Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 274 of 322
Found at i:90958933 original size:27 final size:27
Alignment explanation
Indices: 90958902--90959072 Score: 234
Period size: 27 Copynumber: 6.3 Consensus size: 27
90958892 TACAGGTCGA
** * *
90958902 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
90958929 AGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
90958956 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
90958983 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
90959010 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
90959037 GTGTATTTTAGTAATCTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
90959064 GGGTATTTT
1 GGGTATTTT
90959073 AAATACACAC
Statistics
Matches: 126, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 126 1.00
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:90969393 original size:50 final size:50
Alignment explanation
Indices: 90969339--90969772 Score: 417
Period size: 50 Copynumber: 8.6 Consensus size: 50
90969329 CTGGTATGCA
* * *
90969339 TAGTAGCCTGCACTTAGTACTACACATGCGACTTATCAATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* * * * *
90969389 TAGTAGCCTGCACTTAGTACTACATATGTGACTTATCCATCTGATACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* * ** * * *
90969439 TAGTAGCTTGCACTTAGTACTACACACGTGATCGAAGTTAA-CGGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAATCTGGTACACG
** *
90969490 TAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* * * * *
90969540 TAGTAGCTTGCACTTAGTACTAAACATGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* ** * * * *
90969590 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAACTATC-GAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCTATCAATCTG-GTACACG
* *
90969641 TAGTAGCCTGCACTTAGTACTACACATGGGACCTAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* * * * * *
90969691 TAGTAGCCTGCACTTAGTACTAAACACGTGGCCTA--AAACTGTCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTG--GT--ACACG
*
90969743 TAGTAGCCTGCACATAGTACTACACATGTG
1 TAGTAGCCTGCACTTAGTACTACACATGTG
90969773 TTCTCACAAC
Statistics
Matches: 316, Mismatches: 58, Indels: 18
0.81 0.15 0.05
Matches are distributed among these distances:
48 5 0.02
49 3 0.01
50 197 0.62
51 78 0.25
52 33 0.10
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
Found at i:90969511 original size:101 final size:100
Alignment explanation
Indices: 90969337--90969772 Score: 432
Period size: 101 Copynumber: 4.3 Consensus size: 100
90969327 CTCTGGTATG
* * *
90969337 CATAGTAGCCTGCACTTAGTACTACACATGCGA-CTTATCAATCTGGTACATGTAGTAGCCTGCA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAATCAATCTGGTACACGTAGTAGCCTGCA
* * *
90969401 CTTAGTACTACATATGTGACTTATCCATCTGATACA
66 CTTAGTACTACACATGTGACATATCAATC-GATACA
* * * * * * *
90969437 CATAGTAGCTTGCACTTAGTACTACACACGTGATCGAAGTTAA-CGGGTACACATAGTAGCCTGC
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-TCAATCTGGTACACGTAGTAGCCTGC
** * *
90969501 ACTTAGTACTACACATGCAACCTATCAATCCGGTACA
65 ACTTAGTACTACACATGTGACATATCAAT-CGATACA
* * * * *
90969538 CGTAGTAGCTTGCACTTAGTACTAAACATGTGACCTAA-CCATCTGATACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAATCAATCTGGTACACGTAGTAGCCTGCA
* * * * *
90969602 CTTAGTACTACACACGTGATCAAAACTATCGAGTACG
66 CTTAGTACTACACATGTGA-CATATCAATCGA-TACA
*
90969639 CATAGTAGCCTGCACTTAGTACTACACATGGGACCTAA-CAATCTGGTACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAATCAATCTGGTACACGTAGTAGCCTGCA
* * * * * * *
90969703 CTTAGTACTAAACACGTGGCCTA-AAACTGTCTTAAACA
66 CTTAGTACTACACATGTGACATATCAA---TC-GATACA
*
90969741 CATAGTAGCCTGCACATAGTACTACACATGTG
1 CATAGTAGCCTGCACTTAGTACTACACATGTG
90969773 TTCTCACAAC
Statistics
Matches: 275, Mismatches: 51, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
99 2 0.01
100 69 0.25
101 165 0.60
102 38 0.14
103 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (100 bp):
CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAATCAATCTGGTACACGTAGTAGCCTGCA
CTTAGTACTACACATGTGACATATCAATCGATACA
Found at i:90969611 original size:151 final size:151
Alignment explanation
Indices: 90969337--90969768 Score: 612
Period size: 151 Copynumber: 2.8 Consensus size: 151
90969327 CTCTGGTATG
* *
90969337 CATAGTAGCCTGCACTTAGTACTACACATGCGACTTATCAATCTGGTACATGTAGTAGCCTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCAC
* * * * *
90969402 TTAGTACTACATATGTGACTTATCCATCTGATACACATAGTAGCTTGCACTTAGTACTACACACG
66 TTAGTACTAAACATGTGACCTAACCATCTGATACACATAGTAGCCTGCACTTAGTACTACACACG
* ** *
90969467 TGATCGAAGTTAACGGGTACA
131 TGATCAAAACTAACGAGTACA
* * *
90969488 CATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCCGGTACACGTAGTAGCTTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCAC
*
90969553 TTAGTACTAAACATGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACG
66 TTAGTACTAAACATGTGACCTAACCATCTGATACACATAGTAGCCTGCACTTAGTACTACACACG
* *
90969618 TGATCAAAACTATCGAGTACG
131 TGATCAAAACTAACGAGTACA
