Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 263 of 322
Found at i:87270440 original size:25 final size:25
Alignment explanation
Indices: 87270361--87270440 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
87270351 ATTCGGCCTT
*
87270361 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCATATTCACATTC
* * *
87270386 ATCACAT-T-GGC-CATTCGACCTT-
1 ATCACATATATGCATATTC-ACATTC
* *
87270408 ATCTCATATATACATATTCACATTC
1 ATCACATATATGCATATTCACATTC
87270433 ATCACATA
1 ATCACATA
87270441 AAATCCTAAA
Statistics
Matches: 40, Mismatches: 10, Indels: 10
0.67 0.17 0.17
Matches are distributed among these distances:
22 9 0.22
23 7 0.17
24 6 0.15
25 18 0.45
ACGTcount: A:0.33, C:0.26, G:0.06, T:0.35
Consensus pattern (25 bp):
ATCACATATATGCATATTCACATTC
Found at i:87273197 original size:58 final size:57
Alignment explanation
Indices: 87273125--87273235 Score: 150
Period size: 58 Copynumber: 1.9 Consensus size: 57
87273115 TGAATGTGAC
* * **
87273125 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCCTATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGA-TTGGGCCTAAGGGGCCAGATACAGGTGATT
* * *
87273183 TGGGCCTAATGGGCCATATGAATATGATTGGGCTTAAGGGGCCAGATACAGGT
1 TGGGCCTAACGGGCCATATAAATATGATTGGGCCTAAGGGGCCAGATACAGGT
87273236 ATGTGAGTTT
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 22 0.48
58 24 0.52
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (57 bp):
TGGGCCTAACGGGCCATATAAATATGATTGGGCCTAAGGGGCCAGATACAGGTGATT
Found at i:87273224 original size:28 final size:29
Alignment explanation
Indices: 87273112--87273226 Score: 128
Period size: 29 Copynumber: 4.0 Consensus size: 29
87273102 GTGAGCATGA
* *
87273112 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
87273140 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
87273169 CTAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* * *
87273198 ATATGAATATGA-TTGGGCTTAAGGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
87273226 A
1 A
87273227 GATACAGGTA
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
28 27 0.36
29 46 0.62
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:87283602 original size:15 final size:15
Alignment explanation
Indices: 87283584--87283616 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
87283574 TATGTGCTTG
*
87283584 AATTATTACAGTATA
1 AATTATTACAGCATA
87283599 AATTATTACAGCATA
1 AATTATTACAGCATA
87283614 AAT
1 AAT
87283617 GAGATTGTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.48, C:0.09, G:0.06, T:0.36
Consensus pattern (15 bp):
AATTATTACAGCATA
Found at i:87294107 original size:28 final size:28
Alignment explanation
Indices: 87294075--87294130 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
87294065 AGCCCCATGG
* * *
87294075 GCGTGTGGTCTGGCCGTGTGTTCCCTAC
1 GCGTGTGGTCTAGCCGTGCGTCCCCTAC
*
87294103 GCGTGTTGTCTAGCCGTGCGTCCCCTAC
1 GCGTGTGGTCTAGCCGTGCGTCCCCTAC
87294131 ACGTAAAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.05, C:0.32, G:0.32, T:0.30
Consensus pattern (28 bp):
GCGTGTGGTCTAGCCGTGCGTCCCCTAC
Found at i:87294801 original size:42 final size:41
Alignment explanation
Indices: 87294710--87294856 Score: 116
Period size: 42 Copynumber: 3.4 Consensus size: 41
87294700 GTGTTACACG
* * * * * *
87294710 TGGTCTTACATGTAATTAAATATCAATGCCACTGTCCCAAACA
1 TGGTCTTACATG-AAATCAA-ATCGATGGCAATGTCCCAGACA
* * * *
87294753 GGGTCTTACATGAAATCAAATAGGATGTCGATGTCCCAGACA
1 TGGTCTTACATGAAATCAAAT-CGATGGCAATGTCCCAGACA
*
87294795 TGGTCTTACACAT-AAATCTCAAATCGATGGCAACGTCCCAGACA
1 TGGTCTT--ACATGAAA--TCAAATCGATGGCAATGTCCCAGACA
*
87294839 TGGTCTTACACGAAATCA
1 TGGTCTTACATGAAATCA
87294857 CATATCGGAA
Statistics
Matches: 83, Mismatches: 15, Indels: 14
0.74 0.13 0.12
Matches are distributed among these distances:
41 5 0.06
42 28 0.34
43 17 0.20
44 27 0.33
45 6 0.07
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (41 bp):
TGGTCTTACATGAAATCAAATCGATGGCAATGTCCCAGACA
Found at i:87299330 original size:38 final size:38
Alignment explanation
Indices: 87299288--87299367 Score: 135
Period size: 38 Copynumber: 2.1 Consensus size: 38
87299278 AGTGATTCTT
87299288 TTTCTCC-CTTTTTTCTTCTCTAGCCGAAATTACCACTC
1 TTTCTCCAC-TTTTTCTTCTCTAGCCGAAATTACCACTC
*
87299326 TTTCTCCACTTTTTCTTCTCTAGCCGAAATTACCTCTC
1 TTTCTCCACTTTTTCTTCTCTAGCCGAAATTACCACTC
87299364 TTTC
1 TTTC
87299368 CATCCATCTT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
38 39 0.98
39 1 0.03
ACGTcount: A:0.15, C:0.34, G:0.05, T:0.46
Consensus pattern (38 bp):
TTTCTCCACTTTTTCTTCTCTAGCCGAAATTACCACTC
Found at i:87300674 original size:10 final size:10
Alignment explanation
Indices: 87300653--87300699 Score: 78
Period size: 10 Copynumber: 4.7 Consensus size: 10
87300643 CATGAGATTT
87300653 TGATAT-ACA
1 TGATATGACA
87300662 TGATATGACA
1 TGATATGACA
87300672 TGATATGACA
1 TGATATGACA
87300682 TGATATGCACA
1 TGATATG-ACA
87300693 TGATATG
1 TGATATG
87300700 TTATGAGATG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
9 6 0.17
10 20 0.56
11 10 0.28
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (10 bp):
TGATATGACA
Found at i:87300695 original size:21 final size:21
Alignment explanation
Indices: 87300653--87300719 Score: 84
Period size: 21 Copynumber: 3.3 Consensus size: 21
87300643 CATGAGATTT
87300653 TGATAT-ACATGATATG-ACA
1 TGATATGACATGATATGCACA
87300672 TGATATGACATGATATGCACA
1 TGATATGACATGATATGCACA
** *
87300693 TGATATGTTATGAGATGCACA
1 TGATATGACATGATATGCACA
*
87300714 AGATAT
1 TGATAT
87300720 ATTCATTTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.14
20 10 0.24
21 26 0.62
ACGTcount: A:0.39, C:0.10, G:0.19, T:0.31
Consensus pattern (21 bp):
TGATATGACATGATATGCACA
Found at i:87300800 original size:25 final size:25
Alignment explanation
Indices: 87300764--87300836 Score: 110
Period size: 25 Copynumber: 2.9 Consensus size: 25
87300754 GGGGGAAGTG
* *
87300764 CAAAAAGGGCTTTGCCCTAGTTTAC
1 CAAAAAGGGCTTTGCCCCAGTTAAC
* *
87300789 CGAAAAGGGCTTTGCCCCAGTTAAT
1 CAAAAAGGGCTTTGCCCCAGTTAAC
87300814 CAAAAAGGGCTTTGCCCCAGTTA
1 CAAAAAGGGCTTTGCCCCAGTTA
87300837 CTAAAAGAGG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.25
Consensus pattern (25 bp):
CAAAAAGGGCTTTGCCCCAGTTAAC
Found at i:87300848 original size:24 final size:23
Alignment explanation
Indices: 87300766--87300848 Score: 94
Period size: 25 Copynumber: 3.4 Consensus size: 23
87300756 GGGAAGTGCA
* *
87300766 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAG-TTA-CT
*
87300791 AAAAGGGCTTTGCCCCAGTTAATCA
1 AAAAGGGCTTTGCCCCAGTT-A-CT
87300816 AAAAGGGCTTTGCCCCAGTTACT
1 AAAAGGGCTTTGCCCCAGTTACT
87300839 AAAAGAGGCT
1 AAAAG-GGCT
87300849 AGGCCTCCAA
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
23 6 0.12
24 7 0.13
25 39 0.75
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCCAGTTACT
Found at i:87307386 original size:38 final size:38
Alignment explanation
Indices: 87307344--87307423 Score: 142
Period size: 38 Copynumber: 2.1 Consensus size: 38
87307334 AGTGATTATT
87307344 TTTCTCCCCTTTTTCTTCTCTAGCCAAAATTACCACTC
1 TTTCTCCCCTTTTTCTTCTCTAGCCAAAATTACCACTC
* *
87307382 TTTCTCCCCTTTTTCTTCTCTAGCCAAAATTCCCCCTC
1 TTTCTCCCCTTTTTCTTCTCTAGCCAAAATTACCACTC
87307420 TTTC
1 TTTC
87307424 CATCCATCTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.15, C:0.39, G:0.03, T:0.44
Consensus pattern (38 bp):
TTTCTCCCCTTTTTCTTCTCTAGCCAAAATTACCACTC
Found at i:87308721 original size:10 final size:10
Alignment explanation
Indices: 87308700--87308746 Score: 78
Period size: 10 Copynumber: 4.7 Consensus size: 10
87308690 CATGAGATTT
87308700 TGATAT-ACA
1 TGATATGACA
87308709 TGATATGACA
1 TGATATGACA
87308719 TGATATGACA
1 TGATATGACA
87308729 TGATATGCACA
1 TGATATG-ACA
87308740 TGATATG
1 TGATATG
87308747 TTATGAGATG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
9 6 0.17
10 20 0.56
11 10 0.28
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (10 bp):
TGATATGACA
Found at i:87308742 original size:21 final size:21
Alignment explanation
Indices: 87308700--87308766 Score: 84
Period size: 21 Copynumber: 3.3 Consensus size: 21
87308690 CATGAGATTT
87308700 TGATAT-ACATGATATG-ACA
1 TGATATGACATGATATGCACA
87308719 TGATATGACATGATATGCACA
1 TGATATGACATGATATGCACA
** *
87308740 TGATATGTTATGAGATGCACA
1 TGATATGACATGATATGCACA
*
87308761 AGATAT
1 TGATAT
87308767 ATTCATTATA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.14
20 10 0.24
21 26 0.62
ACGTcount: A:0.39, C:0.10, G:0.19, T:0.31
Consensus pattern (21 bp):
TGATATGACATGATATGCACA
Found at i:87308848 original size:25 final size:25
Alignment explanation
Indices: 87308812--87308884 Score: 110
Period size: 25 Copynumber: 2.9 Consensus size: 25
87308802 GGGGGAAGTG
* *
87308812 CAAAAAGGGCTTTTCCCCAGTTTAT
1 CAAAAAGGGCTTTGCCCCAGTTAAT
* *
87308837 CGAAAAGGGCTTAGCCCCAGTTAAT
1 CAAAAAGGGCTTTGCCCCAGTTAAT
87308862 CAAAAAGGGCTTTGCCCCAGTTA
1 CAAAAAGGGCTTTGCCCCAGTTA
87308885 CTAAAAGAGG
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (25 bp):
CAAAAAGGGCTTTGCCCCAGTTAAT
Found at i:87314546 original size:47 final size:47
Alignment explanation
Indices: 87314455--87315456 Score: 1853
Period size: 47 Copynumber: 21.3 Consensus size: 47
87314445 TTATCGCATT
* * * * * *
87314455 TATACACTTTCACATCCATCACGTTGGCCACTCGGCC-CTGTCACATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTC-ATCACATA
* *
87314502 TATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
87314549 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
87314596 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
87314643 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
87314690 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
87314737 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
87314784 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
87314831 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
87314878 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
87314925 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
87314972 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
87315019 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
87315066 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
87315113 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
87315160 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
87315207 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
87315254 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
87315301 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
* *
87315348 TATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
** *
87315395 TATACACTTTCACATTCATCACATCGGTAATTAGGCCTTATCACATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
* *
87315442 TATATACATTCACAT
1 TATACACTTTCACAT
87315457 CACAATTATC
Statistics
Matches: 938, Mismatches: 16, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
47 938 1.00
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.30
Consensus pattern (47 bp):
TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATA
Found at i:87320987 original size:43 final size:43
Alignment explanation
Indices: 87320926--87321100 Score: 167
Period size: 43 Copynumber: 4.1 Consensus size: 43
87320916 AAAGCTCGTA
* *
87320926 CAATGCCAATGTCCCAAACGTGGTCTTACATGTAATCAAATAT
1 CAATGCCAATGTCCCAAACGTGGTCTTACACGAAATCAAATAT
* * *
87320969 CAATGCCACTATCCCAAACAG-GGTCATACACGAAATCAAATA-
1 CAATGCCAATGTCCCAAAC-GTGGTCTTACACGAAATCAAATAT
* * * * **
87321011 CGATGCCGATGTCCCAGACATGGTCTTACACGTAAATC-TCTAAT
1 CAATGCCAATGTCCCAAACGTGGTCTTACACG-AAATCAAAT-AT
* * * *
87321055 CGATGCCAATGTCCCAGACGTGGTCTTACATGAAATCACATAT
1 CAATGCCAATGTCCCAAACGTGGTCTTACACGAAATCAAATAT
87321098 CAA
1 CAA
87321101 AATCCTATGT
Statistics
Matches: 106, Mismatches: 20, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
42 25 0.24
43 50 0.47
44 31 0.29
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.24
Consensus pattern (43 bp):
CAATGCCAATGTCCCAAACGTGGTCTTACACGAAATCAAATAT
Found at i:87326354 original size:35 final size:35
Alignment explanation
Indices: 87326308--87326378 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
87326298 GTAATCCGCT
*
87326308 GATCTCAATTATGAACAAGGATCTAGCCTGAGCGG
1 GATCTCAATTATGAACAAGGATCTAGCCCGAGCGG
87326343 GATCTCAATTATGAACAAGGATCTAGCCCGAGCGG
1 GATCTCAATTATGAACAAGGATCTAGCCCGAGCGG
87326378 G
1 G
87326379 TGTTCCTTTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.21
Consensus pattern (35 bp):
GATCTCAATTATGAACAAGGATCTAGCCCGAGCGG
Found at i:87326366 original size:19 final size:19
Alignment explanation
Indices: 87326308--87326366 Score: 52
Period size: 19 Copynumber: 3.3 Consensus size: 19
87326298 GTAATCCGCT
87326308 GATCTCAATTATGAACAAG
1 GATCTCAATTATGAACAAG
*** * *
87326327 GATCT--AGCCTGAGC-GG
1 GATCTCAATTATGAACAAG
87326343 GATCTCAATTATGAACAAG
1 GATCTCAATTATGAACAAG
87326362 GATCT
1 GATCT
87326367 AGCCCGAGCG
Statistics
Matches: 27, Mismatches: 10, Indels: 6
0.63 0.23 0.14
Matches are distributed among these distances:
16 6 0.22
17 5 0.19
18 5 0.19
19 11 0.41
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (19 bp):
GATCTCAATTATGAACAAG
Found at i:87344188 original size:11 final size:11
Alignment explanation
Indices: 87344172--87344198 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
87344162 ATGATTAAGC
87344172 TATAATCTTGG
1 TATAATCTTGG
87344183 TATAATCTTGG
1 TATAATCTTGG
87344194 TATAA
1 TATAA
87344199 ATGTATAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.33, C:0.07, G:0.15, T:0.44
Consensus pattern (11 bp):
TATAATCTTGG
Found at i:87346852 original size:19 final size:19
Alignment explanation
Indices: 87346828--87346875 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
87346818 ATATTTGGGC
**
87346828 TTAATGGGTTGAAAACGGG
1 TTAATGGGCCGAAAACGGG
* *
87346847 TTAATGGGCCGAAAATGGT
1 TTAATGGGCCGAAAACGGG
87346866 TTAATGGGCC
1 TTAATGGGCC
87346876 AACGGACCCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.29, C:0.10, G:0.33, T:0.27
Consensus pattern (19 bp):
TTAATGGGCCGAAAACGGG
Found at i:87347005 original size:27 final size:27
Alignment explanation
Indices: 87346975--87347036 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 27
87346965 ATTTACTAAA
87346975 ATACCCCTAAGTATG-AAAATTACCATT
1 ATACCCCTAAG-ATGCAAAATTACCATT
* *
87347002 ATACCTCT-AGGTGCAAAATTACCATT
1 ATACCCCTAAGATGCAAAATTACCATT
87347028 ATACCCCTA
1 ATACCCCTA
87347037 GGGTTAATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 2 0.07
26 21 0.70
27 7 0.23
ACGTcount: A:0.37, C:0.26, G:0.08, T:0.29
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATTACCATT
Found at i:87347182 original size:28 final size:27
Alignment explanation
Indices: 87347141--87347227 Score: 122
Period size: 27 Copynumber: 3.2 Consensus size: 27
87347131 GGAGGAAGCG
*
87347141 TTCTGGTGGTTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCAC-AATATCTGT
87347169 TTCTGGTGGCTCTGCCACAATATCTGT
1 TTCTGGTGGCTCTGCCACAATATCTGT
* * *
87347196 ATCTGGTGACTCTGTCACAATATCTG-
1 TTCTGGTGGCTCTGCCACAATATCTGT
87347222 TTCTGG
1 TTCTGG
87347228 CAGCCATGCT
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
26 5 0.09
27 32 0.59
28 17 0.31
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (27 bp):
TTCTGGTGGCTCTGCCACAATATCTGT
Found at i:87350307 original size:48 final size:48
Alignment explanation
Indices: 87350236--87350462 Score: 199
Period size: 48 Copynumber: 4.7 Consensus size: 48
87350226 TAAAGTGCCA
*
87350236 ATGCCATGTCCCT-GACATGGTCTTACA-T-GAATCCACATATCATCCCCG
1 ATGCCATGT-CCTAGACATGGTCTTACACTGGCA--CACATATCATCCCCG
* * *
87350284 ATGCCATATCCTAGACATGGTCTTACACTGGCACACATATCATCGCTG
1 ATGCCATGTCCTAGACATGGTCTTACACTGGCACACATATCATCCCCG
* * * * ** * ** *
87350332 ATGCCATGTCCCAGGCATGGTCTTACACTTGCAAATGTGTCATCGTCA
1 ATGCCATGTCCTAGACATGGTCTTACACTGGCACACATATCATCCCCG
* * * * * *
87350380 ATGCCATGTCCCAAATATGGTCTTACACAGCCACACATATCATCGCCG
1 ATGCCATGTCCTAGACATGGTCTTACACTGGCACACATATCATCCCCG
* * *
87350428 TTGCCATGTCCCAGACATGGTCTTACACAGGCACA
1 ATGCCATGTCCTAGACATGGTCTTACACTGGCACA
87350463 TTTAGCATGG
Statistics
