Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 26 of 322
Found at i:7648042 original size:13 final size:13
Alignment explanation
Indices: 7648019--7648075 Score: 53
Period size: 13 Copynumber: 4.3 Consensus size: 13
7648009 TGAATGAATG
*
7648019 GAAACGATTATAT
1 GAAATGATTATAT
* * *
7648032 GTATTGATTATAC
1 GAAATGATTATAT
7648045 GAAATGATTATAT
1 GAAATGATTATAT
7648058 GGAAATAGA-TATAT
1 -GAAAT-GATTATAT
7648072 GAAA
1 GAAA
7648076 GGGAAATTTG
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
13 23 0.66
14 10 0.29
15 2 0.06
ACGTcount: A:0.46, C:0.04, G:0.18, T:0.33
Consensus pattern (13 bp):
GAAATGATTATAT
Found at i:7653972 original size:34 final size:34
Alignment explanation
Indices: 7653929--7653996 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
7653919 GGTAAGATTA
7653929 ATTAGACTTGTTAGGTCTTTTGCTTCTATTTTAT
1 ATTAGACTTGTTAGGTCTTTTGCTTCTATTTTAT
*
7653963 ATTAGACTTGTTGGGTCTTTTGCTTCTATTTTAT
1 ATTAGACTTGTTAGGTCTTTTGCTTCTATTTTAT
7653997 GTAATGAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.16, C:0.12, G:0.16, T:0.56
Consensus pattern (34 bp):
ATTAGACTTGTTAGGTCTTTTGCTTCTATTTTAT
Found at i:7662818 original size:47 final size:46
Alignment explanation
Indices: 7662767--7662927 Score: 140
Period size: 47 Copynumber: 3.6 Consensus size: 46
7662757 GATTTAATAA
7662767 AATTTAAAATAATTATAACTAATAAATTATCTTATATGAATTTGTAT
1 AATTTAAAATAATTATAA-TAATAAATTATCTTATATGAATTTGTAT
* * * * *
7662814 AATTTAAAATAATTATTATTACATATAAT-TTA-AT-AA---GATAT
1 AATTTAAAATAATTATAATAATAAATTATCTTATATGAATTTG-TAT
* * * *
7662855 AATTTCATAA-AATTATTGATAATAAATTTTCTTATATGAATTTATAT
1 AATTT-AAAATAATTA-TAATAATAAATTATCTTATATGAATTTGTAT
7662902 AATTTAAAATAATT-TATATAATAAAT
1 AATTTAAAATAATTATA-ATAATAAAT
7662928 CTATTGTATA
Statistics
Matches: 88, Mismatches: 15, Indels: 23
0.70 0.12 0.18
Matches are distributed among these distances:
40 1 0.01
41 13 0.15
42 11 0.12
43 5 0.06
44 4 0.05
45 6 0.07
46 19 0.22
47 29 0.33
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (46 bp):
AATTTAAAATAATTATAATAATAAATTATCTTATATGAATTTGTAT
Found at i:7668153 original size:21 final size:22
Alignment explanation
Indices: 7668129--7668173 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
7668119 TAAAAGTTAT
* *
7668129 AAAAATTA-TTAAACTTTAATA
1 AAAAAATATTTAAAATTTAATA
*
7668150 AAAAAATATTTAAAATTTACTA
1 AAAAAATATTTAAAATTTAATA
7668172 AA
1 AA
7668174 CATTAGAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (22 bp):
AAAAAATATTTAAAATTTAATA
Found at i:7668222 original size:18 final size:19
Alignment explanation
Indices: 7668181--7668222 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
7668171 AAACATTAGA
*
7668181 ATAAATATATAAAAACAGT
1 ATAAAAATATAAAAACAGT
*
7668200 A-AAAAATATAAAAA-ATT
1 ATAAAAATATAAAAACAGT
7668217 ATAAAA
1 ATAAAA
7668223 TTTTATAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 3 0.15
18 16 0.80
19 1 0.05
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (19 bp):
ATAAAAATATAAAAACAGT
Found at i:7668242 original size:20 final size:20
Alignment explanation
Indices: 7668219--7668264 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
7668209 AAAAAATTAT
*
7668219 AAAATTTTATAAATAT-CATA
1 AAAATATTATAAA-ATGCATA
*
7668239 AAAAAATTATAAAATGCATA
1 AAAATATTATAAAATGCATA
7668259 AAAATA
1 AAAATA
7668265 CTCATTTAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.30
Consensus pattern (20 bp):
AAAATATTATAAAATGCATA
Found at i:7668501 original size:10 final size:10
Alignment explanation
Indices: 7668488--7668560 Score: 55
Period size: 10 Copynumber: 7.5 Consensus size: 10
7668478 CTTTATAAAA
7668488 TTTTATATAT
1 TTTTATATAT
*
7668498 TTTTCTATAT
1 TTTTATATAT
*
7668508 TTCTATATA-
1 TTTTATATAT
7668517 TTTTATA-AT
1 TTTTATATAT
**
7668526 GTTTTA-CGAT
1 -TTTTATATAT
7668536 TTTTATAATAT
1 TTTTAT-ATAT
*
7668547 TTTTCTA-AT
1 TTTTATATAT
7668556 TTTTA
1 TTTTA
7668561 ATAAAAATAA
Statistics
Matches: 49, Mismatches: 9, Indels: 11
0.71 0.13 0.16
Matches are distributed among these distances:
8 1 0.02
9 17 0.35
10 24 0.49
11 7 0.14
ACGTcount: A:0.27, C:0.05, G:0.03, T:0.64
Consensus pattern (10 bp):
TTTTATATAT
Found at i:7668558 original size:19 final size:19
Alignment explanation
Indices: 7668516--7668563 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
7668506 ATTTCTATAT
*
7668516 ATTTTATAATGTTTTACGA
1 ATTTTATAATATTTTACGA
* * *
7668535 TTTTTATAATATTTTTCTA
1 ATTTTATAATATTTTACGA
7668554 ATTTT-TAATA
1 ATTTTATAATA
7668564 AAAATAAATA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
18 5 0.21
19 19 0.79
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.60
Consensus pattern (19 bp):
ATTTTATAATATTTTACGA
Found at i:7669088 original size:19 final size:21
Alignment explanation
Indices: 7669051--7669096 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
7669041 TTTTCTTTTT
*
7669051 TTTTTTCATTGAATTATT-AA
1 TTTTTTCATTGAATAATTAAA
*
7669071 TTTTTT-ATTTAATAATTAAA
1 TTTTTTCATTGAATAATTAAA
7669091 TTTTTT
1 TTTTTT
7669097 GAAATCAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (21 bp):
TTTTTTCATTGAATAATTAAA
Found at i:7675732 original size:13 final size:13
Alignment explanation
Indices: 7675714--7675739 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7675704 GGTTGTTAAA
7675714 ATTTTGACACCTG
1 ATTTTGACACCTG
7675727 ATTTTGACACCTG
1 ATTTTGACACCTG
7675740 CCTTTGCCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38
Consensus pattern (13 bp):
ATTTTGACACCTG
Found at i:7677953 original size:21 final size:21
Alignment explanation
Indices: 7677929--7677969 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7677919 TTGGCATGTT
7677929 ATTTTTATTATTTTAATATAA
1 ATTTTTATTATTTTAATATAA
* *
7677950 ATTTTTATTTTTTTTATATA
1 ATTTTTATTATTTTAATATA
7677970 GGTAAAAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (21 bp):
ATTTTTATTATTTTAATATAA
Found at i:7680234 original size:18 final size:18
Alignment explanation
Indices: 7680208--7680242 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7680198 TATGAGCTAG
* *
7680208 AGCTCGAGCTAGAGGCCA
1 AGCTAGAGCCAGAGGCCA
7680226 AGCTAGAGCCAGAGGCC
1 AGCTAGAGCCAGAGGCC
7680243 GGATTATTTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.29, G:0.34, T:0.09
Consensus pattern (18 bp):
AGCTAGAGCCAGAGGCCA
Found at i:7680897 original size:48 final size:48
Alignment explanation
Indices: 7680843--7680981 Score: 278
Period size: 48 Copynumber: 2.9 Consensus size: 48
7680833 TAATTGCAAC
7680843 ATTACAACATTAAAACTTGGAACAAACTTTGTAATATAAATTAAATAT
1 ATTACAACATTAAAACTTGGAACAAACTTTGTAATATAAATTAAATAT
7680891 ATTACAACATTAAAACTTGGAACAAACTTTGTAATATAAATTAAATAT
1 ATTACAACATTAAAACTTGGAACAAACTTTGTAATATAAATTAAATAT
7680939 ATTACAACATTAAAACTTGGAACAAACTTTGTAATATAAATTA
1 ATTACAACATTAAAACTTGGAACAAACTTTGTAATATAAATTA
7680982 GGTACATTGG
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 91 1.00
ACGTcount: A:0.50, C:0.11, G:0.06, T:0.33
Consensus pattern (48 bp):
ATTACAACATTAAAACTTGGAACAAACTTTGTAATATAAATTAAATAT
Found at i:7683090 original size:39 final size:39
Alignment explanation
Indices: 7683034--7683190 Score: 278
Period size: 39 Copynumber: 4.0 Consensus size: 39
7683024 CAAGACACTA
7683034 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
* *
7683073 GGAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
7683112 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
* *
7683151 GAAATGTATCCGAGCTAAAGTCCCGCAGGCTTTGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
7683190 G
1 G
7683191 TAATATAATT
Statistics
Matches: 112, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 112 1.00
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.24
Consensus pattern (39 bp):
GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
Found at i:7689381 original size:33 final size:33
Alignment explanation
Indices: 7689339--7689403 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
7689329 TTTTAGGAAG
7689339 AGAAGTAATCTGATCAGACGGTA-AAGGTTGAAA
1 AGAAGTAATCTGATCAGACGGTAGAA-GTTGAAA
7689372 AGAAGTAATCTGATCAGACGGTAGAAGTTGAA
1 AGAAGTAATCTGATCAGACGGTAGAAGTTGAA
7689404 TGTGATGAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
33 29 0.94
34 2 0.06
ACGTcount: A:0.42, C:0.09, G:0.28, T:0.22
Consensus pattern (33 bp):
AGAAGTAATCTGATCAGACGGTAGAAGTTGAAA
Found at i:7691177 original size:15 final size:14
Alignment explanation
Indices: 7691153--7691182 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
7691143 GGGTTATGGG
7691153 AAACAGTAGAAGAA
1 AAACAGTAGAAGAA
7691167 AAACAAGTAGAAGAA
1 AAAC-AGTAGAAGAA
7691182 A
1 A
7691183 CCAAGAAGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.67, C:0.07, G:0.20, T:0.07
Consensus pattern (14 bp):
AAACAGTAGAAGAA
Found at i:7705060 original size:19 final size:19
Alignment explanation
Indices: 7705036--7705076 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
7705026 GGCATCTTTC
7705036 TTTCATATAATCTTTTCTA
1 TTTCATATAATCTTTTCTA
7705055 TTTCATATAATCTTTTCTA
1 TTTCATATAATCTTTTCTA
7705074 TTT
1 TTT
7705077 TAAAAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.24, C:0.15, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTCATATAATCTTTTCTA
Found at i:7705213 original size:30 final size:28
Alignment explanation
Indices: 7705179--7705248 Score: 79
Period size: 31 Copynumber: 2.4 Consensus size: 28
7705169 TAACATATGG
*
7705179 AATTTTTAAATTAACAAACT-TGATAGATTA
1 AATTTTTAAAATAA-AAA-TATGA-AGATTA
7705209 AATTTTTTAAAATAAAAATATGAAGATTA
1 AA-TTTTTAAAATAAAAATATGAAGATTA
*
7705238 AATTCTTAAAA
1 AATTTTTAAAA
7705249 GTATGAAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
28 8 0.22
29 9 0.25
30 8 0.22
31 11 0.31
ACGTcount: A:0.51, C:0.04, G:0.06, T:0.39
Consensus pattern (28 bp):
AATTTTTAAAATAAAAATATGAAGATTA
Found at i:7705235 original size:29 final size:31
Alignment explanation
Indices: 7705181--7705241 Score: 83
Period size: 29 Copynumber: 2.0 Consensus size: 31
7705171 ACATATGGAA
*
7705181 TTTTTAAATTAACAAACTTGATAGATTAAAT
1 TTTTTAAAATAACAAACTTGATAGATTAAAT
7705212 TTTTTAAAATAA-AAA-TATGA-AGATTAAAT
1 TTTTTAAAATAACAAACT-TGATAGATTAAAT
7705241 T
1 T
7705242 CTTAAAAGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
29 11 0.39
30 6 0.21
31 11 0.39
ACGTcount: A:0.49, C:0.03, G:0.07, T:0.41
Consensus pattern (31 bp):
TTTTTAAAATAACAAACTTGATAGATTAAAT
Found at i:7715716 original size:14 final size:16
Alignment explanation
Indices: 7715686--7715717 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
7715676 TCTGGACATG
7715686 ATAAATAAATATTAAA
1 ATAAATAAATATTAAA
7715702 ATAAA-AAAT-TTAAA
1 ATAAATAAATATTAAA
7715716 AT
1 AT
7715718 TTTAAAGTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 4 0.25
16 5 0.31
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
ATAAATAAATATTAAA
Found at i:7733243 original size:41 final size:41
Alignment explanation
