Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 262 of 322
Found at i:87034867 original size:6 final size:6
Alignment explanation
Indices: 87034850--87034879 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
87034840 CACCACCATC
*
87034850 ATCATG AGCATG ATCATG ATCATG ATCATG
1 ATCATG ATCATG ATCATG ATCATG ATCATG
87034880 GCCATGACCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (6 bp):
ATCATG
Found at i:87034867 original size:12 final size:12
Alignment explanation
Indices: 87034850--87034892 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
87034840 CACCACCATC
87034850 ATCATGAGCATG
1 ATCATGAGCATG
*
87034862 ATCATGATCATG
1 ATCATGAGCATG
87034874 ATCATG-GCCATG
1 ATCATGAG-CATG
*
87034886 ACCATGA
1 ATCATGA
87034893 CCATCACCAC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.26
Consensus pattern (12 bp):
ATCATGAGCATG
Found at i:87034885 original size:18 final size:18
Alignment explanation
Indices: 87034844--87034892 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
87034834 CACGAACACC
*
87034844 ACCATCATCATGAGCATG
1 ACCATGATCATGAGCATG
* *
87034862 ATCATGATCATGATCATG
1 ACCATGATCATGAGCATG
* *
87034880 GCCATGACCATGA
1 ACCATGATCATGA
87034893 CCATCACCAC
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.24
Consensus pattern (18 bp):
ACCATGATCATGAGCATG
Found at i:87041800 original size:3 final size:3
Alignment explanation
Indices: 87041792--87041818 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
87041782 CATATTTGTC
87041792 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
87041819 AAGGCAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:87045250 original size:28 final size:30
Alignment explanation
Indices: 87045196--87045256 Score: 81
Period size: 28 Copynumber: 2.1 Consensus size: 30
87045186 ATGCTTTAAT
**
87045196 TTTATATTGAAGTTTCTCACTTTATTTT-A
1 TTTATATTGAAGTTTCTCACTAAATTTTGA
*
87045225 TTTA-ATTGAAGTTTGTCACTAAATTTTGA
1 TTTATATTGAAGTTTCTCACTAAATTTTGA
87045254 TTT
1 TTT
87045257 TTTTTATTGA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 20 0.71
29 8 0.29
ACGTcount: A:0.26, C:0.08, G:0.10, T:0.56
Consensus pattern (30 bp):
TTTATATTGAAGTTTCTCACTAAATTTTGA
Found at i:87052840 original size:37 final size:37
Alignment explanation
Indices: 87052790--87052865 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
87052780 AAAAAGTGTG
87052790 AACAACTCGAGTTGGATTTGAAAATTCACTTGTTCCA
1 AACAACTCGAGTTGGATTTGAAAATTCACTTGTTCCA
87052827 AACAACTCGAGTTGGATTTGAAAATTCACTTGTTCCA
1 AACAACTCGAGTTGGATTTGAAAATTCACTTGTTCCA
87052864 AA
1 AA
87052866 GGAATAAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (37 bp):
AACAACTCGAGTTGGATTTGAAAATTCACTTGTTCCA
Found at i:87055391 original size:45 final size:44
Alignment explanation
Indices: 87055304--87055400 Score: 115
Period size: 45 Copynumber: 2.2 Consensus size: 44
87055294 GGTGGCTAAA
* * *
87055304 ATCTGCACCATAGCCAATACATGGAGATAAGACTCGCCATTTTC
1 ATCTGCTCCATAGCCAATACATGGAGATAAAACTCGCAATTTTC
* *
87055348 GATCTGCTCCATAGCCGATACATGGAGATAAAA-TCTGTAATTTTC
1 -ATCTGCTCCATAGCCAATACATGGAGATAAAACTC-GCAATTTTC
87055393 AGTCTGCT
1 A-TCTGCT
87055401 TCCTGCAACT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
44 3 0.07
45 42 0.93
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.29
Consensus pattern (44 bp):
ATCTGCTCCATAGCCAATACATGGAGATAAAACTCGCAATTTTC
Found at i:87055468 original size:177 final size:176
Alignment explanation
Indices: 87055080--87055960 Score: 975
Period size: 177 Copynumber: 5.0 Consensus size: 176
87055070 GGTTTGTGAC
* * * ** *
87055080 TTCAACCTGCTCCACTGCAACTTCAGGGAGACAAAGCCAGTGGCTAAAATCTGCTCCATAACCGA
1 TTCAACCTGCTCC-CTGCAACTTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGA
* * *
87055145 TACATGGAGATAAGACTCACCATCTTCGATCTGCTCCACAGCCGATACAT-GAGATAAGATCTGT
65 TACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGT
* * *
87055209 AATTTTTAGTCTGCTTCCTGCAACTTCAAGAAAATAAAACTTGCATC
130 AATTTTCAGTCTGCTTCCTGCAACTTCAAGAAAATAAGACTTGCATA
* * * * * * *
87055256 TTCAATCTGCTCTCTTGCTACCTCAGAGAGATAAGGTTGGTGGCTAAAATCTGCACCATAGCCAA
1 TTCAACCTGCTC-CCTGCAACTTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGA
*
87055321 TACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAAATCTGT
65 TACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGT
* * *
87055386 AATTTTCAGTCTGCTTCCTGCAACTTTAGGAAAATTAGACTTGCATA
130 AATTTTCAGTCTGCTTCCTGCAACTTCAAGAAAATAAGACTTGCATA
* * * *
87055433 TTGAGCCTGCTCCACTACAACTTCAGAGAGATAAGGCTGGTGGCTAAAATCTACTCCATAGCCGA
1 TTCAACCTGCTCC-CTGCAACTTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGA
* * *
87055498 TACATGGAGATAAGACTTGCCATTTTTGATCTGCTCCATAGCCGATACATGGAGATAAAATCTGT
65 TACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGT
*
87055563 AATTTTCAGTCTGCTTCCTGCAACTTCAAGAAGATAAGACTTGCATA
130 AATTTTCAGTCTGCTTCCTGCAACTTCAAGAAAATAAGACTTGCATA
* * * * * *
87055610 TTGAGCCTGCTCCCTTGCTACCTT-AGAGAGATATGGTTGGTGACTAAAATCTGCTCCATAGCCG
1 TTCAACCTGCTCCC-TGC-AACTTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCG
* * * *
87055674 ATACATGGAGATAAGATTCGCCATCTTCGATCTACTCGATAGCCGATACATGGAGATAAGATCTG
64 ATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAGATCTG
* * * ** **** *
87055739 TAATTTTTAGCCTG-TTACCATACTGCTT-AAGGGGTTAAGGC-T-CATA
129 TAATTTTCAGTCTGCTT-CC-TGCAACTTCAAGAAAATAAGACTTGCATA
* * * * * * * * * * *
87055785 TCTTCAACGTGCTCTCTTACTACCTCAAAGAGATAAGACCGGTGGTTAAGATCTGTTCCATAGCC
1 --TTCAACCTGCTC-CCTGCAACTTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCC
* * *
87055850 GATACATGGAGATAAGACTCACCA-TTTCTGATCTACTCCATAGCCGATACATGAAGATAAGATC
63 GATACATGGAGATAAGACTCGCCATTTTC-GATCTGCTCCATAGCCGATACATGGAGATAAGATC
* * * * *
87055914 TGTAATTTTCAGTCTACTTCCTTGCTACCTCAGGAAGATAAGACTTG
127 TGTAATTTTCAGTCTGCTTCC-TGCAACTTCAAGAAAATAAGACTTG
87055961 TGAATTCACT
Statistics
Matches: 593, Mismatches: 96, Indels: 28
0.83 0.13 0.04
Matches are distributed among these distances:
175 4 0.01
176 107 0.18
177 461 0.78
178 20 0.03
179 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.29
Consensus pattern (176 bp):
TTCAACCTGCTCCCTGCAACTTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGAT
ACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTA
ATTTTCAGTCTGCTTCCTGCAACTTCAAGAAAATAAGACTTGCATA
Found at i:87055705 original size:354 final size:353
Alignment explanation
Indices: 87055078--87055960 Score: 1121
Period size: 354 Copynumber: 2.5 Consensus size: 353
87055068 AAGGTTTGTG
* * * * * *
87055078 ACTTCAACCTGCTCCACTGCAACTTCAGGGAGACAAAGCCAGTGGCTAAAATCTGCTCCATAACC
1 ACTTCAACCTGCTCCACTACAACTTCAGAGAGATAAGGCCGGTGGCTAAAATCTGCTCCATAGCC
* * *
87055143 GATACATGGAGATAAGACTCACCATCTTCGATCTGCTCCACAGCCGATACAT-GAGATAAGATCT
66 GATACATGGAGATAAGACTCACCATTTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCT
* * * * * *
87055207 GTAATTTTTAGTCTGCTTCCTGCAACTTCAAGAAAATAAAACTTGCATCTTCAATCTGCTCTCTT
131 GTAATTTTCAGTCTGCTTCCTGCAACTTCAAGAAGATAAGACTTGCATATTCAACCTGCTCCCTT
*
87055272 GCTACCTCAGAGAGATAAGGTTGGTGGCTAAAATCTGCACCATAGCCAATACATGGAGATAAGAC
196 GCTACCTCAGAGAGATAAGGTTGGTGACTAAAATCTGCACCATAGCCAATACATGGAGATAAGAC
* * *
87055337 TCGCCATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAAATCTGTAATTTTCAGTCTGCTT
261 TCGCCATCTTCGATCTACTCCATAGCCGATACATGGAGATAAAATCTGTAATTTTCAGCCTG-TT
* *
87055402 -CC-TGCAACTTTAGGAAAATT-AGACTTGCAT
325 ACCATACAACTTAAGG--AATTAAGAC-T-CAT
* * * *
87055432 A-TTGAGCCTGCTCCACTACAACTTCAGAGAGATAAGGCTGGTGGCTAAAATCTACTCCATAGCC
1 ACTTCAACCTGCTCCACTACAACTTCAGAGAGATAAGGCCGGTGGCTAAAATCTGCTCCATAGCC
** *
87055496 GATACATGGAGATAAGACTTGCCATTTTTGATCTGCTCCATAGCCGATACATGGAGATAAAATCT
66 GATACATGGAGATAAGACTCACCATTTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCT
* *
87055561 GTAATTTTCAGTCTGCTTCCTGCAACTTCAAGAAGATAAGACTTGCATATTGAGCCTGCTCCCTT
131 GTAATTTTCAGTCTGCTTCCTGCAACTTCAAGAAGATAAGACTTGCATATTCAACCTGCTCCCTT
* * * * *
87055626 GCTACCTTAGAGAGATATGGTTGGTGACTAAAATCTGCTCCATAGCCGATACATGGAGATAAGAT
196 GCTACCTCAGAGAGATAAGGTTGGTGACTAAAATCTGCACCATAGCCAATACATGGAGATAAGAC
* * *
87055691 TCGCCATCTTCGATCTACTCGATAGCCGATACATGGAGATAAGATCTGTAATTTTTAGCCTGTTA
261 TCGCCATCTTCGATCTACTCCATAGCCGATACATGGAGATAAAATCTGTAATTTTCAGCCTGTTA
** ** *
87055756 CCATACTGCTTAAGGGGTTAAGGCTCAT
326 CCATACAACTTAAGGAATTAAGACTCAT
* * * * * * * * *
87055784 ATCTTCAACGTGCTCTC-TTACTACCTCAAAGAGATAAGACCGGTGGTTAAGATCTGTTCCATAG
1 A-CTTCAACCTGCTC-CACTACAACTTCAGAGAGATAAGGCCGGTGGCTAAAATCTGCTCCATAG
* * *
87055848 CCGATACATGGAGATAAGACTCACCATTTCTGATCTACTCCATAGCCGATACATGAAGATAAGAT
64 CCGATACATGGAGATAAGACTCACCATTTTTGATCTGCTCCATAGCCGATACATGGAGATAAGAT
* * * *
87055913 CTGTAATTTTCAGTCTACTTCCTTGCTACCTCAGGAAGATAAGACTTG
129 CTGTAATTTTCAGTCTGCTTCC-TGCAACTTCAAGAAGATAAGACTTG
87055961 TGAATTCACT
Statistics
Matches: 455, Mismatches: 66, Indels: 15
0.85 0.12 0.03
Matches are distributed among these distances:
352 4 0.01
353 105 0.23
354 315 0.69
355 31 0.07
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.29
Consensus pattern (353 bp):
ACTTCAACCTGCTCCACTACAACTTCAGAGAGATAAGGCCGGTGGCTAAAATCTGCTCCATAGCC
GATACATGGAGATAAGACTCACCATTTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCT
GTAATTTTCAGTCTGCTTCCTGCAACTTCAAGAAGATAAGACTTGCATATTCAACCTGCTCCCTT
GCTACCTCAGAGAGATAAGGTTGGTGACTAAAATCTGCACCATAGCCAATACATGGAGATAAGAC
TCGCCATCTTCGATCTACTCCATAGCCGATACATGGAGATAAAATCTGTAATTTTCAGCCTGTTA
CCATACAACTTAAGGAATTAAGACTCAT
Found at i:87057188 original size:6 final size:6
Alignment explanation
Indices: 87057179--87057203 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
87057169 CCTTGGCCTC
87057179 TCCTTT TCCTTT TCCTTT TCCTTT T
1 TCCTTT TCCTTT TCCTTT TCCTTT T
87057204 TTGTCTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (6 bp):
TCCTTT
Found at i:87057718 original size:6 final size:6
Alignment explanation
Indices: 87057707--87057731 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
87057697 TCTCTTTTTG
87057707 TTGTTT TTGTTT TTGTTT TTGTTT T
1 TTGTTT TTGTTT TTGTTT TTGTTT T
87057732 CTCTTTTCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (6 bp):
TTGTTT
Found at i:87059491 original size:5 final size:5
Alignment explanation
Indices: 87059481--87059505 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
87059471 ACAACAATAA
87059481 CAAAC CAAAC CAAAC CAAAC CAAAC
1 CAAAC CAAAC CAAAC CAAAC CAAAC
87059506 TAACATCAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.40, G:0.00, T:0.00
Consensus pattern (5 bp):
CAAAC
Found at i:87063219 original size:23 final size:24
Alignment explanation
Indices: 87063193--87063241 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
87063183 GCAAAACAGA
* *
87063193 GTAA-GGTTTTGTGGAAATGGGGG
1 GTAAGGGTTTCGTGGAAATAGGGG
*
87063216 GTAAGGGTTTCGTGGGAATAGGGG
1 GTAAGGGTTTCGTGGAAATAGGGG
87063240 GT
1 GT
87063242 TTGAATAACA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.20, C:0.02, G:0.49, T:0.29
Consensus pattern (24 bp):
GTAAGGGTTTCGTGGAAATAGGGG
Found at i:87067972 original size:17 final size:17
Alignment explanation
Indices: 87067946--87067979 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
87067936 AAAAATTTCT
*
87067946 CCCTTTCTACTCTGCTA
1 CCCTTCCTACTCTGCTA
87067963 CCCTTCCTACTCTGCTA
1 CCCTTCCTACTCTGCTA
87067980 GGGCGCAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.44, G:0.06, T:0.38
Consensus pattern (17 bp):
CCCTTCCTACTCTGCTA
Found at i:87070583 original size:14 final size:14
Alignment explanation
Indices: 87070564--87070592 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
87070554 TGAAACAAAC
87070564 TTTGTAATATAAAT
1 TTTGTAATATAAAT
87070578 TTTGTAATATAAAT
1 TTTGTAATATAAAT
87070592 T
1 T
87070593 AAATATATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (14 bp):
TTTGTAATATAAAT
Found at i:87071733 original size:18 final size:18
Alignment explanation
Indices: 87071710--87071746 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
87071700 AATAATGTGG
* *
87071710 TGTTTTAGTATATTTTAA
1 TGTTTTAATATATTGTAA
87071728 TGTTTTAATATATTGTAA
1 TGTTTTAATATATTGTAA
87071746 T
1 T
87071747 AAATTTTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (18 bp):
TGTTTTAATATATTGTAA
Found at i:87072038 original size:43 final size:43
Alignment explanation
Indices: 87071987--87072153 Score: 174
Period size: 43 Copynumber: 3.7 Consensus size: 43
87071977 TCCGAACCCA
*
87071987 TTGAGAGGTCCGAGTTCATTATGGATGCGAGCATTTGAGCTCT
1 TTGAGAGGTCCGAGTTCATTATGGATGCGAGCATTTGAGCTCG
* *
87072030 TTAAGAGGTCCGAGTTCA-TAGTGGATGCGATTCATGTAACATCCGAGCTCG
1 TTGAGAGGTCCGAGTTCATTA-TGGATGCGA-GCAT-T----T--GAGCTCG