Matches: 145, Mismatches: 31, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
47 3 0.02
48 139 0.96
49 1 0.01
50 2 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCTAGACATGGTCTTACACTGGCACACATATCATCCCCG
Found at i:87356696 original size:17 final size:19
Alignment explanation
Indices: 87356654--87356697 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
87356644 ATGAAATTTT
*
87356654 AATTAGTATTATGAGACAA
1 AATTATTATTATGAGACAA
*
87356673 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGACAA
87356691 AA-TATTA
1 AATTATTA
87356698 CTGTCTGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.02, G:0.09, T:0.39
Consensus pattern (19 bp):
AATTATTATTATGAGACAA
Found at i:87364484 original size:222 final size:222
Alignment explanation
Indices: 87364098--87364545 Score: 869
Period size: 222 Copynumber: 2.0 Consensus size: 222
87364088 TGAGACCACA
*
87364098 AATTAGACTTTAAAATATTTAATTTATGATCATTATGAGGTTTAGAATATGAATATATGCATGTA
1 AATTAGACATTAAAATATTTAATTTATGATCATTATGAGGTTTAGAATATGAATATATGCATGTA
87364163 TTAAAGTTTCATGAAGAAATTCCAAGTATAAGGTGTCCAATTGGAAATTAGGGACTAAATTGAAT
66 TTAAAGTTTCATGAAGAAATTCCAAGTATAAGGTGTCCAATTGGAAATTAGGGACTAAATTGAAT
*
87364228 AAGTTGAAAAATTTGTGTTTTAGAAGCAATTTGTATGTAATTGCTATGGATTATTAATTAGGACG
131 AAGTTGAAAAATTTGTATTTTAGAAGCAATTTGTATGTAATTGCTATGGATTATTAATTAGGACG
87364293 TCTTAAAGAGCAATTTTCCCAATATCT
196 TCTTAAAGAGCAATTTTCCCAATATCT
87364320 AATTAGACATTAAAATATTTAATTTATGATCATTATGAGGTTTAGAATATGAATATATGCATGTA
1 AATTAGACATTAAAATATTTAATTTATGATCATTATGAGGTTTAGAATATGAATATATGCATGTA
87364385 TTAAAGTTTCATGAAGAAATTCCAAGTATAAGGTGTCCAATTGGAAATTAGGGACTAAATTGAAT
66 TTAAAGTTTCATGAAGAAATTCCAAGTATAAGGTGTCCAATTGGAAATTAGGGACTAAATTGAAT
*
87364450 AAGTTGAAAATTTTGTATTTTAGAAGCAATTTGTATGTAATTGCTATGGATTATTAATTAGGACG
131 AAGTTGAAAAATTTGTATTTTAGAAGCAATTTGTATGTAATTGCTATGGATTATTAATTAGGACG
87364515 TCTTAAAGAGCAATTTTCCCAATATCT
196 TCTTAAAGAGCAATTTTCCCAATATCT
87364542 AATT
1 AATT
87364546 TTTTGGACAA
Statistics
Matches: 223, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
222 223 1.00
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.38
Consensus pattern (222 bp):
AATTAGACATTAAAATATTTAATTTATGATCATTATGAGGTTTAGAATATGAATATATGCATGTA
TTAAAGTTTCATGAAGAAATTCCAAGTATAAGGTGTCCAATTGGAAATTAGGGACTAAATTGAAT
AAGTTGAAAAATTTGTATTTTAGAAGCAATTTGTATGTAATTGCTATGGATTATTAATTAGGACG
TCTTAAAGAGCAATTTTCCCAATATCT
Found at i:87378848 original size:40 final size:40
Alignment explanation
Indices: 87378789--87378933 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
87378779 CATTTGAATG
* *
87378789 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGA-T
* *
87378829 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGAT
* *
87378869 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGAT
* * *
87378909 ATACCCGAGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
87378934 ATTGTGCTTG
Statistics
Matches: 95, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
40 92 0.97
41 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGAT
Found at i:87378952 original size:80 final size:80
Alignment explanation
Indices: 87378789--87378960 Score: 204
Period size: 80 Copynumber: 2.2 Consensus size: 80
87378779 CATTTGAATG
* * * * * *
87378789 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGAGCTAAGACCCGAAGGCA
* *
87378854 TTTGTGCGAGTTGAT
66 ATTGTGCGAGTGGAT
* *
87378869 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGAGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGACTATACCCGAGCTAAGACCCGAAGGC
** *
87378933 AATTGTGCTTGTGGTT
65 AATTGTGCGAGTGGAT
87378949 ATATCC-GGCTAA
1 ATATCCGGGCTAA
87378961 ATTCCGAAGA
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 6 0.08
80 70 0.90
81 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGAGCTAAGACCCGAAGGCA
ATTGTGCGAGTGGAT
Found at i:87386961 original size:40 final size:39
Alignment explanation
Indices: 87386902--87387033 Score: 149
Period size: 40 Copynumber: 3.3 Consensus size: 39
87386892 CATTTGAATG
* *
87386902 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTG-TT
* * *
87386942 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGTT
* * * *
87386982 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGT-GTT
87387022 ATATCC-GGCTAA
1 ATATCCGGGCTAA
87387034 ATTCCGAAGA
Statistics
Matches: 76, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
39 6 0.08
40 68 0.89
41 2 0.03
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGTT
Found at i:87387098 original size:86 final size:86
Alignment explanation
Indices: 87386989--87387161 Score: 337
Period size: 86 Copynumber: 2.0 Consensus size: 86
87386979 GCTATACCCG
*
87386989 GGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCGGCTAAATTCCGAAGAAACTTGGGTT
1 GGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCGGCCAAATTCCGAAGAAACTTGGGTT
87387054 TGAAGGTGAGCGTTTTGTGCT
66 TGAAGGTGAGCGTTTTGTGCT
87387075 GGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCGGCCAAATTCCGAAGAAACTTGGGTT
1 GGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCGGCCAAATTCCGAAGAAACTTGGGTT
87387140 TGAAGGTGAGCGTTTTGTGCT
66 TGAAGGTGAGCGTTTTGTGCT
87387161 G
1 G
87387162 TAATAAATTC
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
86 86 1.00
ACGTcount: A:0.23, C:0.16, G:0.31, T:0.31
Consensus pattern (86 bp):
GGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCGGCCAAATTCCGAAGAAACTTGGGTT
TGAAGGTGAGCGTTTTGTGCT
Found at i:87388807 original size:16 final size:16
Alignment explanation
Indices: 87388783--87388825 Score: 59
Period size: 18 Copynumber: 2.6 Consensus size: 16
87388773 TAAAAACAAT
*
87388783 TTAAGATATAAATTTA
1 TTAATATATAAATTTA
87388799 TTAATATATATAAATTTA
1 TT-A-ATATATAAATTTA
87388817 TTAATATAT
1 TTAATATAT
87388826 GTAAAAACAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 8 0.33
17 2 0.08
18 14 0.58
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (16 bp):
TTAATATATAAATTTA
Found at i:87388809 original size:18 final size:18
Alignment explanation
Indices: 87388788--87388830 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
87388778 ACAATTTAAG
87388788 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
87388806 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
*
87388824 ATGTAAA
1 ATATAAA
87388831 AACAGCTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
ATATAAATTTATTAATAT
Found at i:87392824 original size:20 final size:20
Alignment explanation
Indices: 87392775--87392831 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 20
87392765 AGTTTATGTT
** * *
87392775 AAGTAAATAAAATGGAAAGT
1 AAGTAAATGGAATGGTAAGA
*
87392795 AAGTAGATGGAATGGTAAGA
1 AAGTAAATGGAATGGTAAGA
*
87392815 AAGTAAATGGAGTGGTA
1 AAGTAAATGGAATGGTA
87392832 CATAGTTTAT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.49, C:0.00, G:0.30, T:0.21
Consensus pattern (20 bp):
AAGTAAATGGAATGGTAAGA
Found at i:87400134 original size:48 final size:48
Alignment explanation
Indices: 87400063--87400400 Score: 559
Period size: 48 Copynumber: 7.0 Consensus size: 48
87400053 CAAGATAAAT
* * *
87400063 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
87400111 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
87400159 ATATATATATGTGGTAAAGCCAAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
87400207 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
87400255 GTATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
87400303 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
87400351 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
87400399 AT
1 AT
87400401 GTGTGTATAT
Statistics
Matches: 268, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 268 1.00
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:87400332 original size:144 final size:144
Alignment explanation
Indices: 87400063--87400400 Score: 622
Period size: 144 Copynumber: 2.3 Consensus size: 144
87400053 CAAGATAAAT
* *
87400063 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
87400128 AGCCGAATGGCTAATATGAAATATGTATGAGATATATATATGTGGTAAAGCCAAATGGCTAATGT
66 AGCCGAATGGCTAATATGAAATATGTATGAGATATATATATGTGGTAAAGCCAAATGGCTAATGT
87400193 GAAATATATATGAG
131 GAAATATATATGAG
*
87400207 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGGTATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
*
87400272 AGCCGAATGGCTAATATGAAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAATGT
66 AGCCGAATGGCTAATATGAAATATGTATGAGATATATATATGTGGTAAAGCCAAATGGCTAATGT
87400337 GAAATATATATGAG
131 GAAATATATATGAG
* *
87400351 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGAT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
87400401 GTGTGTATAT
Statistics
Matches: 187, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
144 187 1.00
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31
Consensus pattern (144 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAATATGAAATATGTATGAGATATATATATGTGGTAAAGCCAAATGGCTAATGT
GAAATATATATGAG
Found at i:87400594 original size:37 final size:37
Alignment explanation
Indices: 87400541--87400643 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
87400531 GGAAATATAT
*
87400541 TCCGGGTAAGACCCGATGACTATGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
87400578 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
87400615 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
87400644 GGACTATTCG
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:87403922 original size:34 final size:34
Alignment explanation
Indices: 87403884--87403965 Score: 119
Period size: 34 Copynumber: 2.4 Consensus size: 34
87403874 CTGATATGTT
* *
87403884 AATGGGCTTAGGCCCAGACTGCTACTGTTACTGA
1 AATGGGCTAAGGCCCAAACTGCTACTGTTACTGA
* *
87403918 AATGGGCTCAGGCCCAAACTGCTACTGTTATTGA
1 AATGGGCTAAGGCCCAAACTGCTACTGTTACTGA
*
87403952 AATAGGCTAAGGCC
1 AATGGGCTAAGGCC
87403966 TAACTAATAC
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 43 1.00
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (34 bp):
AATGGGCTAAGGCCCAAACTGCTACTGTTACTGA
Found at i:87406491 original size:27 final size:27
Alignment explanation
Indices: 87406460--87406513 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
87406450 TGAAACATGT
87406460 CAACTTAATTTCCATATGCTTTATCAA
1 CAACTTAATTTCCATATGCTTTATCAA
*
87406487 CAACTTAATTTTCATATGCTTTATCAA
1 CAACTTAATTTCCATATGCTTTATCAA
87406514 TACCAAGAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (27 bp):
CAACTTAATTTCCATATGCTTTATCAA
Found at i:87412745 original size:18 final size:18
Alignment explanation
Indices: 87412722--87412842 Score: 170
Period size: 18 Copynumber: 6.7 Consensus size: 18
87412712 CTTGGCCCGT
* *
87412722 TGTAGTAACAATAAACAG
1 TGTAGTAACAGTAATCAG
87412740 TGTAGTAACAGTAATCAG
1 TGTAGTAACAGTAATCAG
*
87412758 TGCAGTAACAGTAATCAG
1 TGTAGTAACAGTAATCAG
*
87412776 TGTAGTAGCAGTAATCAG
1 TGTAGTAACAGTAATCAG
* *
87412794 TGCAGTAATAGTAATCAG
1 TGTAGTAACAGTAATCAG
*
87412812 TGTAGTAATAGTAATCAG
1 TGTAGTAACAGTAATCAG
*
87412830 TGCAGTAACAGTA
1 TGTAGTAACAGTA
87412843 TACAAGCCCT
Statistics
Matches: 92, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 92 1.00
ACGTcount: A:0.40, C:0.12, G:0.22, T:0.26
Consensus pattern (18 bp):
TGTAGTAACAGTAATCAG
Found at i:87412765 original size:12 final size:13
Alignment explanation
Indices: 87412743--87412806 Score: 50
Period size: 12 Copynumber: 5.3 Consensus size: 13
87412733 TAAACAGTGT
*
87412743 AGTAACAGTAATC
1 AGTAGCAGTAATC
87412756 AGT-GCAGTAA-C
1 AGTAGCAGTAATC
* *
87412767 AGTAATCAGT-GT-
1 AGT-AGCAGTAATC
87412779 AGTAGCAGTAATC
1 AGTAGCAGTAATC
87412792 AGT-GCAGTAAT-
1 AGTAGCAGTAATC
87412803 AGTA
1 AGTA
87412807 ATCAGTGTAG
Statistics
Matches: 40, Mismatches: 5, Indels: 13
0.69 0.09 0.22
Matches are distributed among these distances:
11 12 0.30
12 18 0.45
13 10 0.25
ACGTcount: A:0.39, C:0.12, G:0.23, T:0.25
Consensus pattern (13 bp):
AGTAGCAGTAATC
Found at i:87412777 original size:36 final size:36
Alignment explanation
Indices: 87412725--87412842 Score: 191
Period size: 36 Copynumber: 3.3 Consensus size: 36
87412715 GGCCCGTTGT
* *
87412725 AGTAACAATAAACAGTGTAGTAACAGTAATCAGTGC
1 AGTAACAGTAATCAGTGTAGTAACAGTAATCAGTGC
*
87412761 AGTAACAGTAATCAGTGTAGTAGCAGTAATCAGTGC
1 AGTAACAGTAATCAGTGTAGTAACAGTAATCAGTGC
* *
87412797 AGTAATAGTAATCAGTGTAGTAATAGTAATCAGTGC
1 AGTAACAGTAATCAGTGTAGTAACAGTAATCAGTGC
87412833 AGTAACAGTA
1 AGTAACAGTA
87412843 TACAAGCCCT
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 75 1.00
ACGTcount: A:0.41, C:0.12, G:0.22, T:0.25
Consensus pattern (36 bp):
AGTAACAGTAATCAGTGTAGTAACAGTAATCAGTGC
Found at i:87413195 original size:27 final size:26
Alignment explanation
Indices: 87413160--87413441 Score: 291
Period size: 27 Copynumber: 10.6 Consensus size: 26
87413150 TACATCATAT
* * *
87413160 AGGGAAAAACAATCATCTTACCATATA
1 AGGGCAAAACAGTCATTTTACC-TATA
87413187 AGGGCAAAACAGTCATTTTATCAC-AT-
1 AGGGCAAAACAGTCATTTTA-C-CTATA
* *
87413213 AGGGCAAAATAGTCATTTTATCCCATA
1 AGGGCAAAACAGTCATTTTA-CCTATA
** *
87413240 AAAGCAAAACAATCATTTTACCTCATA
1 AGGGCAAAACAGTCATTTTACCT-ATA
*
87413267 AGGGCAAAACAGTCATTTTACC-ACA
1 AGGGCAAAACAGTCATTTTACCTATA
* *
87413292 AAGGCAAAACAGTCATTTTACCTCATG
1 AGGGCAAAACAGTCATTTTACCT-ATA
* *
87413319 AGGGCAAAACAATCATTTTACCTCATG
1 AGGGCAAAACAGTCATTTTACCT-ATA
* *
87413346 GGGGCAAATCAGTCATTTTACCTCATA
1 AGGGCAAAACAGTCATTTTACCT-ATA
*
87413373 AGGGCAAAACAGTCATTTTACCCCATA
1 AGGGCAAAACAGTCATTTTA-CCTATA
*
87413400 AGGGCAAAACAGTCATTTTACCTCATG
1 AGGGCAAAACAGTCATTTTACCT-ATA
*
87413427 AGGGCAAAGCAGTCA
1 AGGGCAAAACAGTCA
87413442 AACAATGAAA
Statistics
Matches: 218, Mismatches: 28, Indels: 18
0.83 0.11 0.07
Matches are distributed among these distances:
25 24 0.11
26 27 0.12
27 163 0.75
28 3 0.01
29 1 0.00
ACGTcount: A:0.39, C:0.22, G:0.15, T:0.24
Consensus pattern (26 bp):
AGGGCAAAACAGTCATTTTACCTATA
Found at i:87413283 original size:54 final size:53
Alignment explanation
Indices: 87413154--87413441 Score: 339
Period size: 54 Copynumber: 5.4 Consensus size: 53
87413144 TATATATACA
* * * *
87413154 TCATATAGGGAAAAACAATCATCTTA-CCATATAAGGGCAAAACAGTCATTTTATC
1 TCATA-AGGGCAAAACAGTCATTTTACCCATA-AA-GGCAAAACAGTCATTTTACC
* * * *
87413209 ACAT-AGGGCAAAATAGTCATTTTATCCCATAAAAGCAAAACAATCATTTTACC
1 TCATAAGGGCAAAACAGTCATTTTA-CCCATAAAGGCAAAACAGTCATTTTACC
*
87413262 TCATAAGGGCAAAACAGTCATTTTA-CCACAAAGGCAAAACAGTCATTTTACC
1 TCATAAGGGCAAAACAGTCATTTTACCCATAAAGGCAAAACAGTCATTTTACC
* * *** *
87413314 TCATGAGGGCAAAACAATCATTTTACCTCATGGGGGCAAATCAGTCATTTTACC
1 TCATAAGGGCAAAACAGTCATTTTACC-CATAAAGGCAAAACAGTCATTTTACC
*
87413368 TCATAAGGGCAAAACAGTCATTTTACCCCATAAGGGCAAAACAGTCATTTTACC
1 TCATAAGGGCAAAACAGTCATTTTA-CCCATAAAGGCAAAACAGTCATTTTACC
* *
87413422 TCATGAGGGCAAAGCAGTCA
1 TCATAAGGGCAAAACAGTCA
87413442 AACAATGAAA
Statistics
Matches: 200, Mismatches: 27, Indels: 13
0.83 0.11 0.05
Matches are distributed among these distances:
52 47 0.23
53 37 0.19
54 106 0.53
55 10 0.05
ACGTcount: A:0.39, C:0.22, G:0.15, T:0.25
Consensus pattern (53 bp):
TCATAAGGGCAAAACAGTCATTTTACCCATAAAGGCAAAACAGTCATTTTACC
Found at i:87422286 original size:57 final size:58
Alignment explanation
Indices: 87422216--87422326 Score: 152
Period size: 58 Copynumber: 1.9 Consensus size: 58
87422206 AAATTCACAT
* * *
87422216 ACCTGTATCTGGCCCATTAAGCCC-AATCATATTCATATGGCCTATTAGGCCCAAACC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAACC
* ** *
87422273 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTTTATGGCCCGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCA
87422327 GACACATTCA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 22 0.48
58 24 0.52
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAACC
Found at i:87422291 original size:29 final size:29
Alignment explanation
Indices: 87422219--87422326 Score: 112
Period size: 29 Copynumber: 3.8 Consensus size: 29
87422209 TTCACATACC
* * *
87422219 TGTATCTGGCCCATTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* * *
87422247 T-TCATATGGCCTATTAGGCCCAAACCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
87422276 TGTATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* * *
87422305 TTTTTATGGCCCGTTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
87422327 GACACATTCA
Statistics
Matches: 65, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
27 1 0.02
28 16 0.25
29 47 0.72
30 1 0.02
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.28
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:87422571 original size:16 final size:16
Alignment explanation
Indices: 87422550--87422581 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
87422540 CCAAACTTTT
87422550 AGCTTTTCGACATTTC
1 AGCTTTTCGACATTTC
*
87422566 AGCTTTTCGGCATTTC
1 AGCTTTTCGACATTTC
87422582 GGCATTTCGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.25, G:0.16, T:0.44
Consensus pattern (16 bp):
AGCTTTTCGACATTTC
Found at i:87422589 original size:16 final size:16
Alignment explanation
Indices: 87422554--87422592 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
87422544 ACTTTTAGCT
* *
87422554 TTTCGACATTTCAGCT
1 TTTCGGCATTTCAGCA
*
87422570 TTTCGGCATTTCGGCA
1 TTTCGGCATTTCAGCA
87422586 TTTCGGC
1 TTTCGGC
87422593 TTTTGCCAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.13, C:0.26, G:0.21, T:0.41
Consensus pattern (16 bp):
TTTCGGCATTTCAGCA
Found at i:87428528 original size:40 final size:40
Alignment explanation
Indices: 87428473--87428664 Score: 235
Period size: 40 Copynumber: 4.8 Consensus size: 40
87428463 ATAACCACAA
* * * *
87428473 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
87428513 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
87428553 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * * *
87428593 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * *
87428633 GGATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
87428665 CATTCAAATG
Statistics
Matches: 141, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 136 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:87438246 original size:46 final size:46
Alignment explanation
Indices: 87438125--87438248 Score: 203
Period size: 46 Copynumber: 2.7 Consensus size: 46
87438115 AACCCACCCC
* * * *
87438125 TAAGTGATCTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
87438171 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
87438217 TAAGTGAACTCGGACTCAACTCAATGAGTTCG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCG
87438249 AATGCTCAAC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:87443718 original size:93 final size:93
Alignment explanation
Indices: 87443611--87443779 Score: 275
Period size: 93 Copynumber: 1.8 Consensus size: 93
87443601 CCCTAAGTGT
*** *
87443611 ACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCACCCATAAGTGAACTCGGACTCAACTCAAGG
1 ACTCGGACTCAACTCAACAAGCTCGGAAATTCGCACCCATAAGTGAACTCGGACTCAACTCAACG
87443676 AGTTCGGATGCCTAGTTACATTTCATGA
66 AGTTCGGATGCCTAGTTACATTTCATGA
* * *
87443704 ACTCGGACTCAACTCAACGAGTTCGGAAATTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
1 ACTCGGACTCAACTCAACAAGCTCGGAAATTCGCACCCATAAGTGAACTCGGACTCAACTCAACG
87443769 AGTTCGGATGC
66 AGTTCGGATGC
87443780 TCAACCATCC
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
ACTCGGACTCAACTCAACAAGCTCGGAAATTCGCACCCATAAGTGAACTCGGACTCAACTCAACG
AGTTCGGATGCCTAGTTACATTTCATGA
Found at i:87443776 original size:46 final size:45
Alignment explanation
Indices: 87443604--87443776 Score: 172
Period size: 46 Copynumber: 3.8 Consensus size: 45
87443594 AACCCGCCCC
* * * ** *
87443604 TAAGTGTACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCACCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGAATTCGCATCCA
* * *
87443650 TAAGTGAACTCGGACTCAACTCAAGGAGTTCGG-ATGC-CTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATTCGC-A--TCCA
*
87443696 TTTCA-TGAACTCGGACTCAACTCAACGAGTTCGGAAATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-AATTCGCATCCA
87443743 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
87443777 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 13, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 5 0.05
46 58 0.55
47 31 0.30
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATTCGCATCCA
Found at i:87445646 original size:27 final size:27
Alignment explanation
Indices: 87445616--87445697 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 27
87445606 TAACATGAAC
*
87445616 GAATGCCTTTGTGGCAAACTTTGTAAG
1 GAATGCCTTTGTGGCAAACTCTGTAAG
***
87445643 GAATTAATTTGTGGCAAACTCTGTAAG
1 GAATGCCTTTGTGGCAAACTCTGTAAG
* *
87445670 GAATGCCTTCGTGGCACACTCT-TAAG
1 GAATGCCTTTGTGGCAAACTCTGTAAG
87445696 GA
1 GA
87445698 CCGCCCTTAC
Statistics
Matches: 46, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
26 6 0.13
27 40 0.87
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.30
Consensus pattern (27 bp):
GAATGCCTTTGTGGCAAACTCTGTAAG
Found at i:87447538 original size:48 final size:48
Alignment explanation
Indices: 87447396--87447578 Score: 166
Period size: 48 Copynumber: 3.9 Consensus size: 48
87447386 CACGTAGTAA
*
87447396 GATGCCAATGCCATATCCCAAATATGGTCTTACATGGGAT--CAT-T-
1 GATGCCAATGCCATATCCCAAACATGGTCTTACATGGGATCACATATC
* * * * * * *
87447440 GAT-CGAA-GCCGATA-GCCTAGCTATGGCCTTACATGATG-TCTCATATC
1 GATGCCAATGCC-ATATCCCAAAC-ATGGTCTTACATG-GGATCACATATC
*** *
87447487 GATGCCAATGCCATATCCCATGTATGTTCTTACATGGGATCACATATC
1 GATGCCAATGCCATATCCCAAACATGGTCTTACATGGGATCACATATC
*
87447535 GATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACA
1 GATGCCAATGCCATATCCCAAACATGGTCTTACATGGGATCACA
87447579 CATAACCCTA
Statistics
Matches: 107, Mismatches: 21, Indels: 18
0.73 0.14 0.12
Matches are distributed among these distances:
42 6 0.06
43 19 0.18
44 4 0.04
45 3 0.03
46 1 0.01
47 4 0.04
48 64 0.60
49 6 0.06
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAAACATGGTCTTACATGGGATCACATATC
Found at i:87455419 original size:48 final size:48
Alignment explanation
Indices: 87455361--87455698 Score: 559
Period size: 48 Copynumber: 7.0 Consensus size: 48
87455351 ATATACACAC
* * *
87455361 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
87455409 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACGTATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
87455457 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
87455505 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
87455553 ACCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
87455601 ATCTCATATATATTTCATATTAGCCATTCGTCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
87455649 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
87455697 AT
1 AT
87455699 ATTTATCTTG
Statistics
Matches: 269, Mismatches: 21, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 269 1.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:87459617 original size:27 final size:26
Alignment explanation
Indices: 87459577--87459658 Score: 101
Period size: 27 Copynumber: 3.1 Consensus size: 26
87459567 AACATGGCTG
* * *
87459577 CCAGAACAAATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
* *
87459603 CCAGATATAGATATTGTGGCAAAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
87459630 CCAGAACAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
87459657 CC
1 CC
87459659 GGTATACTCC
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
26 11 0.23
27 36 0.77
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:87462900 original size:25 final size:25
Alignment explanation
Indices: 87462866--87462914 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
87462856 CAAATAATCC
87462866 ATACTTTGAAAACCCGTCTTTCCCG
1 ATACTTTGAAAACCCGTCTTTCCCG
87462891 ATACTTTGAAAACCCGTCTTTCCC
1 ATACTTTGAAAACCCGTCTTTCCC
87462915 TAGACTAGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.24, C:0.33, G:0.10, T:0.33
Consensus pattern (25 bp):
ATACTTTGAAAACCCGTCTTTCCCG
Found at i:87464951 original size:46 final size:46
Alignment explanation
Indices: 87464884--87465012 Score: 204
Period size: 46 Copynumber: 2.8 Consensus size: 46
87464874 TGTAACCCGC
* * * * *
87464884 CCATAAGCGAACTCGAACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
87464930 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
*
87464976 CCATAAGTGAACGCGGACTCAACTCAACGAGTTCAGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGA
87465013 TGCTCAATCA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.33, C:0.29, G:0.19, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
Found at i:87465959 original size:146 final size:146
Alignment explanation
Indices: 87465695--87465985 Score: 564
Period size: 146 Copynumber: 2.0 Consensus size: 146
87465685 TATTCTATCA
*
87465695 TAAAACATCAAAATACACAAATTTCACCTATGGGTATTTTTCCAAATATAAACCCTAGGTTAAAT
1 TAAAACATCAAAATACACAAATTTCACCTATGGGTATTTTTCCAAATATAAACCCTAGATTAAAT
87465760 TATTGCTAACATAAGCTTTATCGAGTTACAGGGATCTCAAAATCGTAAAAATCATTAAAAACGGG
66 TATTGCTAACATAAGCTTTATCGAGTTACAGGGATCTCAAAATCGTAAAAATCATTAAAAACGGG
87465825 GCTTGGAATCACTTAT
131 GCTTGGAATCACTTAT
87465841 TAAAACATCAAAATACACAAATTTCACCTATGGGTATTTTTCCAAATATAAACCCTAGATTAAAT
1 TAAAACATCAAAATACACAAATTTCACCTATGGGTATTTTTCCAAATATAAACCCTAGATTAAAT
*
87465906 TATTGCTAACATAAGCTTTATCGAGTTACCGGGATCTCAAAATCGTAAAAATCATTAAAAACGGG
66 TATTGCTAACATAAGCTTTATCGAGTTACAGGGATCTCAAAATCGTAAAAATCATTAAAAACGGG
87465971 GCTTGGAATCACTTA
131 GCTTGGAATCACTTA
87465986 CTATGGAGCT
Statistics
Matches: 143, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
146 143 1.00
ACGTcount: A:0.40, C:0.18, G:0.13, T:0.30
Consensus pattern (146 bp):
TAAAACATCAAAATACACAAATTTCACCTATGGGTATTTTTCCAAATATAAACCCTAGATTAAAT
TATTGCTAACATAAGCTTTATCGAGTTACAGGGATCTCAAAATCGTAAAAATCATTAAAAACGGG
GCTTGGAATCACTTAT
Found at i:87474245 original size:26 final size:26
Alignment explanation
Indices: 87474216--87474265 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
87474206 TCACATTGTA
*
87474216 TGCCCATTGGAGTTTATTCATTCATC
1 TGCCCATTGGAGTTCATTCATTCATC
*
87474242 TGCCCATTGGTGTTCATTCATTCA
1 TGCCCATTGGAGTTCATTCATTCA
87474266 CATCATTTCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.18, C:0.24, G:0.16, T:0.42
Consensus pattern (26 bp):
TGCCCATTGGAGTTCATTCATTCATC
Found at i:87479473 original size:40 final size:40
Alignment explanation
Indices: 87479418--87479609 Score: 255
Period size: 40 Copynumber: 4.8 Consensus size: 40
87479408 CGGATGATAA
* *
87479418 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
*
87479458 CCGGGCTAGGTCCCGAAGGCA-TTGTTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACTAATT
87479498 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-T
**
87479538 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-T
* * * *
87479578 CCAGGCTAAGTCCCAAAGGCATTCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
87479610 AGCTATATCC
Statistics
Matches: 137, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
39 5 0.04
40 129 0.94
41 3 0.02
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
Found at i:87479551 original size:80 final size:80
Alignment explanation
Indices: 87479418--87479635 Score: 266
Period size: 80 Copynumber: 2.7 Consensus size: 80
87479408 CGGATGATAA
* * *
87479418 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAGGTCCCGAAGGCA-TT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTT
**
87479481 GTTGCGAGTTACTA-ATT
65 G-TGCGAACTACTATA-T
87479498 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
87479563 TGCGAACTACTATAT
66 TGCGAACTACTATAT
* * * * * *
87479578 CCAGGCTAAGTCCCAAAGGCATTCGAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
87479636 TACTTGGTTT
Statistics
Matches: 123, Mismatches: 11, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
79 16 0.13
80 102 0.83
81 5 0.04
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAACTACTATAT
Found at i:87479616 original size:40 final size:39
Alignment explanation
Indices: 87479421--87479635 Score: 231
Period size: 40 Copynumber: 5.4 Consensus size: 39
87479411 ATGATAACCG
* *
87479421 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATA-TCCA
* *
87479461 GGCTAGGTCCCGAAGGCA-TTGTTGCGAGTTACTA-ATTCCG
1 GGCTAAGTCCCGAAGGCATTTG-TGCGAG-TACTATA-TCCA
*
87479501 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCA
*
87479541 GGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCCA
1 GGCTAAGTCCCGAAGGCATTTGTGCG-AGTACTATATCCA
* * *
87479581 GGCTAAGTCCCAAAGGCATTCGAGCGAGTAGCTATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATATCCA
* *
87479620 GGTTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
87479636 TACTTGGTTT
Statistics
Matches: 157, Mismatches: 12, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
39 19 0.12
40 132 0.84
41 6 0.04
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCA
Found at i:87500356 original size:40 final size:40
Alignment explanation
Indices: 87499678--87500342 Score: 1158
Period size: 40 Copynumber: 16.6 Consensus size: 40
87499668 TCGAATGATG
* * * * *
87499678 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
87499718 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
87499758 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
87499797 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
87499837 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
87499877 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
87499917 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
87499957 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
87499997 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
87500037 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
87500077 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
87500117 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
87500157 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
87500197 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
87500237 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
87500277 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
87500318 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
87500343 AACGAGTAGC
Statistics
Matches: 605, Mismatches: 15, Indels: 10
0.96 0.02 0.02
Matches are distributed among these distances:
39 34 0.06
40 561 0.93
41 10 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:87500616 original size:40 final size:40
Alignment explanation
Indices: 87500431--87500602 Score: 301
Period size: 40 Copynumber: 4.3 Consensus size: 40
87500421 ATACGCTTGA
87500431 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCC
87500471 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCC
87500511 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCC
* * *
87500551 CGAAGGCATTTCTGCGAGTTACTATAA-CCGGGCTATGTCC
1 CGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAGTCC
87500591 CGAAGGCATTTG
1 CGAAGGCATTTG
87500603 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
40 125 0.98
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCC
Found at i:87500632 original size:260 final size:260
Alignment explanation
Indices: 87500171--87500690 Score: 1031
Period size: 260 Copynumber: 2.0 Consensus size: 260
87500161 GGTTAAGTCC
87500171 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
87500236 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
66 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
*
87500301 TGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAA
131 TCTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAA
87500366 ATTCCGAAGGTACGTGATTTGGGAATGAATGATCTTGCTGTAAAAATTTCAGTTAATACGCTTGA
196 ATTCCGAAGGTACGTGATTTGGGAATGAATGATCTTGCTGTAAAAATTTCAGTTAATACGCTTGA
87500431 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
87500496 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
66 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
87500561 TCTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAA
131 TCTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAA
87500626 ATTCCGAAGGTACGTGATTTGGGAATGAATGATCTTGCTGTAAAAATTTCAGTTAATACGCTTGA
196 ATTCCGAAGGTACGTGATTTGGGAATGAATGATCTTGCTGTAAAAATTTCAGTTAATACGCTTGA
87500691 AACATCCCAA
Statistics
Matches: 259, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