Indices: 7733179--7733263 Score: 143
Period size: 41 Copynumber: 2.1 Consensus size: 41
7733169 AAAAAAAAAT
* *
7733179 AGTTCAGATCCTTTTGTTCTAGTTGTGTTGGTTGAAGGGAA
1 AGTTCAAATCCTTTTATTCTAGTTGTGTTGGTTGAAGGGAA
*
7733220 AGTTCAAATCCTTTTATTTTAGTTGTGTTGGTTGAAGGGAA
1 AGTTCAAATCCTTTTATTCTAGTTGTGTTGGTTGAAGGGAA
7733261 AGT
1 AGT
7733264 GGTTGCCCAA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.22, C:0.08, G:0.27, T:0.42
Consensus pattern (41 bp):
AGTTCAAATCCTTTTATTCTAGTTGTGTTGGTTGAAGGGAA
Found at i:7734407 original size:29 final size:30
Alignment explanation
Indices: 7734350--7734407 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
7734340 TGGAAGGGAA
** * *
7734350 GTAAAAGTTTTGGGGGGAAAGTGAGAAGGG
1 GTAAAAGTTTTGGAAGGAAAGTAAAAAGGG
7734380 GTAAAAGTTTT-GAAGGAAAGTAAAAAGG
1 GTAAAAGTTTTGGAAGGAAAGTAAAAAGG
7734408 TTTGAGAGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 13 0.54
30 11 0.46
ACGTcount: A:0.41, C:0.00, G:0.38, T:0.21
Consensus pattern (30 bp):
GTAAAAGTTTTGGAAGGAAAGTAAAAAGGG
Found at i:7734559 original size:18 final size:18
Alignment explanation
Indices: 7734536--7734570 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7734526 ATTCGAGTTG
7734536 ACTCGAACAACTCGATTA
1 ACTCGAACAACTCGATTA
* *
7734554 ACTCGAATAATTCGATT
1 ACTCGAACAACTCGATT
7734571 CGTTTAACTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (18 bp):
ACTCGAACAACTCGATTA
Found at i:7738001 original size:25 final size:25
Alignment explanation
Indices: 7737969--7738023 Score: 101
Period size: 25 Copynumber: 2.2 Consensus size: 25
7737959 GGAATTGAAG
*
7737969 CATGGGTATTCTTGGAGGAGCAGCA
1 CATGGGTATTCTTAGAGGAGCAGCA
7737994 CATGGGTATTCTTAGAGGAGCAGCA
1 CATGGGTATTCTTAGAGGAGCAGCA
7738019 CATGG
1 CATGG
7738024 TTATGCTAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.25, C:0.16, G:0.35, T:0.24
Consensus pattern (25 bp):
CATGGGTATTCTTAGAGGAGCAGCA
Found at i:7744667 original size:54 final size:52
Alignment explanation
Indices: 7744609--7744723 Score: 126
Period size: 54 Copynumber: 2.1 Consensus size: 52
7744599 AAATTACTGC
*
7744609 AATACCCT-TATAGGGTAGAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAA
1 AATACCCTGT-TAGGG-A-AATTACCAAAATACCCTC-AATTTGTAAAATTACCAA
* * *
7744663 AATACCACTGGTTTGTGAAATTACTAAAATACCCTCAATTTGTAAAATTACCAA
1 AATACC-CT-GTTAGGGAAATTACCAAAATACCCTCAATTTGTAAAATTACCAA
7744717 AATACCC
1 AATACCC
7744724 CTGATTTACA
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
53 1 0.02
54 44 0.83
55 4 0.08
56 3 0.06
57 1 0.02
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.29
Consensus pattern (52 bp):
AATACCCTGTTAGGGAAATTACCAAAATACCCTCAATTTGTAAAATTACCAA
Found at i:7744801 original size:27 final size:27
Alignment explanation
Indices: 7744627--7744816 Score: 152
Period size: 27 Copynumber: 7.0 Consensus size: 27
7744617 TATAGGGTAG
* * *
7744627 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTGTAA
* *
7744654 AATTACCAAAATACCAC-TGGTTTGTGA
1 AATTACTAAAATACC-CTTGGTTTGTAA
***
7744681 AATTACTAAAATACCCTCAATTTGTAA
1 AATTACTAAAATACCCTTGGTTTGTAA
* * * **
7744708 AATTACCAAAATACCCCTGATTTACAA
1 AATTACTAAAATACCCTTGGTTTGTAA
* *
7744735 AATTAC-AGAAATACCCTTGACTTTCTAAA
1 AATTACTA-AAATACCCTTG-GTTTGT-AA
* *
7744764 AATTA-TAGAAATACCATTGGTTTATAA
1 AATTACTA-AAATACCCTTGGTTTGTAA
*
7744791 AATTACTGAAATACCCTTGGTTTGTA
1 AATTACTAAAATACCCTTGGTTTGTA
7744817 GATTTAGCAA
Statistics
Matches: 133, Mismatches: 23, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.02
27 103 0.77
28 9 0.07
29 19 0.14
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (27 bp):
AATTACTAAAATACCCTTGGTTTGTAA
Found at i:7745817 original size:24 final size:25
Alignment explanation
Indices: 7745741--7745810 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
7745731 AGGAAGTGCT
* * *
7745741 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
7745766 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
7745791 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCCAGTT
7745811 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:7745823 original size:24 final size:25
Alignment explanation
Indices: 7745741--7745823 Score: 84
Period size: 25 Copynumber: 3.4 Consensus size: 25
7745731 AGGAAGTGCT
* *
7745741 AAAAG-GGCTATGCCCCAGTTTACC
1 AAAAGAGGCTTTGCCCCAGTTTATC
7745765 GAAAAG-GGCTTTGCCCCAGTTTATC
1 -AAAAGAGGCTTTGCCCCAGTTTATC
* *
7745790 AAAA-AGGGCTTTGCCCTAG-TTATT
1 AAAAGA-GGCTTTGCCCCAGTTTATC
7745814 AAAAGAGGCT
1 AAAAGAGGCT
7745824 AGGCCTCCAG
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
24 16 0.31
25 35 0.69
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCCAGTTTATC
Found at i:7746079 original size:31 final size:31
Alignment explanation
Indices: 7746030--7746112 Score: 152
Period size: 31 Copynumber: 2.7 Consensus size: 31
7746020 AGCTTACAGT
7746030 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
7746060 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
7746091 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
7746113 TCGAGAGTGA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
30 16 0.31
31 36 0.69
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:7746168 original size:29 final size:28
Alignment explanation
Indices: 7746126--7746180 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
7746116 AGAGTGAATT
* *
7746126 AGGGCTTAGGCCCATACTGCTACTGTTTA
1 AGGGCTAAGGCCCAGACTG-TACTGTTTA
7746155 AGGGCTAAGGCCCAGACTGTACTGTT
1 AGGGCTAAGGCCCAGACTGTACTGTT
7746181 ACTGAATAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (28 bp):
AGGGCTAAGGCCCAGACTGTACTGTTTA
Found at i:7747836 original size:43 final size:43
Alignment explanation
Indices: 7747783--7747869 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 43
7747773 AGGATTTTAG
* *
7747783 CTTTTCTGAAACCCTAAGTTCGGCTCGTTGGGTCATTTGGGCT
1 CTTTTCTGAAACCCTAACTTCGGCTAGTTGGGTCATTTGGGCT
* *
7747826 CTTTTTTGAAACCCTAACTTTGGCTAGTTGGGTCATTTGGGCT
1 CTTTTCTGAAACCCTAACTTCGGCTAGTTGGGTCATTTGGGCT
7747869 C
1 C
7747870 CGGGTTTAGG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.15, C:0.22, G:0.24, T:0.39
Consensus pattern (43 bp):
CTTTTCTGAAACCCTAACTTCGGCTAGTTGGGTCATTTGGGCT
Found at i:7748771 original size:86 final size:88
Alignment explanation
Indices: 7748577--7748976 Score: 420
Period size: 88 Copynumber: 4.6 Consensus size: 88
7748567 TCTTTACTCG
* ** * * * *
7748577 GCATGTGATCCTGA-GCTCAACTCATTTCTCGCAATATGAATTGACTCTTT-AAAACTAGACATT
1 GCATGTGA-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAA-TATAAATT
*
7748640 -AAAAACAGAAATTGAAAATAGCTCA
63 GAAAAACAGAAATTGAAAATACCTCA
* * * * * * *
7748665 ACACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTG-GTTTTGAAACT-TAATTTGAA
1 GCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAATATAAATTGAA
* **
7748728 AAGCAGATTTTGAAAATACCTC-
66 AAACAGAAATTGAAAATACCTCA
* * *
7748750 GACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAATCGATTTTTAAAAAAATATAAATT
1 G-CATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT--GAAAATATAAATT
7748815 GAAAAACAGAAATTGAAAATACCTCA
63 GAAAAACAGAAATTGAAAATACCTCA
* * * * *
7748841 GC--GTGTCCTGAGGCTCAACTCACCTCTTGTAATATGAGTTGATTTTTGAAAAGTAGAAATTGA
1 GCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA-TATAAATTGA
*
7748904 AAAACAGAAATTGAAAACACCTCA
65 AAAACAGAAATTGAAAATACCTCA
* *
7748928 GCGTGAGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
7748977 TTGAAAAACA
Statistics
Matches: 255, Mismatches: 45, Indels: 23
0.79 0.14 0.07
Matches are distributed among these distances:
85 3 0.01
86 65 0.25
87 43 0.17
88 71 0.28
89 44 0.17
90 28 0.11
91 1 0.00
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (88 bp):
GCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAATATAAATTGAA
AAACAGAAATTGAAAATACCTCA
Found at i:7748877 original size:174 final size:176
Alignment explanation
Indices: 7748573--7749059 Score: 463
Period size: 174 Copynumber: 2.8 Consensus size: 176
7748563 TTATTCTTTA
* * ** * * *
7748573 CTCGGCATGTGATCCTGA-GCTCAACTCATTTCTCGCAATATGAATTGACTCTTTAAAACTAGAC
1 CTCGACATGTGA-CCCGAGGCTCAACTCACCTCTCGCAATATGAATTGA-TTTTTAAAAATAGAA
*
7748637 ATTAAAAACAGAAATTGAAAATAGCTCAACACGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
64 ATTAAAAACAGAAATTGAAAATACCTCAACACGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
* * * ** *
7748702 GAGTTG-GTTTTG-AAACT-TAATTTGAAAAGCAGATTTTGAAAATAC
129 GAGTTGAGTTTTGAAAACTAGAAATTGAAAAACAGAAATTGAAAACAC
* *
7748747 CTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAATCGATTTTTAAAAAAATATAA
1 CTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTT--AAAAATAGAA
* * * * *
7748812 ATTGAAAAACAGAAATTGAAAATACCTC-A-GCGTG-TCCTGAGGCTCAACTCACCTCTTGTAAT
64 ATT-AAAAACAGAAATTGAAAATACCTCAACACGTGAGCC-AAGGCTCAACTCACCTCTCGCAAT
* *
7748874 ATGAGTTGATTTTTGAAAAGTAGAAATTGAAAAACAGAAATTGAAAACAC
127 ATGAGTTGAGTTTTGAAAACTAGAAATTGAAAAACAGAAATTGAAAACAC
* * *
7748924 CTC-AGCGTGAGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-----T-----
1 CTCGA-CATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTAAAAATAGAAA
* * * *** *
7748978 TGAAAAACAGGAATTGAAAATACCTCAGCGTATGA-CCTGAGGCTCAACTCACCTCTCGCAATAT
65 TTAAAAACAGAAATTGAAAATACCTCAACACGTGAGCC-AAGGCTCAACTCACCTCTCGCAATAT
*
7749042 GAGTTGATTTTTGAAAAC
129 GAGTTGAGTTTTGAAAAC
7749060 AAAAATAAAA
Statistics
Matches: 266, Mismatches: 35, Indels: 32
0.80 0.11 0.10
Matches are distributed among these distances:
164 23 0.09
165 1 0.00
166 47 0.18
170 1 0.00
173 10 0.04
174 71 0.27
175 16 0.06
176 28 0.11
177 69 0.26
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.27
Consensus pattern (176 bp):
CTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTAAAAATAGAAAT
TAAAAACAGAAATTGAAAATACCTCAACACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGA
GTTGAGTTTTGAAAACTAGAAATTGAAAAACAGAAATTGAAAACAC
Found at i:7748962 original size:177 final size:171
Alignment explanation
Indices: 7748591--7749059 Score: 505
Period size: 177 Copynumber: 2.7 Consensus size: 171
7748581 GTGATCCTGA
** *
7748591 GCTCAACTCATTTCTCGCAATATGAATTGACTCTTTAAAACTAGACATT-AAAAACAGAAATTGA
1 GCTCAACTCACCTCTCGCAATATGAATTGA-T-TTTAAAA-TATA-ATTGAAAAACAGAAATTGA
* * * *
7748655 AAATAGCTCAACACGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTTG-GTTTTG-AAA
62 AAATACCTC-A-GCGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA
* * * ** * *
7748717 CTTAATTTGAAAAGCAGATTTTGAAAATACCTCGACATGTGACCCGAG
124 CTGAAATTGAAAAACAGAAATTGAAAACACCTCGACATGAGACCCGAG
*
7748765 GCTCAACTCACCTCTCGCAATATGAATCGATTTTTAAAAAAATATAAATTGAAAAACAGAAATTG
1 GCTCAACTCACCTCTCGCAATATGAATTGA-TTTT---AAAATAT-AATTGAAAAACAGAAATTG
* * * *
7748830 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGTAATATGAGTTGATTTTTGAAAAGT
61 AAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACT
*
7748895 AGAAATTGAAAAACAGAAATTGAAAACACCTC-AGCGTGAGACCCGAG
