAGATTTG
86316566 ATTTTGTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.06, G:0.15, T:0.44
Consensus pattern (17 bp):
TAATCTTAGAAGATTTG
Found at i:86322100 original size:20 final size:19
Alignment explanation
Indices: 86322060--86322112 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 19
86322050 CATTAAAGAC
*
86322060 AAATATTAATAAATTATTTA
1 AAATATTAA-AAATTAATTA
*
86322080 AACATATTAAATATTAATTA
1 AA-ATATTAAAAATTAATTA
86322100 AAATTATTAAAAA
1 AAA-TATTAAAAA
86322113 AATTCTCTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 1 0.04
20 20 0.71
21 7 0.25
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (19 bp):
AAATATTAAAAATTAATTA
Found at i:86326812 original size:112 final size:114
Alignment explanation
Indices: 86326653--86326878 Score: 377
Period size: 112 Copynumber: 2.0 Consensus size: 114
86326643 CATCAGTTAA
*
86326653 ATGGTATGCTATGTATCCGTAGAATCTTAGCTGTAGCTTGATGGTAGTTAAAGTACTAATTAAC-
1 ATGGTATGCTATGTATCCGTAGAATCTTAGCTGTAGCTTGATAGTAGTTAAAGTACTAATTAACG
86326717 G-GCAATTTACGAGTGATAAATATAGTCAAGAACATAGATCAAGCTTTAG
66 GTGCAATTTACGAGTGAT-AATATAGTCAAGAACATAGATCAAGCTTTAG
86326766 ATGGTATGCTATGTAT-CGTAGAATCTTAGCTGTAGCTTGATAGTAGTTAAAGTACTAATTAACG
1 ATGGTATGCTATGTATCCGTAGAATCTTAGCTGTAGCTTGATAGTAGTTAAAGTACTAATTAAC-
86326830 GAAGGTGCAATTTACGAGTGATAATATAGTCAAGAACATAGATCAAGCT
65 ---GGTGCAATTTACGAGTGATAATATAGTCAAGAACATAGATCAAGCT
86326879 CCCTCGCTCA
Statistics
Matches: 106, Mismatches: 1, Indels: 8
0.92 0.01 0.07
Matches are distributed among these distances:
112 46 0.43
113 16 0.15
117 28 0.26
118 16 0.15
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.31
Consensus pattern (114 bp):
ATGGTATGCTATGTATCCGTAGAATCTTAGCTGTAGCTTGATAGTAGTTAAAGTACTAATTAACG
GTGCAATTTACGAGTGATAATATAGTCAAGAACATAGATCAAGCTTTAG
Found at i:86328946 original size:15 final size:15
Alignment explanation
Indices: 86328904--86328948 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
86328894 AAGAAAATTG
* *
86328904 GAAAGATGGAAAATT
1 GAAAGATAGAAAATA
*
86328919 GAAAGGGTAGAAAATA
1 GAAA-GATAGAAAATA
86328935 GAAAGATAGAAAAT
1 GAAAGATAGAAAAT
86328949 GTAATTTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
15 13 0.52
16 12 0.48
ACGTcount: A:0.58, C:0.00, G:0.27, T:0.16
Consensus pattern (15 bp):
GAAAGATAGAAAATA
Found at i:86340056 original size:58 final size:59
Alignment explanation
Indices: 86339983--86340104 Score: 201
Period size: 58 Copynumber: 2.1 Consensus size: 59
86339973 AATTTTTCCA