260 259 1.00
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (260 bp):
CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
TCTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAA
ATTCCGAAGGTACGTGATTTGGGAATGAATGATCTTGCTGTAAAAATTTCAGTTAATACGCTTGA
Found at i:87504909 original size:19 final size:20
Alignment explanation
Indices: 87504872--87504909 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
87504862 ATAAGGTGGT
87504872 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
87504892 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
87504910 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:87507988 original size:16 final size:17
Alignment explanation
Indices: 87507969--87508012 Score: 56
Period size: 16 Copynumber: 2.7 Consensus size: 17
87507959 GGCAAAAGCT
* *
87507969 GAAATGCCGAAAAT-TC
1 GAAAAGCCGAAAATGCC
87507985 GAAAAGCC-AAAATGCC
1 GAAAAGCCGAAAATGCC
87508001 GAAAAGCCGAAA
1 GAAAAGCCGAAA
87508013 GTTGGGCTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 5 0.21
16 16 0.67
17 3 0.12
ACGTcount: A:0.50, C:0.20, G:0.20, T:0.09
Consensus pattern (17 bp):
GAAAAGCCGAAAATGCC
Found at i:87508011 original size:8 final size:8
Alignment explanation
Indices: 87507962--87508012 Score: 50
Period size: 8 Copynumber: 6.4 Consensus size: 8
87507952 ATGAATCGGC
*
87507962 AAAAGCTG
1 AAAAGCCG
*
87507970 AAATGCCG
1 AAAAGCCG
**
87507978 AAAATTCG
1 AAAAGCCG
87507986 AAAAGCC-
1 AAAAGCCG
87507993 AAAATGCCG
1 AAAA-GCCG
87508002 AAAAGCCG
1 AAAAGCCG
87508010 AAA
1 AAA
87508013 GTTGGGCTAC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
7 4 0.12
8 26 0.76
9 4 0.12
ACGTcount: A:0.51, C:0.20, G:0.20, T:0.10
Consensus pattern (8 bp):
AAAAGCCG
Found at i:87508278 original size:29 final size:29
Alignment explanation
Indices: 87508228--87508299 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 29
87508218 GCATGAATAT
* * *
87508228 AATATGATTTGGGCCTAATGGGCCATACG
1 AATATGAATTGGGCATAATGGGCCATAAG
* * *
87508257 AATGTGACTTGGGCATAGTGGGCCATAAG
1 AATATGAATTGGGCATAATGGGCCATAAG
87508286 AATATGAATTGGGC
1 AATATGAATTGGGC
87508300 CAGATGGGCC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.26
Consensus pattern (29 bp):
AATATGAATTGGGCATAATGGGCCATAAG
Found at i:87508307 original size:29 final size:28
Alignment explanation
Indices: 87508228--87508328 Score: 89
Period size: 29 Copynumber: 3.5 Consensus size: 28
87508218 GCATGAATAT
* *
87508228 AATATGATTTGGGCCTAATGGGCCATACG
1 AATATGAATTGGGCC-AATGGGCCATAAG
* *
87508257 AATGTGACTTGGG-CATAGTGGGCCATAAG
1 AATATGAATTGGGCCA-A-TGGGCCATAAG
**
87508286 AATATGAATTGGGCCAGATGGGCCATTTG
1 AATATGAATTGGGCCA-ATGGGCCATAAG
*
87508315 AATAAG-ATTGGGCC
1 AATATGAATTGGGCC
87508329 TAGTAGTCTA
Statistics
Matches: 60, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
27 1 0.02
28 10 0.17
29 46 0.77
30 3 0.05
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.26
Consensus pattern (28 bp):
AATATGAATTGGGCCAATGGGCCATAAG
Found at i:87521844 original size:40 final size:43
Alignment explanation
Indices: 87521771--87521860 Score: 114
Period size: 42 Copynumber: 2.2 Consensus size: 43
87521761 TAAACTGTAT
*
87521771 CTATCTCAATATCGCACACTTAGTG-C-CACATATAGCCGAAG
1 CTATCTCAATATCGCACACTAAGTGTCACACATATAGCCGAAG
* * * *
87521812 CTATTTCAAT-TCGCACACTAAGTGTTATATATATAGCCGAAG
1 CTATCTCAATATCGCACACTAAGTGTCACACATATAGCCGAAG
87521854 CTATCTC
1 CTATCTC
87521861 GAAACGCACA
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
40 13 0.32
41 9 0.22
42 19 0.46
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.30
Consensus pattern (43 bp):
CTATCTCAATATCGCACACTAAGTGTCACACATATAGCCGAAG
Found at i:87522643 original size:36 final size:36
Alignment explanation
Indices: 87522596--87522670 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
87522586 TTCTTTCTCT
87522596 TTTAATTTTGTTCAAAAAGATGAATAAAGATGAACA
1 TTTAATTTTGTTCAAAAAGATGAATAAAGATGAACA
87522632 TTTAATTTTGTTCAAAAAGATGAATAAAGATGAACA
1 TTTAATTTTGTTCAAAAAGATGAATAAAGATGAACA
87522668 TTT
1 TTT
87522671 GGCTTTATTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.45, C:0.05, G:0.13, T:0.36
Consensus pattern (36 bp):
TTTAATTTTGTTCAAAAAGATGAATAAAGATGAACA
Found at i:87526088 original size:17 final size:18
Alignment explanation
Indices: 87526066--87526099 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
87526056 CACATTGAAG
87526066 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
87526083 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
87526100 CTTCTTTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:87527364 original size:28 final size:28
Alignment explanation
Indices: 87527318--87527414 Score: 115
Period size: 28 Copynumber: 3.5 Consensus size: 28
87527308 TGGCCTCTTT
* *
87527318 AGGCCCAATCTCATTCATATGGCCCATC
1 AGGCCCAATCACATACATATGGCCCATC
87527346 -GAGCCCAATCACATACATATGGCCCATC
1 AG-GCCCAATCACATACATATGGCCCATC
* ** *
87527374 AGGCCCAATCACTTTGATATGGCCCGTC
1 AGGCCCAATCACATACATATGGCCCATC
*
87527402 AGGCCCAGTCACA
1 AGGCCCAATCACA
87527415 CTCTTAGTCA
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
27 1 0.02
28 57 0.97
29 1 0.02
ACGTcount: A:0.27, C:0.35, G:0.18, T:0.21
Consensus pattern (28 bp):
AGGCCCAATCACATACATATGGCCCATC
Found at i:87535099 original size:28 final size:28
Alignment explanation
Indices: 87535068--87535154 Score: 93
Period size: 28 Copynumber: 3.1 Consensus size: 28
87535058 CATCTGATTT
***
87535068 ATATGGCCCATTGGGCCCAATCACATTC
1 ATATGGCCCATCAAGCCCAATCACATTC
* *
87535096 ATATGACCCATCAAGCCCAATCACTTTC
1 ATATGGCCCATCAAGCCCAATCACATTC
* * * *
87535124 ATATGGCCCGTCAGGTCCAATCACACTC
1 ATATGGCCCATCAAGCCCAATCACATTC
87535152 ATA
1 ATA
87535155 GTCATGCAAT
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 48 1.00
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (28 bp):
ATATGGCCCATCAAGCCCAATCACATTC
Found at i:87535690 original size:20 final size:21
Alignment explanation
Indices: 87535662--87535700 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
87535652 ACCAAACAAC
*
87535662 AAGTGACTCGT-AATCATCTT
1 AAGTCACTCGTAAATCATCTT
*
87535682 AAGTCACTCTTAAATCATC
1 AAGTCACTCGTAAATCATC
87535701 CATGACCATT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.33, C:0.23, G:0.10, T:0.33
Consensus pattern (21 bp):
AAGTCACTCGTAAATCATCTT
Found at i:87540705 original size:58 final size:58
Alignment explanation
Indices: 87540615--87540731 Score: 198
Period size: 58 Copynumber: 2.0 Consensus size: 58
87540605 GAATATCTCT
*
87540615 TAACATACTGTTCATATGATCGTTTCATTACTTTCCTATGAAAATAGATTAATCAAGG
1 TAACATACTGTCCATATGATCGTTTCATTACTTTCCTATGAAAATAGATTAATCAAGG
* * *
87540673 TAACATACTGTCCATATGATTGTTTCGTTACTTTCCTATGAAAATAGATTCATCAAGG
1 TAACATACTGTCCATATGATCGTTTCATTACTTTCCTATGAAAATAGATTAATCAAGG
87540731 T
1 T
87540732 TCGTTTAAAT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.38
Consensus pattern (58 bp):
TAACATACTGTCCATATGATCGTTTCATTACTTTCCTATGAAAATAGATTAATCAAGG
Found at i:87541594 original size:40 final size:39
Alignment explanation
Indices: 87541557--87541780 Score: 247
Period size: 39 Copynumber: 5.6 Consensus size: 39
87541547 GCTACTCGTT
* *
87541557 CAAATGCCTTCCGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTT-CGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * *
87541597 GAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCG-GACTTAGCCCGGAATTAGTAACTCGCA
* *
87541637 CCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGAATTAGTAACTCGCA
* *
87541676 CCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
87541715 CAAATGCCTTCGGATCTTAGTCCGGATATGA-TCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
87541756 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
87541781 CATCAGTCGA
Statistics
Matches: 163, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
39 77 0.47
40 70 0.43
41 16 0.10
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:87541740 original size:118 final size:120
Alignment explanation
Indices: 87541559--87541780 Score: 276
Period size: 118 Copynumber: 1.9 Consensus size: 120
87541549 TACTCGTTCA
* *
87541559 AATGCCTTCCGGACATAGCCCGGTTATAGTAACTCGCAGAAATGCCTTCGAGACTTAACCCGGAT
1 AATGCCTTCCGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGGAT
* * *
87541624 -TTAGTAAC-TCGCACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACC
66 ATGA-TAACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
* * **
87541678 AATGCCTT-CGGGCTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTCG-GATCTTAGTCCGG
1 AATGCCTTCCGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGAGA-CTTAACCCGG
*
87541740 ATATGATCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATGATAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
87541781 CATCAGTCGA
Statistics
Matches: 88, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
117 3 0.03
118 60 0.68
119 25 0.28
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
AATGCCTTCCGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGGAT
ATGATAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
Found at i:87543784 original size:27 final size:26
Alignment explanation
Indices: 87543753--87543930 Score: 153
Period size: 27 Copynumber: 6.6 Consensus size: 26
87543743 TAAATTGTAC
87543753 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* *
87543780 TGCACTAAGTGTGCGAAATGGA-TATG-
1 AGCACTAAGTGTGCG--ATTGACTATGT
* *
87543806 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
* *
87543834 GGCACTAAGTGTGCGAGATGGACTATGT
1 AGCACTAAGTGTGC--GATTGACTATGT
* * *
87543862 GGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
87543889 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
87543916 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
87543931 GGCTCAATAA
Statistics
Matches: 126, Mismatches: 17, Indels: 16
0.79 0.11 0.10
Matches are distributed among these distances:
26 7 0.06
27 92 0.73
28 24 0.19
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:87543814 original size:54 final size:54
Alignment explanation
Indices: 87543754--87543904 Score: 189
Period size: 54 Copynumber: 2.8 Consensus size: 54
87543744 AAATTGTACA
*
87543754 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGGA-TATGAT-
1 GCACTAAGTGTGCGATT-GACTATGTAGCACTAAGTGTGCGAAATGGACTATG-TG
* ** *
87543808 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATGTG
1 GCACTAAGTGTGCG-ATTGACTATGTAGCACTAAGTGTGCGAAATGGACTATGTG
* *
87543863 GCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA-TTGACTATGTAGCACTAAGTGTGCGA
87543905 GTTGATTATA
Statistics
Matches: 84, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
54 42 0.50
55 42 0.50
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (54 bp):
GCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGGACTATGTG
Found at i:87543894 original size:82 final size:81
Alignment explanation
Indices: 87543754--87543909 Score: 208
Period size: 82 Copynumber: 1.9 Consensus size: 81
87543744 AAATTGTACA
* * *
87543754 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGGATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAATCGACTATGTGGCACTAAGTGTGCGAAATGGATACGATGCACTAAGTGT
87543819 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* * *
87543835 GCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCG-ATTTGATTACG-TAGCACTAAG
1 GCACTAAGTGTGCGA-ATCGACTATGTGGCACTAAGTGTGCGAAATGGA-TACGAT-GCACTAAG
*
87543898 TGTGCGAGTTGA
63 TGTGCGAATTGA
87543910 TTATATAGCA
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAATCGACTATGTGGCACTAAGTGTGCGAAATGGATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:87543921 original size:82 final size:81
Alignment explanation
Indices: 87543750--87543930 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
87543740 GATTAAATTG
* * *
87543750 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGGATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAATCGACTATGTGGCACTAAGTGTGCGAAATGGATACGATGCACTAA
87543815 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * * *
87543831 TGCGGCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCG-ATTTGATTACG-TAGCAC
1 TACAGCACTAAGTGTGCGA-ATCGACTATGTGGCACTAAGTGTGCGAAATGGA-TACGAT-GCAC
* **
87543894 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
87543913 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
87543931 GGCTCAATAA
Statistics
Matches: 82, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
81 22 0.27
82 60 0.73
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAATCGACTATGTGGCACTAAGTGTGCGAAATGGATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:87545008 original size:40 final size:40
Alignment explanation
Indices: 87544953--87545033 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
87544943 CGGAAACAGT
*
87544953 ATTGAAGCCCCGTGTAGGGAGATATCCAAGTCGTAATGGG
1 ATTGAAGCCCCGTGTAGGGAGATATCCAAGTCGTAAAGGG
*
87544993 ATTGAAGCCCCGTGTAGGGAGATATCCCAGTCGTAAAGGG
1 ATTGAAGCCCCGTGTAGGGAGATATCCAAGTCGTAAAGGG
87545033 A
1 A
87545034 AAAGGTCAGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.28, C:0.19, G:0.32, T:0.21
Consensus pattern (40 bp):
ATTGAAGCCCCGTGTAGGGAGATATCCAAGTCGTAAAGGG
Found at i:87551302 original size:121 final size:121
Alignment explanation
Indices: 87551088--87551330 Score: 450
Period size: 121 Copynumber: 2.0 Consensus size: 121
87551078 TAAACATCCG
87551088 CAGGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTG
1 CAGGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTG
* *
87551153 AGTTGGCTGTTCGACGCCCGGGGAAGGCCCCCGAAGGAACCGTTCCCAATCCGTCC
66 AGTCGACTGTTCGACGCCCGGGGAAGGCCCCCGAAGGAACCGTTCCCAATCCGTCC
87551209 CAGGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTG
1 CAGGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTG
* *
87551274 AGTCGACTGTTCGTCGCCCGGGGAAGGCCCCCGAAGGACCCGTTCCCAATCCGTCC
66 AGTCGACTGTTCGACGCCCGGGGAAGGCCCCCGAAGGAACCGTTCCCAATCCGTCC
87551330 C
1 C
87551331 CCGGCCGGCA
Statistics
Matches: 118, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
121 118 1.00
ACGTcount: A:0.19, C:0.32, G:0.24, T:0.25
Consensus pattern (121 bp):
CAGGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTG
AGTCGACTGTTCGACGCCCGGGGAAGGCCCCCGAAGGAACCGTTCCCAATCCGTCC
Found at i:87553773 original size:326 final size:326
Alignment explanation
Indices: 87553180--87553811 Score: 1194
Period size: 326 Copynumber: 1.9 Consensus size: 326
87553170 TTCCACATCC
87553180 GACCGGGGCGCATCGCCGGCCCCCATCCGCTTCCCTCCCGACAATTTCAAGCACTCTTTGACTCT
1 GACCGGGGCGCATCGCCGGCCCCCATCCGCTTCCCTCCCGACAATTTCAAGCACTCTTTGACTCT
87553245 CTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTCGCCCGTATT
66 CTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTCGCCCGTATT
* *
87553310 TAGCCTTGGACGGAATTCACCGCCCGATTTGGGCTGCATTCCCAAACAACCCGACTCGTAGACAG
131 TAGCCTTGGACGGAATTCACCGCCCGATTAGGGCTGCATTCCAAAACAACCCGACTCGTAGACAG
* * *
87553375 CGCCTCTTGGTGCGACAGGGTCCGGGCACGACGGGGCTCTCACCCTCTCCGGCGCCCCTTTCCAG
196 CGCCTCGTGGTGCGACAGGGTCCGGGCACAACGGGGCTCTCACCCTCTCCGGCGCCCCCTTCCAG
87553440 GGGACTTGGGCCCGGTCCGTCGCTGAGGACGCTTCTCCAGACTACATTAACCCCCGATGTCATAA
261 GGGACTTGGGCCCGGTCCGTCGCTGAGGACGCTTCTCCAGACTACATTAACCCCCGATGTCATAA
87553505 A
326 A
87553506 GACCGGGGCGCATCGCCGGCCCCCATCCGCTTCCCTCCCGACAATTTCAAGCACTCTTTGACTCT
1 GACCGGGGCGCATCGCCGGCCCCCATCCGCTTCCCTCCCGACAATTTCAAGCACTCTTTGACTCT
87553571 CTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTCGCCCGTATT
66 CTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTCGCCCGTATT
87553636 TAGCCTTGGACGGAATTTC-CCGCCCGATTAGGGCTGCATTCCAAAACAACCCGACTCGTAGACA
131 TAGCCTTGGACGGAA-TTCACCGCCCGATTAGGGCTGCATTCCAAAACAACCCGACTCGTAGACA
*
87553700 GCGCCTCGTGGTGCGACAGGGTCCGGGCACAACGGGGCTCTCACCCTCTCTGGCGCCCCCTTCCA
195 GCGCCTCGTGGTGCGACAGGGTCCGGGCACAACGGGGCTCTCACCCTCTCCGGCGCCCCCTTCCA
87553765 GGGGACTTGGGCCCGGTCCGTCGCTGAGGACGCTTCTCCAGACTACA
260 GGGGACTTGGGCCCGGTCCGTCGCTGAGGACGCTTCTCCAGACTACA
87553812 ATTCGGACGC
Statistics
Matches: 299, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
326 296 0.99
327 3 0.01
ACGTcount: A:0.16, C:0.36, G:0.23, T:0.24
Consensus pattern (326 bp):