126 -GAAATTGAAAAACAGAAATTGAAAACACCTCGA-CATGAGACCCGAG
* *
7748942 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTT----T-T--TTGAAAAACAGGAATTGAAAAT
1 GCTCAACTCACCTCTCGCAATATGAATTGATTTTAAAATATAATTGAAAAACAGAAATTGAAAAT
7748999 ACCTCAGCGTATGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAC
66 ACCTCAGCG--TGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAC
7749060 AAAAATAAAA
Statistics
Matches: 255, Mismatches: 28, Indels: 32
0.81 0.09 0.10
Matches are distributed among these distances:
164 30 0.12
166 46 0.18
167 1 0.00
168 1 0.00
173 5 0.02
174 61 0.24
175 14 0.05
176 33 0.13
177 64 0.25
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.27
Consensus pattern (171 bp):
GCTCAACTCACCTCTCGCAATATGAATTGATTTTAAAATATAATTGAAAAACAGAAATTGAAAAT
ACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACTGAAAT
TGAAAAACAGAAATTGAAAACACCTCGACATGAGACCCGAG
Found at i:7749027 original size:77 final size:77
Alignment explanation
Indices: 7748900--7749053 Score: 265
Period size: 77 Copynumber: 2.0 Consensus size: 77
7748890 AAAGTAGAAA
7748900 TTGAAAAACAGAAATTGAAAACACCTCAGCGTGAGACCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAACACCTCAGCGTGAGACCCGAGGCTCAACTCACCTCTCGCAATAT
7748965 GAGTTGATTTTT
66 GAGTTGATTTTT
* * *
7748977 TTGAAAAACAGGAATTGAAAATACCTCAGCGT-ATGACCTGAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAATTGAAAACACCTCAGCGTGA-GACCCGAGGCTCAACTCACCTCTCGCAATA
7749041 TGAGTTGATTTTT
65 TGAGTTGATTTTT
7749054 GAAAACAAAA
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
76 1 0.01
77 72 0.99
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (77 bp):
TTGAAAAACAGAAATTGAAAACACCTCAGCGTGAGACCCGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTT
Found at i:7749929 original size:44 final size:43
Alignment explanation
Indices: 7749868--7749967 Score: 141
Period size: 44 Copynumber: 2.3 Consensus size: 43
7749858 TTTCATCCTA
* *
7749868 ATCTTTTGTGTTAATCAAGACGTCCTTTTC-GAGTTTTCACATTG
1 ATCTTTT-TGTTTATCAAGACGCCCTTTTCAG-GTTTTCACATTG
7749912 ATCATTTTTGTTTATCAAGACGCCCTTTTCAGGTTTTCACATTG
1 ATC-TTTTTGTTTATCAAGACGCCCTTTTCAGGTTTTCACATTG
7749956 ATCTTTTT-TTTA
1 ATCTTTTTGTTTA
7749968 GGCATAATAT
Statistics
Matches: 52, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
42 4 0.08
43 5 0.10
44 38 0.73
45 5 0.10
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (43 bp):
ATCTTTTTGTTTATCAAGACGCCCTTTTCAGGTTTTCACATTG
Found at i:7761885 original size:54 final size:52
Alignment explanation
Indices: 7761827--7761941 Score: 126
Period size: 54 Copynumber: 2.1 Consensus size: 52
7761817 AAATTACTGC
*
7761827 AATACCCT-TATAGGGTAGAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAA
1 AATACCCTGT-TAGGG-A-AATTACCAAAATACCCTC-AATTTGTAAAATTACCAA
* * *
7761881 AATACCACTGGTTTGTGAAATTACTAAAATACCCTCAATTTGTAAAATTACCAA
1 AATACC-CT-GTTAGGGAAATTACCAAAATACCCTCAATTTGTAAAATTACCAA
7761935 AATACCC
1 AATACCC
7761942 CTGATTTACA
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
53 1 0.02
54 44 0.83
55 4 0.08
56 3 0.06
57 1 0.02
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.29
Consensus pattern (52 bp):
AATACCCTGTTAGGGAAATTACCAAAATACCCTCAATTTGTAAAATTACCAA
Found at i:7762019 original size:27 final size:27
Alignment explanation
Indices: 7761845--7762034 Score: 152
Period size: 27 Copynumber: 7.0 Consensus size: 27
7761835 TATAGGGTAG
* * *
7761845 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTGTAA
* *
7761872 AATTACCAAAATACCAC-TGGTTTGTGA
1 AATTACTAAAATACC-CTTGGTTTGTAA
***
7761899 AATTACTAAAATACCCTCAATTTGTAA
1 AATTACTAAAATACCCTTGGTTTGTAA
* * * **
7761926 AATTACCAAAATACCCCTGATTTACAA
1 AATTACTAAAATACCCTTGGTTTGTAA
* *
7761953 AATTAC-AGAAATACCCTTGACTTTCTAAA
1 AATTACTA-AAATACCCTTG-GTTTGT-AA
* *
7761982 AATTA-TAGAAATACCATTGGTTTATAA
1 AATTACTA-AAATACCCTTGGTTTGTAA
*
7762009 AATTACTGAAATACCCTTGGTTTGTA
1 AATTACTAAAATACCCTTGGTTTGTA
7762035 GATTTAGCAA
Statistics
Matches: 133, Mismatches: 23, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.02
27 103 0.77
28 9 0.07
29 19 0.14
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (27 bp):
AATTACTAAAATACCCTTGGTTTGTAA
Found at i:7763035 original size:24 final size:25
Alignment explanation
Indices: 7762959--7763028 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
7762949 AGGAAGTGCT
* * *
7762959 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
7762984 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
7763009 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCCAGTT
7763029 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:7763041 original size:24 final size:25
Alignment explanation
Indices: 7762959--7763041 Score: 84
Period size: 25 Copynumber: 3.4 Consensus size: 25
7762949 AGGAAGTGCT
* *
7762959 AAAAG-GGCTATGCCCCAGTTTACC
1 AAAAGAGGCTTTGCCCCAGTTTATC
7762983 GAAAAG-GGCTTTGCCCCAGTTTATC
1 -AAAAGAGGCTTTGCCCCAGTTTATC
* *
7763008 AAAA-AGGGCTTTGCCCTAG-TTATT
1 AAAAGA-GGCTTTGCCCCAGTTTATC
7763032 AAAAGAGGCT
1 AAAAGAGGCT
7763042 AGGCCTCCAG
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
24 16 0.31
25 35 0.69
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCCAGTTTATC
Found at i:7763297 original size:31 final size:31
Alignment explanation
Indices: 7763248--7763330 Score: 152
Period size: 31 Copynumber: 2.7 Consensus size: 31
7763238 AGCTTACAGT
7763248 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
7763278 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
7763309 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
7763331 TCGAGAGTGA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
30 16 0.31
31 36 0.69
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:7763386 original size:29 final size:28
Alignment explanation
Indices: 7763344--7763398 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
7763334 AGAGTGAATT
* *
7763344 AGGGCTTAGGCCCATACTGCTACTGTTTA
1 AGGGCTAAGGCCCAGACTG-TACTGTTTA
7763373 AGGGCTAAGGCCCAGACTGTACTGTT
1 AGGGCTAAGGCCCAGACTGTACTGTT
7763399 ACTGAATAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (28 bp):
AGGGCTAAGGCCCAGACTGTACTGTTTA
Found at i:7764434 original size:55 final size:56
Alignment explanation
Indices: 7764346--7764452 Score: 180
Period size: 55 Copynumber: 1.9 Consensus size: 56
7764336 TGTTGTTTTC
* *
7764346 TTTTAAACGGGGGGAGGGGACCAAAATGTACCGTTTTGGTCCCTATAAAAGATAAA
1 TTTTAAACGGGGGGAGGGGACCAAAACGCACCGTTTTGGTCCCTATAAAAGATAAA
*
7764402 TTTTAAAC-GGGGGAGGTGACCAAAACGCACCGTTTTGGTCCCTATAAAAGA
1 TTTTAAACGGGGGGAGGGGACCAAAACGCACCGTTTTGGTCCCTATAAAAGA
7764453 AAAAAAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
55 40 0.83
56 8 0.17
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (56 bp):
TTTTAAACGGGGGGAGGGGACCAAAACGCACCGTTTTGGTCCCTATAAAAGATAAA
Found at i:7764600 original size:104 final size:102
Alignment explanation
Indices: 7764403--7764610 Score: 267
Period size: 104 Copynumber: 2.0 Consensus size: 102
7764393 AAAGATAAAT
*
7764403 TTTAAACGGGGGAGGTGACCAAAACGCACCGTTTTGGTCCCTATAAAAGAAAAAAAAAATTTTAA
1 TTTAAACGGGGGAGGGGACCAAAACGCACCGTTTTGGTCCCTATAAAAG--AAAAAAAATTTTAA
* *
7764468 AAAAATTATTTGAGCGGAGAAAAGAAAAAAAA-AGGGAG
64 AAAAATCATTTGAACGGAGAAAAGAAAAAAAAGAGGGAG
* * * **
7764506 TTTAAACGGGGGGAGGGGACCAAAATGTACCGTTTTGGTCCCTATAAAAG-ATAAATTTTTTAAA
1 TTTAAAC-GGGGGAGGGGACCAAAACGCACCGTTTTGGTCCCTATAAAAGAAAAAAAATTTT-AA
*
7764570 AAAAATCATTTAGAACTGAGAAAAGAAAAAAAAAGAGGGAG
64 AAAAATCATTT-GAACGGAGAAAAG-AAAAAAAAGAGGGAG
7764611 AGAAGAGGGA
Statistics
Matches: 91, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
101 8 0.09
102 12 0.13
103 18 0.20
104 47 0.52
105 6 0.07
ACGTcount: A:0.46, C:0.10, G:0.23, T:0.21
Consensus pattern (102 bp):
TTTAAACGGGGGAGGGGACCAAAACGCACCGTTTTGGTCCCTATAAAAGAAAAAAAATTTTAAAA
AAATCATTTGAACGGAGAAAAGAAAAAAAAGAGGGAG
Found at i:7766640 original size:43 final size:43
Alignment explanation
Indices: 7766547--7766716 Score: 156
Period size: 43 Copynumber: 4.0 Consensus size: 43
7766537 ATATAGCTCG
* * ** *
7766547 TACAATGCCATAT-T-CCAGATATGGTCTTACATGTTATCTCAA
1 TACAATGCCA-ATGTCCCAGACATGGTCTTACACGAAATCACAA
7766589 -ATCAATGCCAATAG-CCCAG-CTATGGTCTTACACGAAATCAC-A
1 TA-CAATGCCAAT-GTCCCAGAC-ATGGTCTTACACGAAATCACAA
* *
7766631 TAACGATGCCAATGTCCCAGACATGGTCTTACAC-ATAATCAGAA
1 T-ACAATGCCAATGTCCCAGACATGGTCTTACACGA-AATCACAA
* *
7766675 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGAAATCACA
7766717 GCTCAGTAAT
Statistics
Matches: 105, Mismatches: 11, Indels: 23
0.76 0.08 0.17
Matches are distributed among these distances:
41 3 0.03
42 11 0.10
43 87 0.83
44 4 0.04
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.26
Consensus pattern (43 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAA
Found at i:7768184 original size:35 final size:35
Alignment explanation
Indices: 7768130--7768464 Score: 323
Period size: 35 Copynumber: 9.6 Consensus size: 35
7768120 TCCTCATTGA
*
7768130 AATACCATACCTACGTTTCACAACTCAGTATGGAA
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
* * ** * *
7768165 AACACCATACCTACTTTTCA-TGCTCGGTATGGAA
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
** * * *
7768199 AATACCATACCTATATTTCATAATTCAGTATGGAC
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
* * * * * * *
7768234 GATGCCATACCTACGTATCATAGCTCAATATGGAC
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
* * * * *
7768269 GACACCATACCTACGTTTCATAGCTCGGTATGGA-
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
** *
7768303 AATACCATACCTACGTTTCACAGTTCAGTATGGTT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
* * *
7768338 AATACCATACCTATGTTTCACAACTCGGTATGGTT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
* *
7768373 AATACTATACCTACGTTTCACAACTCAGTATAGAT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
* *
7768408 GATACCATACCTACGTTTCACAACTCGGTATGGAT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
* * *
7768443 GATACCATACCAACATTTCACA
1 AATACCATACCTACGTTTCACA
7768465 CTTTGCCATG
Statistics
Matches: 251, Mismatches: 47, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
34 56 0.22
35 195 0.78
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (35 bp):
AATACCATACCTACGTTTCACAACTCAGTATGGAT
Found at i:7768314 original size:104 final size:104
Alignment explanation
Indices: 7768134--7768453 Score: 309
Period size: 104 Copynumber: 3.1 Consensus size: 104
7768124 CATTGAAATA
* * *
7768134 CCATACCTACGTTTCACAACTCAGTATGGAAAACACCATACCTACTTTTCATGCTCGGTATGGAA
1 CCATACCTACGTATCACAACTCAATATGGAAAACACCATACCTACGTTTCATGCTCGGTATGGAA
* *
7768199 AATACCATACCTATATTTCATAATTCAGTATGGACGATG
66 AATACCATACCTACATTTCACAATTCAGTATGGACGATG
* * **
7768238 CCATACCTACGTATCATAGCTCAATATGGACGACACCATACCTACGTTTCATAGCTCGGTATGG-
1 CCATACCTACGTATCACAACTCAATATGGAAAACACCATACCTACGTTTCAT-GCTCGGTATGGA
* * *** *
7768302 AAATACCATACCTACGTTTCACAGTTCAGTATGGTTAATA