* *
86339983 ACACATTAATAAATTACACTAGACTTTAAAATTGTTGTGGTTTA-GTTTCCTTTAGTAG
1 ACACATTAATAAATTACACTAAACTTTAAAAATGTTGTGGTTTAGGTTTCCTTTAGTAG
*
86340041 ACACATTAATCAATTACACTAAACTTTAAAAATGTTGTGGTTTAGGTTTCCTTTAGTAG
1 ACACATTAATAAATTACACTAAACTTTAAAAATGTTGTGGTTTAGGTTTCCTTTAGTAG
*
86340100 CCACA
1 ACACA
86340105 AGACTAATGG
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 41 0.69
59 18 0.31
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.39
Consensus pattern (59 bp):
ACACATTAATAAATTACACTAAACTTTAAAAATGTTGTGGTTTAGGTTTCCTTTAGTAG
Found at i:86346688 original size:26 final size:25
Alignment explanation
Indices: 86346648--86346709 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 25
86346638 ACATATTTTC
*
86346648 TCAAAATTTTTCCAAAGGC-AAAATCG
1 TCAAAATTTTACC-AA-GCAAAAATCG
*
86346674 TTAAAATTTTACCAAGCATAAAATCG
1 TCAAAATTTTACCAAGCA-AAAATCG
86346700 TCAAAATTTT
1 TCAAAATTTT
86346710 GTTAGAGGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
24 2 0.06
25 2 0.06
26 27 0.87
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (25 bp):
TCAAAATTTTACCAAGCAAAAATCG
Found at i:86358420 original size:17 final size:17
Alignment explanation
Indices: 86358371--86358433 Score: 53
Period size: 19 Copynumber: 3.8 Consensus size: 17
86358361 ATATATCCAA
*
86358371 AAAAATATTAAAAATCAAT
1 AAAAATATTATAAA--AAT
*
86358390 AAAAATATTTTAAAAAT
1 AAAAATATTATAAAAAT
86358407 AAAACA-ATTAT--AAAT
1 AAAA-ATATTATAAAAAT
86358422 AAAAATA-TATAA
1 AAAAATATTATAA
86358434 TTTAAAAAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 11
0.73 0.06 0.22
Matches are distributed among these distances:
14 4 0.11
15 9 0.24
17 11 0.30
18 1 0.03
19 12 0.32
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (17 bp):
AAAAATATTATAAAAAT
Found at i:86363912 original size:451 final size:458
Alignment explanation
Indices: 86363074--86363954 Score: 1215
Period size: 451 Copynumber: 1.9 Consensus size: 458
86363064 CCATGTTAGA
* **
86363074 AGGATAAGATCGTACTATGAGACTTTCTAGCATTATTTTGGGGAGCTTTCCCCTTTTTCAGTTTT
1 AGGATAAGATCGTACAACAAGACTTTCTAGCATTATTTTGGGGAGCTTTCCCC--TTTCAGTTTT
* * * *
86363139 TGGACTGTTGATGAAGGAACTCATGGGGCTGAGCATCGGTTGGAATGGATAGGTTTTAAACAAAT
64 TGGACTGTTGATGAAGGAACTCATGGGGCTGAGCATCGATTGGAACGAATAGGTTTTAAACAAAG
* * *
86363204 ATTTTTTTATTTTACAAAATTGGGTTAGTTCCTAACAAAGGAAATTTCTGAACTAAAGCTCTAAA
129 ATTTCTTTATTTTACAAAATTGGGTTAGTTCCTAACAAAGGAAATTTCTAAACTAAAACTCTAAA
*
86363269 TTTCACATATTGGACTAAGTGTTTTAAAAAGAAATTTTTTTTCTTTTGTTGCAAATTTACTTCAG