GACCGGGGCGCATCGCCGGCCCCCATCCGCTTCCCTCCCGACAATTTCAAGCACTCTTTGACTCT
CTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTCGCCCGTATT
TAGCCTTGGACGGAATTCACCGCCCGATTAGGGCTGCATTCCAAAACAACCCGACTCGTAGACAG
CGCCTCGTGGTGCGACAGGGTCCGGGCACAACGGGGCTCTCACCCTCTCCGGCGCCCCCTTCCAG
GGGACTTGGGCCCGGTCCGTCGCTGAGGACGCTTCTCCAGACTACATTAACCCCCGATGTCATAA
A
Found at i:87553992 original size:154 final size:153
Alignment explanation
Indices: 87553712--87554020 Score: 514
Period size: 154 Copynumber: 2.0 Consensus size: 153
87553702 GCCTCGTGGT
*
87553712 GCGACAGGGTCCGGGCACAACGGGGCTCTCACCCTCTCTGGCGCCCCCTTCCAGGGGACTTGGGC
1 GCGACAGGGTCCGGGCACAACGGGGCTCTCACCCTCTCCGGCGCCCCCTTCCAGGGGACTTGGGC
*
87553777 CCGGTCCGTCGCTGAGGACGCTTCTCCAGACTACAATTCGGACGCCGATGGCGACCGATTCTCAA
66 CCGGTCCGTCGCTGAGGACGCTTCTCCAGACTACAATTCGGACGCCGATGCCGACCGATTCT-AA
*
87553842 -GCTGGGCTTTTCCCGGTTCGCTC
130 GGCTGGGCTGTTCCCGGTTCGCTC
* *
87553865 NGCGACAGGGTCCGGGCACGACGGGGCTCTCACCCTCTCCGGCGCCCCTTTCCAGGGGACTTGGG
1 -GCGACAGGGTCCGGGCACAACGGGGCTCTCACCCTCTCCGGCGCCCCCTTCCAGGGGACTTGGG
* *
87553930 CCCGGTCCGTCGCTGAGGACGCTTCTCCAGACTACAATTCGGACGACGGA-GCCGCCCGATTCTA
65 CCCGGTCCGTCGCTGAGGACGCTTCTCCAGACTACAATTCGGACG-CCGATGCCGACCGATTCTA
87553994 AGGCTGGGCTGTTCCCGGTTCGCTC
129 AGGCTGGGCTGTTCCCGGTTCGCTC
87554019 GC
1 GC
87554021 CGTTACTAGG
Statistics
Matches: 146, Mismatches: 7, Indels: 5
0.92 0.04 0.03
Matches are distributed among these distances:
153 4 0.03
154 139 0.95
155 3 0.02
ACGTcount: A:0.13, C:0.36, G:0.31, T:0.19
Consensus pattern (153 bp):
GCGACAGGGTCCGGGCACAACGGGGCTCTCACCCTCTCCGGCGCCCCCTTCCAGGGGACTTGGGC
CCGGTCCGTCGCTGAGGACGCTTCTCCAGACTACAATTCGGACGCCGATGCCGACCGATTCTAAG
GCTGGGCTGTTCCCGGTTCGCTC
Found at i:87556035 original size:107 final size:108
Alignment explanation
Indices: 87555830--87556044 Score: 335
Period size: 107 Copynumber: 2.0 Consensus size: 108
87555820 GCCAATTAAG
* * * *
87555830 GCCAGGAGCGCATCGCCGGCAGTAGGGACGAGCAGACCGGTGCTCACCGTGAGGCGGACCGGCCG
1 GCCAGGAGCGCATCGCCGGCAGAAGGGACAAGCAGACCGGTGCACACCGTAAGGCGGACCGGCCG
* *
87555895 ACCCACCCCTAAGTCCAACTACGAGCTTTTTAACTGCAACAAC
66 ACCCACCCCAAAGTCCAACTACGAGATTTTTAACTGCAACAAC
87555938 GCCAGGAGCGCATCGCCGGCAGAAGGGACAAG-ACGACCGGTGCACACC-TAAGGCGGACCGGCC
1 GCCAGGAGCGCATCGCCGGCAGAAGGGACAAGCA-GACCGGTGCACACCGTAAGGCGGACCGGCC
* *
87556001 GGCCCATCCCAAAGTCCAACTACGAGATTTTTAACTGCAACAAC
65 GACCCACCCCAAAGTCCAACTACGAGATTTTTAACTGCAACAAC
87556045 TTAAATATAC
Statistics
Matches: 98, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
107 55 0.56
108 43 0.44
ACGTcount: A:0.27, C:0.33, G:0.28, T:0.12
Consensus pattern (108 bp):
GCCAGGAGCGCATCGCCGGCAGAAGGGACAAGCAGACCGGTGCACACCGTAAGGCGGACCGGCCG
ACCCACCCCAAAGTCCAACTACGAGATTTTTAACTGCAACAAC
Found at i:87557748 original size:43 final size:44
Alignment explanation
Indices: 87557638--87558522 Score: 886
Period size: 43 Copynumber: 20.6 Consensus size: 44
87557628 CATTCAACAT
* * *
87557638 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ATCCAA-GCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGCG
* * * ** * *
87557681 CCAAGG-TGCCAATGCTGCTTGAGGCTCCCGCAC-ATCCGAGGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGCG
*
87557724 CCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG-G
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCG
* **
87557766 CCTAGGTTACCGATGGTGCCCGAGGCTCTGGCACGACCAAGG-G
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCG
* *
87557809 CCTAGGTTACCGATGGT-CTCCGAGGCTCCCGCAC-ATCCAA-GCA
1 CCTAGGTTGCCGATGGTGC-CCGAGGCTCCCGCACGA-CCAAGGCG
*** *
87557852 TAAAGG-TGCCGATGGTGCCTGAGGCTCCCGCACGACCAAGG-G
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCG
* *
87557894 CCTAGGTTACCGATGGTGTCCC-AGGCTCCCGCAC-ATCCAA-GCA
1 CCTAGGTTGCCGATGGTG-CCCGAGGCTCCCGCACGA-CCAAGGCG
* * * ** * * *
87557937 CCAAGG-TGCCAATGCTGCTTGAGGCTCCCGCGC-ATCCGAGGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGCG
*
87557980 CCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG-G
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCG
87558022 CCTAGGTCGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG-G
1 CCTAGGT--TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCG
87558067 CCTAGGTCGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG-G
1 CCTAGGT--TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCG
* *
87558112 CCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACC-AGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCG
* *
87558154 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACC-AGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCG
* *
87558197 CCTAGGTTGACGATGGT-CCCGAGGCTCCCGCACGACC-AGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCG
* * * ** * *
87558239 CCTAGGTTACCGATGGTGTCC-AAGCTCCCATACGA-CTAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCG
* * *
87558281 CCTAGGTT-CCGATGGTGTCTGAGGCTCCCGCACGACC-AGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCG
* *
87558323 CCTAGGTTACCGATGGTGCCCGAGGCTCTCGCACGACCAAGG-G
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCG
*
87558366 CCTAGGTTGCCGATGGTGCCCGAGGCTCCTGCACGACCAAGG-G
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCG
**
87558409 CCTAGGTTTTCGATGGTGCCCGAGGCTCCCGCACGACCAAGG-G
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCG
* * * *
87558452 CCTAGGTTGCCGATGGTGTCCGAGGCTCCTGCA-TATCCAAGGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGCG
* * *
87558496 CCAAGG-TGCCGATGCTGCTCGAGGCTC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTC
87558523 TTGCACCACT
Statistics
Matches: 731, Mismatches: 82, Indels: 58
0.84 0.09 0.07
Matches are distributed among these distances:
41 16 0.02
42 222 0.30
43 394 0.54
44 12 0.02
45 87 0.12
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.16
Consensus pattern (44 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCG
Found at i:87558218 original size:85 final size:86
Alignment explanation
Indices: 87557638--87558480 Score: 966
Period size: 85 Copynumber: 9.8 Consensus size: 86
87557628 CATTCAACAT
* * * ** * * * **
87557638 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCTT
1 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* *
87557701 GAGGCTCCCGCAC-ATCCGAGGCA
65 GAGGCTCCCGCACGA-CCAAGG-G
* * *
87557724 CCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCG
1 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
**
87557788 AGGCTCTGGCACGACCAAGGG
66 AGGCTCCCGCACGACCAAGGG
*
87557809 CCTAGGTTACCGATGGT-CTCCGAGGCTCCCGCAC-ATCCAA--GCATAAAGG-TGCCGATGGTG
1 CCTAGGTTACCGATGGTGC-CCGAGGCTCCCGCACGA-CCAAGGGCCT--AGGTTGCCGATGGTG
*
87557869 CCTGAGGCTCCCGCACGACCAAGGG
62 CCCGAGGCTCCCGCACGACCAAGGG
** * * * *
87557894 CCTAGGTTACCGATGGTGTCCC-AGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCT
1 CCTAGGTTACCGATGGTG-CCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
87557956 TGAGGCTCCCGCGC-ATCCGAGGCA
64 CGAGGCTCCCGCACGA-CCAAGG-G
* *
87557980 CCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTCGTGCCGATGGTGCC
1 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT--TGCCGATGGTGCC
87558044 CGAGGCTCCCGCACGACCAAGGG
64 CGAGGCTCCCGCACGACCAAGGG
*
87558067 CCTAGGTCGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
1 CCTAGGT--TACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
87558131 CGAGGCTCTCGCACGACCAGGGG
64 CGAGGCTCCCGCACGACCAAGGG
* *
87558154 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGACGATGGT-CCCG
1 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
*
87558218 AGGCTCCCGCACGACCAGGGG
66 AGGCTCCCGCACGACCAAGGG
* * ** * * * *
87558239 CCTAGGTTACCGATGGTGTCC-AAGCTCCCATACGACTAGGGGCCTAGGTT-CCGATGGTGTCTG
1 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
*
87558302 AGGCTCCCGCACGACCAGGGG
66 AGGCTCCCGCACGACCAAGGG
*
87558323 CCTAGGTTACCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
1 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
*
87558388 AGGCTCCTGCACGACCAAGGG
66 AGGCTCCCGCACGACCAAGGG
** *
87558409 CCTAGGTTTTCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCG
1 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
87558474 AGGCTCC
66 AGGCTCC
87558481 TGCATATCCA
Statistics
Matches: 657, Mismatches: 73, Indels: 54
0.84 0.09 0.07
Matches are distributed among these distances:
83 7 0.01
84 75 0.11
85 279 0.42
86 177 0.27
87 49 0.07
88 27 0.04
89 1 0.00
90 42 0.06
ACGTcount: A:0.18, C:0.34, G:0.33, T:0.16
Consensus pattern (86 bp):
CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
AGGCTCCCGCACGACCAAGGG
Found at i:87559122 original size:43 final size:43
Alignment explanation
Indices: 87559057--87559142 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
87559047 ACCTACAACA
87559057 CGTGCCCTTGGGGGCCAAAGGCCCCTACTGCGAGTCGGCAATC
1 CGTGCCCTTGGGGGCCAAAGGCCCCTACTGCGAGTCGGCAATC
* *
87559100 CGTGCCCTTGGGGGCCAGAGGCCCCTACTGCGGGTCGGCAATC
1 CGTGCCCTTGGGGGCCAAAGGCCCCTACTGCGAGTCGGCAATC
87559143 GGGCGACGGG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.14, C:0.35, G:0.35, T:0.16
Consensus pattern (43 bp):
CGTGCCCTTGGGGGCCAAAGGCCCCTACTGCGAGTCGGCAATC
Found at i:87564484 original size:58 final size:58
Alignment explanation
Indices: 87564390--87564504 Score: 203
Period size: 58 Copynumber: 2.0 Consensus size: 58
87564380 CGTTTCTCAG
*
87564390 GCTCCCTCTCCGGAATCGAACCCTAATTCTCTGTCACCCGTCACCACCATAGTAGGCA
1 GCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATAGTAGGCA
* *
87564448 GCTCCCTCTCCGGAATTGAACCCTAATTCTCCGTCACCTGTCACCACCATAGTAGGC
1 GCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATAGTAGGC
87564505 CACTATCCTA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 54 1.00
ACGTcount: A:0.22, C:0.39, G:0.16, T:0.23
Consensus pattern (58 bp):
GCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATAGTAGGCA
Found at i:87564880 original size:14 final size:14
Alignment explanation
Indices: 87564861--87564892 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
87564851 AGGTCATTTA
87564861 GCCCAACCAAACTG
1 GCCCAACCAAACTG
87564875 GCCCAACCAAACTG
1 GCCCAACCAAACTG
87564889 GCCC
1 GCCC
87564893 GGTGATTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.47, G:0.16, T:0.06
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:87571279 original size:43 final size:42
Alignment explanation
Indices: 87571196--87571373 Score: 180
Period size: 43 Copynumber: 4.2 Consensus size: 42
87571186 TTTTCTTTAG
* * ** *
87571196 CCCGCACATCCGAGGCACCAGGGTGCCCCTGCTGCTCGAGGCA
1 CCCGCACATCC-AAGCACCAAGGTGCCAATGCTGCTCGAGGCT
* * * *
87571239 CCCGCACATTCAA-CATCCTAGGTTGCCTATGGTG-TCCGAGGCT
1 CCCGCACATCCAAGCA-CCAAGG-TGCCAATGCTGCT-CGAGGCT
87571282 CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
* * * *
87571324 CCCGCACATCCGAGGCACCAAGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACATCC-AAGCACCAAGGTGCCAATGCTGCTCGAGGCT
87571367 CCCGCAC
1 CCCGCAC
87571374 GACCAAGGGC
Statistics
Matches: 113, Mismatches: 16, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
41 2 0.02
42 33 0.29
43 76 0.67
44 2 0.02
ACGTcount: A:0.19, C:0.39, G:0.27, T:0.15
Consensus pattern (42 bp):
CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
Found at i:87571314 original size:85 final size:86
Alignment explanation
Indices: 87571196--87571373 Score: 227
Period size: 85 Copynumber: 2.1 Consensus size: 86
87571186 TTTTCTTTAG
* * ** * *
87571196 CCCGCACATCCGAGGCACCAGGGTGCCCCTGCTGCTCGAGGCACCCGCACATTC-A-ACATCCTA
1 CCCGCACATCCGAAGCACCAAGGTGCCAATGCTGCTCGAGGCACCCGCACATCCGAGACA-CCAA
* *
87571259 GGTTGCCTATGGTGTCCGAGGCT
65 GG-TGCCGATGGTGCCCGAGGCT
* *
87571282 CCCGCACATCC-AAGCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCACATCCGAGGCACCAAG
1 CCCGCACATCCGAAGCACCAAGGTGCCAATGCTGCTCGAGGCACCCGCACATCCGAGACACCAAG
87571346 GTGCCGATGGTGCCCGAGGCT
66 GTGCCGATGGTGCCCGAGGCT
87571367 CCCGCAC
1 CCCGCAC
87571374 GACCAAGGGC
Statistics
Matches: 80, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
85 61 0.76
86 17 0.21
87 2 0.03
ACGTcount: A:0.19, C:0.39, G:0.27, T:0.15
Consensus pattern (86 bp):
CCCGCACATCCGAAGCACCAAGGTGCCAATGCTGCTCGAGGCACCCGCACATCCGAGACACCAAG
GTGCCGATGGTGCCCGAGGCT
Found at i:87571730 original size:297 final size:298
Alignment explanation
Indices: 87571255--87572901 Score: 2036
Period size: 297 Copynumber: 5.5 Consensus size: 298
87571245 CATTCAACAT
* * * ** * * * * *
87571255 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCAATGCTGCTCG
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTACCGATGGTGCCCG
**
87571319 AGGCTCCCGCAC-ATCCGAGGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
64 AGGCTCCCGCACGA-CC-AGGGGCCAAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
*
87571382 GCCTAGG-TGCCGATGGT-CCCGAGGCTCTCGAACGACCAAGGGCCTAGGTGCCGATTGTGCCCG
127 GCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGAACGACCAAGGGCCTAGGTGCCGATGGTGCCCG
*
87571445 AGGCTCTCGCACGACCAGGGGCCTAGGGTGCCGATGGTGCCCGAGGCACCCGCACGACCAGGGGC
192 AGGCTCTCGCACGACCAGGGGCCTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGC
87571510 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
257 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
87571552 CCTAGGTTACCGATGGTGCCCGAGGCTC-CGGCACGACCAAGGGCCTAGGTTATCGATGGTGTCC
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCTC-GCACGACCAAGGGCCTAGG-TACCGATGGTGCCC
* * **
87571616 GAGGCTCCGGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
63 GAGGCTCCCGCACGA-CCAGGGGCCAAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
*
87571679 GCCTAGG-TGCCGATGGT-CCCGAGGCTCTCGAACGACCAAGGGCCTAGGTGCCGATTGTGCCCG
127 GCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGAACGACCAAGGGCCTAGGTGCCGATGGTGCCCG
*
87571742 AGGCTCTCGCACGACCAGGGGCCTAGGGTGCCGATGGTGCCCGAGGCACCCGCACGACCAGGGGC
192 AGGCTCTCGCACGACCAGGGGCCTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGC
87571807 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
257 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
87571849 CCTAGGTGCCGATGGT-CCCGAGGCTCTCGAACGACCAAGGGCCTAGGTGCCGATTGTGCCCGAG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTACCGATGGTGCCCGAG
* * * * *
87571913 GCTCTCGCACGACCAGGGGCCTAGGGTGCCGATGGTGCCCGAGGCACCCGCACGACCAGGGGCCT
66 GCTCCCGCACGACCAGGGGCCAAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
* *
87571978 AGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAGGGGCCTAGGGTGCCGATGGTGCCCGAGG
131 AGGTTGCCGATGGTGCCCGAGGCTCTCGAACGACCAAGGGCCTA-GGTGCCGATGGTGCCCGAGG
* * * * *
87572043 CACCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACTAGGGCCCTA
195 CTCTCGCACGACCAGGGGCCTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTA
* * *
87572108 GGTTACCGATGGT-CCCGAGGCTCCCGTACGACCAGGGG
260 GGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** * * * * ** * *
87572146 CCTAGGTTGTCGATGGTGTACGA-GCTCCCGTATGACCAGGGGCCTAGGTTTCGATGGTGTCTGA
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTACCGATGGTGCCCGA
* * * * *
87572210 GGCTCCCGCACGACCAGGGGCCTAGGTTGCTGATGGTGCCCCAGGCTCTCGCAGGACCAAGGGCC
65 GGCTCCCGCACGACCAGGGGCCAAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCC
* * *
87572275 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTTCCGATGGTGCCCGAG
130 TAGGTTGCCGATGGTGCCCGAGGCTCTCGAACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAG
** * * * * **
87572340 GCTC-CTGCACGACCAATGGCCTAGGTTACCGATAGTGTCCC-AGGCTCCCGCAC-ATCCAAGAA
194 GCTCTC-GCACGACCAGGGGCCTAGGGTGCCGATGGTG-CCCGAGGCTCCCGCACGA-CCAGGGG
*
87572402 CCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
256 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
87572444 TCTAGGTGCCGATGGT-CCCGAGGCTCTCACACGACCAAGGGCCTAGCTGCCGATGGTGCCCGAG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTACCGATGGTGCCCGAG
* * * ** * * *
87572508 GCTCTCGCAAGACCAGGGGCCTAGGAAGCCGATGGTGCCCGAGGCTCTCGCAAGACCAGGGGCCT
66 GCTCCCGCACGACCAGGGGCCAAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
** * *
87572573 AGGAAGCCGATGGTGCCCGAGGCTCTCGCAA-GACCAGGGGCCTAGGAAGCCGATGGTGCCCGAG
131 AGGTTGCCGATGGTGCCCGAGGCTCTCG-AACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAG
* ** * *
87572637 GCTCTCGCAAGACCAGGGGCCTAGGAAGCCGATGGTGCCCGAGGCTCTCGCAAGACCAGGGGCCT