65 AAATACCATACCTACATTTCACAATTCAGTATGGACGATG
* * ** ** * * ** * *
7768342 CCATACCTATGTTTCACAACTCGGTATGGTTAATACTATACCTACGTTTCACAACTCAGTATAGA
1 CCATACCTACGTATCACAACTCAATATGGAAAACACCATACCTACGTTTCA-TGCTCGGTATGGA
** * * * * *
7768407 TGATACCATACCTACGTTTCACAACTCGGTATGGATGATA
65 AAATACCATACCTACATTTCACAATTCAGTATGGACGATG
7768447 CCATACC
1 CCATACC
7768454 AACATTTCAC
Statistics
Matches: 176, Mismatches: 37, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
104 125 0.71
105 51 0.29
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (104 bp):
CCATACCTACGTATCACAACTCAATATGGAAAACACCATACCTACGTTTCATGCTCGGTATGGAA
AATACCATACCTACATTTCACAATTCAGTATGGACGATG
Found at i:7768349 original size:139 final size:139
Alignment explanation
Indices: 7768133--7768464 Score: 378
Period size: 139 Copynumber: 2.4 Consensus size: 139
7768123 TCATTGAAAT
* * * * *
7768133 ACCATACCTACGTTTCACAACTCAGTATGGAAAACACCATACCTACTTTTCA-TGCTCGGTATGG
1 ACCATACCTACGTTTCACAACTCGGTATGG-AAATACCATACCTACATTTCACAGCTCAGTATGG
* * * * * *
7768197 AAAATACCATACCTATATTTCATAATTCAGTATGGACGATGCCATACCTACGTATCATAGCTCAA
65 AAAATACCATACCTATATTTCACAACTCAGTATGGACAATACCATACCTACGTATCACAACTCAA
*
7768262 TATGGACGAC
130 TATAGACGAC
* * * * *
7768272 ACCATACCTACGTTTCATAGCTCGGTATGGAAATACCATACCTACGTTTCACAGTTCAGTATGGT
1 ACCATACCTACGTTTCACAACTCGGTATGGAAATACCATACCTACATTTCACAGCTCAGTATGGA
* * * ** * * *
7768337 TAATACCATACCTATGTTTCACAACTCGGTATGGTTAATACTATACCTACGTTTCACAACTCAGT
66 AAATACCATACCTATATTTCACAACTCAGTATGGACAATACCATACCTACGTATCACAACTCAAT
* *
7768402 ATAGATGAT
131 ATAGACGAC
* *
7768411 ACCATACCTACGTTTCACAACTCGGTATGGATGATACCATACCAACATTTCACA
1 ACCATACCTACGTTTCACAACTCGGTATGGA-AATACCATACCTACATTTCACA
7768465 CTTTGCCATG
Statistics
Matches: 160, Mismatches: 31, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
138 19 0.12
139 122 0.76
140 19 0.12
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (139 bp):
ACCATACCTACGTTTCACAACTCGGTATGGAAATACCATACCTACATTTCACAGCTCAGTATGGA
AAATACCATACCTATATTTCACAACTCAGTATGGACAATACCATACCTACGTATCACAACTCAAT
ATAGACGAC
Found at i:7768774 original size:35 final size:35
Alignment explanation
Indices: 7768728--7768800 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
7768718 AACATTATAT
7768728 CATTTCTAATTCAACACTTATTGATTATAATCGGG
1 CATTTCTAATTCAACACTTATTGATTATAATCGGG
7768763 CATTTCTAATTCAACACTTATTGATTATAATCGGG
1 CATTTCTAATTCAACACTTATTGATTATAATCGGG
7768798 CAT
1 CAT
7768801 GTGATCAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.40
Consensus pattern (35 bp):
CATTTCTAATTCAACACTTATTGATTATAATCGGG
Found at i:7770325 original size:23 final size:23
Alignment explanation
Indices: 7770295--7770340 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
7770285 TTTATAAAGA
7770295 AAGAAAGAAAGGAAAAATAGGGT
1 AAGAAAGAAAGGAAAAATAGGGT
7770318 AAGAAAGAAAGGAAAAATAGGGT
1 AAGAAAGAAAGGAAAAATAGGGT
7770341 TTTAAGGTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.30, T:0.09
Consensus pattern (23 bp):
AAGAAAGAAAGGAAAAATAGGGT
Found at i:7774481 original size:27 final size:27
Alignment explanation
Indices: 7774409--7774508 Score: 101
Period size: 27 Copynumber: 3.6 Consensus size: 27
7774399 TATTTAGTGC
* *
7774409 TTAAAAAGTATGTGTTATATTTTTATAA
1 TTAAAAA-TATGTATTACATTTTTATAA
* *
7774437 TTAAAAAAATTATTTATTACTTTTTTATAA
1 TT--AAAAA-TATGTATTACATTTTTATAA
* *
7774467 TTAAAAATGTGTATTGCATTTTTATAA
1 TTAAAAATATGTATTACATTTTTATAA
*
7774494 TTAAATATATGTATT
1 TTAAAAATATGTATT
7774509 TAAAAAATAT
Statistics
Matches: 59, Mismatches: 11, Indels: 5
0.79 0.15 0.07
Matches are distributed among these distances:
27 29 0.49
28 7 0.12
30 23 0.39
ACGTcount: A:0.40, C:0.02, G:0.07, T:0.51
Consensus pattern (27 bp):
TTAAAAATATGTATTACATTTTTATAA
Found at i:7775964 original size:698 final size:698
Alignment explanation
Indices: 7774607--7776191 Score: 3145
Period size: 698 Copynumber: 2.3 Consensus size: 698
7774597 TTGATAAAGA
* *
7774607 TTTTGTATAGTTTTAATT-CTGGTTAATAATTAAAAAATTGTTTATAACATTTAATGTATAAAAT
1 TTTTGTATAATTTTAATTCCTAGTTAATAATTAAAAAATTGTTTATAACATTTAATGTATAAAAT
7774671 TCTGGTTAACTATTCATTTGTCATCATTTTAAATATATCACTTAAGATTATTTCTAAAGATTTTG
66 TCTGGTTAACTATTCATTTGTCATCATTTTAAATATATCACTTAAGATTATTTCTAAAGATTTTG
7774736 TAATATATACATCTTATGTATATATTATATGACTAATTTTCTTATCCGTGCAATGCACGGGTTAA
131 TAATATATACATCTTATGTATATATTATATGACTAATTTTCTTATCCGTGCAATGCACGGGTTAA
7774801 TTGAGTGTATTAATTTAACTTAATTATATTATTTGTTAAAATTTAGAACAAAATTTGAATATATT
196 TTGAGTGTATTAATTTAACTTAATTATATTATTTGTTAAAATTTAGAACAAAATTTGAATATATT
7774866 GAAAAATTAAAAGATGACAATAATTGTACACCATAAATTATATATATGTATATATATATATATGA
261 GAAAAATTAAAAGATGACAATAATTGTACACCATAAATTATATATATGTATATATATATATATGA
7774931 AGTTATATACTAATTTTATTCAACAATTTTTTTAAATATTTACCTTTTAATACTAATTTAAATGT
326 AGTTATATACTAATTTTATTCAACAATTTTTTTAAATATTTACCTTTTAATACTAATTTAAATGT
7774996 AAAAATTAAACATTAATTATAAATAAAAAGACAATAAAGTAGGATATAATAAATTTAAATATTTT
391 AAAAATTAAACATTAATTATAAATAAAAAGACAATAAAGTAGGATATAATAAATTTAAATATTTT
7775061 TAAAATAATTTAATTATTATTTCTTGAATGTTCAAAATAATTTAAACATTAACATATTTTAAAAT
456 TAAAATAATTTAATTATTATTTCTTGAATGTTCAAAATAATTTAAACATTAACATATTTTAAAAT
7775126 TAGATAATAAGTTTTTAGTATTTTTAAACAATTTGTTTTTTAAAATTATTTAATTAGGTGTTACA
521 TAGATAATAAGTTTTTAGTATTTTTAAACAATTTGTTTTTTAAAATTATTTAATTAGGTGTTACA
7775191 TTTTTATAATAAAAAATGCATATTGCATTATTATAATTAAAAATATGCATTTCAAAAAAGATATT
586 TTTTTATAATAAAAAATGCATATTGCATTATTATAATTAAAAATATGCATTTCAAAAAAGATATT
7775256 GTCGGTCTTTTTCAATGTTTTTTTTTTCAAAATATATCATAAAATGGG
651 GTCGGTCTTTTTCAATGTTTTTTTTTTCAAAATATATCATAAAATGGG
7775304 TTTTGTATAATTTTAATTCCTAGTTAATAATTAAAAAATTGTTTATAACATTTAATGTATAAAAT
1 TTTTGTATAATTTTAATTCCTAGTTAATAATTAAAAAATTGTTTATAACATTTAATGTATAAAAT
7775369 TCTGGTTAACTATTCATTTGTCATCATTTTAAATATATCACTTAAGATTATTTCTAAAGATTTTG
66 TCTGGTTAACTATTCATTTGTCATCATTTTAAATATATCACTTAAGATTATTTCTAAAGATTTTG
7775434 TAATATATACATCTTATGTATATATTATATGACTAATTTTCTTATCCGTGCAATGCACGGGTTAA
131 TAATATATACATCTTATGTATATATTATATGACTAATTTTCTTATCCGTGCAATGCACGGGTTAA
7775499 TTGAGTGTATTAATTTAACTTAATTATATTATTTGTTAAAATTTAGAACAAAATTTGAATATATT
196 TTGAGTGTATTAATTTAACTTAATTATATTATTTGTTAAAATTTAGAACAAAATTTGAATATATT
7775564 GAAAAATTAAAAGATGACAATAATTGTACACCATAAATTATATATATGTATATATATATATATGA
261 GAAAAATTAAAAGATGACAATAATTGTACACCATAAATTATATATATGTATATATATATATATGA
7775629 AGTTATATACTAATTTTATTCAACAATTTTTTTAAATATTTACCTTTTAATACTAATTTAAATGT
326 AGTTATATACTAATTTTATTCAACAATTTTTTTAAATATTTACCTTTTAATACTAATTTAAATGT
7775694 AAAAATTAAACATTAATTATAAATAAAAAGACAATAAAGTAGGATATAATAAATTTAAATATTTT
391 AAAAATTAAACATTAATTATAAATAAAAAGACAATAAAGTAGGATATAATAAATTTAAATATTTT
7775759 TAAAATAATTTAATTATTATTTCTTGAATGTTCAAAATAATTTAAACATTAACATATTTTAAAAT
456 TAAAATAATTTAATTATTATTTCTTGAATGTTCAAAATAATTTAAACATTAACATATTTTAAAAT
7775824 TAGATAATAAGTTTTTAGTATTTTTAAACAATTTGTTTTTTAAAATTATTTAATTAGGTGTTACA
521 TAGATAATAAGTTTTTAGTATTTTTAAACAATTTGTTTTTTAAAATTATTTAATTAGGTGTTACA
7775889 TTTTTATAATAAAAAATGCATATTGCATTATTATAATTAAAAATATGCATTTCAAAAAAGATATT
586 TTTTTATAATAAAAAATGCATATTGCATTATTATAATTAAAAATATGCATTTCAAAAAAGATATT
7775954 GTCGGTCTTTTTCAATGTTTTTTTTTTCAAAATATATCATAAAATGGG
651 GTCGGTCTTTTTCAATGTTTTTTTTTTCAAAATATATCATAAAATGGG
7776002 TTTTGTATAATTTTAATTCCTAGTTAATAATTAAAAAATTGTTTATAACATTTAATGTATAAAAT
1 TTTTGTATAATTTTAATTCCTAGTTAATAATTAAAAAATTGTTTATAACATTTAATGTATAAAAT
7776067 TCTGGTTAACTATTCATTTGTCATCATTTTAAATATATCACTTAAGATTATTTCTAAAGATTTTG
66 TCTGGTTAACTATTCATTTGTCATCATTTTAAATATATCACTTAAGATTATTTCTAAAGATTTTG
7776132 TAATATATACATCTTATGTATATATTATATGACTAATTTTCTTATCCGTGCAATGCACGG
131 TAATATATACATCTTATGTATATATTATATGACTAATTTTCTTATCCGTGCAATGCACGG
7776192 CGTCCAGGTC
Statistics
Matches: 885, Mismatches: 2, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
697 17 0.02
698 868 0.98
ACGTcount: A:0.40, C:0.07, G:0.08, T:0.44
Consensus pattern (698 bp):
TTTTGTATAATTTTAATTCCTAGTTAATAATTAAAAAATTGTTTATAACATTTAATGTATAAAAT
TCTGGTTAACTATTCATTTGTCATCATTTTAAATATATCACTTAAGATTATTTCTAAAGATTTTG
TAATATATACATCTTATGTATATATTATATGACTAATTTTCTTATCCGTGCAATGCACGGGTTAA
TTGAGTGTATTAATTTAACTTAATTATATTATTTGTTAAAATTTAGAACAAAATTTGAATATATT
GAAAAATTAAAAGATGACAATAATTGTACACCATAAATTATATATATGTATATATATATATATGA
AGTTATATACTAATTTTATTCAACAATTTTTTTAAATATTTACCTTTTAATACTAATTTAAATGT
AAAAATTAAACATTAATTATAAATAAAAAGACAATAAAGTAGGATATAATAAATTTAAATATTTT
TAAAATAATTTAATTATTATTTCTTGAATGTTCAAAATAATTTAAACATTAACATATTTTAAAAT
TAGATAATAAGTTTTTAGTATTTTTAAACAATTTGTTTTTTAAAATTATTTAATTAGGTGTTACA
TTTTTATAATAAAAAATGCATATTGCATTATTATAATTAAAAATATGCATTTCAAAAAAGATATT
GTCGGTCTTTTTCAATGTTTTTTTTTTCAAAATATATCATAAAATGGG
Found at i:7777002 original size:13 final size:13
Alignment explanation
Indices: 7776984--7777035 Score: 50
Period size: 13 Copynumber: 3.7 Consensus size: 13
7776974 GTCAGATCTG
7776984 CCCACGGCCTGGC
1 CCCACGGCCTGGC
7776997 CCCACGGCCATGGGAAC
1 CCCACGGCC-T-GG--C
*
7777014 CCCACGGGCTGGC
1 CCCACGGCCTGGC
*
7777027 CACACGGCC
1 CCCACGGCC
7777036 ATGTCCTAGG
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
13 17 0.53
14 1 0.03
15 4 0.12
16 1 0.03
17 9 0.28
ACGTcount: A:0.15, C:0.48, G:0.31, T:0.06
Consensus pattern (13 bp):
CCCACGGCCTGGC
Found at i:7782226 original size:9 final size:9
Alignment explanation
Indices: 7782200--7782257 Score: 66
Period size: 9 Copynumber: 6.6 Consensus size: 9
7782190 ATGTGGCAAA
7782200 AAAAATTAT
1 AAAAATTAT
7782209 AAAAA--AT
1 AAAAATTAT
7782216 AAAAATTAT
1 AAAAATTAT
*
7782225 AAAAATAGAT
1 AAAAAT-TAT
*
7782235 AAAAATTGT
1 AAAAATTAT
*
7782244 AAAAAATAT
1 AAAAATTAT
7782253 AAAAA
1 AAAAA
7782258 AGTGTAAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
7 7 0.17
9 26 0.63
10 8 0.20
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.24
Consensus pattern (9 bp):
AAAAATTAT
Found at i:7782228 original size:15 final size:16
Alignment explanation
Indices: 7782200--7782256 Score: 69
Period size: 16 Copynumber: 3.3 Consensus size: 16
7782190 ATGTGGCAAA
7782200 AAAAATTATAAAAAAT
1 AAAAATTATAAAAAAT
7782216 AAAAATTATAAAAATAGAT
1 AAAAATTAT-AAAA-A-AT
*
7782235 AAAAATTGTAAAAAAT
1 AAAAATTATAAAAAAT
7782251 ATAAAA
1 A-AAAA
7782257 AAGTGTAAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
16 12 0.33
17 9 0.25
18 5 0.14
19 10 0.28
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.25
Consensus pattern (16 bp):
AAAAATTATAAAAAAT
Found at i:7782258 original size:9 final size:9
Alignment explanation
Indices: 7782199--7782307 Score: 55
Period size: 9 Copynumber: 12.0 Consensus size: 9
7782189 CATGTGGCAA
7782199 AAAAAAT-T
1 AAAAAATAT
7782207 ATAAAAA-AT
1 A-AAAAATAT
*
7782216 AAAAATTAT
1 AAAAAATAT
*
7782225 AAAAATAGAT
1 AAAAA-ATAT
* *
7782235 AAAAATTGT
1 AAAAAATAT
7782244 AAAAAATAT
1 AAAAAATAT
*
7782253 AAAAAAGTGT
1 AAAAAA-TAT
***
7782263 AAATTTTTAT
1 AAA-AAATAT
*
7782273 AAAAAACAT
1 AAAAAATAT
7782282 --AAAATAT
1 AAAAAATAT
*
7782289 AGAAAATAT
1 AAAAAATAT
7782298 ATAAAAATAT
1 A-AAAAATAT
7782308 GGAAAAACAA
Statistics