194 -TT---ATATTGGACTAAGTGTTTTAAAAAGAAATTTTTTTTCTTTTGTTGCAAATTTACTTCAA
* * * **
86363334 TATGTAATAAAAAAAATTTCAAATTGTGGGGTTGGGTCCAGCACATGCATTCTGTAACTGTGGAT
255 TATGTAATAAAAAAAATTTCAAATTGTGGGGTTGAGTCCAGCACACGCATGCCATAACTGTGGAT
* ** ** * *
86363399 TTAAGTTCTTCATTGATTCCTTCATTGATTTTTCAATCCAGCCTTTGAAAACAAAGAAGAAAAAA
320 CTAAACTCTTCATCAATTCCTTCATCGATTTTTCAATCCAGCCTTTGAAAACAAAAAAGAAAAAA
*
86363464 GAAAACTCAAAAATTAGCTATGAATTTAAGCTTGAAAAAAACTCAAACTAGATTATTATTTCATC
385 GAAAACCCAAAAATTAGCTATGAATTTAAGCTTGAAAAAAACTCAAACTAGATTATTATTTCATC
86363529 TATATCAAG
450 TATATCAAG
* * **
86363538 AGGATAAGATCGTACAACAAGAC-TTCTTGGCATTATTTTGGGGAGCTTTTCCC-TTCCTTTTTT
1 AGGATAAGATCGTACAACAAGACTTTC-TAGCATTATTTTGGGGAGCTTTCCCCTTTCAGTTTTT
* * * * *
86363601 GGATTGTTGATGGAGGAACTCATGGGGTTGAGCATCGATTGGAACGAATGGGTTTTTAACAAAGA
65 GGACTGTTGATGAAGGAACTCATGGGGCTGAGCATCGATTGGAACGAATAGGTTTTAAACAAAGA
* * *
86363666 TATTCTTTATTTTACAGATTTGGGTTAGTTCCTAACAAAGGAAATTTCTAAACTAAAATTCTAAA
130 T-TTCTTTATTTTACAAAATTGGGTTAGTTCCTAACAAAGGAAATTTCTAAACTAAAACTCTAAA
* * * *
86363731 -T-T-TT-G-C-AAGTGTTTTACAAAGAAA-TTTTTTTCTTTTGTTGCAAATTTGCTTCAATGTT
194 TTATATTGGACTAAGTGTTTTAAAAAGAAATTTTTTTTCTTTTGTTGCAAATTTACTTCAATATG
* * *
86363789 TAATAAAGAAATTTTCAAATTTTGGGGTTGAGTCCAGCACACGCATGCCATAACTGTGGATCTAA
259 TAATAAAAAAAATTTCAAATTGTGGGGTTGAGTCCAGCACACGCATGCCATAACTGTGGATCTAA
*
86363854 ACTCTT-ATCCAATTCCTTCATCGATTTTTCAATTCAGCCTTTGAAAACAAAAAAGAAAAAAGAA
324 ACTCTTCAT-CAATTCCTTCATCGATTTTTCAATCCAGCCTTTGAAAACAAAAAAGAAAAAAGAA
86363918 AACCCAAAAATTAGCTATGAATTTAAGCTTGAAAAAA
388 AACCCAAAAATTAGCTATGAATTTAAGCTTGAAAAAA
86363955 TATGAAATCA
Statistics
Matches: 370, Mismatches: 44, Indels: 19
0.85 0.10 0.04
Matches are distributed among these distances:
450 2 0.01
451 176 0.48
452 17 0.05
453 1 0.00
454 1 0.00
455 2 0.01
456 1 0.00
460 1 0.00
461 65 0.18
462 57 0.15
463 3 0.01
464 44 0.12
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (458 bp):
AGGATAAGATCGTACAACAAGACTTTCTAGCATTATTTTGGGGAGCTTTCCCCTTTCAGTTTTTG
GACTGTTGATGAAGGAACTCATGGGGCTGAGCATCGATTGGAACGAATAGGTTTTAAACAAAGAT
TTCTTTATTTTACAAAATTGGGTTAGTTCCTAACAAAGGAAATTTCTAAACTAAAACTCTAAATT
ATATTGGACTAAGTGTTTTAAAAAGAAATTTTTTTTCTTTTGTTGCAAATTTACTTCAATATGTA
ATAAAAAAAATTTCAAATTGTGGGGTTGAGTCCAGCACACGCATGCCATAACTGTGGATCTAAAC
TCTTCATCAATTCCTTCATCGATTTTTCAATCCAGCCTTTGAAAACAAAAAAGAAAAAAGAAAAC
CCAAAAATTAGCTATGAATTTAAGCTTGAAAAAAACTCAAACTAGATTATTATTTCATCTATATC
AAG