194 GCTCTCGCACGACCAGGGGCCTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCT
** * * *
87572702 AGGAAGCCGATGGTGCCCGAGGCTCTCGCAAGACCAGGGG
259 AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
87572742 CCTAGGAAGCCGATGGTGCCCGAGGCTCTCGCAAGACCAGGGGCCTAGGAAGCCGATGATGGTGC
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTA-CC---GATGGTGC
* * * *
87572807 CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTTCCGATGGTGCCCAAGGCTCCCGCACGACCAAG
61 CCGAGGCTCCCGCACGACCAGGGGCCAAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
*
87572872 GGCCTAGGTTGCCGATGGTGTCCGAGGCTC
126 GGCCTAGGTTGCCGATGGTGCCCGAGGCTC
87572902 CTGCATATCC
Statistics
Matches: 1178, Mismatches: 144, Indels: 49
0.86 0.11 0.04
Matches are distributed among these distances:
294 30 0.03
295 69 0.06
296 27 0.02
297 528 0.45
298 390 0.33
299 15 0.01
300 27 0.02
301 2 0.00
304 90 0.08
ACGTcount: A:0.18, C:0.33, G:0.35, T:0.15
Consensus pattern (298 bp):
CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTACCGATGGTGCCCGAG
GCTCCCGCACGACCAGGGGCCAAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
AGGTTGCCGATGGTGCCCGAGGCTCTCGAACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGC
TCTCGCACGACCAGGGGCCTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAG
GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:87572915 original size:43 final size:43
Alignment explanation
Indices: 87571255--87572902 Score: 1978
Period size: 43 Copynumber: 38.7 Consensus size: 43
87571245 CATTCAACAT
* * **
87571255 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * * * *
87571298 CCAAGG-TGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCGAGGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-G
*
87571341 CCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
87571383 CCTAGG-TGCCGATGGT-CCCGAGGCTCTCGAACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
87571424 CCTAGG-TGCCGATTGTGCCCGAGGCTCTCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
87571466 CCTAGGGTGCCGATGGTGCCCGAGGCACCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
87571509 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
87571552 CCTAGGTTACCGATGGTGCCCGAGGCTCCGGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * * **
87571595 CCTAGGTTATCGATGGTGTCCGAGGCTCCGGCAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
*
87571638 CCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
87571680 CCTAGG-TGCCGATGGT-CCCGAGGCTCTCGAACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
87571721 CCTAGG-TGCCGATTGTGCCCGAGGCTCTCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
87571763 CCTAGGGTGCCGATGGTGCCCGAGGCACCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
87571806 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
87571849 CCTAGG-TGCCGATGGT-CCCGAGGCTCTCGAACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
87571890 CCTAGG-TGCCGATTGTGCCCGAGGCTCTCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
87571932 CCTAGGGTGCCGATGGTGCCCGAGGCACCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
87571975 CCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
87572018 CCTAGGGTGCCGATGGTGCCCGAGGCACCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
87572061 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CTAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
87572103 CCCTAGGTTACCGATGGT-CCCGAGGCTCCCGTACGACCAGGGG
1 -CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** * * *
87572146 CCTAGGTTGTCGATGGTGTACGA-GCTCCCGTATGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
87572188 CCTAGGTT-TCGATGGTGTCTGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
87572230 CCTAGGTTGCTGATGGTGCCCCAGGCTCTCGCAGGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
87572273 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
87572316 CCTAGGTTTCCGATGGTGCCCGAGGCTCCTGCACGACCAATGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * **
87572359 CCTAGGTTACCGATAGTGTCCC-AGGCTCCCGCAC-ATCCAAGAA
1 CCTAGGTTGCCGATGGTG-CCCGAGGCTCCCGCACGA-CCAAGGG
*
87572402 CCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
87572444 TCTAGG-TGCCGATGGT-CCCGAGGCTCTCACACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
87572485 CCTA-GCTGCCGATGGTGCCCGAGGCTCTCGCAAGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * * *
87572527 CCTAGGAAGCCGATGGTGCCCGAGGCTCTCGCAAGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * * *
87572570 CCTAGGAAGCCGATGGTGCCCGAGGCTCTCGCAAGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * * *
87572613 CCTAGGAAGCCGATGGTGCCCGAGGCTCTCGCAAGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * * *
87572656 CCTAGGAAGCCGATGGTGCCCGAGGCTCTCGCAAGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * * *
87572699 CCTAGGAAGCCGATGGTGCCCGAGGCTCTCGCAAGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * * *
87572742 CCTAGGAAGCCGATGGTGCCCGAGGCTCTCGCAAGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
**
87572785 CCTAGGAAGCCGATGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCC---GATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
87572831 CCTAGGTTTCCGATGGTGCCCAAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
87572874 CCTAGGTTGCCGATGGTGTCCGAGGCTCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCC
87572903 TGCATATCCA
Statistics
Matches: 1454, Mismatches: 126, Indels: 50
0.89 0.08 0.03
Matches are distributed among these distances:
40 1 0.00
41 165 0.11
42 339 0.23
43 908 0.62
44 4 0.00
46 37 0.03
ACGTcount: A:0.18, C:0.33, G:0.35, T:0.15
Consensus pattern (43 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:87573747 original size:58 final size:58
Alignment explanation
Indices: 87573657--87573767 Score: 177
Period size: 58 Copynumber: 1.9 Consensus size: 58
87573647 GGGAGGGACA
*
87573657 GGGACGATTCATTCATTGTTGGGTACCAAACATGCAACGGTATCTGAATTCTAGCTTT
1 GGGACGATTCATTCATTATTGGGTACCAAACATGCAACGGTATCTGAATTCTAGCTTT
* * * *
87573715 GGGACGGTTCATTCATTATTGGGTACCGAACATGTAACGGTATCTTAATTCTA
1 GGGACGATTCATTCATTATTGGGTACCAAACATGCAACGGTATCTGAATTCTA
87573768 CATTTTGGGA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
58 48 1.00
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (58 bp):
GGGACGATTCATTCATTATTGGGTACCAAACATGCAACGGTATCTGAATTCTAGCTTT
Found at i:87573865 original size:24 final size:24
Alignment explanation
Indices: 87573812--87573865 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
87573802 TTTGTATATC
* *
87573812 CCGGGATGGATCGCCAGATCATCG
1 CCGGGATGGATCGCCAGAGCACCG
* * *
87573836 CTGGGATGGATCGTCGGAGCACCG
1 CCGGGATGGATCGCCAGAGCACCG
87573860 CCGGGA
1 CCGGGA
87573866 ACCTAACCGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.19, C:0.28, G:0.39, T:0.15
Consensus pattern (24 bp):
CCGGGATGGATCGCCAGAGCACCG
Found at i:87574870 original size:22 final size:22
Alignment explanation
Indices: 87574819--87574884 Score: 80
Period size: 21 Copynumber: 3.0 Consensus size: 22
87574809 GGTATTTGAG
* *
87574819 AATTGGTTCGAAATAGTATGG-
1 AATTGGTACGAAATGGTATGGT
87574840 AATTGGTACGAAATGGTATGGT
1 AATTGGTACGAAATGGTATGGT
* *
87574862 ATTTGGTACGAATTGGTAATGGT
1 AATTGGTACGAAATGGT-ATGGT
87574885 TCAAAGAGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
21 19 0.49
22 15 0.38
23 5 0.13
ACGTcount: A:0.30, C:0.05, G:0.30, T:0.35
Consensus pattern (22 bp):
AATTGGTACGAAATGGTATGGT
Found at i:87578812 original size:17 final size:17
Alignment explanation
Indices: 87578787--87578840 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 17
87578777 TCTCTTTTCA
*
87578787 TTCTCTTTTTTTGAATT
1 TTCTTTTTTTTTGAATT
* *
87578804 TTCTTTTTTTTTCATTT
1 TTCTTTTTTTTTGAATT
* *
87578821 TTCTTTTCTTTTGTATT
1 TTCTTTTTTTTTGAATT
87578838 TTC
1 TTC
87578841 GCTCTTTTCT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.07, C:0.13, G:0.04, T:0.76
Consensus pattern (17 bp):
TTCTTTTTTTTTGAATT
Found at i:87581926 original size:62 final size:62
Alignment explanation
Indices: 87581829--87581953 Score: 232
Period size: 62 Copynumber: 2.0 Consensus size: 62
87581819 AGGGGTCGTG
* *
87581829 CCCCGCCTCCGATTCACGGAATAAGTAAAATAACGTTAAAGGTAGTGGTATTTCAGTTTCGC
1 CCCCGCCTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCAATTTCGC
87581891 CCCCGCCTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCAATTTCGC
1 CCCCGCCTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCAATTTCGC
87581953 C
1 C
87581954 TGAGAGCTCC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.27
Consensus pattern (62 bp):
CCCCGCCTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCAATTTCGC
Found at i:87582815 original size:63 final size:63
Alignment explanation
Indices: 87582741--87582860 Score: 179
Period size: 63 Copynumber: 1.9 Consensus size: 63
87582731 AAAAAGATAA
* *
87582741 CTCTTCCCGAGGCCCCCGCTGACGT-ATCCGGACTCCCTAACGTTGCCGTCAGCCGCCACGTCT
1 CTCTTCCCGAGGCCCCCGCCGACGTCA-CCGAACTCCCTAACGTTGCCGTCAGCCGCCACGTCT
* * *
87582804 CTCTTCTCGAGGCCTCCGCCGACGTCACCGAACTCCCTAATGTTGCCGTCAGCCGCC
1 CTCTTCCCGAGGCCCCCGCCGACGTCACCGAACTCCCTAACGTTGCCGTCAGCCGCC
87582861 GCATCCTGGT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
63 50 0.98
64 1 0.02
ACGTcount: A:0.13, C:0.44, G:0.22, T:0.21
Consensus pattern (63 bp):
CTCTTCCCGAGGCCCCCGCCGACGTCACCGAACTCCCTAACGTTGCCGTCAGCCGCCACGTCT
Found at i:87586132 original size:266 final size:266
Alignment explanation
Indices: 87585658--87586188 Score: 1035
Period size: 266 Copynumber: 2.0 Consensus size: 266
87585648 ATACTCCCCC
87585658 CAGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGTAACATCCGCCGAT
1 CAGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGTAACATCCGCCGAT
87585723 CCCTGGTCGGTATCATTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTT
66 CCCTGGTCGGTATCATTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTT
*
87585788 TCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGCAGTTGTTCGTCTTTCATAAATCC
131 TCATTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGCAGTTGTTCGTCTTTCATAAATCC
87585853 AAGAATTTCACCTCTGACTATGAAATACGAATGCCCCCGACTGTCACTGTTAATCATTACTCCGA
196 AAGAATTTCACCTCTGACTATGAAATACGAATGCCCCCGACTGTCACTGTTAATCATTACTCCGA
87585918 TCCCGT
261 TCCCGT
87585924 CAGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGTAACATCCGCCGAT
1 CAGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGTAACATCCGCCGAT
87585989 CCCTGGTCGGTATCATTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTT
66 CCCTGGTCGGTATCATTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTT
*
87586054 TCATTCTTGATTAATGAAAAGATCCTTGGCAAATGCTTTCGCAGTTGTTCGTCTTTCATAAATCC
131 TCATTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGCAGTTGTTCGTCTTTCATAAATCC
*
87586119 AAGAATTTCACCTCTGACTATGAAATACGAATGCCCCCGACTGTCCCTGTTAATCATTACTCCGA
196 AAGAATTTCACCTCTGACTATGAAATACGAATGCCCCCGACTGTCACTGTTAATCATTACTCCGA
87586184 TCCCG
261 TCCCG
87586189 AAGGCCAACA
Statistics
Matches: 262, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
266 262 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (266 bp):
CAGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGTAACATCCGCCGAT
CCCTGGTCGGTATCATTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTT
TCATTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGCAGTTGTTCGTCTTTCATAAATCC
AAGAATTTCACCTCTGACTATGAAATACGAATGCCCCCGACTGTCACTGTTAATCATTACTCCGA
TCCCGT
Found at i:87588280 original size:85 final size:84
Alignment explanation
Indices: 87588170--87589065 Score: 743
Period size: 85 Copynumber: 10.5 Consensus size: 84
87588160 TTTTCTTTAG
* * ** * * * * * * *
87588170 CCCGCACATCCGAGGCACCAGGGTGCCCCTGCTGCTCGAGGCACCTGCACATCCTACGTCCTAGG
1 CCCGCACATCC-AAGCACCAAGGTGCCAATGGTGCCCGAGGCTCCCGCACA-CCAAGGGCCTAGG
* *
87588235 TTGCCTATGGTGTCCGAGGCT
64 TTACCGATGGTGTCCGAGGCT
* * * ** *
87588256 CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCACATCCGACGCACCAAGG
1 CCCGCACATCCAAGCACCAAGGTGCCAATGGTGCCCGAGGCTCCCGCACA-CC-AAGGGCCTAGG
*
87588321 -TGCCGATGGTG-CCTGAGGCT
64 TTACCGATGGTGTCC-GAGGCT
** * * * * *
87588341 CCCGCACGA-CCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCGGCACGGCCAAGGGCCTAG
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCAATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCTAG
* *
87588405 GTTTCCGATGGTGTTCGAGGCT
63 GTTACCGATGGTGTCCGAGGCT
* *
87588427 CCCGCACATCCAAGCACCAAGGTGCCAATGGTGCCTGTGGCTCCCGCACGACCAAGGGCCTAGGT
1 CCCGCACATCCAAGCACCAAGGTGCCAATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCTAGGT
*
87588492 TACCGATGGTGTCCCAGGCT
65 TACCGATGGTGTCCGAGGCT
* *
87588512 CCCGCACATCCATGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
1 CCCGCACATCCAAGCACCAAGGTGCCAATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCTAGGT
*
87588577 TACCGATGGTGTCCCAGGCT
65 TACCGATGGTGTCCGAGGCT
* *
87588597 CCCGCACATCCATGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-
1 CCCGCACATCCAAGCACCAAGGTGCCAATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCTAGGT
* *
87588661 TGCCGATGGT-CCCGAGGCT
65 TACCGATGGTGTCCGAGGCT
* * ** * * * *
87588680 CTCGCACGA-CCAGGGGCCTAGGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGTCTAG
1 CCCGCAC-ATCCAAGCACC-AAGGTGCCAATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCTAG
* *
87588744 GTTGCCGATGGTGCCCGAGGCT
63 GTTACCGATGGTGTCCGAGGCT
* ** * * * * *
87588766 CCCGCACGA-CCAGGGGCCTACGTTG-CAGATGGTGCACGAGGCTCCTGCACGACCAGGGGCCTA
1 CCCGCAC-ATCCAAGCACC-AAGGTGCCA-ATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCTA
*
87588829 GGTTGCCGATGGTGTCCGA-GCT
62 GGTTACCGATGGTGTCCGAGGCT
* * ** * * * * * * *
87588851 CCCGTACGA-CCAGGGGCCTAGGTTCCGATGGTGTCTGAGGCTCCCGCACCACCAGGGGCCTTGG
1 CCCGCAC-ATCCAAGCACCAAGGTGCCAATGGTGCCCGAGGCTCCCGCA-CACCAAGGGCCTAGG
* *
87588915 TTGCCGATGGTGCCCGAGGCT
64 TTACCGATGGTGTCCGAGGCT
** ** * *
87588936 GTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCAATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCTAG
* *
87589000 GTTGCCAATGGTGTCCGAGGCT
63 GTTACCGATGGTGTCCGAGGCT
* * * * *
87589022 CCTGCATATCCAAGGCACCAAGGTGCCGATGCTGCTCGAGGCTC
1 CCCGCACATCCAA-GCACCAAGGTGCCAATGGTGCCCGAGGCTC
87589066 TTGCACCACT
Statistics
Matches: 695, Mismatches: 95, Indels: 40
0.84 0.11 0.05
Matches are distributed among these distances:
83 19 0.03
84 103 0.15
85 332 0.48
86 234 0.34
87 7 0.01
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.17
Consensus pattern (84 bp):
CCCGCACATCCAAGCACCAAGGTGCCAATGGTGCCCGAGGCTCCCGCACACCAAGGGCCTAGGTT
ACCGATGGTGTCCGAGGCT
Found at i:87588339 original size:43 final size:42
Alignment explanation
Indices: 87588236--87589065 Score: 421
Period size: 43 Copynumber: 19.5 Consensus size: 42
87588226 CGTCCTAGGT
*
87588236 TGCCTATGGTGTCC-GAGGCTCCCGCACATCCAAGCACCAAGG
1 TGCCGATGGTG-CCTGAGGCTCCCGCACATCCAAGCACCAAGG
* * *
87588278 TGCCAATGCTG-CTCGAGGCTCCCGCACATCCGACGCACCAAGG
1 TGCCGATGGTGCCT-GAGGCTCCCGCACATCC-AAGCACCAAGG
** *
87588321 TGCCGATGGTGCCTGAGGCTCCCGCACGA-CCAAGGGCCTAGG
1 TGCCGATGGTGCCTGAGGCTCCCGCAC-ATCCAAGCACCAAGG
* * * ** ** *
87588363 TTACCGATGGTGCCCGAGGCTCCGGCACGGCCAAGGGCCTAGG
1 -TGCCGATGGTGCCTGAGGCTCCCGCACATCCAAGCACCAAGG
* *
87588406 TTTCCGATGGTG-TTCGAGGCTCCCGCACATCCAAGCACCAAGG
1 -TGCCGATGGTGCCT-GAGGCTCCCGCACATCCAAGCACCAAGG
* * ** *
87588449 TGCCAATGGTGCCTGTGGCTCCCGCACGA-CCAAGGGCCTAGG
1 TGCCGATGGTGCCTGAGGCTCCCGCAC-ATCCAAGCACCAAGG
* * *
87588491 TTACCGATGGTGTCC-CAGGCTCCCGCACATCCATGCACCAAGG
1 -TGCCGATGGTG-CCTGAGGCTCCCGCACATCCAAGCACCAAGG
* ** *
87588534 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGG
1 TGCCGATGGTGCCTGAGGCTCCCGCAC-ATCCAAGCACCAAGG
* * *
87588576 TTACCGATGGTGTCC-CAGGCTCCCGCACATCCATGCACCAAGG
1 -TGCCGATGGTG-CCTGAGGCTCCCGCACATCCAAGCACCAAGG
* ** *
87588619 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGG
1 TGCCGATGGTGCCTGAGGCTCCCGCAC-ATCCAAGCACCAAGG
* * * ** *
87588661 TGCCGATGGT-CCCGAGGCTCTCGCACGA-CCAGGGGCCTAGGG
1 TGCCGATGGTGCCTGAGGCTCCCGCAC-ATCCAAGCACC-AAGG
*** *
87588703 TGCCGATGGTG-CTCGAGGCTCCCGCACGA-CCAAGGGTCTAGG
1 TGCCGATGGTGCCT-GAGGCTCCCGCAC-ATCCAAGCACCAAGG
* * ** * *
87588745 TTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAGGGGCCTACGT
1 -TGCCGATGGTGCCTGAGGCTCCCGCAC-ATCCAAGCACC-AAGG
* * * ** *
87588789 TGCAGATGGTGCAC-GAGGCTCCTGCACGA-CCAGGGGCCTAGG
1 TGCCGATGGTGC-CTGAGGCTCCCGCAC-ATCCAAGCACCAAGG
* * ** *
87588831 TTGCCGATGGTGTCC-GA-GCTCCCGTACGA-CCAGGGGCCTAGG
1 -TGCCGATGGTG-CCTGAGGCTCCCGCAC-ATCCAAGCACCAAGG
* * * ** **
87588873 TTCCGATGGTGTCTGAGGCTCCCGCACCA-CCAGGGGCCTTGG
1 TGCCGATGGTGCCTGAGGCTCCCGCA-CATCCAAGCACCAAGG
* ** ** *
87588915 TTGCCGATGGTGCCCGAGGCTGTCGCACGA-CCAAGGGCCTAGG
1 -TGCCGATGGTGCCTGAGGCTCCCGCAC-ATCCAAGCACCAAGG
* ** *
87588958 TTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGG
1 -TGCCGATGGTGCCTGAGGCTCCCGCAC-ATCCAAGCACCAAGG
* * *
87589001 TTGCCAATGGTGTCC-GAGGCTCCTGCATATCCAAGGCACCAAGG
1 -TGCCGATGGTG-CCTGAGGCTCCCGCACATCCAA-GCACCAAGG
*
87589045 TGCCGATGCTG-CTCGAGGCTC
1 TGCCGATGGTGCCT-GAGGCTC
87589066 TTGCACCACT
Statistics
Matches: 649, Mismatches: 100, Indels: 77
0.79 0.12 0.09
Matches are distributed among these distances:
40 2 0.00
41 42 0.06
42 200 0.31
43 386 0.59
44 19 0.03
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.17
Consensus pattern (42 bp):
TGCCGATGGTGCCTGAGGCTCCCGCACATCCAAGCACCAAGG
Found at i:87588616 original size:170 final size:170
Alignment explanation
Indices: 87588229--87589065 Score: 908
Period size: 170 Copynumber: 4.9 Consensus size: 170
87588219 CATCCTACGT
* * * *
87588229 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGA
1 CCTAGGTTGCCGATGGTGTCCCAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGGTGCCCGA
* ** * *
87588294 GGCTCCCGCAC-ATCCGACGCACCAAGG-TGCCGATGGTG-CCTGAGGCTCCCGCACGACCAAGG
66 GGCTCCCGCACGA-CC-AAGGGCCTAGGTTGCCGATGGTGTCC-GAGGCTCCCGCACGACCAGGG
* * * *
87588356 GCCTAGGTTACCGATGGTGCCCGAGGCTCCGGCACGGCCAAGGG
128 GCCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * *
87588400 CCTAGGTTTCCGATGGTGTTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGGTGCCTGT
1 CCTAGGTTGCCGATGGTGTCCCAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGGTGCCCGA
* * * **
87588465 GGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGTCCCAGGCTCCCGCAC-ATCCATGCAC
66 GGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAGGGGC
87588529 CAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
130 CAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
87588570 CCTAGGTTACCGATGGTGTCCCAGGCTCCCGCACATCCATGCACCAAGGTGCCGATGGTGCCCGA
1 CCTAGGTTGCCGATGGTGTCCCAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGGTGCCCGA
* *
87588635 GGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGT-CCCGAGGCTCTCGCACGACCAGGGGCC
66 GGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAGGGGCC
* *
87588698 TAGGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGG
131 -AAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * ** * *
87588739 TCTAGGTTGCCGATGGTG-CCCGAGGCTCCCGCACGA-CCAGGGGCCTACGTTG-CAGATGGTGC
1 CCTAGGTTGCCGATGGTGTCCC-AGGCTCCCGCAC-ATCCAAGCACC-AAGGTGCCA-ATGGTGC
* * * *
87588801 ACGAGGCTCCTGCACGACCAGGGGCCTAGGTTGCCGATGGTGTCCGA-GCTCCCGTACGACCAGG
62 CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAGG
* * * * * *
87588865 GGCCTAGGTTCCGATGGTGTCTGAGGCTCCCGCACCACCAGGGG
127 GGCCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** ** * *
87588909 CCTTGGTTGCCGATGGTG-CCCGAGGCTGTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
1 CCTAGGTTGCCGATGGTGTCCC-AGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGGTGCC
* * *
87588972 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCAATGGTGTCCGAGGCTCCTGCA-TATCCAAG
63 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CC-AG
** * *
87589036 GCACCAAGGTGCCGATGCTGCTCGAGGCTC
126 GGGCCAAGGTGCCGATGGTGCCCGAGGCTC
87589066 TTGCACCACT
Statistics
Matches: 567, Mismatches: 82, Indels: 33
0.83 0.12 0.05
Matches are distributed among these distances:
168 22 0.04
169 84 0.15
170 289 0.51
171 141 0.25
172 31 0.05
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.17
Consensus pattern (170 bp):
CCTAGGTTGCCGATGGTGTCCCAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGGTGCCCGA
GGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAGGGGCC
AAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:87589874 original size:58 final size:59
Alignment explanation
Indices: 87589777--87589897 Score: 190
Period size: 58 Copynumber: 2.1 Consensus size: 59
87589767 GGGAGGGACA
* *
87589777 GGGACGATTCATTCATTGTTGGGTACCGAACATGCAACGGTATCTGAATTCTAGC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTGAATTCTACCTTTT
* * *
87589835 GGGACGGTTCATTCATTATTGGGTACCGAATATGTAACGGTATCTGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTGAATTCTACCTTTT
87589894 GGGA
1 GGGA
87589898 TTGGTCGTCG
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 50 0.88
59 7 0.12
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTGAATTCTACCTTTT
Found at i:87596369 original size:14 final size:14
Alignment explanation
Indices: 87596350--87596381 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
87596340 TCCAATCACC
87596350 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
87596364 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
87596378 GGGC
1 GGGC
87596382 TAAATGACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.16, G:0.47, T:0.31
Consensus pattern (14 bp):
GGGCCAGTTTGGTT
Found at i:87598595 original size:148 final size:148
Alignment explanation
Indices: 87598322--87598618 Score: 576
Period size: 148 Copynumber: 2.0 Consensus size: 148
87598312 CCATTCAATC
*
87598322 GGAAGGAGCGACGGGCGGTGTGTAGAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCG
1 GGAAGGAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCG
*
87598387 CTTACTAGGAATTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT
66 CTTACTAGGAATTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACAATGAAATTT
87598452 CAAAGATTACCCGGGCCT
131 CAAAGATTACCCGGGCCT
87598470 GGAAGGAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCG
1 GGAAGGAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCG
87598535 CTTACTAGGAATTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACAATGAAATTT
66 CTTACTAGGAATTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACAATGAAATTT
87598600 CAAAGATTACCCGGGCCT
131 CAAAGATTACCCGGGCCT
87598618 G
1 G
87598619 TCGGCCAAGG
Statistics
Matches: 147, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
148 147 1.00
ACGTcount: A:0.29, C:0.23, G:0.28, T:0.20
Consensus pattern (148 bp):
GGAAGGAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCG
CTTACTAGGAATTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACAATGAAATTT
CAAAGATTACCCGGGCCT
Found at i:87604461 original size:43 final size:43
Alignment explanation
Indices: 87604387--87605675 Score: 407
Period size: 43 Copynumber: 30.2 Consensus size: 43
87604377 CCTTCTTTAA
* *
87604387 CCCGCACATCCCAGGCACCAAGGTGCCGATGGGTGCCCGAGGCT
1 CCCGCACATCCCAAGCACCAAGGTACCGAT-GGTGCCCGAGGCT
* * * *
87604431 CCCGCACAT-TCAAGCACCAAGTTACTGATGGTGTCCGAGGCT
1 CCCGCACATCCCAAGCACCAAGGTACCGATGGTGCCCGAGGCT
* * * * *
87604473 CCCGCACCT-CCTAGCCACCGAGGTGCCGATGCTGCCCGAGGCT
1 CCCGCACATCCCAAG-CACCAAGGTACCGATGGTGCCCGAGGCT
** ** * *
87604516 CCCGCACGA--CCAAGGGCTGAGGTACCGATGGTGGCCGAGGCC
1 CCCGCAC-ATCCCAAGCACCAAGGTACCGATGGTGCCCGAGGCT
** *** *
87604558 CCCGCACGA--CCAAGGGCCTATTTTTCCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCCAAGCACC-AAGGTACCGATGGTGCCCGAGGCT
** ** * *
87604601 CCCGCACGA--CCAAGGGCTTAGTTTGCCGATGGTGCCCGA-GCTT
1 CCCGCAC-ATCCCAAGCACCAAG-GTACCGATGGTGCCCGAGGC-T
* ** * *
87604644 CTCGCACGA--CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCCAAGCACCAAGG-TACCGATGGTGCCCGAGGCT
* **
87604687 CCGGCACAT-CCAAGCACCAAGGTGTCGATGGTGCTCCGAGGCT
1 CCCGCACATCCCAAGCACCAAGGTACCGATGGTGC-CCGAGGCT
** ** * * *
87604730 CCCGCAC-GGCCAAGGGCCTAGTTTACCGATGGTGTCCGAGGCT
1 CCCGCACATCCCAAGCACCAAG-GTACCGATGGTGCCCGAGGCT
* *
87604773 CCCGCACATCCC-AGCACCTAGG-AGCCGATGGTGGCCGAGGCT
1 CCCGCACATCCCAAGCACCAAGGTA-CCGATGGTGCCCGAGGCT
* ** ***
87604815 CCCGCAGGA--CCAAGGGCCTATTTTACCGATGGTGCCCGAGGCT
1 CCCGCA-CATCCCAAGCACC-AAGGTACCGATGGTGCCCGAGGCT
** ** * *
87604858 CCCGCACGA--CCAAGGGCTTAGTTTACCGATGGTGCCCGAGCCT
1 CCCGCAC-ATCCCAAGCACCAAG-GTACCGATGGTGCCCGAGGCT
* ** * * * * *
87604901 CTCGCACGA--CCAAGGGCCTAGGTTGCCGATGGTACGCGAGGTT
1 CCCGCAC-ATCCCAAGCACCAAGG-TACCGATGGTGCCCGAGGCT
* * *
87604944 CTCGCACAT-CCAAGCACCAAGGTGCCGATGGTGCTCGAGGCT
1 CCCGCACATCCCAAGCACCAAGGTACCGATGGTGCCCGAGGCT
* ** * * * *
87604986 CCCGCACA-ACCAAGGGCCTAGGTTGCCGATAGTGTCCGAGGCT
1 CCCGCACATCCCAAGCACCAAGG-TACCGATGGTGCCCGAGGCT
* * *
87605029 CCCGCCCAT--CATAGCACCGAGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACATCCCA-AGCACCAAGGTACCGATGGTGCCCGAGGCT
* * * * *
87605071 CCCGTACGA--CCAAG-AGCCTAGTTTGCCGATGGTGTCCGAGGCT
1 CCCGCAC-ATCCCAAGCA-CCAAG-GTACCGATGGTGCCCGAGGCT
* * *** * * *
87605114 CTCGCACGA--CCAATGGC-CTATTTTGCCTATGGTGGCCGAGGCT
1 CCCGCAC-ATCCCAA--GCACCAAGGTACCGATGGTGCCCGAGGCT
** ** * * *
87605157 CCCGCACGA--CCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCT
1 CCCGCAC-ATCCCAAGCACCAAG-GTACCGATGGTGCCCGAGGCT
* ** * * ** *
87605200 CTCGCACGA--CCAAGGGCCTAAGTTGCCGACAGTGTCCGAGGCT
1 CCCGCAC-ATCCCAAGCACC-AAGGTACCGATGGTGCCCGAGGCT
*
87605243 CCCGCACAT--CATAGCACCGAGGTACCGATGGTGCCCGAGGCT
1 CCCGCACATCCCA-AGCACCAAGGTACCGATGGTGCCCGAGGCT
** *
87605285 CCCGCACGA--CCAAGGGCCTAGGTTACCGATGGTGCCCGA-GCTT
1 CCCGCAC-ATCCCAAGCACCAAGG-TACCGATGGTGCCCGAGGC-T
* *** * * *
87605328 CTCGCACGA--CCAAGGGTCTAGGTTGCCGATGGTGCCCGAGGTT
1 CCCGCAC-ATCCCAAGCACCAAGG-TACCGATGGTGCCCGAGGCT
* ** *
87605371 CCGGCACAT-CCAAGCACCAAGGTGTCGATGGTGCTCGAGGCT
1 CCCGCACATCCCAAGCACCAAGGTACCGATGGTGCCCGAGGCT
** ** * * *
87605413 CCCGCAC-GGCCAAGGGCCTAGTTTACCGATGGTGTCCGAGGCT
1 CCCGCACATCCCAAGCACCAAG-GTACCGATGGTGCCCGAGGCT
* *
87605456 CCCGCACATCCC-AGCACCTAGG-AGCCGATGGTGGCCGAGGCT
1 CCCGCACATCCCAAGCACCAAGGTA-CCGATGGTGCCCGAGGCT
* ** ***
87605498 CCCGCAGGA--CCAAGGGCCTATTTTACCGATGGTGCCCGAGGCT
1 CCCGCA-CATCCCAAGCACC-AAGGTACCGATGGTGCCCGAGGCT
** ** * *
87605541 CCCGCACGA--CCAAGGGCTTAGTTTACCGATGGTGCCCGAGCCT
1 CCCGCAC-ATCCCAAGCACCAAG-GTACCGATGGTGCCCGAGGCT
* ** * * ** *
87605584 CTCGCACGA--CCAAGGGCCTAAGTTGCCGACAGTGTCCGAGGCT
1 CCCGCAC-ATCCCAAGCACC-AAGGTACCGATGGTGCCCGAGGCT
* * * *
87605627 CCTGCACAT-CCTAGCACCAGGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACATCCCAAGCACCAAGGTACCGATGGTGCCCGAGGCT
87605669 CCCGCAC
1 CCCGCAC
87605676 GACCAAGGGC
Statistics
Matches: 986, Mismatches: 204, Indels: 112
0.76 0.16 0.09
Matches are distributed among these distances:
41 8 0.01
42 293 0.30
43 652 0.66
44 32 0.03
45 1 0.00
ACGTcount: A:0.18, C:0.34, G:0.30, T:0.17
Consensus pattern (43 bp):
CCCGCACATCCCAAGCACCAAGGTACCGATGGTGCCCGAGGCT
Found at i:87604640 original size:128 final size:127
Alignment explanation
Indices: 87604407--87605685 Score: 1070
Period size: 128 Copynumber: 10.0 Consensus size: 127
87604397 CCAGGCACCA
* * ** * * *
87604407 AGGTGCCGATGGGTGCCCGAGGCTCCCGCAC-ATTCAAGCACC-AAGTTACTGATGGTGTCCGAG
1 AGGTACCGAT-GGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAAGTTGCCGATGGTGCCCGAG
** * ** * * *
87604470 GCTCCCGCACCTCCTAGCCACCGAG-GTGCCGATGCTGCCCGAGGCTCCCGCACGACCAAGGGCT
64 GCTCCCGCACGACCAAG-GGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCT
* * ** *
87604534 GAGGTACCGATGGTGGCCGAGGCCCCCGCACGACCAAGGGCCTATTTTTCCGATGGTGCCCGAGG
1 -AGGTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAAGTTGCCGATGGTGCCCGAGG
* *
87604599 CTCCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGA-GCTTCTCGCACGACCAAGGGCCT
65 CTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGC-TCCCGCACGACCAAGGG-CT
* * ** * *
87604663 AGGTTGCCGATGGTGCCCGAGGCTCCGGCAC-ATCCAAGCACC-AAGGTGTCGATGGTGCTCCGA
1 AGG-TACCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAAGTTGCCGATGGTGC-CCGA
* * * * **
87604726 GGCTCCCGCACGGCCAAGGGCCTAGTTTACCGATGGTGTCCGAGGCTCCCGCAC-ATCCCAGCAC
63 GGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GG
87604790 CT
126 CT
* * ** *
87604792 AGG-AGCCGATGGTGGCCGAGGCTCCCGCAGGACCAAGGGCCTATTTTACCGATGGTGCCCGAGG
1 AGGTA-CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAAGTTGCCGATGGTGCCCGAGG
* * * *
87604856 CTCCCGCACGACCAAGGGCTTAGTTTACCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCT
65 CTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG-CT
* * * * * ** * *
87604920 AGGTTGCCGATGGTACGCGAGGTTCTCGCAC-ATCCAAGCACC-AAGGTGCCGATGGTGCTCGAG
1 AGG-TACCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAAGTTGCCGATGGTGCCCGAG
* * * * * * **
87604983 GCTCCCGCACAACCAAGGGCCTAGGTTGCCGATAGTGTCCGAGGCTCCCGC-CCATCATAGCACC
64 GCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AG-GGC
*
87605047 G
127 T
* * * *
87605048 AGGTGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGAGCCT-AGTTTGCCGATGGTGTCCGAGG
1 AGGTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAAG-TTGCCGATGGTGCCCGAGG
* * * * *
87605112 CTCTCGCACGACCAATGGCCTATTTTGCCTATGGTGGCCGAGGCTCCCGCACGACCAAGGGCTT
65 CTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC-T
* * * * ** *
87605176 AGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAAGTTGCCGACAGTGTCCGAGG
1 AG-GTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAAGTTGCCGATGGTGCCCGAGG
* ** * * *
87605241 CTCCCGCAC-ATCATAGCACCGAG-GTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
65 CTCCCGCACGACCA-AGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG-CT
* * *
87605304 AGGTTACCGATGGTGCCCGA-GCTTCTCGCACGACCAAGGGTCTAGGTTGCCGATGGTGCCCGAG
1 AGG-TACCGATGGTGCCCGAGGC-TCCCGCACGACCAAGGGCCTAAGTTGCCGATGGTGCCCGAG
* * ** * * * * *
87605368 GTTCCGGCAC-ATCCAAGCACCAAG-GTGTCGATGGTGCTCGAGGCTCCCGCACGGCCAAGGGCC
64 GCTCCCGCACGA-CCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG-C
87605431 T
127 T
* * * ** ** *
87605432 AGTTTACCGATGGTGTCCGAGGCTCCCGCAC-ATCCCAGCACCT-AGGAGCCGATGGTGGCCGAG
1 AG-GTACCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAAGTTGCCGATGGTGCCCGAG
* * *
87605495 GCTCCCGCAGGACCAAGGGCCTATTTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTT
64 GCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC-T
* * * ** *
87605560 AGTTTACCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAAGTTGCCGACAGTGTCCGAGG
1 AG-GTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAAGTTGCCGATGGTGCCCGAGG
* * ** **
87605625 CTCCTGCAC-ATCCTAGCACC-AGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
65 CTCCCGCACGA-CCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
87605686 CTATGCTACC
Statistics
Matches: 923, Mismatches: 186, Indels: 84
0.77 0.16 0.07
Matches are distributed among these distances:
127 99 0.11
128 587 0.64
129 233 0.25
130 4 0.00
ACGTcount: A:0.18, C:0.34, G:0.31, T:0.17
Consensus pattern (127 bp):
AGGTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAAGTTGCCGATGGTGCCCGAGGC
TCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCT
Found at i:87604673 original size:171 final size:170
Alignment explanation
Indices: 87604412--87605688 Score: 1234
Period size: 171 Copynumber: 7.5 Consensus size: 170
87604402 CACCAAGGTG
* * * * * * *
87604412 CCGATGGGTGCCCGAGGCTCCCGCACATTCAAGCACCAAGTTACTGATGGTGTCCGAGGCTCCCG
1 CCGAT-GGTGTCCGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCG
** * ** * * * *
87604477 CACCTCCTAGCCACCGAGG-TGCCGATGCTGCCCGAGGCTCCCGCACGACCAAGGGCTGAGGTAC
65 CACGACCAAG-GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTAAGGTGC
* * * *
87604541 CGATGGTGGCCGAGGCCCCCGCACGACCAAGGGCCTATTTTT
129 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTA
* ** * * *
87604583 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCTTAGTTTGCCGATGGTGCCCGA-GCTTCT
1 CCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCTAG-GTGCCGATGGTGCCCGAGGC-TCC
* ** *
87604646 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCGGCAC-ATCCAAGCACCAAGGT
63 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCTAAGGT
* *
87604710 GTCGATGGTGCTCCGAGGCTCCCGCACGGCCAAGGGCCTAGTTTA
127 GCCGATGGTGC-CCGAGGCTCCCGCACGACCAAGGGCCTAGTTTA
* * *
87604755 CCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACCTAGGAGCCGATGGTGGCCGAGGCTCCCGC