Matches: 73, Mismatches: 19, Indels: 16
0.68 0.18 0.15
Matches are distributed among these distances:
7 6 0.08
8 5 0.07
9 38 0.52
10 24 0.33
ACGTcount: A:0.67, C:0.01, G:0.05, T:0.28
Consensus pattern (9 bp):
AAAAAATAT
Found at i:7782258 original size:19 final size:18
Alignment explanation
Indices: 7782199--7782307 Score: 73
Period size: 19 Copynumber: 6.0 Consensus size: 18
7782189 CATGTGGCAA
7782199 AAAAAATTATAAAAA-AT
1 AAAAAATTATAAAAATAT
*
7782216 -AAAAATTATAAAAATAG
1 AAAAAATTATAAAAATAT
*
7782233 ATAAAAATTGTAAAAAATAT
1 A-AAAAATTAT-AAAAATAT
* * **
7782253 AAAAAAGTGTAAATTTTTAT
1 AAAAAATTATAAA--AATAT
*
7782273 AAAAAA-CAT-AAAATAT
1 AAAAAATTATAAAAATAT
*
7782289 AGAAAATATATAAAAATAT
1 AAAAAAT-TATAAAAATAT
7782308 GGAAAAACAA
Statistics
Matches: 71, Mismatches: 12, Indels: 16
0.72 0.12 0.16
Matches are distributed among these distances:
16 22 0.31
17 1 0.01
18 7 0.10
19 24 0.34
20 17 0.24
ACGTcount: A:0.67, C:0.01, G:0.05, T:0.28
Consensus pattern (18 bp):
AAAAAATTATAAAAATAT
Found at i:7786967 original size:11 final size:11
Alignment explanation
Indices: 7786945--7786993 Score: 62
Period size: 11 Copynumber: 4.5 Consensus size: 11
7786935 TGTTTTGATG
*
7786945 TTATTTTGCTA
1 TTATTTTACTA
7786956 TTATTTTACTA
1 TTATTTTACTA
*
7786967 TTATATTACTA
1 TTATTTTACTA
* *
7786978 TTATTCTATTA
1 TTATTTTACTA
7786989 TTATT
1 TTATT
7786994 GTTTGGGAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 33 1.00
ACGTcount: A:0.27, C:0.08, G:0.02, T:0.63
Consensus pattern (11 bp):
TTATTTTACTA
Found at i:7790387 original size:16 final size:16
Alignment explanation
Indices: 7790366--7790436 Score: 97
Period size: 16 Copynumber: 4.4 Consensus size: 16
7790356 GTTTGGTTCA
*
7790366 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
*
7790382 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
* *
7790398 TTGTAATGGAATATAG
1 CTGTAATGGAATAGAG
*
7790414 TTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
7790430 CTGTAAT
1 CTGTAAT
7790437 CAGTAATTCA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.35, C:0.04, G:0.28, T:0.32
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:7790502 original size:44 final size:46
Alignment explanation
Indices: 7790422--7790510 Score: 139
Period size: 44 Copynumber: 2.0 Consensus size: 46
7790412 AGTTGTAATG
7790422 GAATAGAGCTGTAATCAGTAATTCAATTGTTTGGTTGAATGGAATT
1 GAATAGAGCTGTAATCAGTAATTCAATTGTTTGGTTGAATGGAATT
*
7790468 GAATAGAGCTGTAAT-AG-AATTC-TTGTGTTTGGTTGAATGGAAT
1 GAATAGAGCTGTAATCAGTAATTCAAT-TGTTTGGTTGAATGGAAT
7790511 AGATGTTGTA
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
43 1 0.02
44 23 0.56
45 2 0.05
46 15 0.37
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.37
Consensus pattern (46 bp):
GAATAGAGCTGTAATCAGTAATTCAATTGTTTGGTTGAATGGAATT
Found at i:7790511 original size:39 final size:40
Alignment explanation
Indices: 7790413--7790526 Score: 115
Period size: 44 Copynumber: 2.7 Consensus size: 40
7790403 ATGGAATATA
7790413 GTTGTAATGGAATAGAGCTGTAATCAGTAATTCAATTGTTTG
1 GTTG-AATGGAATAGAGCTGTAAT-AGTAATTCAATTGTTTG
*
7790455 GTTGAATGGAATTGAATAGAGCTGTAATAG-AATTC-TTGTGTTTG
1 GTTGAAT-G----GAATAGAGCTGTAATAGTAATTCAAT-TGTTTG
*
7790499 GTTGAATGGAATAGATGTTGTAATAGTA
1 GTTGAATGGAATAGA-GCTGTAATAGTA
7790527 TAAGGAAAAA
Statistics
Matches: 62, Mismatches: 2, Indels: 17
0.77 0.02 0.21
Matches are distributed among these distances:
39 7 0.11
40 9 0.15
41 4 0.06
42 5 0.08
43 2 0.03
44 18 0.29
45 2 0.03
46 15 0.24
ACGTcount: A:0.32, C:0.04, G:0.26, T:0.38
Consensus pattern (40 bp):
GTTGAATGGAATAGAGCTGTAATAGTAATTCAATTGTTTG
Found at i:7790612 original size:25 final size:26
Alignment explanation
Indices: 7790583--7790633 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
7790573 GTAAATAGAT
*
7790583 GATTATTGTT-ATTAAATTTTAATAA
1 GATTATTGTTCAATAAATTTTAATAA
*
7790608 GATTATTGTTCAATATATTTTAATAA
1 GATTATTGTTCAATAAATTTTAATAA
7790634 AAATAAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.39, C:0.02, G:0.08, T:0.51
Consensus pattern (26 bp):
GATTATTGTTCAATAAATTTTAATAA
Found at i:7790712 original size:12 final size:11
Alignment explanation
Indices: 7790685--7790759 Score: 52
Period size: 12 Copynumber: 6.8 Consensus size: 11
7790675 TATTAAATAC
7790685 AATTTAATAA-
1 AATTTAATAAT
7790695 AA--TAATATAT
1 AATTTAATA-AT
*
7790705 AATTTAATAAC
1 AATTTAATAAT
*
7790716 ATTATTAAT-AT
1 AAT-TTAATAAT
7790727 AATTATTAATAAT
1 AA-T-TTAATAAT
7790740 -ATTTAATAAT
1 AATTTAATAAT
7790750 AATTTTAATA
1 AA-TTTAATA
7790760 TAACATTATT
Statistics
Matches: 52, Mismatches: 4, Indels: 16
0.72 0.06 0.22
Matches are distributed among these distances:
8 5 0.10
9 1 0.02
10 12 0.23
11 7 0.13
12 25 0.48
13 2 0.04
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.45
Consensus pattern (11 bp):
AATTTAATAAT
Found at i:7790751 original size:13 final size:12
Alignment explanation
Indices: 7790697--7790759 Score: 55
Period size: 12 Copynumber: 5.4 Consensus size: 12
7790687 TTTAATAAAA
7790697 TAATATATAA-TT
1 TAATA-ATAATTT
*
7790709 TAATAA-CATTAT
1 TAATAATAATT-T
7790721 TAAT-ATAATTAT
1 TAATAATAATT-T
7790733 TAATAAT-A-TT
1 TAATAATAATTT
7790743 TAATAATAATTT
1 TAATAATAATTT
7790755 TAATA
1 TAATA
7790760 TAACATTATT
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
10 9 0.21
11 5 0.12
12 27 0.63
13 2 0.05
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48
Consensus pattern (12 bp):
TAATAATAATTT
Found at i:7793310 original size:39 final size:39
Alignment explanation
Indices: 7793267--7793341 Score: 150
Period size: 39 Copynumber: 1.9 Consensus size: 39
7793257 CATCAAGTAA
7793267 AGAGAGATCAAATTATAGCATACTAGACTCAGTTTTTAC
1 AGAGAGATCAAATTATAGCATACTAGACTCAGTTTTTAC
7793306 AGAGAGATCAAATTATAGCATACTAGACTCAGTTTT
1 AGAGAGATCAAATTATAGCATACTAGACTCAGTTTT
7793342 GCATCGAAGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.31
Consensus pattern (39 bp):
AGAGAGATCAAATTATAGCATACTAGACTCAGTTTTTAC
Found at i:7816244 original size:81 final size:80
Alignment explanation
Indices: 7816109--7816270 Score: 236
Period size: 81 Copynumber: 2.0 Consensus size: 80
7816099 CATTGGACCA
* * *
7816109 TCACTTTTTTGCAAACCTTTTCTGCTCTTCAATGGTGACACCAATCTGCTAGCCAAAT-GGGAAG
1 TCACTTCTTTGCAAACCTTTTCTGCTCTTCAATGGTGAAACCAATCTACTAGCC-AATCGGGAAG
*
7816173 GTGAAAATGATCTACCG
65 GCGAAAATGATCT-CCG
** *
7816190 TCACTTCTTTGCAAAGTTTTTCTGCTCTTCAATGGTGAAACCAATCTATTAGCCAATCGGGAAGG
1 TCACTTCTTTGCAAACCTTTTCTGCTCTTCAATGGTGAAACCAATCTACTAGCCAATCGGGAAGG
7816255 CGAAAATGATCTCCG
66 CGAAAATGATCTCCG
7816270 T
1 T
7816271 AGCTTCGAAG
Statistics
Matches: 73, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
80 7 0.10
81 66 0.90
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (80 bp):
TCACTTCTTTGCAAACCTTTTCTGCTCTTCAATGGTGAAACCAATCTACTAGCCAATCGGGAAGG
CGAAAATGATCTCCG
Found at i:7818849 original size:20 final size:21
Alignment explanation
Indices: 7818824--7818878 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
7818814 GAACCCTAAA
*
7818824 TGAGTTTAGGGTTC-GAGGTT
1 TGAGTTTAGGGTTCTGAAGTT
*
7818844 TGAGTTT-GGGATCTGAAGTT
1 TGAGTTTAGGGTTCTGAAGTT
*
7818864 TGATATTTAGGGTTC
1 TGA-GTTTAGGGTTC
7818879 AAGATTTTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 5 0.18
20 15 0.54
21 3 0.11
22 5 0.18
ACGTcount: A:0.18, C:0.05, G:0.35, T:0.42
Consensus pattern (21 bp):
TGAGTTTAGGGTTCTGAAGTT
Found at i:7833387 original size:4 final size:4
Alignment explanation
Indices: 7833380--7833413 Score: 59
Period size: 4 Copynumber: 8.5 Consensus size: 4
7833370 ATGATCATTC
*
7833380 ATGT ATGT ATGT ATGT ATGT ATGT ATGC ATGT AT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT
7833414 ATCATATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.26, C:0.03, G:0.24, T:0.47
Consensus pattern (4 bp):
ATGT
Found at i:7840259 original size:30 final size:30
Alignment explanation
Indices: 7840224--7840298 Score: 123
Period size: 30 Copynumber: 2.5 Consensus size: 30
7840214 AAAAATGATA
7840224 ACTGAATTTTAAAACATTACCATTTAAGTC
1 ACTGAATTTTAAAACATTACCATTTAAGTC
* *
7840254 ACTGAATTTAAAAACATTATCATTTAAGTC
1 ACTGAATTTTAAAACATTACCATTTAAGTC
7840284 ACTGAATTATTAAAA
1 ACTGAATT-TTAAAA
7840299 TCATAAGTGT
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 36 0.88
31 5 0.12
ACGTcount: A:0.44, C:0.13, G:0.07, T:0.36
Consensus pattern (30 bp):
ACTGAATTTTAAAACATTACCATTTAAGTC
Found at i:7841032 original size:22 final size:22
Alignment explanation
Indices: 7840969--7841034 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
7840959 TAAATCTCTC
7840969 TAAAATAGTAACAAAATTAATAA
1 TAAAATAGTAACAAAA-TAATAA
** * *
7840992 TAAAATAAAAACTATATAATAA
1 TAAAATAGTAACAAAATAATAA
* *
7841014 TAAAATAGTAGCAACATAATA
1 TAAAATAGTAACAAAATAATA
7841035 GTGAAATGGT
Statistics
Matches: 34, Mismatches: 9, Indels: 1
0.77 0.20 0.02
Matches are distributed among these distances:
22 22 0.65
23 12 0.35
ACGTcount: A:0.64, C:0.06, G:0.05, T:0.26
Consensus pattern (22 bp):
TAAAATAGTAACAAAATAATAA
Found at i:7872043 original size:24 final size:24
Alignment explanation
Indices: 7872016--7872061 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
7872006 ATTCATGTCA
7872016 CAAAATATACCAATGCATCATCAT
1 CAAAATATACCAATGCATCATCAT
* *
7872040 CAAAATATACTAATTCATCATC
1 CAAAATATACCAATGCATCATC
7872062 CCTATACCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.46, C:0.24, G:0.02, T:0.28
Consensus pattern (24 bp):
CAAAATATACCAATGCATCATCAT
Found at i:7873079 original size:42 final size:42
Alignment explanation
Indices: 7873070--7873149 Score: 142
Period size: 42 Copynumber: 1.9 Consensus size: 42
7873060 GTTGTACATG
7873070 AATCTTATATCGATGCCAATGTCCCAGACATGGGCTTACACA
1 AATCTTATATCGATGCCAATGTCCCAGACATGGGCTTACACA
* *
7873112 AATCTCATATCGATGCCAATGTCCCAGACATGGTCTTA
1 AATCTTATATCGATGCCAATGTCCCAGACATGGGCTTA
7873150 ATCTCATATC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (42 bp):
AATCTTATATCGATGCCAATGTCCCAGACATGGGCTTACACA
Found at i:7878577 original size:41 final size:41
Alignment explanation
Indices: 7878474--7878676 Score: 327
Period size: 41 Copynumber: 5.0 Consensus size: 41
7878464 GTAAAACACA
* * *
7878474 GAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAAT-A
1 GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCG
7878514 GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCG
1 GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCG
* *
7878555 GAGCAATAGCGGCTCTTCTGGTAAAACGCCGCTAAAAGTCG
1 GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCG
* *
7878596 GAGCAATAGCGGCGCTTCTGGTAAAACGCCACTAAAAGTCG
1 GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCG
*
7878637 GAGCAATAGCGGCGCTTTTAGTAAAACGCCGCTAAAAGTC
1 GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTC
7878677 ATATAACCCC
Statistics
Matches: 152, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
40 37 0.24
41 115 0.76