Found at i:86368990 original size:130 final size:130
Alignment explanation
Indices: 86368853--86369154 Score: 374
Period size: 130 Copynumber: 2.3 Consensus size: 130
86368843 GCAAAAATTG
* * *
86368853 TTCATGATCGTAAAGCAATGAACTTAGGCTGTGATCATAAATCAACAAGCCTTAACAATATTAGT
1 TTCATGATCGTAAATCAATGAACTTAGGCTGTGATCGTAAATCAACAAGCCTTAACAATATCAGT
** * * * * * *
86368918 TATGATCA-TAAATCAGTGATCTGTTTGGAGTTG-TACTCGTAAATCAGTTAACTCAAGGAAGAT
66 TATGAT-AGTAAATCAACGAGCTGTTAGGAGCTGCGA-TCATAAATCAGCTAACTCAAGGAAGAT
86368981 TT
129 TT
* * * *
86368983 TTCATGATCGTAAATCAATAAACTTTGGCTGTGATCGTAAATCAACGAGCCTTAATAATATCAGT
1 TTCATGATCGTAAATCAATGAACTTAGGCTGTGATCGTAAATCAACAAGCCTTAACAATATCAGT
* * *
86369048 TGTGATAGTAAATTAACGAGCTGTTAGGAGCTGCGATCATAAATCAGCTAACTCAGGGAAGATTT
66 TATGATAGTAAATCAACGAGCTGTTAGGAGCTGCGATCATAAATCAGCTAACTCAAGGAAGATTT
* * **
86369113 TTCATGATTGTAAATCAATGAGCTCGGGCTGTGATCGTAAAT
1 TTCATGATCGTAAATCAATGAACTTAGGCTGTGATCGTAAAT
86369155 TAGCTAACTT
Statistics
Matches: 147, Mismatches: 23, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
129 1 0.01
130 145 0.99
131 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (130 bp):
TTCATGATCGTAAATCAATGAACTTAGGCTGTGATCGTAAATCAACAAGCCTTAACAATATCAGT
TATGATAGTAAATCAACGAGCTGTTAGGAGCTGCGATCATAAATCAGCTAACTCAAGGAAGATTT
Found at i:86369230 original size:192 final size:191
Alignment explanation
Indices: 86368976--86369322 Score: 478
Period size: 192 Copynumber: 1.8 Consensus size: 191
86368966 TAACTCAAGG
* * *
86368976 AAGATTTTTCATGATCGTAAATCAATAAACTTTGGCTGTGATCGTAAATCAACGAGCCTTAATAA
1 AAGATTGTTCATAATCGTAAATCAATAAACTTAGGCTGTGATCGTAAATCAACGAGCCTTAATAA
* * * * *
86369041 TATCAGTTGTGATAGTAAATTAACGAGCTGTTAGGAGCTGCGATCATAAATCAGCTAACTCAGGG
66 TATCAGTTGTGATAATAAATCAACGAGCTATTAGAAGCTGCGATCATAAATCAGCTAACTCA-GA
* **
86369106 AAGATTTTTCATGATTGTAAATCAATGAGCTCGGGCTGTGATCGTAAATTAGCTAACTTAAA
130 AAGATTATTCATGATCATAAATCAATGAGCTCGGGCTGTGATCGTAAATTAGCTAACTTAAA
* * * * * **
86369168 AAGATTGTTCATAATTGTAAATCAGTGAACTTAGGTTGTGGTCGTAAATCAGTGAGCCTTAATAA
1 AAGATTGTTCATAATCGTAAATCAATAAACTTAGGCTGTGATCGTAAATCAACGAGCCTTAATAA
* * * * *
86369233 TATCAGTTGTGATAATGAATCAACGAGCTATTTGAAGTTGCTATCGTAAATCAGCTAACTCAGAA
66 TATCAGTTGTGATAATAAATCAACGAGCTATTAGAAGCTGCGATCATAAATCAGCTAACTCAGAA
86369298 AGATTATTCATGATCATAAATCAAT
131 AGATTATTCATGATCATAAATCAAT
86369323 TAACTTAGGT
Statistics
Matches: 132, Mismatches: 23, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
191 24 0.18
192 108 0.82