1 CCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGC
* ** * * * *
87604820 AGGACCAAGGGCCTATTTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTACC
66 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTAAG-GTGCC
* * * *
87604885 GATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTG
130 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTA
* * * * *
87604926 CCGATGGT-ACGCGAGGTTCTCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCG
1 CCGATGGTGTC-CGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCG
* * * * * ** **
87604990 CACAACCAAGGGCCTAGGTTGCCGATAGTGTCCGAGGCTCCCGC-CCATCATAGCACCGAGGTGC
65 CACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGGCTAAGGTGC
* * *
87605054 CGATGGTGCCCGAGGCTCCCGTACGACCAAGAGCCTAGTTTG
129 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTA
* * ** * *
87605096 CCGATGGTGTCCGAGGCTCTCGCACGA-CCAATG-GCCTATTTTGCCTATGGTGGCCGAGGCTCC
1 CCGATGGTGTCCGAGGCTCCCGCAC-ATCCAA-GCACCTA-GGTGCCGATGGTGCCCGAGGCTCC
* * * * *
87605159 CGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAAGTT
63 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG-CTAAGGT
** * * ** * *
87605224 GCCGACAGTGTCCGAGGCTCCCGCAC-ATCATAGCACCGAG-GTA
127 GCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGGCCTAGTTTA
* ** * *
87605267 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTACCGATGGTGCCCGA-GCTTCT
1 CCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCTAGG-TGCCGATGGTGCCCGAGGC-TCC
* * * ** *
87605330 CGCACGACCAAGGGTCTAGGTTGCCGATGGTGCCCGAGGTTCCGGCAC-ATCCAAGCACCAAGGT
63 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCTAAGGT
* * *
87605394 GTCGATGGTGCTCGAGGCTCCCGCACGGCCAAGGGCCTAGTTTA
127 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTA
* * *
87605438 CCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACCTAGGAGCCGATGGTGGCCGAGGCTCCCGC
1 CCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGC
* ** * * * *
87605503 AGGACCAAGGGCCTATTTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTACC
66 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTAAG-GTGCC
* * *
87605568 GATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAAG-TTG
130 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT-AGTTTA
** * *
87605609 CCGACAGTGTCCGAGGCTCCTGCACATCCTAGCACC-AGGGTGCCGATGGTGCCCGAGGCTCCCG
1 CCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCTA-GGTGCCGATGGTGCCCGAGGCTCCCG
87605673 CACGACCAAGGGCCTA
65 CACGACCAAGGGCCTA
87605689 TGCTACCGGA
Statistics
Matches: 896, Mismatches: 179, Indels: 62
0.79 0.16 0.05
Matches are distributed among these distances:
170 209 0.23
171 575 0.64
172 112 0.12
ACGTcount: A:0.18, C:0.34, G:0.31, T:0.17
Consensus pattern (170 bp):
CCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGC
ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTAAGGTGCCG
ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTA
Found at i:87605271 original size:427 final size:424
Alignment explanation
Indices: 87604535--87605682 Score: 1310
Period size: 427 Copynumber: 2.7 Consensus size: 424
87604525 CCAAGGGCTG
* * * * *
87604535 AGGTACCGATGGTGGC-CGAGGCCCCCGCACGACCAAGGGCCTATTTTTCCGATGGTGCCCGAGG
1 AGGTGCCGATGGT-GCTCGAGGCTCCCGCACGACCAAGGGCCTAGTTTACCGATGGTGTCCGAGG
* * ** * * *
87604599 CTCCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGA-GCTTCTCGCACGACCAAGGGCCT
65 CTCCCGC-CCATCAAGCACCTAG-GTGCCGATGGTGCCCGAGGC-TCCCGCACGACCAAGGGCCT
* * ** *
87604663 AGGTTGCCGATGGTGCCCGAGGCTCCGGCAC-ATCCAA-GCACCAAGGTGTCGATGGTGCTCCGA
127 AGTTTGCCGATGGTGCCCGAGGCTCC-GCACGA-CCAAGGC-CTAATTTGCCGATGGTGC-CCGA
* * * *
87604726 GGCTCCCGCACGGCCAAGGGCCTAGTTTACCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACC
188 GGCTCCCGCACGACCAAGGGCCTAGTTTACCGATGGTGCCCGAGCCTCCCGCACATCCAAGCACC
** * ** * **
87604791 TAGGAGCCGATGGTGGCCGAGGCTCCCGCAGGACCAAGGGCCTATTTTACCGATGGTGCCCGAGG
253 TAGGAGCCGACAGTGGCCGAGGCTCCCGCAGCACCAAGCACCGATGGTACCGATGGTGCCCGAGG
* *
87604856 CTCCCGCACGACCAAGGGCTTAGTTTACCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTA
318 CTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTA
*
87604921 GGTTGCCGATGGTACGCGAGGTTCTC-GCACATCCAAGCACCA
383 GGTTGCCGATGGTACCCGAGGTTC-CGGCACATCCAAGCACCA
* * * *
87604963 AGGTGCCGATGGTGCTCGAGGCTCCCGCACAACCAAGGGCCTAGGTTGCCGATAGTGTCCGAGGC
1 AGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGTTTACCGATGGTGTCCGAGGC
* * *
87605028 TCCCGCCCATCATAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGAGCCTAGT
66 TCCCGCCCATCA-AGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGT
* * * *
87605093 TTGCCGATGGTGTCCGAGGCTCTCGCACGACCAATGGCCTATTTTGCCTATGGTGGCCGAGGCTC
130 TTGCCGATGGTGCCCGAGGCTC-CGCACGACCAA-GGCCTAATTTGCCGATGGTGCCCGAGGCTC
* * * **
87605158 CCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGA-CCAAGGGCCTAAG
193 CCGCACGACCAAGGGCCTAGTTTACCGATGGTGCCCGAGCCTCCCGCAC-ATCCAAGCACCT-AG
** * *
87605222 TTGCCGACAGTGTCCGAGGCTCCCGCA-CATCATAGCACCGA-GGTACCGATGGTGCCCGAGGCT
256 GAGCCGACAGTGGCCGAGGCTCCCGCAGCACCA-AGCACCGATGGTACCGATGGTGCCCGAGGCT
* *
87605285 CCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGCTTCTCGCACGACCAAGGGTCTAGG
320 CCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGG
*
87605350 TTGCCGATGGTGCCCGAGGTTCCGGCACATCCAAGCACCA
385 TTGCCGATGGTACCCGAGGTTCCGGCACATCCAAGCACCA
* *
87605390 AGGTGTCGATGGTGCTCGAGGCTCCCGCACGGCCAAGGGCCTAGTTTACCGATGGTGTCCGAGGC
1 AGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGTTTACCGATGGTGTCCGAGGC
* * * * * *
87605455 TCCCGCACATCCCAGCACCTAGGAGCCGATGGTGGCCGAGGCTCCCGCAGGACCAAGGGCCTATT
66 TCCCGCCCAT-CAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGT
* * * * *
87605520 TTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTACCGATGGTGCCCGAGCCTC
130 TTGCCGATGGTGCCCGAGGCT-CCGCACGACCAA-GGCCTAATTTGCCGATGGTGCCCGAGGCTC
* * ** * * * *
87605585 TCGCACGACCAAGGGCCTAAG-TTGCCGACAGTGTCCGAGGCTCCTGCACATCCTAGCACC-AGG
193 CCGCACGACCAAGGGCCT-AGTTTACCGATGGTGCCCGAGCCTCCCGCACATCCAAGCACCTA-G
* ** *
87605648 GTGCCGATGGTGCCCGAGGCTCCCGCA-CGACCAAG
256 GAGCCGACAGTGGCCGAGGCTCCCGCAGC-ACCAAG
87605683 GGCCTATGCT
Statistics
Matches: 609, Mismatches: 94, Indels: 36
0.82 0.13 0.05
Matches are distributed among these distances:
425 1 0.00
426 29 0.05
427 463 0.76
428 114 0.19
429 2 0.00
ACGTcount: A:0.19, C:0.33, G:0.31, T:0.17
Consensus pattern (424 bp):
AGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGTTTACCGATGGTGTCCGAGGC
TCCCGCCCATCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTT
TGCCGATGGTGCCCGAGGCTCCGCACGACCAAGGCCTAATTTGCCGATGGTGCCCGAGGCTCCCG
CACGACCAAGGGCCTAGTTTACCGATGGTGCCCGAGCCTCCCGCACATCCAAGCACCTAGGAGCC
GACAGTGGCCGAGGCTCCCGCAGCACCAAGCACCGATGGTACCGATGGTGCCCGAGGCTCCCGCA
CGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCCG
ATGGTACCCGAGGTTCCGGCACATCCAAGCACCA
Found at i:87605334 original size:85 final size:85
Alignment explanation
Indices: 87604407--87605688 Score: 1059
Period size: 85 Copynumber: 15.0 Consensus size: 85
87604397 CCAGGCACCA
* * * *
87604407 AGGTGCCGATGGGTGCCCGAGGCTCCCGCAC-ATTCAAGCACC-AAGTTACTGATGGTGTCCGAG
1 AGGTGCCGAT-GGTGCCCGAGGCTCCCGCACGA-CCAAGCACCTAGGTTACCGATGGTGCCCGAG
** * ** *
87604470 GCTCCCGCACCTCCTAGCCACCG
64 GCTCCCGCACGACCAAG-GGCCT
* ** *
87604493 AGGTGCCGATGCTGCCCGAGGCTCCCGCACGACCAAG-GGCTGAGG-TACCGATGGTGGCCGAGG
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCACCT-AGGTTACCGATGGTGCCCGAGG
*
87604556 CCCCCGCACGACCAAGGGCCT
65 CTCCCGCACGACCAAGGGCCT
** * ** * * *
87604577 ATTTTTCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGA-G
1 A-GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCACCTAGGTTACCGATGGTGCCCGAGG
*
87604641 CTTCTCGCACGACCAAGGGCCT
65 C-TCCCGCACGACCAAGGGCCT
* *
87604663 AGGTTGCCGATGGTGCCCGAGGCTCCGGCAC-ATCCAAGCACCAAGGTGT--CGATGGTGCTCCG
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGCACCTAGGT-TACCGATGGTGC-CCG
*
87604725 AGGCTCCCGCACGGCCAAGGGCCT
62 AGGCTCCCGCACGACCAAGGGCCT
* * * * *
87604749 AGTTTACCGATGGTGTCCGAGGCTCCCGCAC-ATCCCAGCACCTAGG--AGCCGATGGTGGCCGA
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGCACCTAGGTTA-CCGATGGTGCCCGA
*
87604811 GGCTCCCGCAGGACCAAGGGCCT
63 GGCTCCCGCACGACCAAGGGCCT
** * ** * * *
87604834 ATTTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTACCGATGGTGCCCGAGC
1 A-GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCACCTAGGTTACCGATGGTGCCCGAGG
*
87604899 CTCTCGCACGACCAAGGGCCT
65 CTCCCGCACGACCAAGGGCCT
* * * * * * *
87604920 AGGTTGCCGATGGTACGCGAGGTTCTCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCTCGAG
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGCACCTAGGTTACCGATGGTGCCCGAG
*
87604983 GCTCCCGCACAACCAAGGGCCT
64 GCTCCCGCACGACCAAGGGCCT
* * * * * *
87605005 AGGTTGCCGATAGTGTCCGAGGCTCCCGC-CCATCATAGCACCGAGG-TGCCGATGGTGCCCGAG
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGCACCTAGGTTACCGATGGTGCCCGAG
* *
87605068 GCTCCCGTACGACCAAGAGCCT
64 GCTCCCGCACGACCAAGGGCCT
* * * * ** * * *
87605090 AGTTTGCCGATGGTGTCCGAGGCTCTCGCACGACCAATG-GCCTATTTTGCCTATGGTGGCCGAG
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA-GCACCTAGGTTACCGATGGTGCCCGAG
*
87605154 GCTCCCGCACGACCAAGGGCTT
64 GCTCCCGCACGACCAAGGGCCT
* * * ** * * ** *
87605176 AGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAAGTTGCCGACAGTGTCCGAGG
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCACCTAGGTTACCGATGGTGCCCGAGG
* ** *
87605241 CTCCCGCAC-ATCATAGCACCG
65 CTCCCGCACGACCA-AGGGCCT
* **
87605262 AGGTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGA-GC
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCACCTAGGTTACCGATGGTGCCCGAGGC
* *
87605326 TTCTCGCACGACCAAGGGTCT
66 -TCCCGCACGACCAAGGGCCT
* * * *
87605347 AGGTTGCCGATGGTGCCCGAGGTTCCGGCAC-ATCCAAGCACCAAGGTGT--CGATGGTGCTCGA
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGCACCTAGGT-TACCGATGGTGCCCGA
*
87605409 GGCTCCCGCACGGCCAAGGGCCT
63 GGCTCCCGCACGACCAAGGGCCT
* * * * *
87605432 AGTTTACCGATGGTGTCCGAGGCTCCCGCAC-ATCCCAGCACCTAGG--AGCCGATGGTGGCCGA
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGCACCTAGGTTA-CCGATGGTGCCCGA
*
87605494 GGCTCCCGCAGGACCAAGGGCCT
63 GGCTCCCGCACGACCAAGGGCCT
** * ** * * *
87605517 ATTTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTACCGATGGTGCCCGAGC
1 A-GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCACCTAGGTTACCGATGGTGCCCGAGG
*
87605582 CTCTCGCACGACCAAGGGCCT
65 CTCCCGCACGACCAAGGGCCT
* ** * * * * *
87605603 AAGTTGCCGACAGTGTCCGAGGCTCCTGCAC-ATCCTAGCACC-AGGGTGCCGATGGTGCCCGAG
1 -AGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGCACCTAGGTTACCGATGGTGCCCGAG
87605666 GCTCCCGCACGACCAAGGGCCT
64 GCTCCCGCACGACCAAGGGCCT
87605688 A
1 A
87605689 TGCTACCGGA
Statistics
Matches: 976, Mismatches: 174, Indels: 94
0.78 0.14 0.08
Matches are distributed among these distances:
84 10 0.01
85 533 0.55
86 426 0.44
87 7 0.01
ACGTcount: A:0.18, C:0.34, G:0.31, T:0.17
Consensus pattern (85 bp):
AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCACCTAGGTTACCGATGGTGCCCGAGGC
TCCCGCACGACCAAGGGCCT
Found at i:87605726 original size:24 final size:24
Alignment explanation
Indices: 87605699--87605764 Score: 105
Period size: 24 Copynumber: 2.8 Consensus size: 24
87605689 TGCTACCGGA
87605699 ACGGTTCACCGGAGCACCGACGGG
1 ACGGTTCACCGGAGCACCGACGGG
* *
87605723 ACGGTACACCGGAGCACCGCCGGG
1 ACGGTTCACCGGAGCACCGACGGG
*
87605747 ACGGATCACCGGAGCACC
1 ACGGTTCACCGGAGCACC
87605765 ACCGGGAACC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.23, C:0.36, G:0.35, T:0.06
Consensus pattern (24 bp):
ACGGTTCACCGGAGCACCGACGGG
Found at i:87605769 original size:24 final size:23
Alignment explanation
Indices: 87605693--87605771 Score: 97
Period size: 24 Copynumber: 3.3 Consensus size: 23
87605683 GGCCTATGCT
*
87605693 ACCGGAACGGTTCACCGGAGCACC
1 ACCGGGACGG-TCACCGGAGCACC
87605717 GA-CGGGACGGTACACCGGAGCACC
1 -ACCGGGACGGT-CACCGGAGCACC
*
87605741 GCCGGGACGGATCACCGGAGCACC
1 ACCGGGACGG-TCACCGGAGCACC
87605765 ACCGGGA
1 ACCGGGA
87605772 ACCTAACCGG
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
23 1 0.02
24 45 0.94
25 2 0.04
ACGTcount: A:0.24, C:0.35, G:0.35, T:0.05
Consensus pattern (23 bp):
ACCGGGACGGTCACCGGAGCACC
Found at i:87611216 original size:43 final size:42
Alignment explanation
Indices: 87611168--87611345 Score: 153
Period size: 43 Copynumber: 4.2 Consensus size: 42
87611158 TTTTCTTTAG
* ** *
87611168 CCCGCACATCCGAGGCACCAGGGTGCCCCTGCTACTCGAGGCA
1 CCCGCACATCCGAGGCACCAAGGTGCCAATGCT-CTCGAGGCT
* * * * * * *
87611211 CCCGCACATCCAACG-TCCTAGGTTGCCTATGGTGTCCGAGGCT
1 CCCGCACATCCGAGGCACCAAGG-TGCCAATGCTCT-CGAGGCT
* *
87611254 CCCGCACATCC-AAGCACCAACGTGCCAATGCTGCTCGAGGCT
1 CCCGCACATCCGAGGCACCAAGGTGCCAATGCT-CTCGAGGCT
* * *
87611296 CCCGCACATCCGAGGCACCAAGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACATCCGAGGCACCAAGGTGCCAATGCT-CTCGAGGCT
87611339 CCCGCAC
1 CCCGCAC
87611346 GACCAAGGGC
Statistics
Matches: 108, Mismatches: 22, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
42 33 0.31
43 75 0.69
ACGTcount: A:0.19, C:0.40, G:0.26, T:0.15
Consensus pattern (42 bp):
CCCGCACATCCGAGGCACCAAGGTGCCAATGCTCTCGAGGCT
Found at i:87611291 original size:85 final size:86
Alignment explanation
Indices: 87611168--87611345 Score: 216
Period size: 85 Copynumber: 2.1 Consensus size: 86
87611158 TTTTCTTTAG
* ** ** * *
87611168 CCCGCACATCCGAGGCACCAGGGTGCCCCTGCTACTCGAGGCACCCGCACATCCAACG-TCCTAG
1 CCCGCACATCCGAAGCACCAACGTGCCAATGCTACTCGAGGCACCCGCACATCCAACGCACCAAG
* *
87611232 GTTGCCTATGGTGTCCGAGGCT
66 G-TGCCGATGGTGCCCGAGGCT
* * * *
87611254 CCCGCACATCC-AAGCACCAACGTGCCAATGCTGCTCGAGGCTCCCGCACATCCGAGGCACCAAG
1 CCCGCACATCCGAAGCACCAACGTGCCAATGCTACTCGAGGCACCCGCACATCCAACGCACCAAG
87611318 GTGCCGATGGTGCCCGAGGCT
66 GTGCCGATGGTGCCCGAGGCT
87611339 CCCGCAC
1 CCCGCAC
87611346 GACCAAGGGC
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
85 62 0.79
86 16 0.21
ACGTcount: A:0.19, C:0.40, G:0.26, T:0.15
Consensus pattern (86 bp):
CCCGCACATCCGAAGCACCAACGTGCCAATGCTACTCGAGGCACCCGCACATCCAACGCACCAAG
GTGCCGATGGTGCCCGAGGCT
Found at i:87621099 original size:43 final size:43
Alignment explanation
Indices: 87621029--87621536 Score: 281
Period size: 43 Copynumber: 12.0 Consensus size: 43
87621019 NNNNNNNNNN
* * *
87621029 ACGACCAAGGGCCGAG-TTGCCGTTGGTGGCCGAGGCCCCCGC
1 ACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCCCCCGC
* * * *
87621071 ACGACCAAGAGCCTATTTTGCCGATGGTGCCAGAGGCTCCCGC
1 ACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCCCCCGC
* * *
87621114 GCGACCAAGGGCTTAGTTTGCCGATGGTGCCCGA-GCCTCTCGC
1 ACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCC-CCCGC
* * ** *
87621157 ACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGGTCTCGC
1 ACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCCCCCGC
** * * * * *
87621200 AC-ATCCAAGCACCAAG-GTACCGATGGTGCTCGAGGCTCCCGC
1 ACGA-CCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCCCCCGC
* * * ** * * *
87621242 ACGACCATGGGCGTAGGTTGCCGACAGAGTCCGAGGCTCCCGC
1 ACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCCCCCGC
* * * *
87621285 ACG-TCATA--GCATTGAG-GTGCCGATGGTGCCCGAGGCTCCCGC
1 ACGACCA-AGGGC-CT-AGTTTGCCGATGGTGCCCGAGGCCCCCGC
* * * **
87621327 ACGACCAAGGGCCTAGGTTGTCGATGGTG-CCAAGGGTTCCCGC
1 ACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGA-GGCCCCCGC
** * * * * * *
87621370 AC-ATCCAAGCACCAAG-GTGTCGATGGTGCTCGAGGCTCACGC
1 ACGA-CCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCCCCCGC
* ** * * *
87621412 ACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCTGC
1 ACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCCCCCGC
* ** * *
87621455 AC-ATCATAGCACCGAG-GTGCCGATGGTGCCCGAGGCTCCCC-C
1 ACGACCA-AGGGCCTAGTTTGCCGATGGTGCCCGAGGC-CCCCGC
* * *
87621497 ACGACCAAGGGCCGAG-GTGCCGATGGTGGCCGAGGCCCCC
1 ACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCCCCC
87621537 CCACTGAGGT
Statistics
Matches: 359, Mismatches: 86, Indels: 43
0.74 0.18 0.09
Matches are distributed among these distances:
41 6 0.02
42 158 0.44
43 192 0.53
44 3 0.01
ACGTcount: A:0.19, C:0.33, G:0.33, T:0.16
Consensus pattern (43 bp):
ACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCCCCCGC
Done.