ACGTcount: A:0.32, C:0.22, G:0.27, T:0.20
Consensus pattern (41 bp):
GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCG
Found at i:7878758 original size:16 final size:17
Alignment explanation
Indices: 7878734--7878767 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
7878724 CTAAAATACT
*
7878734 AAACTCCTAAACCCTAA
1 AAACTCCTAAACACTAA
7878751 AAAC-CCTAAACACTAA
1 AAACTCCTAAACACTAA
7878767 A
1 A
7878768 CTATAACTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.53, C:0.32, G:0.00, T:0.15
Consensus pattern (17 bp):
AAACTCCTAAACACTAA
Found at i:7879260 original size:16 final size:16
Alignment explanation
Indices: 7879227--7879260 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7879217 ATACTGTGTT
* *
7879227 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
7879243 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
7879259 AA
1 AA
7879261 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:7882080 original size:21 final size:21
Alignment explanation
Indices: 7882054--7882094 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7882044 AGACGAGCAA
* *
7882054 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
7882075 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
7882095 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:7884032 original size:16 final size:16
Alignment explanation
Indices: 7883999--7884032 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7883989 GGAGATTGTT
* *
7883999 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
7884015 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
7884031 AA
1 AA
7884033 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:7884896 original size:7 final size:7
Alignment explanation
Indices: 7884886--7884965 Score: 56
Period size: 7 Copynumber: 11.3 Consensus size: 7
7884876 CATTAAACCG
7884886 AAATAAA
1 AAATAAA
7884893 AAAT--A
1 AAATAAA
*
7884898 AACTCAAA
1 AAAT-AAA
7884906 AAATAAA
1 AAATAAA
*
7884913 AATTAAA
1 AAATAAA
*
7884920 AAATTAA
1 AAATAAA
* *
7884927 AATTTAA
1 AAATAAA
7884934 AAATAAA
1 AAATAAA
*
7884941 AAATTTAA
1 AAA-TAAA
*
7884949 AATTAAA
1 AAATAAA
7884956 AAATTAAA
1 AAA-TAAA
7884964 AA
1 AA
7884966 CTTAAAAATT
Statistics
Matches: 56, Mismatches: 12, Indels: 9
0.73 0.16 0.12
Matches are distributed among these distances:
5 4 0.07
7 37 0.66
8 15 0.27
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (7 bp):
AAATAAA
Found at i:7884920 original size:14 final size:14
Alignment explanation
Indices: 7884889--7884980 Score: 78
Period size: 15 Copynumber: 6.4 Consensus size: 14
7884879 TAAACCGAAA
*
7884889 TAAAAAAT-AAACT
1 TAAAAAATAAAAAT
*
7884902 CAAAAAATAAAAAT
1 TAAAAAATAAAAAT
*
7884916 TAAAAAATTAAAAT
1 TAAAAAATAAAAAT
*
7884930 TTAAAAATAAAAAAT
1 TAAAAAAT-AAAAAT
* *
7884945 TTAAAATTAAAAAAT
1 TAAAAAAT-AAAAAT
*
7884960 TAAAAACTTAAAAAT
1 TAAAAA-ATAAAAAT
*
7884975 TTAAAA
1 TAAAAA
7884981 TTAATCAATA
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
13 7 0.10
14 23 0.34
15 35 0.52
16 2 0.03
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (14 bp):
TAAAAAATAAAAAT
Found at i:7884921 original size:8 final size:8
Alignment explanation
Indices: 7884910--7884980 Score: 78
Period size: 8 Copynumber: 9.4 Consensus size: 8
7884900 CTCAAAAAAT
7884910 AAAAATTA
1 AAAAATTA
7884918 AAAAATT-
1 AAAAATTA
*
7884925 -AAAATTT
1 AAAAATTA
7884932 AAAAA-TA
1 AAAAATTA
7884939 AAAAATT-
1 AAAAATTA
*
7884946 TAAAATTA
1 AAAAATTA
7884954 AAAAATTA
1 AAAAATTA
*
7884962 AAAACTTA
1 AAAAATTA
*
7884970 AAAATTTA
1 AAAAATTA
7884978 AAA
1 AAA
7884981 TTAATCAATA
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
6 6 0.11
7 12 0.22
8 36 0.67
ACGTcount: A:0.70, C:0.01, G:0.00, T:0.28
Consensus pattern (8 bp):
AAAAATTA
Found at i:7884921 original size:15 final size:15
Alignment explanation
Indices: 7884910--7884984 Score: 84
Period size: 15 Copynumber: 5.1 Consensus size: 15
7884900 CTCAAAAAAT
7884910 AAAAATTAAAAAATT-
1 AAAAATT-AAAAATTA
*
7884925 AAAATTTAAAAA-TA
1 AAAAATTAAAAATTA
*
7884939 AAAAATTTAAAATTA
1 AAAAATTAAAAATTA
7884954 AAAAATTAAAAACTT-
1 AAAAATTAAAAA-TTA
*
7884969 AAAAATTTAAAATTA
1 AAAAATTAAAAATTA
7884984 A
1 A
7884985 TCAATAGTGG
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
13 1 0.02
14 17 0.33
15 31 0.61
16 2 0.04
ACGTcount: A:0.69, C:0.01, G:0.00, T:0.29
Consensus pattern (15 bp):
AAAAATTAAAAATTA
Found at i:7884934 original size:22 final size:22
Alignment explanation
Indices: 7884909--7884984 Score: 102
Period size: 22 Copynumber: 3.5 Consensus size: 22
7884899 ACTCAAAAAA
7884909 TAAAAATTAAAAAATTAAAATT
1 TAAAAATTAAAAAATTAAAATT
7884931 TAAAAA-TAAAAAATTTAAAATT
1 TAAAAATTAAAAAA-TTAAAATT
* *
7884953 AAAAAATTAAAAACTTAAAAATT
1 TAAAAATTAAAAAATT-AAAATT
7884976 T-AAAATTAA
1 TAAAAATTAA
7884985 TCAATAGTGG
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
21 7 0.15
22 29 0.60
23 12 0.25
ACGTcount: A:0.68, C:0.01, G:0.00, T:0.30
Consensus pattern (22 bp):
TAAAAATTAAAAAATTAAAATT
Found at i:7884972 original size:7 final size:7
Alignment explanation
Indices: 7884903--7884984 Score: 92
Period size: 7 Copynumber: 11.3 Consensus size: 7
7884893 AAATAAACTC
*
7884903 AAAAAAT
1 AAAAATT
7884910 AAAAATT
1 AAAAATT
7884917 AAAAAATT
1 -AAAAATT
*
7884925 AAAATTT
1 AAAAATT
*
7884932 AAAAATA
1 AAAAATT
7884939 AAAAATT
1 AAAAATT
*
7884946 TAAAATT
1 AAAAATT
7884953 AAAAAATT
1 -AAAAATT
7884961 AAAAACTT
1 AAAAA-TT
7884969 AAAAATT
1 AAAAATT
*
7884976 TAAAATT
1 AAAAATT
7884983 AA
1 AA
7884985 TCAATAGTGG
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
7 43 0.68
8 20 0.32
ACGTcount: A:0.71, C:0.01, G:0.00, T:0.28
Consensus pattern (7 bp):
AAAAATT
Found at i:7888734 original size:19 final size:21
Alignment explanation
Indices: 7888706--7888753 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
7888696 TTATTATTTA
7888706 TTTTAGTTTTGATTCTAA-AT
1 TTTTAGTTTTGATTCTAATAT
* *
7888726 TTTTA-TTTTTATTTTAATAT
1 TTTTAGTTTTGATTCTAATAT
7888746 TTTTAGTT
1 TTTTAGTT
7888754 AAAATTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.42
20 12 0.50
21 2 0.08
ACGTcount: A:0.23, C:0.02, G:0.06, T:0.69
Consensus pattern (21 bp):
TTTTAGTTTTGATTCTAATAT
Found at i:7895634 original size:12 final size:12
Alignment explanation
Indices: 7895617--7895641 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7895607 TTGTGTGTTC
7895617 TTTATTTTATTT
1 TTTATTTTATTT
7895629 TTTATTTTATTT
1 TTTATTTTATTT
7895641 T
1 T
7895642 ATTTTTCACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTATTTTATTT
Found at i:7906238 original size:21 final size:21
Alignment explanation
Indices: 7906212--7906254 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
7906202 ACACAGACTA
*
7906212 TTCACACGGACGTGTGGGGCC
1 TTCACACGGACGTGTGAGGCC
*
7906233 TTCACACGGGCGTGTGAGGCC
1 TTCACACGGACGTGTGAGGCC
7906254 T
1 T
7906255 CTATATGGGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.14, C:0.28, G:0.37, T:0.21
Consensus pattern (21 bp):
TTCACACGGACGTGTGAGGCC
Found at i:7908997 original size:50 final size:50
Alignment explanation
Indices: 7908922--7909147 Score: 328
Period size: 50 Copynumber: 4.5 Consensus size: 50
7908912 TATGGCAACC
* * *
7908922 AGTGATAAGTGATAGCTTTGTCTACACTTATCTGATCAAGGATAAGTGAA
1 AGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGAA
7908972 AGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGAA
1 AGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGAA
*
7909022 AGTGATAAGTGATAGCTTTGGCTACACTTATCTGATCAAGGACAAGTGAA
1 AGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGAA
* * *
7909072 AGTGATAAGTGATGGCTTCGACTACACTTATCTAATCAAGGACGAA-TGACA
1 AGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGAC-AAGTGA-A
* ** *
7909123 AGTGAAAAGTGGCAGCTTCAGCTAC
1 AGTGATAAGTGATAGCTTCGGCTAC
7909148 CTGATCAGTG
Statistics
Matches: 160, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
50 138 0.86
51 22 0.14
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.27
Consensus pattern (50 bp):
AGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGAA
Found at i:7909161 original size:31 final size:31
Alignment explanation
Indices: 7909123--7909238 Score: 160
Period size: 31 Copynumber: 3.7 Consensus size: 31
7909113 ACGAATGACA
* *
7909123 AGTGAAAAGTGGCAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
7909154 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
7909185 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * * *
7909216 GGTGAATAGTGGTAACTTTGGCT
1 AGTGAAAAGTGGTAGCTTCGGCT
7909239 GCAAGTGACA
Statistics
Matches: 75, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 75 1.00
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:7909405 original size:48 final size:47
Alignment explanation
Indices: 7909309--7909563 Score: 266
Period size: 42 Copynumber: 5.6 Consensus size: 47
7909299 TGCTACTGTA
* * * * *
7909309 TAAGATCATATCTGGGATATGGCATC-A-GTGAGATATGTGATTCGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGA-TCGTG
*
7909355 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTTATCCGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGAT-CGTG
* *
7909403 TAAGACCATAGCTGGGATATGGCATCGATATGTGATATGTGATTACGAG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGA-T-CGTG
7909452 TAAGACCATAGCTGGGCTATGGCATCGATATGTGA-A--T-AT-GTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATCGTG
*
7909494 TAAGACCATAGCTGGGCTATGGCGTC-ATTATGTGA-A---GAT-GTG
1 TAAGACCATAGCTGGGCTATGGCATCGA-TATGTGATATGTGATCGTG
* **
7909536 TAAGACCATAGTTGAACTATGGCATCGA
1 TAAGACCATAGCTGGGCTATGGCATCGA
7909564 GAAAATGAAG
Statistics
Matches: 185, Mismatches: 17, Indels: 17
0.84 0.08 0.08
Matches are distributed among these distances:
41 1 0.01
42 62 0.34
43 1 0.01
44 1 0.01
45 1 0.01
46 24 0.13
47 2 0.01
48 55 0.30
49 38 0.21
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (47 bp):
TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATCGTG
Found at i:7909474 original size:49 final size:48
Alignment explanation
Indices: 7909309--7909516 Score: 261
Period size: 48 Copynumber: 4.5 Consensus size: 48
7909299 TGCTACTGTA
* * * *
7909309 TAAGATCATATCTGGGATATGGCATC-A-GTGAGATATGTGATTCGTG
1 TAAGACCATAGCTGGGATATGGCATCGATATGTGATATGTGATTCGTG
* * *
7909355 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTTATCCGTG
1 TAAGACCATAGCTGGGATATGGCATCGATATGTGATATGTGATTCGTG
*
7909403 TAAGACCATAGCTGGGATATGGCATCGATATGTGATATGTGATTACGAG
1 TAAGACCATAGCTGGGATATGGCATCGATATGTGATATGTGATT-CGTG
*
7909452 TAAGACCATAGCTGGGCTATGGCATCGATATGTGA-A--T-A-T-GTG
1 TAAGACCATAGCTGGGATATGGCATCGATATGTGATATGTGATTCGTG
*
7909494 TAAGACCATAGCTGGGCTATGGC
1 TAAGACCATAGCTGGGATATGGC
7909517 GTCATTATGT
Statistics
Matches: 146, Mismatches: 13, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
42 25 0.17
44 1 0.01
45 1 0.01
46 24 0.16
47 1 0.01
48 57 0.39