* * *
87072081 TTGAGAGGCCCGAGTTCATTATGAATGCGAGCATTCGAGCTCG
1 TTGAGAGGTCCGAGTTCATTATGGATGCGAGCATTTGAGCTCG
* *
87072124 TTGAGAGGTCCGAGTTTATAATGGATGCGA
1 TTGAGAGGTCCGAGTTCATTATGGATGCGA
87072154 TTCACGTAAC
Statistics
Matches: 102, Mismatches: 12, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 59 0.58
44 3 0.03
45 1 0.01
49 2 0.02
50 3 0.03
51 30 0.29
52 2 0.02
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (43 bp):
TTGAGAGGTCCGAGTTCATTATGGATGCGAGCATTTGAGCTCG
Found at i:87072099 original size:51 final size:50
Alignment explanation
Indices: 87072023--87072201 Score: 203
Period size: 51 Copynumber: 3.7 Consensus size: 50
87072013 GCGAGCATTT
* *
87072023 GAGCTCTTTAAGAGGTCCGAGTTCA-TAGTGGATGCGATTCATGTAACATCC
1 GAGCTCGTTGAGAGGTCCGAGTTCATTA-TGGATGCGATTCA-GTAACATCC
* * *
87072074 GAGCTCGTTGAGAGGCCCGAGTTCATTATGAATGCG----AG---CATTC
1 GAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGCGATTCAGTAACATCC
* *
87072117 GAGCTCGTTGAGAGGTCCGAGTTTATAATGGATGCGATTCACGTAACATCC
1 GAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGCGATTCA-GTAACATCC
*
87072168 GAGCTCATTGAGAGGTCCGAGTTCATTATGGATG
1 GAGCTCGTTGAGAGGTCCGAGTTCATTATGGATG
87072202 TCTTACATGT
Statistics
Matches: 106, Mismatches: 13, Indels: 18
0.77 0.09 0.13
Matches are distributed among these distances:
43 36 0.34
46 1 0.01
47 2 0.02
48 1 0.01
51 64 0.60
52 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (50 bp):
GAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGCGATTCAGTAACATCC
Found at i:87072136 original size:94 final size:94
Alignment explanation
Indices: 87071975--87072197 Score: 347
Period size: 94 Copynumber: 2.4 Consensus size: 94
87071965 AGATATGTGG
* * * * *
87071975 CATCCGAACCCATTGAGAGGTCCGAGTTCATTATGGATGCGAGCATTTGAGCTCTTTAAGAGGTC
1 CATCCGAGCTCATTGAGAGGTCCGAGTTCATTATGAATGCGAGCATTCGAGCTCGTTAAGAGGTC
* *
87072040 CGAGTTCATAGTGGATGCGATTCATGTAA
66 CGAGTTCATAATGGATGCGATTCACGTAA
* * *
87072069 CATCCGAGCTCGTTGAGAGGCCCGAGTTCATTATGAATGCGAGCATTCGAGCTCGTTGAGAGGTC
1 CATCCGAGCTCATTGAGAGGTCCGAGTTCATTATGAATGCGAGCATTCGAGCTCGTTAAGAGGTC
*
87072134 CGAGTTTATAATGGATGCGATTCACGTAA
66 CGAGTTCATAATGGATGCGATTCACGTAA
87072163 CATCCGAGCTCATTGAGAGGTCCGAGTTCATTATG
1 CATCCGAGCTCATTGAGAGGTCCGAGTTCATTATG
87072198 GATGTCTTAC
Statistics
Matches: 116, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
94 116 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (94 bp):
CATCCGAGCTCATTGAGAGGTCCGAGTTCATTATGAATGCGAGCATTCGAGCTCGTTAAGAGGTC
CGAGTTCATAATGGATGCGATTCACGTAA
Found at i:87077144 original size:26 final size:26
Alignment explanation
Indices: 87077108--87077184 Score: 77
Period size: 27 Copynumber: 3.0 Consensus size: 26
87077098 AATGAGACTG
* *
87077108 GTGCCACCTATTAGATAAGGTCACCA
1 GTGCCGCCTATCAGATAAGGTCACCA
* *
87077134 GTGCCGCCTATCAGATAGGGGTCACTA
1 GTGCCGCCTATCAGATA-AGGTCACCA
**
87077161 GTGTTGCCTATCAGAT-AGG-CACCA
1 GTGCCGCCTATCAGATAAGGTCACCA
87077185 TACCTACCAT
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
24 4 0.10
25 2 0.05
26 15 0.36
27 21 0.50
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.23
Consensus pattern (26 bp):
GTGCCGCCTATCAGATAAGGTCACCA
Found at i:87084373 original size:26 final size:25
Alignment explanation
Indices: 87084344--87084414 Score: 72
Period size: 26 Copynumber: 2.7 Consensus size: 25
87084334 TATTTTAAAT
87084344 TTTTATTCTAATTTAGTATATT-GGTA
1 TTTTATT-TAATTTAGTAT-TTAGGTA
* * *
87084370 TTTTTTATTAATTTAGTATTTAAGTTT
1 TTTTAT-TTAATTTAGTATTT-AGGTA
87084397 TTTTATTTAATTTAGTAT
1 TTTTATTTAATTTAGTAT
87084415 CTAAACTTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
25 2 0.05
26 28 0.74
27 8 0.21
ACGTcount: A:0.27, C:0.01, G:0.08, T:0.63
Consensus pattern (25 bp):
TTTTATTTAATTTAGTATTTAGGTA
Found at i:87088431 original size:41 final size:42
Alignment explanation
Indices: 87088380--87088460 Score: 112
Period size: 41 Copynumber: 2.0 Consensus size: 42
87088370 AGTTCTTATT
**
87088380 TTTTTCAATTTTTAAAAAAAATATATTTTT-AAACTTTTATGA
1 TTTTTCAATTTGAAAAAAAAATA-ATTTTTGAAACTTTTATGA
*
87088422 TTTTT-AATTTGAAAAAAAAATAATTTTTGATACTTTTAT
1 TTTTTCAATTTGAAAAAAAAATAATTTTTGAAACTTTTAT
87088461 TTGTATTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
40 6 0.17
41 24 0.69
42 5 0.14
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.52
Consensus pattern (42 bp):
TTTTTCAATTTGAAAAAAAAATAATTTTTGAAACTTTTATGA
Found at i:87089367 original size:32 final size:33
Alignment explanation
Indices: 87089293--87089357 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
87089283 GTGGCCGACA
87089293 CCACTTTTTGATTTTAAAACAAAAAAAAATGGT
1 CCACTTTTTGATTTTAAAACAAAAAAAAATGGT
87089326 CCACTTTTTGATTTTAAAAC-AAAAAAAATGGT
1 CCACTTTTTGATTTTAAAACAAAAAAAAATGGT
87089358 TTTGTTTTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 12 0.38
33 20 0.62
ACGTcount: A:0.45, C:0.12, G:0.09, T:0.34
Consensus pattern (33 bp):
CCACTTTTTGATTTTAAAACAAAAAAAAATGGT
Found at i:87089405 original size:48 final size:48
Alignment explanation
Indices: 87089346--87089448 Score: 152
Period size: 48 Copynumber: 2.1 Consensus size: 48
87089336 ATTTTAAAAC
** * * *
87089346 AAAAAAAATGGTTTTGTTTTTGTGGTGGCCAACACCATTTTTTTATTT
1 AAAAAAAATGGTTTTGGCTTTGTAGTGGCCAACACAACTTTTTTATTT
*
87089394 AAAAAAAATGGTTTTGGCTTTGTAGTGGCCGACACAACTTTTTTATTT
1 AAAAAAAATGGTTTTGGCTTTGTAGTGGCCAACACAACTTTTTTATTT
87089442 AAAAAAA
1 AAAAAAA
87089449 TATTTTTTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.40
Consensus pattern (48 bp):
AAAAAAAATGGTTTTGGCTTTGTAGTGGCCAACACAACTTTTTTATTT
Found at i:87090374 original size:16 final size:15
Alignment explanation
Indices: 87090353--87090391 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
87090343 TCCTTCCTTC
87090353 CTTTTTTTTGTTCTTT
1 CTTTTTTTTGTT-TTT
*
87090369 CTTTTTGTTGTTTTT
1 CTTTTTTTTGTTTTT
*
87090384 ATTTTTTT
1 CTTTTTTT
87090392 CATTTTTTTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.03, C:0.08, G:0.08, T:0.82
Consensus pattern (15 bp):
CTTTTTTTTGTTTTT
Found at i:87090388 original size:27 final size:26
Alignment explanation
Indices: 87090354--87090418 Score: 62
Period size: 27 Copynumber: 2.5 Consensus size: 26
87090344 CCTTCCTTCC
*
87090354 TTTT-TTTTGTTC-TTTCTTTTTGTTGT
1 TTTTATTTTGTTCATTT-TTTTCGTT-T
*
87090380 TTTTATTTTTTTCATTTTTTTCGTTT
1 TTTTATTTTGTTCATTTTTTTCGTTT
*
87090406 TGATTATTTTGTT
1 T-TTTATTTTGTT
87090419 AACCGGAAGT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
26 6 0.19
27 23 0.72
28 3 0.09
ACGTcount: A:0.06, C:0.06, G:0.09, T:0.78
Consensus pattern (26 bp):
TTTTATTTTGTTCATTTTTTTCGTTT
Found at i:87090397 original size:24 final size:23
Alignment explanation
Indices: 87090366--87090415 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
87090356 TTTTTTGTTC
* *
87090366 TTTCTTTTTGTT-GTTTTTATTTT
1 TTTCTTTTT-TTCGTTTTGATTAT
87090389 TTTCATTTTTTTCGTTTTGATTAT
1 TTTC-TTTTTTTCGTTTTGATTAT
87090413 TTT
1 TTT
87090416 GTTAACCGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 6 0.26
24 17 0.74
ACGTcount: A:0.08, C:0.06, G:0.08, T:0.78
Consensus pattern (23 bp):
TTTCTTTTTTTCGTTTTGATTAT
Found at i:87097590 original size:26 final size:24
Alignment explanation
Indices: 87097557--87097631 Score: 73
Period size: 26 Copynumber: 3.0 Consensus size: 24
87097547 CTTCTTCTTC
87097557 CTTCTTTTTTTTTTTAATTTTTGTT
1 CTTCTTTTTTTTTTTAATTTTT-TT
87097582 CTTTCTTTTTGTCGTTTTT-ATTTTTTT
1 C-TTCTTTTT-T--TTTTTAATTTTTTT
* *
87097609 CTTC-TTTTTGTTTTAATTATTTT
1 CTTCTTTTTTTTTTTAATTTTTTT
87097632 GTTAACCGAA
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
22 4 0.09
23 7 0.16
24 1 0.02
25 5 0.12
26 11 0.26
27 4 0.09
28 6 0.14
29 5 0.12
ACGTcount: A:0.08, C:0.09, G:0.05, T:0.77
Consensus pattern (24 bp):
CTTCTTTTTTTTTTTAATTTTTTT
Found at i:87097621 original size:23 final size:23
Alignment explanation
Indices: 87097557--87097631 Score: 69
Period size: 23 Copynumber: 3.0 Consensus size: 23
87097547 CTTCTTCTTC
*
87097557 CTTCTTTTTTTTTTTAATTTTTGTT
1 CTTCTTTTTGTTTTT-ATTTTT-TT
87097582 CTTTCTTTTTGTCGTTTTTATTTTTTT
1 C-TTC-TTTT-T-GTTTTTATTTTTTT
* *
87097609 CTTCTTTTTGTTTTAATTATTTT
1 CTTCTTTTTGTTTTTATTTTTTT
87097632 GTTAACCGAA
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
23 12 0.28
24 1 0.02
25 5 0.12
26 6 0.14
27 7 0.16
28 7 0.16
29 5 0.12
ACGTcount: A:0.08, C:0.09, G:0.05, T:0.77
Consensus pattern (23 bp):
CTTCTTTTTGTTTTTATTTTTTT
Found at i:87099810 original size:49 final size:49
Alignment explanation
Indices: 87099644--87099868 Score: 324
Period size: 49 Copynumber: 4.5 Consensus size: 49
87099634 TGAGGTCGCA
* * * * *
87099644 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCACG
* * **
87099695 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACG
87099745 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
*
87099794 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
*
87099843 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
87099869 TGCGTACCAG
Statistics
Matches: 159, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
49 81 0.51
50 45 0.28
51 33 0.21
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
Found at i:87099824 original size:99 final size:100
Alignment explanation
Indices: 87099637--87099876 Score: 340
Period size: 99 Copynumber: 2.4 Consensus size: 100
87099627 TCTATTGTGA
* *
87099637 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTAG
* **
87099702 TACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
66 TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
87099737 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCACGTGTGTA
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTA
*
87099800 GTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
65 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
87099836 GGTCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACC
87099877 AGATAGCTTT
Statistics
Matches: 124, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
98 37 0.30
99 45 0.36
100 1 0.01
101 41 0.33
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (100 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTAG
TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:87111885 original size:43 final size:43
Alignment explanation
Indices: 87111832--87111916 Score: 134
Period size: 43 Copynumber: 2.0 Consensus size: 43
87111822 CTAAGAAAGT
* *
87111832 AAAAAAAATTGATTATATATTAATGAAAAGCATCAATATTTTC
1 AAAAAAAATTGATTATATATTAATAAAAAACATCAATATTTTC
* *
87111875 AAAACAAATTGATTATATATTAATAAAAAATATCAATATTTT
1 AAAAAAAATTGATTATATATTAATAAAAAACATCAATATTTT
87111917 GATTTACATT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.53, C:0.06, G:0.05, T:0.36
Consensus pattern (43 bp):
AAAAAAAATTGATTATATATTAATAAAAAACATCAATATTTTC
Found at i:87113812 original size:30 final size:30
Alignment explanation
Indices: 87113776--87113838 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
87113766 ACTTAACAAG
87113776 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
* *
87113806 CAAATGTCTTTAAAATACTAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
87113836 CAA
1 CAA
87113839 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.56, C:0.14, G:0.03, T:0.27
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAACAAAATTAA
Found at i:87115010 original size:23 final size:22
Alignment explanation
Indices: 87114984--87115057 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 22
87114974 GCTTTTTGTG
*
87114984 TTGTCTCACTGTTGTTTTTAATA
1 TTGT-TCACTATTGTTTTTAATA
* *
87115007 TTGTTCCACTATTGCTTTTAATG
1 TTGTT-CACTATTGTTTTTAATA
* **
87115030 TTATTTCACTACCGTTTTTAATA
1 TT-GTTCACTATTGTTTTTAATA
87115053 TTGTT
1 TTGTT
87115058 TGGATATAGT
Statistics
Matches: 40, Mismatches: 9, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
22 3 0.08
23 35 0.88
24 2 0.05
ACGTcount: A:0.19, C:0.15, G:0.11, T:0.55
Consensus pattern (22 bp):
TTGTTCACTATTGTTTTTAATA
Found at i:87118091 original size:18 final size:18
Alignment explanation
Indices: 87118068--87118115 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
87118058 AAAATGTGAG
* *
87118068 AAATGATGTTCGCATTTT
1 AAATGATGTTCACATTTC
87118086 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTC
87118104 AAATGATGTTCA
1 AAATGATGTTCA
87118116 AATTGATGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (18 bp):
AAATGATGTTCACATTTC
Found at i:87121971 original size:72 final size:71
Alignment explanation
Indices: 87121871--87122042 Score: 229
Period size: 72 Copynumber: 2.4 Consensus size: 71