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (191 bp):
AAGATTGTTCATAATCGTAAATCAATAAACTTAGGCTGTGATCGTAAATCAACGAGCCTTAATAA
TATCAGTTGTGATAATAAATCAACGAGCTATTAGAAGCTGCGATCATAAATCAGCTAACTCAGAA
AGATTATTCATGATCATAAATCAATGAGCTCGGGCTGTGATCGTAAATTAGCTAACTTAAA
Found at i:86369382 original size:192 final size:192
Alignment explanation
Indices: 86368988--86369384 Score: 440
Period size: 192 Copynumber: 2.1 Consensus size: 192
86368978 GATTTTTCAT
*
86368988 GATCGTAAATCAATAAACTTTGGCTGTGATCGTAAATCAACGAGCCTTAATAATATCAGTTGTGA
1 GATCGTAAATCAATAAACTTAGGCTGTGATCGTAAATCAACGAGCCTTAATAATATCAGTTGTGA
* * * * * *
86369053 TAGTAAATTAACGAGCTGTTAGGAGCTGCGATCATAAATCAGCTAACTCAGGGAAGATTTTTCAT
66 TAATAAATCAACGAGCTATTAGAAGCTGCGATCATAAATCAGCTAACTCAGGAAAGATTATTCAT
** * * * * * *
86369118 GATTGTAAATCAATGAGCTCGGGCTGTGATCGTAAATTAGCTAACTTAAAAAGATTGTTCAT
131 GATCATAAATCAATGAACTCAGGCTGTGATCATAAATCAGCTAACTTAAAAAGATTGCTCAG
* * * * * * **
86369180 AATTGTAAATCAGTGAACTTAGGTTGTGGTCGTAAATCAGTGAGCCTTAATAATATCAGTTGTGA
1 GATCGTAAATCAATAAACTTAGGCTGTGATCGTAAATCAACGAGCCTTAATAATATCAGTTGTGA
* * * * *
86369245 TAATGAATCAACGAGCTATTTGAAGTTGCTATCGTAAATCAGCTAACTCA-GAAAGATTATTCAT
66 TAATAAATCAACGAGCTATTAGAAGCTGCGATCATAAATCAGCTAACTCAGGAAAGATTATTCAT
* * * * **
86369309 GATCATAAATCAATTAACTTAGGTTGTGATCATAAATCAG-TGAGACTTAATAATTTTAGCT-AG
131 GATCATAAATCAATGAACTCAGGCTGTGATCATAAATCAGCT-A-ACTTAAAAAGATT-GCTCAG
86369372 GATCGTAAATCAA
1 GATCGTAAATCAA
86369385 CGAGCTGTTT
Statistics
Matches: 165, Mismatches: 37, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
190 1 0.01
191 44 0.27
192 118 0.72
193 2 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (192 bp):
GATCGTAAATCAATAAACTTAGGCTGTGATCGTAAATCAACGAGCCTTAATAATATCAGTTGTGA
TAATAAATCAACGAGCTATTAGAAGCTGCGATCATAAATCAGCTAACTCAGGAAAGATTATTCAT
GATCATAAATCAATGAACTCAGGCTGTGATCATAAATCAGCTAACTTAAAAAGATTGCTCAG
Found at i:86369510 original size:128 final size:129
Alignment explanation
Indices: 86369158--86369555 Score: 489
Period size: 129 Copynumber: 3.1 Consensus size: 129
86369148 CGTAAATTAG
* * * * * *
86369158 CTAACTTAAAAAGATTGTTCATAATTGTAAATCAGTGAACTTAGGTTGTGGTCGTAAATCAGTGA
1 CTAACTCAGAAAGATTGTTCATAATCGTAAATCAATGAACTTAGGTTGTGATCATAAATCAGTGA
* * * * *
86369223 GCCTTAATAATATCAGTTGTGATAATG-AATCAACGAGCTATTTGAAGTTGCTATCGTAAATCAG
66 GCCTTAATAATATCAGTTGTGATCA-GAAATCAACGAGCTATTTGGAGTTGCAATCATAAATCAA
* * * *
86369287 CTAACTCAGAAAGATTATTCATGATCATAAATCAATTAACTTAGGTTGTGATCATAAATCAGTGA