49 37 0.25
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.29
Consensus pattern (48 bp):
TAAGACCATAGCTGGGATATGGCATCGATATGTGATATGTGATTCGTG
Found at i:7911769 original size:3 final size:3
Alignment explanation
Indices: 7911761--7911788 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
7911751 AAGAGCAATT
7911761 TCA TCA TCA TCA TCA TCA TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA T
7911789 AATCTTCTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.36
Consensus pattern (3 bp):
TCA
Found at i:7911797 original size:3 final size:3
Alignment explanation
Indices: 7911791--7912585 Score: 1590
Period size: 3 Copynumber: 265.0 Consensus size: 3
7911781 ATCATCATAA
7911791 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
7911839 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
7911887 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
7911935 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
7911983 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
7912031 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
7912079 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
7912127 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
7912175 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
7912223 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
7912271 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
7912319 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
7912367 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
7912415 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
7912463 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
7912511 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
7912559 TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT
7912586 ACCCAGCCTA
Statistics
Matches: 792, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 792 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:7917026 original size:60 final size:57
Alignment explanation
Indices: 7916955--7917065 Score: 168
Period size: 60 Copynumber: 1.9 Consensus size: 57
7916945 ATATTTTTAG
* **
7916955 TATTAAATTTAATTTAATATTTATCTTGTAGATAAGTATTCTATTAATTTAATAAATTTC
1 TATTAAATTTAATCTAATATTTATC-T-T-GATAAGTATTAAATTAATTTAATAAATTTC
7917015 TATTAAATTTAATCTAATATTTATCTTGATAAGTATTAAATTAATTTAATA
1 TATTAAATTTAATCTAATATTTATCTTGATAAGTATTAAATTAATTTAATA
7917066 TTAAAGTGAT
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
57 22 0.46
58 1 0.02
59 1 0.02
60 24 0.50
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.50
Consensus pattern (57 bp):
TATTAAATTTAATCTAATATTTATCTTGATAAGTATTAAATTAATTTAATAAATTTC
Found at i:7917108 original size:9 final size:9
Alignment explanation
Indices: 7917094--7917118 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
7917084 ATTATAGTTG
7917094 AACTCTCTA
1 AACTCTCTA
7917103 AACTCTCTA
1 AACTCTCTA
7917112 AACTCTC
1 AACTCTC
7917119 CCTATATTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (9 bp):
AACTCTCTA
Found at i:7920040 original size:12 final size:12
Alignment explanation
Indices: 7920023--7920047 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7920013 CTCCAGTGTT
7920023 ATTTGTTATGAA
1 ATTTGTTATGAA
7920035 ATTTGTTATGAA
1 ATTTGTTATGAA
7920047 A
1 A
7920048 AAAAGATGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (12 bp):
ATTTGTTATGAA
Found at i:7922139 original size:46 final size:46
Alignment explanation
Indices: 7922072--7922246 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
7922062 TGTAACCCGC
7922072 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
* *
7922118 CCATAAGTGAACTCGGGCTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-A-TTCGCAT
* * * * **
7922168 -C-TCA-CGAACTCGGATTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
*
7922211 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
7922247 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.58
47 24 0.23
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:7922195 original size:93 final size:93
Alignment explanation
Indices: 7922080--7922250 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
7922070 GCCCATAAGT
** *
7922080 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGGCTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
7922145 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* *
7922173 GAACTCGGATTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
7922238 CGAGTTCGGATGC
66 CGAGCTCGGATGC
7922251 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:7928821 original size:28 final size:28
Alignment explanation
Indices: 7928767--7928823 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 28
7928757 TACACATTTC
*
7928767 AAATATATATATATATATAGAAGACTAA
1 AAATATATATATATATATAGAAAACTAA
7928795 AAATAT-TATAT-TATATTAGAAAAACTAA
1 AAATATATATATATATA-TAG-AAAACTAA
7928823 A
1 A
7928824 TTCATCAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 4 0.15
27 8 0.31
28 14 0.54
ACGTcount: A:0.58, C:0.04, G:0.05, T:0.33
Consensus pattern (28 bp):
AAATATATATATATATATAGAAAACTAA
Found at i:7947944 original size:45 final size:45
Alignment explanation
Indices: 7947891--7948235 Score: 215
Period size: 45 Copynumber: 7.6 Consensus size: 45
7947881 TTTAATTCGT
* * *
7947891 TCCACTGCAACTTCAGGGAAATAAGATTCACTAACTTTAGTCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTCAGTAACTTTAATCTGC
* *
7947936 TCCACTGCAACTTCAGGGAAATAAGACTT--GTAA-TTTCAACCTGC
1 TCCACTGCAACTTCAGGGAGATAAGA-TTCAGTAACTTT-AATCTGC
* * * * * *
7947980 TCCACTGCATCTTCAGGGAGATGAGGTT-TGTGACTTTAATCTAC
1 TCCACTGCAACTTCAGGGAGATAAGATTCAGTAACTTTAATCTGC
* * * * * **
7948024 TCAACTGTAACTTCAGGGAGATGAGATTCGCCATGGTAACTTGATTCAAC
1 TCCACTGCAACTTCAGGGAGATAAGATT---CA--GTAACTTTAATCTGC
* * * * * *
7948074 -CTACTACAACTTCAGAGG-TATAAGATTTA-TAGCTTTAATCTAC
1 TCCACTGCAACTTCAG-GGAGATAAGATTCAGTAACTTTAATCTGC
* * * * *
7948117 TCTACTGCAACTTCAGAGAGATAAGATT-TGCTATA-TTGAGTCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTCAG-TA-ACTTTAATCTGC
* * *
7948162 TCCACTGCAACTTTAGGGAGATAAGACTCTA-TGACTTTAATCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTC-AGTAACTTTAATCTGC
* *
7948207 TCCACTGTAACTTCAGGGAGATGAGATTC
1 TCCACTGCAACTTCAGGGAGATAAGATTC
7948236 GCCATGGTAA
Statistics
Matches: 232, Mismatches: 49, Indels: 38
0.73 0.15 0.12
Matches are distributed among these distances:
43 16 0.07
44 85 0.37
45 96 0.41
46 3 0.01
49 19 0.08
50 13 0.06
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.31
Consensus pattern (45 bp):
TCCACTGCAACTTCAGGGAGATAAGATTCAGTAACTTTAATCTGC
Found at i:7947995 original size:44 final size:44
Alignment explanation
Indices: 7947891--7947998 Score: 139
Period size: 44 Copynumber: 2.4 Consensus size: 44
7947881 TTTAATTCGT
**
7947891 TCCACTGCAACTTCAGGGAAATAAGATTCACTAACTTTAGTCTGC
1 TCCACTGCAACTTCAGGGAAATAAGATT-ACTAACTTTAACCTGC
*
7947936 TCCACTGCAACTTCAGGGAAATAAGACTT-GTAA-TTTCAACCTGC
1 TCCACTGCAACTTCAGGGAAATAAGA-TTACTAACTTT-AACCTGC
*
7947980 TCCACTGCATCTTCAGGGA
1 TCCACTGCAACTTCAGGGA
7947999 GATGAGGTTT
Statistics
Matches: 57, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
43 3 0.05
44 26 0.46
45 26 0.46
46 2 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (44 bp):
TCCACTGCAACTTCAGGGAAATAAGATTACTAACTTTAACCTGC
Found at i:7948118 original size:93 final size:93
Alignment explanation
Indices: 7948013--7948327 Score: 347
Period size: 93 Copynumber: 3.4 Consensus size: 93
7948003 AGGTTTGTGA
* * *
7948013 CTTTAATCTACTCAACTGTAACTTCAGGGAGATGAGATTCGCCATGGTAACTTGATTCAACCTAC
1 CTTTAATCTACTCTACTGTAACTTCAGAGAGATAAGATTCGCCATGGTAACTTGATTCAACCTAC
*
7948078 TACAACTTCAGAGGTATAAGATTTATAG
66 TGCAACTTCAGAGGTATAAGATTTATAG
* * * * ** *
7948106 CTTTAATCTACTCTACTGCAACTTCAGAGAGATAAGATTTG-C-T-AT-A-TTGAGTCTGCTCCA
1 CTTTAATCTACTCTACTGTAACTTCAGAGAGATAAGATTCGCCATGGTAACTTGATTCAAC-CTA
* * *
7948166 CTGCAACTTTAG-GGAGATAAGACTCTAT-G
65 CTGCAACTTCAGAGG-TATAAGA-TTTATAG
* * * * *
7948195 ACTTTAATCTGCTCCACTGTAACTTCAGGGAGATGAGATTCGCCATGGTAACTTGATCCAACCTA
1 -CTTTAATCTACTCTACTGTAACTTCAGAGAGATAAGATTCGCCATGGTAACTTGATTCAACCTA
*
7948260 CTGCAACTTCAGAGGTATAGGATTTATAG
65 CTGCAACTTCAGAGGTATAAGATTTATAG
* *
7948289 CTTTAATTTGCTCTACTGTAACTTCAGAGAGATAAGATT
1 CTTTAATCTACTCTACTGTAACTTCAGAGAGATAAGATT
7948328 TGCTATATTG
Statistics
Matches: 177, Mismatches: 34, Indels: 22
0.76 0.15 0.09
Matches are distributed among these distances:
88 9 0.05
89 20 0.11
90 40 0.23
91 2 0.01
92 2 0.01
93 76 0.43
94 20 0.11
95 8 0.05
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (93 bp):
CTTTAATCTACTCTACTGTAACTTCAGAGAGATAAGATTCGCCATGGTAACTTGATTCAACCTAC
TGCAACTTCAGAGGTATAAGATTTATAG
Found at i:7948141 original size:44 final size:44
Alignment explanation
Indices: 7948074--7948328 Score: 160
Period size: 45 Copynumber: 5.6 Consensus size: 44
7948064 TTGATTCAAC
* *
7948074 CTACTACAACTTCAGAG-GTATAAGATTTATAGCTTTAATCTACT
1 CTACTGCAACTTCAGAGAG-ATAAGATTTATAGCTTTAATCTGCT
* ** * *
7948118 CTACTGCAACTTCAGAGAGATAAGATTTGCTATATTGAGTCTGCT
1 CTACTGCAACTTCAGAGAGATAAGATTT-ATAGCTTTAATCTGCT
* * * *
7948163 CCACTGCAACTTTAGGGAGATAAGACTCTAT-GACTTTAATCTGCT
1 CTACTGCAACTTCAGAGAGATAAGA-TTTATAG-CTTTAATCTGCT
* * * * * * * **
7948208 CCACTGTAACTTCAGGGAGATGAGATTCGCCAT-GGTAACTTGATCCAAC-
1 CTACTGCAACTTCAGAGAGATAAGATT---TATAGCT---TTAAT-CTGCT
* *
7948257 CTACTGCAACTTCAGAG-GTATAGGATTTATAGCTTTAATTTGCT
1 CTACTGCAACTTCAGAGAG-ATAAGATTTATAGCTTTAATCTGCT
*
7948301 CTACTGTAACTTCAGAGAGATAAGATTT
1 CTACTGCAACTTCAGAGAGATAAGATTT
7948329 GCTATATTGA
Statistics
Matches: 158, Mismatches: 38, Indels: 30
0.70 0.17 0.13
Matches are distributed among these distances:
43 1 0.01
44 54 0.34
45 66 0.42
46 5 0.03
47 5 0.03
48 1 0.01
49 24 0.15
50 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (44 bp):
CTACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAATCTGCT
Found at i:7948235 original size:183 final size:182
Alignment explanation
Indices: 7947898--7948346 Score: 616
Period size: 183 Copynumber: 2.5 Consensus size: 182
7947888 CGTTCCACTG
* * * * * * *
7947898 CAACTTCAG-GGAAATAAGATTCACTAACTTTAGTCTGCTCCACTGCAACTTCAGGGAAATAAGA
1 CAACTTCAGAGG-TATAAGATTTA-TAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGA
* * ** * * * * *
7947962 CTTG-TA-ATTTCAACCTGCTCCACTGCATCTTCAGGGAGATGAGGTTTGTGACTTTAATCTACT
64 TTTGCTATA-TTGAGTCTGCTCCACTGCAACTTCAGGGAGATAAGCTCTATGACTTTAATCTACT
*
7948025 CAACTGTAACTTCAGGGAGATGAGATTCGCCATGGTAACTTGATTCAACCTACTA
128 CAACTGTAACTTCAGGGAGATGAGATTCGCCATGGTAACTTGATCCAACCTACTA
*
7948080 CAACTTCAGAGGTATAAGATTTATAGCTTTAATCTACTCTACTGCAACTTCAGAGAGATAAGATT
1 CAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATT
* * *
7948145 TGCTATATTGAGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTCTATGACTTTAATCTGCTCC
66 TGCTATATTGAGTCTGCTCCACTGCAACTTCAGGGAGATAAG-CTCTATGACTTTAATCTACTCA
*