87121861 AACAAAAATC
* * * *
87121871 CTAAACTAGTTTTATCAATAGTTATTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTA
1 CTAAATTACTTTTATCAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACTTA
87121936 TCTAT-
66 TCTATA
* * * *
87121941 GTGTAATCTACTTTTATTAATAGTTGTTTATGTTTGGTCTTTGGTTATTGAATTTATGTTCTACT
1 CT-AAAT-TACTTTTATCAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACT
*
87122006 TATTTATA
64 TATCTATA
*
87122014 CTAAATTAGTTTTATCAATAGTTGTTTAT
1 CTAAATTACTTTTATCAATAGTTGTTTAT
87122043 ATATGATTTT
Statistics
Matches: 86, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
70 1 0.01
71 23 0.27
72 61 0.71
73 1 0.01
ACGTcount: A:0.25, C:0.08, G:0.13, T:0.54
Consensus pattern (71 bp):
CTAAATTACTTTTATCAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACTTA
TCTATA
Found at i:87124082 original size:13 final size:13
Alignment explanation
Indices: 87124064--87124124 Score: 86
Period size: 13 Copynumber: 4.7 Consensus size: 13
87124054 CTTAAAATTT
*
87124064 TCAAAAGTACTTC
1 TCAAAAGCACTTC
87124077 TCAAAAGCACTTC
1 TCAAAAGCACTTC
*
87124090 TCAAAAGCACTTT
1 TCAAAAGCACTTC
* *
87124103 TCCACAGCACTTC
1 TCAAAAGCACTTC
87124116 TCAAAAGCA
1 TCAAAAGCA
87124125 TTGCCAAACT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 41 1.00
ACGTcount: A:0.38, C:0.30, G:0.08, T:0.25
Consensus pattern (13 bp):
TCAAAAGCACTTC
Found at i:87124831 original size:21 final size:21
Alignment explanation
Indices: 87124807--87124847 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
87124797 GAACCAAACC
*
87124807 CTAAAACAACCTAAACCGACA
1 CTAAAACAACCTAAAACGACA
* *
87124828 CTAATACAATCTAAAACGAC
1 CTAAAACAACCTAAAACGAC
87124848 CCAAACCAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.51, C:0.29, G:0.05, T:0.15
Consensus pattern (21 bp):
CTAAAACAACCTAAAACGACA
Found at i:87126043 original size:14 final size:14
Alignment explanation
Indices: 87126024--87126090 Score: 62
Period size: 14 Copynumber: 4.7 Consensus size: 14
87126014 GTTTGCAGGT
*
87126024 AAAATGTTTTCCGG
1 AAAATGATTTCCGG
*
87126038 AAAATGATTTCTGG
1 AAAATGATTTCCGG
* * *
87126052 AAAATAATTTCTTGA
1 AAAATGATTTC-CGG
* *
87126067 AAAATAATTTCTGG
1 AAAATGATTTCCGG
87126081 AAAATGATTT
1 AAAATGATTT
87126091 ATTTTTCTGG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
14 33 0.72
15 13 0.28
ACGTcount: A:0.40, C:0.07, G:0.15, T:0.37
Consensus pattern (14 bp):
AAAATGATTTCCGG
Found at i:87126072 original size:15 final size:15
Alignment explanation
Indices: 87126038--87126084 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
87126028 TGTTTTCCGG
* *
87126038 AAAATGATTTC-TGG
1 AAAATAATTTCTTGA
87126052 AAAATAATTTCTTGA
1 AAAATAATTTCTTGA
*
87126067 AAAATAATTTCTGGA
1 AAAATAATTTCTTGA
87126082 AAA
1 AAA
87126085 TGATTTATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
14 10 0.34
15 19 0.66
ACGTcount: A:0.47, C:0.06, G:0.13, T:0.34
Consensus pattern (15 bp):
AAAATAATTTCTTGA
Found at i:87127927 original size:142 final size:142
Alignment explanation
Indices: 87127682--87127965 Score: 550
Period size: 142 Copynumber: 2.0 Consensus size: 142
87127672 AACTCCCCTC
87127682 GAATTTGAAAGGTCTGTTCTATCTTCTGTTTCTGCTTGCTTAGCAAATTCACCTTCTAAATCAAG
1 GAATTTGAAAGGTCTGTTCTATCTTCTGTTTCTGCTTGCTTAGCAAATTCACCTTCTAAATCAAG
87127747 AAAGTCATCAGGATTAATTTCGGCAATCAGGTCTGAATACGCATCTATTAAGCCTTGATCAAAAT
66 AAAGTCATCAGGATTAATTTCGGCAATCAGGTCTGAATACGCATCTATTAAGCCTTGATCAAAAT
87127812 CAAACTCCATGT
131 CAAACTCCATGT
*
87127824 GAATTTGAAAGGTCTGTTCTATCTTCTGTTTCTGGTTGCTTAGCAAATTCACCTTCTAAATCAAG
1 GAATTTGAAAGGTCTGTTCTATCTTCTGTTTCTGCTTGCTTAGCAAATTCACCTTCTAAATCAAG
*
87127889 AAAGTCATCTGGATTAATTTCGGCAATCAGGTCTGAATACGCATCTATTAAGCCTTGATCAAAAT
66 AAAGTCATCAGGATTAATTTCGGCAATCAGGTCTGAATACGCATCTATTAAGCCTTGATCAAAAT
87127954 CAAACTCCATGT
131 CAAACTCCATGT
87127966 CATCAAATAA
Statistics
Matches: 140, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
142 140 1.00
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (142 bp):
GAATTTGAAAGGTCTGTTCTATCTTCTGTTTCTGCTTGCTTAGCAAATTCACCTTCTAAATCAAG
AAAGTCATCAGGATTAATTTCGGCAATCAGGTCTGAATACGCATCTATTAAGCCTTGATCAAAAT
CAAACTCCATGT
Found at i:87133119 original size:13 final size:13
Alignment explanation
Indices: 87133103--87133133 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
87133093 CAGAGCACTG
87133103 TTTCTCTTCCCGA
1 TTTCTCTTCCCGA
87133116 TTTCTCTTCCCGA
1 TTTCTCTTCCCGA
87133129 TTTCT
1 TTTCT
87133134 TGCACCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.06, C:0.35, G:0.06, T:0.52
Consensus pattern (13 bp):
TTTCTCTTCCCGA
Found at i:87135271 original size:20 final size:20
Alignment explanation
Indices: 87135235--87135273 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
87135225 AATTTTTTAA
*
87135235 AAATATATTTATAATATAAT
1 AAATATATTAATAATATAAT
87135255 AAATATA-TAATACATATAA
1 AAATATATTAATA-ATATAA
87135274 ATTTAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (20 bp):
AAATATATTAATAATATAAT
Found at i:87136805 original size:20 final size:20
Alignment explanation
Indices: 87136759--87136806 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
87136749 CAGTAGTCCA
*
87136759 ACCGGTACCATAAAACCGAC
1 ACCGGTTCCATAAAACCGAC
**
87136779 AGTGGTTCCATAAAACCGAC
1 ACCGGTTCCATAAAACCGAC
87136799 ACCGGTTC
1 ACCGGTTC
87136807 AACTAGTAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.33, C:0.31, G:0.19, T:0.17
Consensus pattern (20 bp):
ACCGGTTCCATAAAACCGAC
Found at i:87141626 original size:26 final size:26
Alignment explanation
Indices: 87141597--87141653 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
87141587 GAATTTGAAT
87141597 TTTTATATATTTTTA-AATCTTTTTTA
1 TTTTATATATTTTTATAAT-TTTTTTA
* *
87141623 TTTTTTATTTTTTTATAATTTTTTTA
1 TTTTATATATTTTTATAATTTTTTTA
87141649 TTTTA
1 TTTTA
87141654 AAAAAATTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (26 bp):
TTTTATATATTTTTATAATTTTTTTA
Found at i:87141646 original size:10 final size:9
Alignment explanation
Indices: 87141596--87141652 Score: 57
Period size: 10 Copynumber: 6.3 Consensus size: 9
87141586 TGAATTTGAA
87141596 TTTTTATAT
1 TTTTTATAT
*
87141605 ATTTTTAAAT
1 -TTTTTATAT
87141615 CTTTTT-TAT
1 -TTTTTATAT
87141624 TTTTTAT-T
1 TTTTTATAT
87141632 TTTTTATAAT
1 TTTTTAT-AT
87141642 TTTTT-TAT
1 TTTTTATAT
87141650 TTT
1 TTT
87141653 AAAAAAATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
8 18 0.44
9 4 0.10
10 19 0.46
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTTTATAT
Found at i:87147417 original size:129 final size:127
Alignment explanation
Indices: 87147230--87147477 Score: 356
Period size: 130 Copynumber: 1.9 Consensus size: 127
87147220 TCTTGGATTC
*
87147230 CCAAACGTTGAACATTGCCTTGTTTTAGAATTTAGAAAACATGAGTGAAATGCTAAAGGAATATT
1 CCAAACGTTGAACATTGCCTTGTTTTAGAATTTAGAAAACATGAGTGAAATGCCAAAGGAATATT
* * *
87147295 CAATTA-TTTGAACAAACGGGAAATTACAACCCAGCACAATAGGGTACGATTCCCCGAAATT
66 CAATCATTTTGAACAAACGAGAAATTACAACCCAGCACAATAGGGCACGATTCCCCGAAATT
* ** *
87147356 CCAAAC-TTCGAACGTTGCCTTCGTTTTAAAGAATTTTTAAAACATGAGTGAAATTCCAAAGGAA
1 CCAAACGTT-GAACATTGCCTT-GTTTT--AGAATTTAGAAAACATGAGTGAAATGCCAAAGGAA
* *
87147420 TATTCGATCATTTTGAACAAACGAGAAATTACAACCCAGCACGATAGGGCACGATTCC
62 TATTCAATCATTTTGAACAAACGAGAAATTACAACCCAGCACAATAGGGCACGATTCC
87147478 TTAAATTTCT
Statistics
Matches: 107, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
125 2 0.02
126 17 0.16
127 5 0.05
129 39 0.36
130 44 0.41
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (127 bp):
CCAAACGTTGAACATTGCCTTGTTTTAGAATTTAGAAAACATGAGTGAAATGCCAAAGGAATATT
CAATCATTTTGAACAAACGAGAAATTACAACCCAGCACAATAGGGCACGATTCCCCGAAATT
Found at i:87147512 original size:130 final size:129
Alignment explanation
Indices: 87147240--87147514 Score: 333
Period size: 130 Copynumber: 2.1 Consensus size: 129
87147230 CCAAACGTTG
* * *
87147240 AACATTGCC-TTGTTTT--AGAATTTAGAAAACATGAGTGAAATGCTAAAGGAATATTCAATTAT
1 AACATCGCCTTTGTTTTAAAGAATTTAGAAAACATGAGTGAAATGCCAAAGGAATATTCAATCAT
* * * *
87147302 TTGAACAAACGGGAAATTACAACCCAGCACAATAGGGTACGATTCCCCGAAATTCCAAACTTCG
66 TTGAACAAACGAGAAATTACAACCCAGCACAATAGGGCACGATTCCCCGAAATTCCAAACATCA
* * * ** * *
87147366 AACGTTGCCTTCGTTTTAAAGAATTTTTAAAACATGAGTGAAATTCCAAAGGAATATTCGATCAT
1 AACATCGCCTTTGTTTTAAAGAATTTAGAAAACATGAGTGAAATGCCAAAGGAATATTCAATCA-
* ** *
87147431 TTTGAACAAACGAGAAATTACAACCCAGCACGATAGGGCACGATT-CCTTAAATTTCTAAACATC
65 TTTGAACAAACGAGAAATTACAACCCAGCACAATAGGGCACGATTCCCCGAAA-TTCCAAACATC
87147495 A
129 A
*
87147496 AACATCGCTTTTGTTTTAA
1 AACATCGCCTTTGTTTTAA
87147515 GGTTTAGAAA
Statistics
Matches: 124, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
126 8 0.06
127 6 0.05
129 44 0.35
130 66 0.53
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (129 bp):
AACATCGCCTTTGTTTTAAAGAATTTAGAAAACATGAGTGAAATGCCAAAGGAATATTCAATCAT
TTGAACAAACGAGAAATTACAACCCAGCACAATAGGGCACGATTCCCCGAAATTCCAAACATCA
Found at i:87148572 original size:3 final size:3
Alignment explanation
Indices: 87148561--87148654 Score: 68
Period size: 3 Copynumber: 31.3 Consensus size: 3
87148551 TGATGATAGC
* * *
87148561 AAT AGT AAT AAT -AT AAT AAT AA- AGT AGAA AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT
* * * * *
87148605 AAT AAT ACGTT AAT AAG AAT AAT AAT AGT -AT ATT AAT AAT AAC AAT
1 AAT AAT A--AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
87148651 AAT A
1 AAT A
87148655 GAAGGTAATG
Statistics
Matches: 69, Mismatches: 16, Indels: 12
0.71 0.16 0.12
Matches are distributed among these distances:
2 4 0.06
3 62 0.90
4 1 0.01
5 2 0.03
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:87148619 original size:26 final size:25
Alignment explanation
Indices: 87148561--87148654 Score: 90
Period size: 23 Copynumber: 3.9 Consensus size: 25
87148551 TGATGATAGC
87148561 AATAG-TAATAAT-ATAATAATAA-
1 AATAGTTAATAATAATAATAATAAT
* **
87148583 AGTAGAAAATAATAATAATAATAAT
1 AATAGTTAATAATAATAATAATAAT
* *
87148608 AATACGTTAATAAGAATAATAATAGT
1 AATA-GTTAATAATAATAATAATAAT
*
87148634 -ATA-TTAATAATAACAATAATA
1 AATAGTTAATAATAATAATAATA
87148655 GAAGGTAATG
Statistics
Matches: 59, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
22 4 0.07
23 22 0.37
24 10 0.17
25 6 0.10
26 17 0.29
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (25 bp):
AATAGTTAATAATAATAATAATAAT
Found at i:87148620 original size:20 final size:20
Alignment explanation
Indices: 87148594--87148651 Score: 73
Period size: 20 Copynumber: 2.9 Consensus size: 20
87148584 GTAGAAAATA
87148594 ATAATAATAATAATAATACGT
1 ATAATAATAATAATAATA-GT
*
87148615 -TAATAAGAATAATAATAGT
1 ATAATAATAATAATAATAGT
* *
87148634 ATATTAATAATAACAATA
1 ATAATAATAATAATAATA
87148652 ATAGAAGGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
19 2 0.06
20 30 0.94
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.33
Consensus pattern (20 bp):
ATAATAATAATAATAATAGT
Found at i:87148742 original size:14 final size:15
Alignment explanation
Indices: 87148723--87148756 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
87148713 ACGTAAATGG
87148723 TAATAGAAA-AGCAA
1 TAATAGAAACAGCAA
*
87148737 TAATAGAAACAGTAA
1 TAATAGAAACAGCAA
87148752 TAATA
1 TAATA
87148757 ATAAAAGTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.62, C:0.06, G:0.12, T:0.21
Consensus pattern (15 bp):
TAATAGAAACAGCAA
Found at i:87148765 original size:15 final size:15
Alignment explanation
Indices: 87148729--87148775 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
87148719 ATGGTAATAG
*
87148729 AAAAGCAATAATAGA-
1 AAAAGTAATAATA-AT
*
87148744 AACAGTAATAATAAT
1 AAAAGTAATAATAAT
*
87148759 AAAAGTAATAGTAAT
1 AAAAGTAATAATAAT
87148774 AA
1 AA
87148776 TAATAGTGAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 1 0.04
15 26 0.96
ACGTcount: A:0.64, C:0.04, G:0.11, T:0.21
Consensus pattern (15 bp):
AAAAGTAATAATAAT
Found at i:87148779 original size:12 final size:12
Alignment explanation
Indices: 87148749--87148790 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
87148739 ATAGAAACAG
*
87148749 TAATAATAATAA
1 TAATAATAGTAA
87148761 -AAGTAATAGTAA
1 TAA-TAATAGTAA
*
87148773 TAATAATAGTGA
1 TAATAATAGTAA
87148785 TAATAA
1 TAATAA
87148791 AAATCATGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
11 2 0.08
12 22 0.85
13 2 0.08
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.31
Consensus pattern (12 bp):
TAATAATAGTAA
Found at i:87148788 original size:15 final size:15
Alignment explanation
Indices: 87148770--87148808 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
87148760 AAAGTAATAG
87148770 TAATAATAAT-AGTGA