1 CTAACTCAGAAAGATTGTTCATAATCGTAAATCAATGAACTTAGGTTGTGATCATAAATCAGTGA
* * * * * *
86369352 GACTTAATAATTTTAGCTAG-GATC-GTAAATCAACGAGCTGTTTGGAGTTGCGATCATAAATCA
66 GCCTTAATAATATCAG-TTGTGATCAG-AAATCAACGAGCTATTTGGAGTTGCAATCATAAATCA
86369415 A
129 A
* * * *
86369416 CTAACTCAGAAAGATTGTT-TTAATCGTAAATAAATGAACTTAGGTTGTGATCCTAAATCAGCGA
1 CTAACTCAGAAAGATTGTTCATAATCGTAAATCAATGAACTTAGGTTGTGATCATAAATCAGTGA
* *
86369480 GCCTTAATAATATCAGTTGTGATCAGAAATCAACGAGCTATTTGGAGTTACAATCATAAATCAT
66 GCCTTAATAATATCAGTTGTGATCAGAAATCAACGAGCTATTTGGAGTTGCAATCATAAATCAA
*
86369544 CTAACTTAGAAA
1 CTAACTCAGAAA
86369556 AAGGTTATTC
Statistics
Matches: 227, Mismatches: 37, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
127 3 0.01
128 100 0.44
129 122 0.54
130 2 0.01
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (129 bp):
CTAACTCAGAAAGATTGTTCATAATCGTAAATCAATGAACTTAGGTTGTGATCATAAATCAGTGA
GCCTTAATAATATCAGTTGTGATCAGAAATCAACGAGCTATTTGGAGTTGCAATCATAAATCAA
Found at i:86375421 original size:16 final size:17
Alignment explanation
Indices: 86375390--86375423 Score: 52
Period size: 16 Copynumber: 2.0 Consensus size: 17
86375380 CGGGTTTGGG
86375390 ACACGGGCGTATGTGACC
1 ACACGGGCG-ATGTGACC
86375408 ACACGGGC-ATGTGACC
1 ACACGGGCGATGTGACC
86375424 CTTGTTTAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
18 8 0.50
ACGTcount: A:0.24, C:0.29, G:0.32, T:0.15
Consensus pattern (17 bp):
ACACGGGCGATGTGACC
Found at i:86380466 original size:33 final size:33
Alignment explanation
Indices: 86380413--86380481 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 33
86380403 CCTGCATGGT
* * * *
86380413 GATGGGAACCCATCATGTGTGAGCTCATGAAAG
1 GATGCGAACCCATCACGTGTGAACCCATGAAAG
* *
86380446 GATGCGAACTCATCACGTGTGAACCCATGTAAG
1 GATGCGAACCCATCACGTGTGAACCCATGAAAG
86380479 GAT
1 GAT
86380482 ACAAACGGGT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (33 bp):
GATGCGAACCCATCACGTGTGAACCCATGAAAG
Found at i:86382199 original size:24 final size:23
Alignment explanation
Indices: 86382143--86382200 Score: 66
Period size: 22 Copynumber: 2.5 Consensus size: 23
86382133 TTTAAATGAT
86382143 TAAATATCAAATTTAACAAAAAA
1 TAAATATCAAATTTAACAAAAAA
*
86382166 TAAA-AGTCAAA-TTAATAAAAAA
1 TAAATA-TCAAATTTAACAAAAAA
86382188 TGTAAATATCAAA
1 --TAAATATCAAA
86382201 AATTAAATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
22 11 0.37
23 9 0.30
24 9 0.30
25 1 0.03
ACGTcount: A:0.64, C:0.07, G:0.03, T:0.26
Consensus pattern (23 bp):
TAAATATCAAATTTAACAAAAAA
Done.