7948210 ACTGTAACTTCAGGGAGATGAGATTCGCCATGGTAACTTGATCCAACCTACTG
130 ACTGTAACTTCAGGGAGATGAGATTCGCCATGGTAACTTGATCCAACCTACTA
* * *
7948263 CAACTTCAGAGGTATAGGATTTATAGCTTTAATTTGCTCTACTGTAACTTCAGAGAGATAAGATT
1 CAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATT
7948328 TGCTATATTGAGTCTGCTC
66 TGCTATATTGAGTCTGCTC
7948347 TATATTGAGT
Statistics
Matches: 237, Mismatches: 26, Indels: 7
0.88 0.10 0.03
Matches are distributed among these distances:
181 37 0.16
182 49 0.21
183 151 0.64
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (182 bp):
CAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATT
TGCTATATTGAGTCTGCTCCACTGCAACTTCAGGGAGATAAGCTCTATGACTTTAATCTACTCAA
CTGTAACTTCAGGGAGATGAGATTCGCCATGGTAACTTGATCCAACCTACTA
Found at i:7948351 original size:16 final size:16
Alignment explanation
Indices: 7948330--7948362 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
7948320 ATAAGATTTG
7948330 CTATATTGAGTCTGCT
1 CTATATTGAGTCTGCT
7948346 CTATATTGAGTCTGCT
1 CTATATTGAGTCTGCT
7948362 C
1 C
7948363 CACTGCAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.21, G:0.18, T:0.42
Consensus pattern (16 bp):
CTATATTGAGTCTGCT
Found at i:7948484 original size:44 final size:44
Alignment explanation
Indices: 7948407--7948533 Score: 164
Period size: 44 Copynumber: 2.9 Consensus size: 44
7948397 TGTAGCTTTG
* ** * * *
7948407 ATCTACTCTACTGTAACTTCAGAGAGATAAGATTCGTGACTTCA
1 ATCTACTCCACTAAAACTTCAGGGAGACAAGATTCGTCACTTCA
* * *
7948451 ATCTGCTCCACTACAACTTCAGGGAGACAAGATTCGCCACTTCA
1 ATCTACTCCACTAAAACTTCAGGGAGACAAGATTCGTCACTTCA
*
7948495 ATCTACTCCACTAAAACTTCAGGGAGACAAAATTCGTCA
1 ATCTACTCCACTAAAACTTCAGGGAGACAAGATTCGTCA
7948534 TGGTGATTTC
Statistics
Matches: 71, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 71 1.00
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (44 bp):
ATCTACTCCACTAAAACTTCAGGGAGACAAGATTCGTCACTTCA
Found at i:7956725 original size:19 final size:20
Alignment explanation
Indices: 7956687--7956730 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
7956677 GGGTCTTTTC
* * *
7956687 ATGAAATTTAATGCATATG-
1 ATGAAATGTAATGAAAATGA
7956706 ATGAAATGTAATGAAAATGA
1 ATGAAATGTAATGAAAATGA
7956726 ATGAA
1 ATGAA
7956731 TGCAAAAAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.50, C:0.02, G:0.18, T:0.30
Consensus pattern (20 bp):
ATGAAATGTAATGAAAATGA
Found at i:7960448 original size:23 final size:22
Alignment explanation
Indices: 7960421--7960477 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 22
7960411 TAAAGAAATG
*
7960421 AAATAAATAATATAGACGATT-T
1 AAATAAATAATA-AGACAATTCT
7960443 AGAATAAATAATAAGACAATTCT
1 A-AATAAATAATAAGACAATTCT
*
7960466 AAACAAATAATA
1 AAATAAATAATA
7960478 CATAAAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
22 18 0.58
23 13 0.42
ACGTcount: A:0.60, C:0.07, G:0.07, T:0.26
Consensus pattern (22 bp):
AAATAAATAATAAGACAATTCT
Found at i:7960674 original size:18 final size:17
Alignment explanation
Indices: 7960651--7960707 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 17
7960641 AAAGAAATTT
7960651 AGAATACATAATATATAA
1 AGAATA-ATAATATATAA
*
7960669 AGAATATATAATAGTTTAA
1 AGAATA-ATAATA-TATAA
* *
7960688 AAAATAATAATGTA-AA
1 AGAATAATAATATATAA
7960704 AGAA
1 AGAA
7960708 ATTTAAAGTA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
16 5 0.16
17 1 0.03
18 17 0.53
19 9 0.28
ACGTcount: A:0.61, C:0.02, G:0.09, T:0.28
Consensus pattern (17 bp):
AGAATAATAATATATAA
Found at i:7960728 original size:61 final size:61
Alignment explanation
Indices: 7960612--7960730 Score: 152
Period size: 61 Copynumber: 1.9 Consensus size: 61
7960602 CTAAAATGAC
* *
7960612 ATATAAAAGTTTAAACTAAATAATATAAAAAAGAAATTTAGAATACATAATATATAAAGAAT
1 ATATAAAAGTTTAAAC-AAATAATATAAAAAAGAAATTTAGAATAAATAACATATAAAGAAT
* **
7960674 ATATAATAGTTTAAA-AAATAATAATGTAAAAGAAATTTA-AAGTAAATAACATATAAA
1 ATATAAAAGTTTAAACAAATAAT-ATAAAAAAGAAATTTAGAA-TAAATAACATATAAA
7960731 ATAATTTGAA
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
60 9 0.18
61 27 0.54
62 14 0.28
ACGTcount: A:0.61, C:0.03, G:0.07, T:0.29
Consensus pattern (61 bp):
ATATAAAAGTTTAAACAAATAATATAAAAAAGAAATTTAGAATAAATAACATATAAAGAAT
Found at i:7964257 original size:44 final size:44
Alignment explanation
Indices: 7964146--7964260 Score: 121
Period size: 44 Copynumber: 2.7 Consensus size: 44
7964136 AGCTCGTACA
*
7964146 ATGCCAACATCCCAGACGTGGTCTT--ACATGAAATCAAATACG
1 ATGCCAACGTCCCAGACGTGGTCTTACACATGAAATCAAATACG
** * * *
7964188 ATATCAATGTCCCAGACATGATCTTACACAT-AAATCACAA-ATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACATGAAATCA-AATA-CG
*
7964232 ATGCCAACGTCCCAGATGTGGTCTTACAC
1 ATGCCAACGTCCCAGACGTGGTCTTACAC
7964261 GAAAACACAT
Statistics
Matches: 57, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
42 19 0.33
43 7 0.12
44 31 0.54
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.23
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACATGAAATCAAATACG
Found at i:7966698 original size:26 final size:26
Alignment explanation
Indices: 7966662--7966713 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
7966652 CATATAATTG
7966662 TAGGCTGTTATTTCCACGTCACTAAA
1 TAGGCTGTTATTTCCACGTCACTAAA
7966688 TAGGCTGTTATTTCCACGTCACTAAA
1 TAGGCTGTTATTTCCACGTCACTAAA
7966714 AAACTAGTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (26 bp):
TAGGCTGTTATTTCCACGTCACTAAA
Found at i:7966723 original size:26 final size:26
Alignment explanation
Indices: 7966666--7966723 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
7966656 TAATTGTAGG
**
7966666 CTGTTATTTCCACGTCACTAAATAGG
1 CTGTTATTTCCACGTCACTAAATAAA
7966692 CTGTTATTTCCACGTCACTAAA-AAA
1 CTGTTATTTCCACGTCACTAAATAAA
7966717 CTAGTTA
1 CT-GTTA
7966724 ATAGATTCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 3 0.10
26 26 0.90
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.34
Consensus pattern (26 bp):
CTGTTATTTCCACGTCACTAAATAAA
Found at i:7968434 original size:21 final size:22
Alignment explanation
Indices: 7968385--7968435 Score: 54
Period size: 21 Copynumber: 2.4 Consensus size: 22
7968375 TTAAATGTGT
*
7968385 TATATTTTTCTAAAATGATAAAG
1 TATA-TTTTCTAAAATAATAAAG
7968408 TA-ATTTTC-AAAATAATATAA-
1 TATATTTTCTAAAATAATA-AAG
7968428 TATATTTT
1 TATATTTT
7968436 TTATACAATG
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
20 10 0.40
21 12 0.48
22 1 0.04
23 2 0.08
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (22 bp):
TATATTTTCTAAAATAATAAAG
Found at i:7968436 original size:22 final size:23
Alignment explanation
Indices: 7968385--7968436 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 23
7968375 TTAAATGTGT
*
7968385 TATATTTTTCTAAAATGATAAAG
1 TATATTTTTCTAAAATAATAAAG
7968408 TA-A-TTTTC-AAAATAATATAA-
1 TATATTTTTCTAAAATAATA-AAG
7968428 TATATTTTT
1 TATATTTTT
7968437 TATACAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
20 10 0.40
21 8 0.32
22 5 0.20
23 2 0.08
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.48
Consensus pattern (23 bp):
TATATTTTTCTAAAATAATAAAG
Found at i:7970098 original size:13 final size:15
Alignment explanation
Indices: 7970078--7970112 Score: 56
Period size: 13 Copynumber: 2.5 Consensus size: 15
7970068 AGTAATTATA
7970078 AGAGAAAAAAAA-AG
1 AGAGAAAAAAAAGAG
7970092 A-AGAAAAAAAAGAG
1 AGAGAAAAAAAAGAG
7970106 AGAGAAA
1 AGAGAAA
7970113 GAACAGATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 10 0.53
14 4 0.21
15 5 0.26
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (15 bp):
AGAGAAAAAAAAGAG
Found at i:7980195 original size:45 final size:45
Alignment explanation
Indices: 7980125--7980210 Score: 145
Period size: 45 Copynumber: 1.9 Consensus size: 45
7980115 CATTTTAGTA
*
7980125 CCTTAGAAAGCACTTCAGAAAAGAGTGTCAAAGGTTTACTTTGCT
1 CCTTAGAAAGCACTTCAGAAAAGAGTGCCAAAGGTTTACTTTGCT
* *
7980170 CCTTGGAAAGCACTTCAGAAGAGAGTGCCAAAGGTTTACTT
1 CCTTAGAAAGCACTTCAGAAAAGAGTGCCAAAGGTTTACTT
7980211 GGCTATGAGA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.27
Consensus pattern (45 bp):
CCTTAGAAAGCACTTCAGAAAAGAGTGCCAAAGGTTTACTTTGCT
Found at i:7984413 original size:18 final size:18
Alignment explanation
Indices: 7984344--7984460 Score: 76
Period size: 18 Copynumber: 6.4 Consensus size: 18
7984334 ATAGTAATTA
*
7984344 ATCAATCAGTAATATTCATT
1 ATCAATCAGT--TATTCAGT
* * *
7984364 AACAATCAGTCAATCAG-
1 ATCAATCAGTTATTCAGT
* * *
7984381 AACAATTATTTATTCAGT
1 ATCAATCAGTTATTCAGT
* *
7984399 ATCAGTCAGTTATTCGGT
1 ATCAATCAGTTATTCAGT
* * *
7984417 AACAATCAATTATTCAAT
1 ATCAATCAGTTATTCAGT
*
7984435 AAT-AATAAGTTATTCAGT
1 -ATCAATCAGTTATTCAGT
7984453 ATCAATCA
1 ATCAATCA
7984461 ATTGATCGGT
Statistics
Matches: 71, Mismatches: 23, Indels: 8
0.70 0.23 0.08
Matches are distributed among these distances:
17 15 0.21
18 46 0.65
19 1 0.01
20 9 0.13
ACGTcount: A:0.41, C:0.15, G:0.09, T:0.35
Consensus pattern (18 bp):
ATCAATCAGTTATTCAGT
Found at i:7984535 original size:19 final size:19
Alignment explanation
Indices: 7984390--7984537 Score: 72
Period size: 18 Copynumber: 7.7 Consensus size: 19
7984380 GAACAATTAT
* * *
7984390 TTATTCAGTATCAGTC-AG
1 TTATTCAGTAACAATCAAA
*
7984408 TTATTCGGTAACAATC-AA
1 TTATTCAGTAACAATCAAA
* * *
7984426 TTATTCAATAATAAT-AAG
1 TTATTCAGTAACAATCAAA
*
7984444 TTATTCAGTATCAATCAATTGA
1 TTATTCAGTAACAATCAA---A
* *
7984466 TCGGTTATCCAGTAACAGTC-AA
1 ----TTATTCAGTAACAATCAAA
* *
7984488 TTATTCAGTAAAAATCAGA
1 TTATTCAGTAACAATCAAA
* *
7984507 -TATACAGTAACAATTAAA
1 TTATTCAGTAACAATCAAA
7984525 TTATTCAGTAACA
1 TTATTCAGTAACA
7984538 GTCGATCTTT
Statistics
Matches: 95, Mismatches: 24, Indels: 21
0.68 0.17 0.15
Matches are distributed among these distances:
18 66 0.69
19 14 0.15
22 1 0.01
25 1 0.01
26 13 0.14
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.34
Consensus pattern (19 bp):
TTATTCAGTAACAATCAAA
Found at i:7984733 original size:53 final size:53
Alignment explanation
Indices: 7984659--7984779 Score: 152
Period size: 53 Copynumber: 2.3 Consensus size: 53
7984649 CCGAAACAGT
* * * * *
7984659 AACAGTAACAGTAGCAGTACGGTACATAGAGTACCTAATCAAAATAAATCCGG
1 AACAGTAACAGTAACAATACGGTACACAGAGTACCTAATCAAAACAAATCCGA
* * **
7984712 AACGGTAACAGTAACAATACGGTACACAGAGTACCTCATCGGAACAAATCCGA
1 AACAGTAACAGTAACAATACGGTACACAGAGTACCTAATCAAAACAAATCCGA
*
7984765 AATAGTAACAGTAAC
1 AACAGTAACAGTAAC
7984780 GGTAACAGTA
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
53 57 1.00
ACGTcount: A:0.44, C:0.21, G:0.18, T:0.17
Consensus pattern (53 bp):
AACAGTAACAGTAACAATACGGTACACAGAGTACCTAATCAAAACAAATCCGA
Found at i:7985624 original size:16 final size:16
Alignment explanation
Indices: 7985598--7985634 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
7985588 TCCCTATTTC
7985598 TCCTT-TTTCTTTCTT
1 TCCTTCTTTCTTTCTT
*
7985613 TTCTTCTTTCTTTCTT
1 TCCTTCTTTCTTTCTT
7985629 TCCTTC
1 TCCTTC
7985635 CCCTGCTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (16 bp):
TCCTTCTTTCTTTCTT
Done.