1 TAATAATAATCA-TGA
*
87148785 TAATAAAAATCATGA
1 TAATAATAATCATGA
87148800 TAATAATAA
1 TAATAATAA
87148809 ATATAATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 20 0.95
16 1 0.05
ACGTcount: A:0.59, C:0.03, G:0.08, T:0.31
Consensus pattern (15 bp):
TAATAATAATCATGA
Found at i:87151098 original size:40 final size:40
Alignment explanation
Indices: 87151015--87151138 Score: 137
Period size: 40 Copynumber: 3.1 Consensus size: 40
87151005 GTTTGAAAAG
* * *
87151015 AAAACGGCACTATAAATTA-AGCATTAGCGGCGCTTTCCT-A
1 AAAACGCCACTATAGA-TAGAGCATTAGCGGCGCTTT-TTAA
*
87151055 AAAACATCC-CTATAGATAGAGCATTAGCGGCGCTTTTTAA
1 AAAAC-GCCACTATAGATAGAGCATTAGCGGCGCTTTTTAA
* * *
87151095 AAAACGCCACTATAGGTCGACCATTAGCGGCGCTTTTTAA
1 AAAACGCCACTATAGATAGAGCATTAGCGGCGCTTTTTAA
87151135 AAAA
1 AAAA
87151139 TGTCGCAAAA
Statistics
Matches: 72, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
39 5 0.07
40 66 0.92
41 1 0.01
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (40 bp):
AAAACGCCACTATAGATAGAGCATTAGCGGCGCTTTTTAA
Found at i:87151264 original size:40 final size:40
Alignment explanation
Indices: 87151200--87151295 Score: 131
Period size: 40 Copynumber: 2.4 Consensus size: 40
87151190 ACGCTTTCTA
* *
87151200 AAAAATGCCGCTATAAATCAAGCATTAGTGGCGCCTTTTG
1 AAAAACGCCGCTATAGATCAAGCATTAGTGGCGCCTTTTG
* * *
87151240 ATAAACGCCGCTATAGAT-ATAGCATTAGTGGCGCTTTTTT
1 AAAAACGCCGCTATAGATCA-AGCATTAGTGGCGCCTTTTG
87151280 AAAAACGCCGCTATAG
1 AAAAACGCCGCTATAG
87151296 GTCGACTATT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
39 1 0.02
40 48 0.98
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (40 bp):
AAAAACGCCGCTATAGATCAAGCATTAGTGGCGCCTTTTG
Found at i:87151307 original size:40 final size:40
Alignment explanation
Indices: 87151191--87151324 Score: 128
Period size: 40 Copynumber: 3.4 Consensus size: 40
87151181 GCTATAGCGA
* * * *
87151191 CGCTTTCTAAAAAATGCCGCTATAAATCA-AGCATTAGTGG
1 CGCTTTTTTAAAAACGCCGCTATAGAT-AGAGCATTAGTGG
* * * *
87151231 CGCCTTTTGATAAACGCCGCTATAGATATAGCATTAGTGG
1 CGCTTTTTTAAAAACGCCGCTATAGATAGAGCATTAGTGG
* * *
87151271 CGCTTTTTTAAAAACGCCGCTATAGGTCGA-CTATTAGAGG
1 CGCTTTTTTAAAAACGCCGCTATAGATAGAGC-ATTAGTGG
*
87151311 CGGTTTTTTAAAAA
1 CGCTTTTTTAAAAA
87151325 ATGCTGCAAA
Statistics
Matches: 78, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
39 2 0.03
40 76 0.97
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.31
Consensus pattern (40 bp):
CGCTTTTTTAAAAACGCCGCTATAGATAGAGCATTAGTGG
Found at i:87151422 original size:196 final size:185
Alignment explanation
Indices: 87151015--87151514 Score: 537
Period size: 196 Copynumber: 2.6 Consensus size: 185
87151005 GTTTGAAAAG
* * * * *
87151015 AAAACGGCACTATAAATTAAGCATTAGCGGCG-CTTTCCT-AAAAACATCC-CTATAGATAGAGC
1 AAAACGCCGCTATAAATCAAGCATTAGTGGCGCCTTT--TAAAAAAC-GCCGCTATAGATAGAGC
* * * *
87151077 ATTAGCGGCGCTTTTTAAAAAACGCCACTATAGGTCGACCATTAGCGGCGCTTTTTAAAAAATGT
63 ATTAGCGGCGCTTTTTTAAAAACGCCGCTATAGGTCGA-CATTAGAGGCGTTTTTTAAAAAATGT
*
87151142 CGCAAAAAAATAAACGTCGTTTTATGCTGACCTTTAGTGGCTATAGCGACGCTTTCTAA
127 CGCAAAAAAATAAACGTCGTTTTATGCTAACCTTTAGTGGCTATAGCGACGCTTTCTAA
* * * *
87151201 AAAATGCCGCTATAAATCAAGCATTAGTGGCGCCTTTTGATAAACGCCGCTATAGATATAGCATT
1 AAAACGCCGCTATAAATCAAGCATTAGTGGCGCCTTTTAAAAAACGCCGCTATAGATAGAGCATT
*
87151266 AGTGGCGCTTTTTTAAAAACGCCGCTATAGGTCGACTATTAGAGGCGGTTTTTTAAAAAATG-CT
66 AGCGGCGCTTTTTTAAAAACGCCGCTATAGGTCGAC-ATTAGAGGC-GTTTTTTAAAAAATGTC-
*
87151330 GCAAAAAAACTAAACACAACGACGTCGTTTTATGCTAACCTTTAGTGGCTTTAGC-ATCGCTTTA
128 GCAAAAAAA-T------AA--ACGTCGTTTTATGCTAACCTTTAGTGGCTATAGCGA-CGCTTT-
*
87151394 C-GA
182 CTAA
* * * * *
87151397 AAAACGCCGCTATAGATCAAGCATTAGTGGCGCTTTTTAAAAAACGCTGCTATATG-TCGACCAT
1 AAAACGCCGCTATAAATCAAGCATTAGTGGCGCCTTTTAAAAAACGCCGCTATA-GATAGAGCAT
* * *
87151461 TAGCGGCGCTTTTTTGAAAAACGCCGCTGTAGATCGAGCATTAGTGGCGTTTTT
65 TAGCGGCGCTTTTTT-AAAAACGCCGCTATAGGTCGA-CATTAGAGGCGTTTTT
87151515 AAAGAAAACC
Statistics
Matches: 265, Mismatches: 29, Indels: 30
0.82 0.09 0.09
Matches are distributed among these distances:
185 4 0.02
186 88 0.33
187 27 0.10
188 1 0.00
194 2 0.01
195 1 0.00
196 112 0.42
197 29 0.11
198 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (185 bp):
AAAACGCCGCTATAAATCAAGCATTAGTGGCGCCTTTTAAAAAACGCCGCTATAGATAGAGCATT
AGCGGCGCTTTTTTAAAAACGCCGCTATAGGTCGACATTAGAGGCGTTTTTTAAAAAATGTCGCA
AAAAAATAAACGTCGTTTTATGCTAACCTTTAGTGGCTATAGCGACGCTTTCTAA
Found at i:87151503 original size:41 final size:41
Alignment explanation
Indices: 87151395--87151514 Score: 156
Period size: 40 Copynumber: 3.0 Consensus size: 41
87151385 ATCGCTTTAC
*
87151395 GAAAAACGCCGCTATAGATCAAGCATTAGTGGCGC-TTTTT
1 GAAAAACGCCGCTATAGATCGAGCATTAGTGGCGCTTTTTT
* * * *
87151435 AAAAAACGCTGCTATATG-TCGACCATTAGCGGCGCTTTTTT
1 GAAAAACGCCGCTATA-GATCGAGCATTAGTGGCGCTTTTTT
*
87151476 GAAAAACGCCGCTGTAGATCGAGCATTAGTGGCG-TTTTT
1 GAAAAACGCCGCTATAGATCGAGCATTAGTGGCGCTTTTT
87151515 AAAGAAAACC
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 34 0.51
41 33 0.49
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (41 bp):
GAAAAACGCCGCTATAGATCGAGCATTAGTGGCGCTTTTTT
Found at i:87151523 original size:41 final size:40
Alignment explanation
Indices: 87151396--87151517 Score: 158
Period size: 41 Copynumber: 3.0 Consensus size: 40
87151386 TCGCTTTACG
*
87151396 AAAAACGCCGCTATAGATCAAGCATTAGTGGCGCTTTTTA
1 AAAAACGCCGCTATAGATCGAGCATTAGTGGCGCTTTTTA
* * * *
87151436 AAAAACGCTGCTATATG-TCGACCATTAGCGGCGCTTTTTTG
1 AAAAACGCCGCTATA-GATCGAGCATTAGTGGCGC-TTTTTA
*
87151477 AAAAACGCCGCTGTAGATCGAGCATTAGTGGCG-TTTTTA
1 AAAAACGCCGCTATAGATCGAGCATTAGTGGCGCTTTTTA
87151516 AA
1 AA
87151518 GAAAACCCCG
Statistics
Matches: 69, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
39 7 0.10
40 29 0.42
41 33 0.48
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.29
Consensus pattern (40 bp):
AAAAACGCCGCTATAGATCGAGCATTAGTGGCGCTTTTTA
Found at i:87151944 original size:14 final size:14
Alignment explanation
Indices: 87151925--87151959 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
87151915 AAAGTTTAAG
87151925 GGGTTAGGGGTCAA
1 GGGTTAGGGGTCAA
*
87151939 GGGTTAAGGGTCAA
1 GGGTTAGGGGTCAA
87151953 GGGTTAG
1 GGGTTAG
87151960 ATGTTTATGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.23, C:0.06, G:0.49, T:0.23
Consensus pattern (14 bp):
GGGTTAGGGGTCAA
Found at i:87151998 original size:13 final size:13
Alignment explanation
Indices: 87151980--87152013 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
87151970 TTTTGAGTGG
*
87151980 AAGGTTTATGTTT
1 AAGGTTTATGTCT
87151993 AAGGTTTATGTCT
1 AAGGTTTATGTCT
*
87152006 AGGGTTTA
1 AAGGTTTA
87152014 AGGATATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.24, C:0.03, G:0.26, T:0.47
Consensus pattern (13 bp):
AAGGTTTATGTCT
Found at i:87152031 original size:18 final size:18
Alignment explanation
Indices: 87152008--87152050 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
87151998 TTATGTCTAG
*
87152008 GGTTTA-AGGATATTTTAA
1 GGTTTAGAGG-TACTTTAA
*
87152026 GGTTTAGAGGTACTTTAG
1 GGTTTAGAGGTACTTTAA
87152044 GGTTTAG
1 GGTTTAG
87152051 TGTTTAAGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 19 0.86
19 3 0.14
ACGTcount: A:0.26, C:0.02, G:0.30, T:0.42
Consensus pattern (18 bp):
GGTTTAGAGGTACTTTAA
Found at i:87152049 original size:7 final size:7
Alignment explanation
Indices: 87152039--87152086 Score: 60
Period size: 7 Copynumber: 6.7 Consensus size: 7
87152029 TTAGAGGTAC
87152039 TTTAGGG
1 TTTAGGG
*
87152046 TTTAGTG
1 TTTAGGG
*
87152053 TTTAAGG
1 TTTAGGG
*
87152060 TATAGGG
1 TTTAGGG
87152067 TTTAGAGG
1 TTTAG-GG
87152075 TTTAGGG
1 TTTAGGG
87152082 TTTAG
1 TTTAG
87152087 ATTAATTAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
7 27 0.79
8 7 0.21
ACGTcount: A:0.21, C:0.00, G:0.35, T:0.44
Consensus pattern (7 bp):
TTTAGGG
Found at i:87153003 original size:85 final size:84
Alignment explanation
Indices: 87152902--87153084 Score: 219
Period size: 84 Copynumber: 2.2 Consensus size: 84
87152892 AGCATATAAC
* **
87152902 TTTA-GGGCATTAGCGGCATTTATTTGCA-AAACGCCGCAAAAAAACATTATAGTTTAACT-AAA
1 TTTAGGGGCATTAGCGGCATTT-TGTAAATAAACGCCG-AAAAAAACATTATAGTTTAA-TAAAA
* *
87152964 ACGACATTGTTTTAATTTCAGA
63 ACGACATGGTTTTAATTGCAGA
* * * *
87152986 TTTAGGGGCATTAGCGGCGTTTTGTAAATAAACGCTGTAAAAAGCATTATAGTTTAATAAAAACG
1 TTTAGGGGCATTAGCGGCATTTTGTAAATAAACGCCGAAAAAAACATTATAGTTTAATAAAAACG
* *
87153051 ACGTGGTTTTAATTGGAGA
66 ACATGGTTTTAATTGCAGA
87153070 TTTAGGGGCATTAGC
1 TTTAGGGGCATTAGC
87153085 AAAAACGCCG
Statistics
Matches: 85, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
83 1 0.01
84 61 0.72
85 23 0.27
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.32
Consensus pattern (84 bp):
TTTAGGGGCATTAGCGGCATTTTGTAAATAAACGCCGAAAAAAACATTATAGTTTAATAAAAACG
ACATGGTTTTAATTGCAGA
Found at i:87153147 original size:71 final size:72
Alignment explanation
Indices: 87153015--87153154 Score: 203
Period size: 71 Copynumber: 2.0 Consensus size: 72
87153005 TTTTGTAAAT
* *
87153015 AAACGCTGTAAAAAGCATTATAGTTTAATAAAAACGACGTGGTTTTAATTGGAGATTTAGGGGCA
1 AAACGCCGTAAAAAGCATAATAGTTTAATAAAAACGACGTGGTTTTAATTGGAGATTTAGGGGCA
87153080 TTAGCAA
66 TTAGCAA
* * * *
87153087 AAACGCCGTAAAAATCATAATAGTTTACT-AAAAC-ATCGTTGTTTTAATTGGAGATTTAGGGGG
1 AAACGCCGTAAAAAGCATAATAGTTTAATAAAAACGA-CGTGGTTTTAATTGGAGATTTAGGGGC
87153150 ATTAG
65 ATTAG
87153155 TGGCGCTATG
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
70 1 0.02
71 35 0.57
72 25 0.41
ACGTcount: A:0.38, C:0.10, G:0.21, T:0.31
Consensus pattern (72 bp):
AAACGCCGTAAAAAGCATAATAGTTTAATAAAAACGACGTGGTTTTAATTGGAGATTTAGGGGCA
TTAGCAA
Found at i:87155451 original size:27 final size:27
Alignment explanation
Indices: 87155398--87155457 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
87155388 ATTTTGTTTA
* * *
87155398 CAAATTATTTTTAAATTTTTTGCTTTT
1 CAAAATATTTTTAAATTATATGCTTTT
*
87155425 GAAAATATTTTTAAATATATATG-TTTT
1 CAAAATATTTTTAAAT-TATATGCTTTT
87155452 CAAAAT
1 CAAAAT
87155458 TATGTGCTAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
27 23 0.85
28 4 0.15
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.53
Consensus pattern (27 bp):
CAAAATATTTTTAAATTATATGCTTTT
Found at i:87156071 original size:13 final size:14
Alignment explanation
Indices: 87156053--87156083 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
87156043 TTAACTTGTA
87156053 TTTAAA-GTTTTAT
1 TTTAAATGTTTTAT
87156066 TTTAAATGTTTTAT
1 TTTAAATGTTTTAT
87156080 TTTA
1 TTTA
87156084 TTTCACTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.35
14 11 0.65
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (14 bp):
TTTAAATGTTTTAT
Found at i:87156192 original size:9 final size:9
Alignment explanation
Indices: 87156178--87156394 Score: 93
Period size: 9 Copynumber: 24.8 Consensus size: 9
87156168 AAGTTCACTC
87156178 ACATAATTT
1 ACATAATTT
87156187 ACATAATTT
1 ACATAATTT
87156196 ACATAA--T
1 ACATAATTT
*
87156203 ACATAACTT
1 ACATAATTT
87156212 ACATAATTT
1 ACATAATTT
*
87156221 --A-AAGTT
1 ACATAATTT
87156227 -CA-AATTT
1 ACATAATTT
**
87156234 -CATAACCT
1 ACATAATTT
*
87156242 ATATAATTT
1 ACATAATTT
*
87156251 ACATAACTT
1 ACATAATTT
*
87156260 ACAT-A-GT
1 ACATAATTT
* * *
87156267 ACTTAACTA
1 ACATAATTT
87156276 ACATAATTT
1 ACATAATTT
*
87156285 AAAGATCAAATTT
1 --ACAT--AATTT
*
87156298 -CATAAATT
1 ACATAATTT
87156306 ACATAATTT
1 ACATAATTT
*
87156315 ACATAACTT
1 ACATAATTT
87156324 ACATAA--T
1 ACATAATTT
*
87156331 ACATAACTT
1 ACATAATTT
*
87156340 AAATAATTT
1 ACATAATTT
*
87156349 AAAGATCAAATTT
1 --ACAT--AATTT
*
87156362 -CATAACTT
1 ACATAATTT
*
87156370 ACACAATTT
1 ACATAATTT
*
87156379 ACATAACTT
1 ACATAATTT
87156388 ACATAAT
1 ACATAAT
87156395 ACATAAATAT
Statistics
Matches: 157, Mismatches: 32, Indels: 38
0.69 0.14 0.17
Matches are distributed among these distances:
6 4 0.03
7 26 0.17
8 13 0.08
9 94 0.60
10 4 0.03
11 6 0.04
13 10 0.06
ACGTcount: A:0.47, C:0.15, G:0.02, T:0.36
Consensus pattern (9 bp):
ACATAATTT
Found at i:87156207 original size:16 final size:16
Alignment explanation
Indices: 87156186--87156427 Score: 88
Period size: 16 Copynumber: 15.0 Consensus size: 16
87156176 TCACATAATT
*
87156186 TACATAATTTACATAA
1 TACATAACTTACATAA
87156202 TACATAACTTACATAA
1 TACATAACTTACATAA
** *
87156218 TTTA-AAGTT-CA-AA
1 TACATAACTTACATAA
* * *
87156231 TTTCATAACCTATATAA
1 -TACATAACTTACATAA
*
87156248 TTTACATAACTTACATAG
1 --TACATAACTTACATAA
* *
87156266 TACTTAACTAACATAA
1 TACATAACTTACATAA
** **
87156282 TTTA-AAGAT-CA-AA
1 TACATAACTTACATAA
* *
87156295 TTTCATAAATTACATAA
1 -TACATAACTTACATAA
87156312 TTTACATAACTTACATAA
1 --TACATAACTTACATAA
*
87156330 TACATAACTTAAATAA
1 TACATAACTTACATAA
** **
87156346 TTTA-AAGAT-CA-AA
1 TACATAACTTACATAA
* *
87156359 TTTCATAACTTACACAA
1 -TACATAACTTACATAA
87156376 TTTACATAACTTACATAA
1 --TACATAACTTACATAA
* * *
87156394 TACATAAATATATATCA
1 TACATAACT-TACATAA
87156411 TATCATAACTTACATAA
1 TA-CATAACTTACATAA
87156428 CTTAATTATA
Statistics
Matches: 166, Mismatches: 43, Indels: 33
0.69 0.18 0.14
Matches are distributed among these distances:
13 6 0.04
14 14 0.08
15 18 0.11
16 61 0.37
17 18 0.11
18 49 0.30
ACGTcount: A:0.48, C:0.15, G:0.02, T:0.36
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:87156254 original size:64 final size:64
Alignment explanation
Indices: 87156178--87156400 Score: 356
Period size: 64 Copynumber: 3.5 Consensus size: 64
87156168 AAGTTCACTC
* * *
87156178 ACATAATTTACATAATTTACATAATACATAACTTACATAATTTAAAGTTCAAATTTCATAACCT
1 ACATAATTTACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAACTT
* * * * *
87156242 ATATAATTTACATAACTTACATAGTACTTAACTAACATAATTTAAAGATCAAATTTCATAAATT
1 ACATAATTTACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAACTT
*
87156306 ACATAATTTACATAACTTACATAATACATAACTTAAATAATTTAAAGATCAAATTTCATAACTT
1 ACATAATTTACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAACTT
*
87156370 ACACAATTTACATAACTTACATAATACATAA
1 ACATAATTTACATAACTTACATAATACATAA
87156401 ATATATATCA
Statistics
Matches: 144, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 144 1.00
ACGTcount: A:0.48, C:0.15, G:0.02, T:0.36
Consensus pattern (64 bp):
ACATAATTTACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAACTT
Found at i:87156312 original size:30 final size:30
Alignment explanation
Indices: 87156270--87156379 Score: 107
Period size: 30 Copynumber: 3.5 Consensus size: 30
87156260 ACATAGTACT
*
87156270 TAACTAACATAATTTAAAGATCAAATTTCA
1 TAACTTACATAATTTAAAGATCAAATTTCA
* *
87156300 TAAATTACATAATTTACATA-ACTTACATAA-TACA
1 TAACTTACATAATTTA-A-AGA--T-CA-AATTTCA
*
87156334 TAACTTAAATAATTTAAAGATCAAATTTCA
1 TAACTTACATAATTTAAAGATCAAATTTCA
*
87156364 TAACTTACACAATTTA
1 TAACTTACATAATTTA
87156380 CATAACTTAC
Statistics
Matches: 64, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
29 2 0.03
30 33 0.52
31 3 0.05
32 2 0.03
33 3 0.05
34 19 0.30
35 2 0.03
ACGTcount: A:0.49, C:0.14, G:0.02, T:0.35
Consensus pattern (30 bp):
TAACTTACATAATTTAAAGATCAAATTTCA
Found at i:87165365 original size:218 final size:218
Alignment explanation
Indices: 87164987--87165428 Score: 848
Period size: 218 Copynumber: 2.0 Consensus size: 218
87164977 GTTACTAAAA
*
87164987 TTTCAACTATTTTATGTGTATTGCTGGAAAAATGCGTAGAAGAAGATTACGAGATTTAAGTATTG
1 TTTCAACTATTTTATGTGTATTGCTAGAAAAATGCGTAGAAGAAGATTACGAGATTTAAGTATTG
*
87165052 TCAAGAATACTCCAAATTCGGAAGAAGCAAATAGTGAACAGCAGACAGTTATTGGATCTTCGAAC
66 TCAAGAATACTCCAAATTCAGAAGAAGCAAATAGTGAACAGCAGACAGTTATTGGATCTTCGAAC
*
87165117 GTGCCGGAGACACTTGACGAGCCTGCAGAATTTCAAAGTAATGTTAAGTTTATTTTACATGTGTG
131 GTGCCGGAGACACTTGACGAGCCTGCAGAATTTCAAAGTAATGTTAAGTTTATTTTACACGTGTG
87165182 TTGACTTTTATTATTGATTTATT
196 TTGACTTTTATTATTGATTTATT
87165205 TTTCAACTATTTTATGTGTATTGCTAGAAAAATGCGTAGAAGAAGATTACGAGATTTAAGTATTG
1 TTTCAACTATTTTATGTGTATTGCTAGAAAAATGCGTAGAAGAAGATTACGAGATTTAAGTATTG
*
87165270 TCAAGAATACTCCAAATTCAGAAGAAGCAAATAGTGAACAGCAGACAGTTATTGGATCTTCGAAT
66 TCAAGAATACTCCAAATTCAGAAGAAGCAAATAGTGAACAGCAGACAGTTATTGGATCTTCGAAC
87165335 GTGCCGGAGACACTTGACGAGCCTGCAGAATTTCAAAGTAATGTTAAGTTTATTTTACACGTGTG
131 GTGCCGGAGACACTTGACGAGCCTGCAGAATTTCAAAGTAATGTTAAGTTTATTTTACACGTGTG
87165400 TTGACTTTTATTATTGATTTATT
196 TTGACTTTTATTATTGATTTATT
87165423 TTTCAA
1 TTTCAA
87165429 TTTTAATATA
Statistics
Matches: 220, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
218 220 1.00
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.34
Consensus pattern (218 bp):
TTTCAACTATTTTATGTGTATTGCTAGAAAAATGCGTAGAAGAAGATTACGAGATTTAAGTATTG
TCAAGAATACTCCAAATTCAGAAGAAGCAAATAGTGAACAGCAGACAGTTATTGGATCTTCGAAC
GTGCCGGAGACACTTGACGAGCCTGCAGAATTTCAAAGTAATGTTAAGTTTATTTTACACGTGTG
TTGACTTTTATTATTGATTTATT
Found at i:87166841 original size:21 final size:21
Alignment explanation
Indices: 87166816--87166867 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
87166806 TAGAGTGGAA
* *
87166816 GCAGCAGCGTGGGAGGCAGCG
1 GCAGCAGCGAGGGAGGCAGAG
87166837 GCAGCAGCGAGGGAGGCAGAG
1 GCAGCAGCGAGGGAGGCAGAG
*
87166858 GCAGTAGCGA
1 GCAGCAGCGA
87166868 TGGCAGCAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.25, C:0.21, G:0.50, T:0.04
Consensus pattern (21 bp):
GCAGCAGCGAGGGAGGCAGAG
Found at i:87167320 original size:43 final size:43
Alignment explanation
Indices: 87167255--87167364 Score: 148
Period size: 43 Copynumber: 2.5 Consensus size: 43
87167245 GTGGAGGAAG
* * *
87167255 CGCCGCTAAAAGTCATGGCTTTTATCGGCGCTTATCCCACAAA
1 CGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTATCCCACAAA
* * *
87167298 CGCCGCTAAAAGCCATGACTTTTAGCGGTGCTTTTCCTACAAA
1 CGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTATCCCACAAA
*
87167341 GGCCGCTAAAAGCCATGATCTTTT
1 CGCCGCTAAAAGCCATGA-CTTTT
87167365 GTGACATTTT
Statistics
Matches: 59, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
43 54 0.92
44 5 0.08
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.27
Consensus pattern (43 bp):
CGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTATCCCACAAA
Found at i:87171373 original size:20 final size:20
Alignment explanation
Indices: 87171322--87171373 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
87171312 AATGGAAAAT
*
87171322 GTTTT-AAGCA-AAGTTACG
1 GTTTTCAAGCACAAGCTACG
87171340 GTTTTTCCAA-CACAAGCTACG
1 G-TTTT-CAAGCACAAGCTACG
87171361 GTTTTCAAGCACA
1 GTTTTCAAGCACA
87171374 CTATCATGTG
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
18 1 0.04
19 7 0.25
20 10 0.36
21 10 0.36
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (20 bp):
GTTTTCAAGCACAAGCTACG
Found at i:87172522 original size:39 final size:39
Alignment explanation
Indices: 87172478--87172555 Score: 120
Period size: 39 Copynumber: 2.0 Consensus size: 39
87172468 GACTGAGTAC
* *
87172478 GAGCGATATATTTGCTTTGAGGATGGCCTCAGGGATAAT
1 GAGCGATATATTCGCTTCGAGGATGGCCTCAGGGATAAT
* *
87172517 GAGCGATGTGTTCGCTTCGAGGATGGCCTCAGGGATAAT
1 GAGCGATATATTCGCTTCGAGGATGGCCTCAGGGATAAT
87172556 CTGAGGGTTC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.23, C:0.15, G:0.33, T:0.28
Consensus pattern (39 bp):
GAGCGATATATTCGCTTCGAGGATGGCCTCAGGGATAAT
Found at i:87179422 original size:29 final size:27
Alignment explanation
Indices: 87179362--87179423 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
87179352 ATGCCTTATT
* *
87179362 GGTGTGTTTGGGAGGATATGTTATACC
1 GGTGTGTTTGGGAGGACATATTATACC
* *
87179389 GGTGTGTTTGGGAGGCCATATTATACT
1 GGTGTGTTTGGGAGGACATATTATACC
87179416 GGTGTGTT
1 GGTGTGTT
87179424 ATAGAGGATT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.16, C:0.08, G:0.37, T:0.39
Consensus pattern (27 bp):
GGTGTGTTTGGGAGGACATATTATACC
Found at i:87183083 original size:44 final size:46
Alignment explanation
Indices: 87183018--87183225 Score: 176
Period size: 47 Copynumber: 4.5 Consensus size: 46
87183008 ATGTATGCCT
87183018 ATGCATGTCCCAGACATGTCTTACACTAGCACAACTCT-T-A-GCCG
1 ATGCATGTCCCAGACATGTCTTACACTAGC-CAACTCTGTAAGGCCG
* * * *
87183062 ATGCATGTCCCAGACACGTCTTACACTGGCTATCTCTGTCAAGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTAGCCAACTCTGT-AAGGCCG
* * * * * *
87183109 ATACATGTCCCAGACATGTCTTACTCT-GGC-ACTCATAATATGGCTG
1 ATGCATGTCCCAGACATGTCTTACACTAGCCAACTC-T-GTAAGGCCG
* ** * *
87183155 AAGCATGTCCCAGACATGTCTTACACTAGCCTTCGTCTG-GATGCCG
1 ATGCATGTCCCAGACATGTCTTACACTAGCCAAC-TCTGTAAGGCCG
87183201 ATGCCATGTCCCAGACATGGTCTTA
1 ATG-CATGTCCCAGACAT-GTCTTA
87183226 TACTGGCGCA
Statistics
Matches: 129, Mismatches: 24, Indels: 18
0.75 0.14 0.11
Matches are distributed among these distances:
43 5 0.04
44 29 0.22
45 3 0.02
46 37 0.29
47 45 0.35
48 8 0.06
49 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCCAACTCTGTAAGGCCG
Found at i:87189456 original size:55 final size:54
Alignment explanation
Indices: 87189369--87189523 Score: 152
Period size: 55 Copynumber: 2.8 Consensus size: 54
87189359 ATTAGGGTTT
* * * *
87189369 AAGGATACTATGTAAGACTATGCCAGGGCATGGCAATTGGTAAGGTT-TCTAAGGC-
1 AAGGA-ACCATGTAAGACCATGCCAAGGCATGGC-ATTGGTAA-GTTATATAAGGCA
* * * *
87189424 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCA
1 AAGG-AACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTA-TATAAGGCA
** *
87189480 AAGGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTT
1 AAGGAACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTT
87189524 CATAAATAAG
Statistics
Matches: 81, Mismatches: 15, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
53 3 0.04
54 7 0.09
55 66 0.81
56 5 0.06
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.24
Consensus pattern (54 bp):
AAGGAACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTATATAAGGCA
Found at i:87192188 original size:27 final size:27
Alignment explanation
Indices: 87192152--87192245 Score: 109
Period size: 27 Copynumber: 3.5 Consensus size: 27
87192142 TAGGCCAAAT
87192152 TAGTCATTTTACCTTACAGGGGTATTA
1 TAGTCATTTTACCTTACAGGGGTATTA
* * **
87192179 TAGTCCTTTTACCCTACAAAGGTATTA
1 TAGTCATTTTACCTTACAGGGGTATTA
* *
87192206 TAGTTATTTTACCTTATAGGGGTATT-
1 TAGTCATTTTACCTTACAGGGGTATTA
*
87192232 TCGGTCATTTTACC
1 T-AGTCATTTTACC
87192246 CTATGGGAGT
Statistics
Matches: 54, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
26 1 0.02
27 53 0.98
ACGTcount: A:0.24, C:0.17, G:0.16, T:0.43
Consensus pattern (27 bp):
TAGTCATTTTACCTTACAGGGGTATTA
Found at i:87192257 original size:27 final size:27
Alignment explanation
Indices: 87192154--87192270 Score: 78
Period size: 27 Copynumber: 4.3 Consensus size: 27
87192144 GGCCAAATTA
* * *
87192154 GTCATTTTACCTTACAGGGGTATTAT-A
1 GTCATTTTACCCTATAGGGGTATT-TCG
* * ** *
87192181 GTCCTTTTACCCTACAAAGGTATTAT-A
1 GTCATTTTACCCTATAGGGGTATT-TCG
* *
87192208 GTTATTTTACCTTATAGGGGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTCG
*
87192235 GTCATTTTACCCTAT-GGGAGTATTTTG
1 GTCATTTTACCCTATAGGG-GTATTTCG
*
87192262 GTTATTTTA
1 GTCATTTTA
87192271 TCTCATAAGG
Statistics
Matches: 73, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
26 4 0.05
27 69 0.95
ACGTcount: A:0.23, C:0.15, G:0.18, T:0.44
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGTATTTCG
Found at i:87192322 original size:27 final size:27
Alignment explanation
Indices: 87192265--87192350 Score: 106
Period size: 26 Copynumber: 3.2 Consensus size: 27
87192255 TATTTTGGTT
*
87192265 ATTTTATCTC-ATAAGGGCTAAAATTGTC
1 ATTTTATC-CAATAAGGGC-AAAATAGTC
87192293 ATTTTATCCAATAAGGGCAAAATAGTC
1 ATTTTATCCAATAAGGGCAAAATAGTC
*
87192320 A-TTTA-CCATATAAGGGCAAAACAGTC
1 ATTTTATCCA-ATAAGGGCAAAATAGTC
87192346 ATTTT
1 ATTTT
87192351 GTCTCAAAAG
Statistics
Matches: 53, Mismatches: 2, Indels: 7
0.85 0.03 0.11
Matches are distributed among these distances:
25 3 0.06
26 21 0.40
27 13 0.25
28 16 0.30
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (27 bp):
ATTTTATCCAATAAGGGCAAAATAGTC
Found at i:87202429 original size:19 final size:18
Alignment explanation
Indices: 87202392--87202435 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
87202382 ATACATACAG
87202392 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
87202409 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
87202428 TACTAATT
1 TAATAATT
87202436 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:87214082 original size:59 final size:59
Alignment explanation
Indices: 87214001--87214193 Score: 192
Period size: 60 Copynumber: 3.2 Consensus size: 59
87213991 TTAATATAAC
* * *
87214001 ATTTAGTACCTAAACTTGACACTTTTTCTTAATTTAGTACTTAAACTCTTTTTGGCCCA
1 ATTTGGTACCTAAACTTGACACTTTTTCTTAATTTGGTACCTAAACTCTTTTTGGCCCA
* * * *
87214060 ATTTGGTACCTGAATTTGACACTTTATCCTAATTTGGTACCTAAAC-CTTTTTGTAGCCCA
1 ATTTGGTACCTAAACTTGACACTTTTTCTTAATTTGGTACCTAAACTCTTTTTG--GCCCA
* * * * * * * **
87214120 ATTTGGAATCTGAACTT-AGCATTTTTTATTAATTTGGTACCTAAGCTATTTTTAGGTTCA
1 ATTTGGTACCTAAACTTGA-CACTTTTTCTTAATTTGGTACCTAAACTCTTTTT-GGCCCA
87214180 ATTTGGTACCTAAA
1 ATTTGGTACCTAAA
87214194 TTTATTAAAT
Statistics
Matches: 108, Mismatches: 21, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
58 7 0.06
59 40 0.37
60 55 0.51
61 5 0.05
62 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.12, T:0.43
Consensus pattern (59 bp):
ATTTGGTACCTAAACTTGACACTTTTTCTTAATTTGGTACCTAAACTCTTTTTGGCCCA
Found at i:87214653 original size:31 final size:32
Alignment explanation
Indices: 87214618--87214686 Score: 95
Period size: 31 Copynumber: 2.2 Consensus size: 32
87214608 GACCCCCCAA
*
87214618 AAGTTTAAGTACCAACTTAAG-AAAAAGTGTC
1 AAGTTTAAGTACCAAATTAAGAAAAAAGTGTC
* * *
87214649 AAGTTTAGGTACCAAATTAGGAAAAAAGTGTT
1 AAGTTTAAGTACCAAATTAAGAAAAAAGTGTC
87214681 AAGTTT
1 AAGTTT
87214687 GGGAGCCAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
31 18 0.55
32 15 0.45
ACGTcount: A:0.43, C:0.09, G:0.19, T:0.29
Consensus pattern (32 bp):
AAGTTTAAGTACCAAATTAAGAAAAAAGTGTC
Found at i:87218274 original size:42 final size:42
Alignment explanation
Indices: 87218209--87218312 Score: 174
Period size: 42 Copynumber: 2.5 Consensus size: 42
87218199 ACACGCCCAG
*
87218209 GACACATGCCTGTGCCT-GAGGCCGTGTCATCCACATGGCTGA
1 GACACATGCCTGTGTCTCG-GGCCGTGTCATCCACATGGCTGA
87218251 GACACATGCCTGTGTCTCGGGCCGTGTCATCCACATGGCTGA
1 GACACATGCCTGTGTCTCGGGCCGTGTCATCCACATGGCTGA
*
87218293 GACACACGCCTGTGTCTCGG
1 GACACATGCCTGTGTCTCGG
87218313 CCCATGTGCT
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
42 58 0.98
43 1 0.02
ACGTcount: A:0.17, C:0.32, G:0.29, T:0.22
Consensus pattern (42 bp):
GACACATGCCTGTGTCTCGGGCCGTGTCATCCACATGGCTGA
Found at i:87219307 original size:41 final size:41
Alignment explanation
Indices: 87219260--87219356 Score: 167
Period size: 41 Copynumber: 2.4 Consensus size: 41
87219250 ACGGGCCAAT
*
87219260 TCACACAAGCTGTCAATCAAGACGTAGCTATTCAGTGCTAC
1 TCACACAAGCTGTCAATCAAGACGTAGCTACTCAGTGCTAC
* *
87219301 TCACACAAGTTGTCAATCAAGACGTAGCTACTCAGTGCTGC
1 TCACACAAGCTGTCAATCAAGACGTAGCTACTCAGTGCTAC
87219342 TCACACAAGCTGTCA
1 TCACACAAGCTGTCA
87219357 GGTATCCACA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.24
Consensus pattern (41 bp):
TCACACAAGCTGTCAATCAAGACGTAGCTACTCAGTGCTAC
Found at i:87231630 original size:15 final size:16
Alignment explanation
Indices: 87231598--87231631 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
87231588 ATTCGGGGAA
*
87231598 TAAAAAAAATTACTTT
1 TAAAAAAAATTACATT
87231614 TAAAAAAAATTA-ATT
1 TAAAAAAAATTACATT
87231629 TAA
1 TAA
87231632 TCACATTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (16 bp):
TAAAAAAAATTACATT
Found at i:87232009 original size:19 final size:20
Alignment explanation
Indices: 87231971--87232009 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
87231961 AGACTTGACC
*
87231971 TCTCTTCACTAAAAATAAAT
1 TCTCTTCACTAAAAAGAAAT
*
87231991 TCTC-TCACTATAAAGAAAT
1 TCTCTTCACTAAAAAGAAAT
87232010 CAGATAAGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.44, C:0.21, G:0.03, T:0.33
Consensus pattern (20 bp):
TCTCTTCACTAAAAAGAAAT
Found at i:87232884 original size:53 final size:54
Alignment explanation
Indices: 87232815--87233021 Score: 218
Period size: 53 Copynumber: 3.8 Consensus size: 54
87232805 TTCCTTTTTA
* * * *
87232815 AACTTACCATTTCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * *
87232868 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * *
87232922 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * *
87232977 AACTTACCAATGCCATGCCTTGGCATCGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
87233022 AAACCCTAAT
Statistics
Matches: 123, Mismatches: 29, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
53 45 0.37
54 37 0.30
55 41 0.33
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.38
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:87232970 original size:55 final size:53
Alignment explanation
Indices: 87232827--87233021 Score: 192
Period size: 55 Copynumber: 3.6 Consensus size: 53
87232817 CTTACCATTT
* *
87232827 CCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCATTG
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATG
* * * * ** * *
87232880 CCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGTAGTTTATCAATG
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G-AACTCACCAATG
* * * * *
87232935 CCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAAAACTTACCAATG
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAATG
* * * *
87232989 CCATGCCTTGGCATCGTCTTACTTGGTATCCTT
1 CCATGTCTTGACATGGTCTTACATGGTATCCTT
87233022 AAACCCTAAT
Statistics
Matches: 113, Mismatches: 27, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
53 35 0.31
54 37 0.33
55 41 0.36
ACGTcount: A:0.19, C:0.25, G:0.18, T:0.37
Consensus pattern (53 bp):
CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATG
Found at i:87234802 original size:35 final size:35
Alignment explanation
Indices: 87234756--87234827 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 35
87234746 TCAACTGGGG
*
87234756 TATGTTGGCTTGCATTTCTTGGTGTGGTCGAGTGC
1 TATGTTGGCTTGCATTTCTTGGTGTGGTCGAATGC
*
87234791 TATGTTGGCTTGCATTTCTTGGTGTTGTCGAATGC
1 TATGTTGGCTTGCATTTCTTGGTGTGGTCGAATGC
87234826 TA
1 TA
87234828 CTTTCCCTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.11, C:0.14, G:0.31, T:0.44
Consensus pattern (35 bp):
TATGTTGGCTTGCATTTCTTGGTGTGGTCGAATGC
Found at i:87240260 original size:27 final size:27
Alignment explanation
Indices: 87240188--87240267 Score: 115
Period size: 27 Copynumber: 3.0 Consensus size: 27
87240178 GGCAAAACAA
* * * *
87240188 TCATTTTACCCTACAGGGGTATGTCGG
1 TCATTTTACACTACAAGGTTATTTCGG
*
87240215 TCATTTTACACTACAAGGTTATTTGGG
1 TCATTTTACACTACAAGGTTATTTCGG
87240242 TCATTTTACACTACAAGGTTATTTCG
1 TCATTTTACACTACAAGGTTATTTCG
87240268 ATAAATTTTC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.39
Consensus pattern (27 bp):
TCATTTTACACTACAAGGTTATTTCGG
Found at i:87240309 original size:27 final size:26
Alignment explanation
Indices: 87240261--87240593 Score: 244
Period size: 27 Copynumber: 12.5 Consensus size: 26
87240251 ACTACAAGGT
*
87240261 TATTTCGATAAATTTT-CAAATCAGGGG
1 TATTTCGGT-AATTTTACAAATC-GGGG
* *
87240288 TGTTTTGGTAATTTTACAAATCGAGGG
1 TATTTCGGTAATTTTACAAATCG-GGG
*
87240315 TATTTCGGTAATTTTATAAATCGGGAG
1 TATTTCGGTAATTTTACAAATCGGG-G
* *
87240342 TATTTTGATAATTTTACAAATCGAGGG
1 TATTTCGGTAATTTTACAAATCG-GGG
* * *
87240369 TGTTTCAGTAATTTCACAAATCGGGGG
1 TATTTCGGTAATTTTACAAATC-GGGG
* * **
87240396 TATTTCAGTAATTTCACAAATCGAGCA
1 TATTTCGGTAATTTTACAAATCG-GGG
* * *
87240423 AATTTCGATAA-TTT-CAGAATCGATGG
1 TATTTCGGTAATTTTACA-AATCG-GGG
** *
87240449 TATTTCAATAATTTTACAAATCAAGGG
1 TATTTCGGTAATTTTACAAATC-GGGG
* *
87240476 TATTTCAGTAATTTCAC-AATCGAGGG
1 TATTTCGGTAATTTTACAAATCG-GGG
**
87240502 TATTTTAGTAATTTTACAAATCGAGGG
1 TATTTCGGTAATTTTACAAATCG-GGG
* **
87240529 TGTTTCAATAATTTTACAAATCGAGGG
1 TATTTCGGTAATTTTACAAATCG-GGG
* * *
87240556 TATTTCAGTAATTTCAC-AATCAAGGG
1 TATTTCGGTAATTTTACAAATC-GGGG
87240582 TATTTCGGTAAT
1 TATTTCGGTAAT
87240594 GTGACAGCCC
Statistics
Matches: 252, Mismatches: 41, Indels: 27
0.79 0.13 0.08
Matches are distributed among these distances:
25 2 0.01
26 67 0.27
27 178 0.71
28 5 0.02
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (26 bp):
TATTTCGGTAATTTTACAAATCGGGG
Found at i:87240319 original size:54 final size:53
Alignment explanation
Indices: 87240261--87240593 Score: 313
Period size: 54 Copynumber: 6.2 Consensus size: 53
87240251 ACTACAAGGT
* **
87240261 TATTTCGATAAATTTTCAAATC-AGGGGTGTTTTGGTAATTTTACAAATCGAGGG
1 TATTTCGAT-AATTTTCAAATCGA-GGGTATTTCAGTAATTTTACAAATCGAGGG
* * *
87240315 TATTTCGGTAATTTTATAAATCG-GGAGTATTT-TGATAATTTTACAAATCGAGGG
1 TATTTCGATAATTTT-CAAATCGAGG-GTATTTCAG-TAATTTTACAAATCGAGGG
* * * * **
87240369 TGTTTC-AGTAATTTCACAAATCGGGGGTATTTCAGTAATTTCACAAATCGAGCA
1 TATTTCGA-TAATTT-TCAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGG
* * * *
87240423 AATTTCGATAA-TTTCAGAATCGATGGTATTTCAATAATTTTACAAATCAAGGG
1 TATTTCGATAATTTTCA-AATCGAGGGTATTTCAGTAATTTTACAAATCGAGGG
*
87240476 TATTTC-AGTAA-TTTCACAATCGAGGGTATTTTAGTAATTTTACAAATCGAGGG
1 TATTTCGA-TAATTTTCA-AATCGAGGGTATTTCAGTAATTTTACAAATCGAGGG
* * * *
87240529 TGTTTCAATAATTTTACAAATCGAGGGTATTTCAGTAATTTCAC-AATCAAGGG
1 TATTTCGATAATTTT-CAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGG
*
87240582 TATTTCGGTAAT
1 TATTTCGATAAT
87240594 GTGACAGCCC
Statistics
Matches: 230, Mismatches: 35, Indels: 29
0.78 0.12 0.10
Matches are distributed among these distances:
52 3 0.01
53 110 0.48
54 111 0.48
55 6 0.03
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (53 bp):
TATTTCGATAATTTTCAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGG
Found at i:87240468 original size:53 final size:54
Alignment explanation
Indices: 87240296--87240593 Score: 327
Period size: 53 Copynumber: 5.6 Consensus size: 54
87240286 GGTGTTTTGG
* * * **
87240296 TAATTTTACAAATCGAGGGTATTTCGGTAATTTTATAAATCG-GGAGTATTTTGA
1 TAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAAATCGAGG-GTATTTCAA
* * *
87240350 TAATTTTACAAATCGAGGGTGTTTCAGTAATTTCACAAATCGGGGGTATTTCAG
1 TAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAAATCGAGGGTATTTCAA
* *** * *
87240404 TAATTTCACAAATCGAGCAAATTTC-GATAATTTCA-GAATCGATGGTATTTCAA
1 TAATTTTACAAATCGAGGGTATTTCAG-TAATTTCACAAATCGAGGGTATTTCAA
* * *
87240457 TAATTTTACAAATCAAGGGTATTTCAGTAATTTCAC-AATCGAGGGTATTTTAG
1 TAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAAATCGAGGGTATTTCAA
* * * *
87240510 TAATTTTACAAATCGAGGGTGTTTCAATAATTTTACAAATCGAGGGTATTTCAG
1 TAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAAATCGAGGGTATTTCAA
* * *
87240564 TAATTTCAC-AATCAAGGGTATTTCGGTAAT
1 TAATTTTACAAATCGAGGGTATTTCAGTAAT
87240594 GTGACAGCCC
Statistics
Matches: 205, Mismatches: 34, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
53 106 0.52
54 97 0.47
55 2 0.01
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (54 bp):
TAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAAATCGAGGGTATTTCAA
Found at i:87240575 original size:80 final size:79
Alignment explanation
Indices: 87240261--87240586 Score: 381
Period size: 80 Copynumber: 4.1 Consensus size: 79
87240251 ACTACAAGGT
* *** *
87240261 TATTTCGATAAATTTTCAAATC-AGGGGTGTTTTGGTAATTTTACAAATCGAGGGTATTTCGGTA
1 TATTTTGAT-AATTTTCAAATCGA-GGGTGTTTCAATAATTTTACAAATCGAGGGTATTTCAGTA
* *
87240325 ATTTTATAAATCG-GGAG
64 ATTTCA-CAATCGAGG-G
* * *
87240342 TATTTTGATAATTTTACAAATCGAGGGTGTTTCAGTAATTTCACAAATCGGGGGTATTTCAGTAA
1 TATTTTGATAATTTT-CAAATCGAGGGTGTTTCAATAATTTTACAAATCGAGGGTATTTCAGTAA
**
87240407 TTTCACAAATCGAGCA
65 TTTCAC-AATCGAGGG
* * * * *
87240423 AATTTCGATAA-TTTCAGAATCGATGGTATTTCAATAATTTTACAAATCAAGGGTATTTCAGTAA
1 TATTTTGATAATTTTCA-AATCGAGGGTGTTTCAATAATTTTACAAATCGAGGGTATTTCAGTAA
87240487 TTTCACAATCGAGGG
65 TTTCACAATCGAGGG
87240502 TATTTT-AGTAATTTTACAAATCGAGGGTGTTTCAATAATTTTACAAATCGAGGGTATTTCAGTA
1 TATTTTGA-TAATTTT-CAAATCGAGGGTGTTTCAATAATTTTACAAATCGAGGGTATTTCAGTA
*
87240566 ATTTCACAATCAAGGG
64 ATTTCACAATCGAGGG
87240582 TATTT
1 TATTT
87240587 CGGTAATGTG
Statistics
Matches: 211, Mismatches: 26, Indels: 17
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.00
79 16 0.08
80 122 0.58
81 70 0.33
82 2 0.01
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (79 bp):
TATTTTGATAATTTTCAAATCGAGGGTGTTTCAATAATTTTACAAATCGAGGGTATTTCAGTAAT
TTCACAATCGAGGG
Found at i:87241394 original size:39 final size:40
Alignment explanation
Indices: 87241294--87241576 Score: 313
Period size: 40 Copynumber: 7.1 Consensus size: 40
87241284 TCGAATGATG
* * * *
87241294 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
87241334 TCCGGACTAAGATCCGAAGGCATCTGTGCGAGTTACTAAT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
* *
87241374 TCTGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
87241413 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
*
87241453 TCCGGGCTAAG-CCCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
* *
87241492 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTA-AA
* * ** * *
87241533 -CCGGGCTATGTCCCGAAGGCATTTGAACGAGTTTCTATA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
87241572 TCCGG
1 TCCGG
87241577 TTAAATTCCG
Statistics
Matches: 204, Mismatches: 34, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
39 69 0.34
40 127 0.62
41 8 0.04
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:87241430 original size:79 final size:80
Alignment explanation
Indices: 87241294--87241576 Score: 360
Period size: 79 Copynumber: 3.6 Consensus size: 80
87241284 TCGAATGATG
* * * * *
87241294 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATC
1 TCCGGGCTAAGTCCCGAAGGCATTTGTAC-GAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
87241358 TGTGCGAGTTACTAAT
65 TGTGCGAGTTACTAAT
* * * **
87241374 TCTGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAATCCGGACTAAGAT-CCGAAGGCATT
*
87241437 TGTGCGAGATACTAAT
65 TGTGCGAGTTACTAAT
87241453 TCCGGGCTAAG-CCCGAAGGCATTTGTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
87241517 GTGCGAGTTACT-AT
66 GTGCGAGTTACTAAT
* * * * *
87241531 AACCGGGCTATGTCCCGAAGGCATTTGAACGAGTTTCTATATCCGG
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAATCCGG
87241577 TTAAATTCCG
Statistics
Matches: 178, Mismatches: 20, Indels: 10
0.86 0.10 0.05
Matches are distributed among these distances:
78 3 0.02
79 128 0.72
80 47 0.26
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAT
Found at i:87241509 original size:119 final size:121
Alignment explanation
Indices: 87241294--87241557 Score: 344
Period size: 119 Copynumber: 2.2 Consensus size: 121
87241284 TCGAATGATG
* *
87241294 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATC
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTGACTATATCCGGACTAAGACCCGAAGGCATC
* * * *
87241358 TGTGCGAGTTACTAATTCTGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTA-AA
66 TGTACGAGTTACTAAATCCGGACTAAGCCCGAAGGCATTGGTGCGAGTTACTATAA
* *
87241413 TCCGGGTTAAGTCCCGAAGGCATTTGTGCG-AGAT-ACTA-ATTCCGGGCTAAG-CCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TGACTATA-TCCGGACTAAGACCCGAAGGCA
* * *
87241474 TTTGTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTATAA
64 TCTGTACGAGTTACTAAATCCGGACTAAG-CCCGAAGGCATTGGTGCGAGTTACTATAA
*
87241533 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
87241558 AACGAGTTTC
Statistics
Matches: 127, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
118 34 0.27
119 83 0.65
120 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (121 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTGACTATATCCGGACTAAGACCCGAAGGCATC
TGTACGAGTTACTAAATCCGGACTAAGCCCGAAGGCATTGGTGCGAGTTACTATAA
Found at i:87249510 original size:79 final size:81
Alignment explanation
Indices: 87249374--87249556 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
87249364 TCGAATGATG
* *
87249374 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
87249438 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
87249453 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
87249515 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
87249533 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
87249557 TGAACGAGTT
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:87249572 original size:40 final size:39
Alignment explanation
Indices: 87249375--87249558 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
87249365 CGAATGATGT
* * * *
87249375 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
87249415 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
87249455 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
87249493 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
87249534 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
87249559 AACGAGTTGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:87249591 original size:79 final size:79
Alignment explanation
Indices: 87249427--87249583 Score: 201
Period size: 79 Copynumber: 2.0 Consensus size: 79
87249417 GGACTAAGAT
* **
87249427 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
87249492 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
87249506 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGTTGCT
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTACT
* *
87249570 ATATTC-GGTTAAAT
64 AAATCCGGGTTAAAT
87249584 TTCGAAGGTA
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
78 2 0.03
79 40 0.60
80 25 0.37
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:87251097 original size:37 final size:37
Alignment explanation
Indices: 87251037--87251112 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
87251027 TATTACGAAA
* * *
87251037 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
*
87251074 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
87251111 TC
1 TC
87251113 CTTAGAACTC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.22
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
Found at i:87251351 original size:47 final size:47
Alignment explanation
Indices: 87251298--87252512 Score: 2070
Period size: 47 Copynumber: 25.6 Consensus size: 47
87251288 ATATATACAC
87251298 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
1 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
87251345 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
1 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
87251392 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
1 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
87251439 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
1 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
87251486 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
1 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
87251533 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
1 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
87251580 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
1 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
87251627 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
1 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
87251674 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
1 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
87251721 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
1 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
87251768 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
1 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
87251815 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
1 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
87251862 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
1 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
87251909 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
1 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
87251956 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
1 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
87252003 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
1 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
87252050 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
1 TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
* **
87252097 TTCATCACATCGGCCATTAAGCCCTATTCACATATATACACTTTCACA
1 TTCATCACATCGGCCATTAAGCCTTA-TCACGCATATACACTTTCACA
* * **
87252145 GTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACA
1 TTCATCACATCGGCCATTAAGCCTTATCAC--GCATATACACTTTCACA
* **
87252194 TTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACA
1 TTCATCACATCGGCCATTAAGCCTTATCAC--GCATATACACTTTCACA
* **
87252243 TTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACA
1 TTCATCACATCGGCCATTAAGCCTTATCAC--GCATATACACTTTCACA
* **
87252292 TTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACA
1 TTCATCACATCGGCCATTAAGCCTTATCAC--GCATATACACTTTCACA
* *
87252341 TTCATCACATCGGCCATTAGGGGCCTTATCACACATATACACTTTCACA
1 TTCATCACATCGGCCATTA--AGCCTTATCACGCATATACACTTTCACA
* **
87252390 TTCATCACATCGGCCATTAAGCCCTATTCACATATATACACTTTCACA
1 TTCATCACATCGGCCATTAAGCCTTA-TCACGCATATACACTTTCACA
* * **
87252438 GTCATCACATCGGCCATTAGGCCTTATCTCACATATATACACTTTCACA
1 TTCATCACATCGGCCATTAAGCCTTA--TCACGCATATACACTTTCACA
*
87252487 TTCATCACATCGGCCATTAGGCCTTA
1 TTCATCACATCGGCCATTAAGCCTTA
87252513 CTATCATTTC
Statistics
Matches: 1145, Mismatches: 16, Indels: 12
0.98 0.01 0.01
Matches are distributed among these distances:
47 786 0.69
48 85 0.07
49 263 0.23
51 11 0.01
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.30
Consensus pattern (47 bp):
TTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACA
Found at i:87256928 original size:40 final size:40
Alignment explanation
Indices: 87255977--87256903 Score: 1755
Period size: 40 Copynumber: 23.2 Consensus size: 40
87255967 GGGACCTAGC
* * * * * * *
87255977 CCGGATATAACACCAGCACAAATGCTCCTCGGGACTTAGC
1 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
* * *
87256017 CCGGATACATCAATAGCACAAATGCTCTTCGTAACTTAGT
1 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
*
87256057 CCGGATACATCACTAGCACGAATGTTCTTCGGAACTTAGT
1 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
87256097 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
1 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
87256137 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
1 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
87256177 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
1 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
87256217 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
1 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
87256257 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
1 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
87256297 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
1 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
87256337 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
1 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
87256377 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
1 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
87256417 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
1 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
87256457 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
1 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
87256497 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
1 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
87256537 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
1 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
87256577 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
1 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
87256617 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
1 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
87256657 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
1 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
87256697 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
1 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
87256737 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
1 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
87256777 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
1 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
87256817 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
1 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
87256857 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
1 CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
87256897 CCGGATA
1 CCGGATA
87256904 TAACCACAAG
Statistics
Matches: 874, Mismatches: 13, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 874 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
Found at i:87256964 original size:40 final size:40
Alignment explanation
Indices: 87255973--87257104 Score: 521
Period size: 40 Copynumber: 28.3 Consensus size: 40
87255963 CTTTGGGACC
* * *
87255973 TAGCCCGGATATAAC-AC-CAGCACAAATGCTCCTCGGGACT
1 TAGCCCGGATATATCAACTC-GCACAAATGC-CTTCGGGTCT
* * ***
87256013 TAGCCCGGATACATCAA-TAGCACAAATGCTCTTCGTAACT
1 TAGCCCGGATATATCAACTCGCACAAATGC-CTTCGGGTCT
* * * * * **
87256053 TAGTCCGGATACATC-ACTAGCACGAATGTTCTTCGGAACT
1 TAGCCCGGATATATCAACTCGCACAAATG-CCTTCGGGTCT
* * * * **
87256093 TAGTCCGGATACATC-ACTAGCACGAATGCTCTTCGGAACT
1 TAGCCCGGATATATCAACTCGCACAAATGC-CTTCGGGTCT
* * * * **
87256133 TAGTCCGGATACATC-ACTAGCACGAATGCTCTTCGGAACT
1 TAGCCCGGATATATCAACTCGCACAAATGC-CTTCGGGTCT
* * * * **
87256173 TAGTCCGGATACATC-ACTAGCACGAATGCTCTTCGGAACT
1 TAGCCCGGATATATCAACTCGCACAAATGC-CTTCGGGTCT
* * * * **
87256213 TAGTCCGGATACATC-ACTAGCACGAATGCTCTTCGGAACT
1 TAGCCCGGATATATCAACTCGCACAAATGC-CTTCGGGTCT
* * * * **
87256253 TAGTCCGGATACATC-ACTAGCACGAATGCTCTTCGGAACT
1 TAGCCCGGATATATCAACTCGCACAAATGC-CTTCGGGTCT
* * * * **
87256293 TAGTCCGGATACATC-ACTAGCACGAATGCTCTTCGGAACT
1 TAGCCCGGATATATCAACTCGCACAAATGC-CTTCGGGTCT
* * * * **
87256333 TAGTCCGGATACATC-ACTAGCACGAATGCTCTTCGGAACT
1 TAGCCCGGATATATCAACTCGCACAAATGC-CTTCGGGTCT
* * * * **
87256373 TAGTCCGGATACATC-ACTAGCACGAATGCTCTTCGGAACT
1 TAGCCCGGATATATCAACTCGCACAAATGC-CTTCGGGTCT
* * * * **
87256413 TAGTCCGGATACATC-ACTAGCACGAATGCTCTTCGGAACT
1 TAGCCCGGATATATCAACTCGCACAAATGC-CTTCGGGTCT
* * * * **
87256453 TAGTCCGGATACATC-ACTAGCACGAATGCTCTTCGGAACT
1 TAGCCCGGATATATCAACTCGCACAAATGC-CTTCGGGTCT
* * * * **
87256493 TAGTCCGGATACATC-ACTAGCACGAATGCTCTTCGGAACT
1 TAGCCCGGATATATCAACTCGCACAAATGC-CTTCGGGTCT
* * * * **
87256533 TAGTCCGGATACATC-ACTAGCACGAATGCTCTTCGGAACT
1 TAGCCCGGATATATCAACTCGCACAAATGC-CTTCGGGTCT
* * * * **
87256573 TAGTCCGGATACATC-ACTAGCACGAATGCTCTTCGGAACT
1 TAGCCCGGATATATCAACTCGCACAAATGC-CTTCGGGTCT
* * * * **
87256613 TAGTCCGGATACATC-ACTAGCACGAATGCTCTTCGGAACT
1 TAGCCCGGATATATCAACTCGCACAAATGC-CTTCGGGTCT
* * * * **
87256653 TAGTCCGGATACATC-ACTAGCACGAATGCTCTTCGGAACT
1 TAGCCCGGATATATCAACTCGCACAAATGC-CTTCGGGTCT
* * * * **
87256693 TAGTCCGGATACATC-ACTAGCACGAATGCTCTTCGGAACT
1 TAGCCCGGATATATCAACTCGCACAAATGC-CTTCGGGTCT
* * * * **
87256733 TAGTCCGGATACATC-ACTAGCACGAATGCTCTTCGGAACT
1 TAGCCCGGATATATCAACTCGCACAAATGC-CTTCGGGTCT
* * * * **
87256773 TAGTCCGGATACATC-ACTAGCACGAATGCTCTTCGGAACT
1 TAGCCCGGATATATCAACTCGCACAAATGC-CTTCGGGTCT
* * * * **
87256813 TAGTCCGGATACATC-ACTAGCACGAATGCTCTTCGGAACT
1 TAGCCCGGATATATCAACTCGCACAAATGC-CTTCGGGTCT
* * * * **
87256853 TAGTCCGGATACATC-ACTAGCACGAATGCTCTTCGGAACT
1 TAGCCCGGATATATCAACTCGCACAAATGC-CTTCGGGTCT
* * * ** * *
87256893 TAGTCCGGATATAACCACAAGCTCAATTGCCTTCGGGTCT
1 TAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCT
* * * *
87256933 TAACCCGGGTATAGCAACTCGCACGAATGCCTTCGGGTCT
1 TAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCT
* *
87256973 TAGCCCGGATATATCAACTTGCACAATTGCCTTCGGGTCT
1 TAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCT
*
87257013 TAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCT
1 TAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCT
* *
87257053 TAACCCGGATATATCAATTCGCACAAATGCCTTCGGGTCT
1 TAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCT
87257093 TAGCCCGGATAT
1 TAGCCCGGATAT
87257105 CATTCAAATG
Statistics
Matches: 1046, Mismatches: 40, Indels: 12
0.95 0.04 0.01
Matches are distributed among these distances:
39 1 0.00
40 1034 0.99
41 11 0.01
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
TAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCT
Found at i:87257015 original size:120 final size:120
Alignment explanation
Indices: 87256005--87257104 Score: 747
Period size: 120 Copynumber: 9.2 Consensus size: 120
87255995 CAAATGCTCC
* * * * * * * *
87256005 TCGGGACTTAGCCCGGATACATCAATAGCACAAATGCTCTTCGTAACTTAGTCCGGATACATC-A
1 TCGGGTCTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATAACAA
* * * ** ** * * *
87256069 CTAGCACGAATGTTCTTCGGAACTTAGTCCGGATACATC-ACTAGCACGAATGCTCT
66 CAAGCACAAATG-CCTTCGGGTCTTAACCCGGATATAGCAACTCGCACGAATGC-CT
** * * * * *
87256125 TCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATC-A
1 TCGGGTCTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATAACAA
* * ** ** * * *
87256189 CTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATC-ACTAGCACGAATGCTCT
66 CAAGCACAAATGC-CTTCGGGTCTTAACCCGGATATAGCAACTCGCACGAATGC-CT
** * * * * *
87256245 TCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATC-A
1 TCGGGTCTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATAACAA
* * ** ** * * *
87256309 CTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATC-ACTAGCACGAATGCTCT
66 CAAGCACAAATGC-CTTCGGGTCTTAACCCGGATATAGCAACTCGCACGAATGC-CT
** * * * * *
87256365 TCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATC-A
1 TCGGGTCTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATAACAA
* * ** ** * * *
87256429 CTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATC-ACTAGCACGAATGCTCT
66 CAAGCACAAATGC-CTTCGGGTCTTAACCCGGATATAGCAACTCGCACGAATGC-CT
** * * * * *
87256485 TCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATC-A
1 TCGGGTCTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATAACAA
* * ** ** * * *
87256549 CTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATC-ACTAGCACGAATGCTCT
66 CAAGCACAAATGC-CTTCGGGTCTTAACCCGGATATAGCAACTCGCACGAATGC-CT
** * * * * *
87256605 TCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATC-A
1 TCGGGTCTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATAACAA
* * ** ** * * *
87256669 CTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATC-ACTAGCACGAATGCTCT
66 CAAGCACAAATGC-CTTCGGGTCTTAACCCGGATATAGCAACTCGCACGAATGC-CT
** * * * * *
87256725 TCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATC-A
1 TCGGGTCTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATAACAA
* * ** ** * * *
87256789 CTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATC-ACTAGCACGAATGCTCT
66 CAAGCACAAATGC-CTTCGGGTCTTAACCCGGATATAGCAACTCGCACGAATGC-CT
** * * * *
87256845 TCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATATAACCA
1 TCGGGTCTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATAACAA
* * *
87256910 CAAGCTCAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAATGCCT
66 CAAGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACGAATGCCT
* ** *
87256965 TCGGGTCTTAGCCCGGATATATCAACTTGCAC-AATTGC-CTTCGGGTCTTAGCCCGGATATATC
1 TCGGGTCTTAGCCCGGATATATC-ACTAGCACGAA-TGCTCTTCGGAACTTAGCCCGGATATAAC
*** * * *
87257028 AATTCGCACAAATGCCTTCGGGTCTTAACCCGGATATATCAATTCGCACAAATGCCT
64 AACAAGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACGAATGCCT
87257085 TCGGGTCTTAGCCCGGATAT
1 TCGGGTCTTAGCCCGGATAT
87257105 CATTCAAATG
Statistics
Matches: 936, Mismatches: 39, Indels: 10
0.95 0.04 0.01
Matches are distributed among these distances:
120 903 0.96
121 33 0.04
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (120 bp):
TCGGGTCTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATAACAA
CAAGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACGAATGCCT
Found at i:87257490 original size:29 final size:29
Alignment explanation
Indices: 87257451--87257529 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
87257441 CTTAATAATC
*
87257451 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
87257481 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
87257510 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
87257530 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:87259473 original size:37 final size:37
Alignment explanation
Indices: 87259423--87259501 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
87259413 TTATTACGAA
* * *
87259423 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
87259460 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
87259497 GTCTT
1 GTCTT
87259502 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:87259689 original size:47 final size:47
Alignment explanation
Indices: 87259620--87260118 Score: 944
Period size: 47 Copynumber: 10.6 Consensus size: 47
87259610 CCCTTCGGGA
* *
87259620 CTTATCACATTTATACACTTTCACATCCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87259667 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87259714 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87259761 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87259808 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
87259855 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87259902 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87259951 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87259998 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87260045 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
87260092 CTTATCACATATATAAACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
87260119 TATTCAAATA
Statistics
Matches: 445, Mismatches: 5, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
47 399 0.90
49 46 0.10
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:87265803 original size:39 final size:40
Alignment explanation
Indices: 87265695--87265879 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
87265685 TCGAATGATG
* *
87265695 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
87265734 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
87265775 TCCGGGCTAAG-CCTGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
87265814 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
87265853 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
87265880 AACGAGTTGC
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:87265831 original size:79 final size:81
Alignment explanation
Indices: 87265695--87265877 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
87265685 TCGAATGATG
* *
87265695 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
87265759 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
87265774 TTCCGGGCTAAG-CCTGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
87265836 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
87265854 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
87265878 TGAACGAGTT
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 29 0.33
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:87265912 original size:79 final size:79
Alignment explanation
Indices: 87265748--87265904 Score: 192
Period size: 79 Copynumber: 2.0 Consensus size: 79
87265738 GGACTAAGAT
* * **
87265748 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCTGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
87265813 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
87265827 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGTTGCT
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTACT
* *
87265891 ATATTC-GGTTAAAT
64 AAATCCGGGTTAAAT
87265905 TTCGAAGGTA
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
78 2 0.03
79 40 0.61
80 24 0.36
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:87269978 original size:37 final size:37
Alignment explanation
Indices: 87269928--87270039 Score: 154
Period size: 37 Copynumber: 3.0 Consensus size: 37
87269918 ACCTTTAGCT
* *
87269928 CAGACGAAATCTCCACACGAAGTTATCGGGTCTTACC
1 CAGACAAAATCTCCACACGAAGTCATCGGGTCTTACC
* *
87269965 CAGACAAAATCTCCACAC-ATAGTCATCGGGTCTCACT
1 CAGACAAAATCTCCACACGA-AGTCATCGGGTCTTACC
* *
87270002 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CAGACAAAATCTCCACACGAAGTCATCGGGTCTTACC
87270039 C
1 C
87270040 GGAATATATT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
36 1 0.02
37 64 0.98
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.21
Consensus pattern (37 bp):
CAGACAAAATCTCCACACGAAGTCATCGGGTCTTACC
Found at i:87270247 original size:50 final size:50
Alignment explanation
Indices: 87270193--87270289 Score: 142
Period size: 50 Copynumber: 1.9 Consensus size: 50
87270183 ATCGCCTATG
*
87270193 TATTTCACACTAG-CCATTCGGCTTTACCACATATACATATCTCATATATA
1 TATTTCACA-TAGACCATTCGACTTTACCACATATACATATCTCATATATA
* * *
87270243 TATTTCACATTGACCATTCGACTTTACCACGTATGCATATCTCATAT
1 TATTTCACATAGACCATTCGACTTTACCACATATACATATCTCATAT
87270290 TCATCACATT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
49 2 0.05
50 40 0.95
ACGTcount: A:0.30, C:0.26, G:0.07, T:0.37
Consensus pattern (50 bp):
TATTTCACATAGACCATTCGACTTTACCACATATACATATCTCATATATA
Found at i:87270346 original size:47 final size:47
Alignment explanation
Indices: 87270247--87270439 Score: 237
Period size: 47 Copynumber: 4.1 Consensus size: 47
87270237 TATATATATT
* * * * *
87270247 TCACATTGACCATTCGACTTTA-C-CACGTATGCATATCTCATATTCA
1 TCACATTGGCCATTCGACCTTATCACACATATGCAT-GCTCACATTCA
*
87270293 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGACCTTATCACACATATGCATGCTCACATTCA
* * *
87270340 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGACCTTATCACACATATGCATGCTCACATTCA
* * * **
87270387 TCACATTGGCCATTCGACCTTATCTCATATATACATATTCACATTCA
1 TCACATTGGCCATTCGACCTTATCACACATATGCATGCTCACATTCA
87270434 TCACAT
1 TCACAT
87270440 AAAATCCTAA
Statistics
Matches: 133, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
46 19 0.14
47 104 0.78
48 10 0.08
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGACCTTATCACACATATGCATGCTCACATTCA
Found at i:87270367 original size:22 final size:22
Alignment explanation
Indices: 87270292--87270367 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
87270282 TCTCATATTC
87270292 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
87270314 ATCACACATAT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGGCCTT
87270338 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
87270361 ATCACAT
1 ATCACAT
87270368 ATATGCATGT
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 12 0.29
23 12 0.29
24 12 0.29
25 5 0.12
ACGTcount: A:0.25, C:0.32, G:0.13, T:0.30
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Done.