* *
90969639 CATAGTAGCCTGCACTTAGTACTACACATGGGACCTAACAATCTGGTACACGTAGTAGCCTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCAC
* * ** * * *
90969704 TTAGTACTAAACACGTGGCCTAAAACTGTCTTAAACACATAGTAGCCTGCACATAGTACTACACA
66 TTAGTACTAAACATGTGACCT--AACCATCTGATACACATAGTAGCCTGCACTTAGTACTACACA
90969769 TGTGTTCTCA
Statistics
Matches: 249, Mismatches: 30, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
151 213 0.86
153 36 0.14
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (151 bp):
CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCAC
TTAGTACTAAACATGTGACCTAACCATCTGATACACATAGTAGCCTGCACTTAGTACTACACACG
TGATCAAAACTAACGAGTACA
Found at i:90970151 original size:19 final size:20
Alignment explanation
Indices: 90970123--90970169 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
90970113 AAGAACATGT
90970123 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
90970144 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
90970163 TATATAT
1 TATATAT
90970170 GCTTACAGCT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:90979637 original size:26 final size:26
Alignment explanation
Indices: 90979601--90979653 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
90979591 TCGATATGGG
90979601 ACATCATGTAAGACCATAGCTTGGCT
1 ACATCATGTAAGACCATAGCTTGGCT
90979627 ACATCATGTAAGACCATAGCTTGGCT
1 ACATCATGTAAGACCATAGCTTGGCT
90979653 A
1 A
90979654 TCGATATCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
ACATCATGTAAGACCATAGCTTGGCT
Found at i:90981515 original size:16 final size:16
Alignment explanation
Indices: 90981494--90981526 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
90981484 TAGGTCCAGT
90981494 CCAATGTATCATTCTA
1 CCAATGTATCATTCTA
90981510 CCAATGTATCATTCTA
1 CCAATGTATCATTCTA
90981526 C
1 C
90981527 TCATAGAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.27, G:0.06, T:0.36
Consensus pattern (16 bp):
CCAATGTATCATTCTA
Found at i:90983227 original size:22 final size:22
Alignment explanation
Indices: 90983199--90983263 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
90983189 GCAAATACAT
*
90983199 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
90983221 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
90983243 TTGGCGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
90983264 AATAATTGGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.31, C:0.23, G:0.26, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:90983466 original size:41 final size:41
Alignment explanation
Indices: 90983403--90983526 Score: 185
Period size: 41 Copynumber: 3.0 Consensus size: 41
90983393 CTTAAAAGCC
*
90983403 ACCGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTA
1 ACCGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCA
* * * *
90983444 ATCGGTGGATCCACAGTTGTCAAGTAACCATGCGATCCTCA
1 ACCGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCA
* *
90983485 ACCGGTGGATCCACGGTCATCAAGCAACCATGCGATCTTCA
1 ACCGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCA
90983526 A
1 A
90983527 TTTTTTCCTC
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 72 1.00
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.21
Consensus pattern (41 bp):
ACCGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCA
Found at i:90984096 original size:27 final size:27
Alignment explanation
Indices: 90983804--90984098 Score: 240
Period size: 27 Copynumber: 10.9 Consensus size: 27
90983794 GGTTATCTCA
* *
90983804 GTAATTTTACAAACCAATGGTATTTCT-
1 GTAATTTTACAAATCAAGGGTATTT-TG
**
90983831 GTAATTTTTGAAAGTCAAGGGTATTTCT-
1 GTAATTTTACAAA-TCAAGGGTATTT-TG
** **
90983859 GTAATTTTGTAAATCAAGGACATTTCT-
1 GTAATTTTACAAATCAAGGGTATTT-TG
* **
90983886 GTAATTTTCCAAATCAAGGGTATTTCA
1 GTAATTTTACAAATCAAGGGTATTTTG
*
90983913 GTAATTTTCCAAATC-AGAGGTATTTTG
1 GTAATTTTACAAATCAAG-GGTATTTTG
* * *
90983940 GTAATTTTACAAATCGAGGTTATTTCG
1 GTAATTTTACAAATCAAGGGTATTTTG
* * * *
90983967 GTAATTTCAAAAATTAATGGTATTTTG
1 GTAATTTTACAAATCAAGGGTATTTTG
* * *
90983994 GTAATTTTACAAACCAAGGGCATTATG
1 GTAATTTTACAAATCAAGGGTATTTTG
* *
90984021 GTAATTTTACAAACCAAGGATATTTTG
1 GTAATTTTACAAATCAAGGGTATTTTG
* *
90984048 GTAATTTTGCTAATCGAA-GGTATTTTG
1 GTAATTTTACAAATC-AAGGGTATTTTG
** *
90984075 GTAATTTTGTAAACCAAGGGTATT
1 GTAATTTTACAAATCAAGGGTATT
90984099 CAGTAATTCT
Statistics
Matches: 220, Mismatches: 42, Indels: 12
0.80 0.15 0.04
Matches are distributed among these distances:
26 4 0.02
27 189 0.86
28 27 0.12
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCAAGGGTATTTTG
Found at i:90984129 original size:27 final size:27
Alignment explanation
Indices: 90984097--90984198 Score: 123
Period size: 27 Copynumber: 3.8 Consensus size: 27
90984087 ACCAAGGGTA
90984097 TTCAGTAATTCTACCCTACAGGGGCAT
1 TTCAGTAATTCTACCCTACAGGGGCAT
* * * **
90984124 TTCAGTAATTCTATCCTATAAGGATAT
1 TTCAGTAATTCTACCCTACAGGGGCAT
*
90984151 TTCAGTAATTCTACCCTATAGGGGCAT
1 TTCAGTAATTCTACCCTACAGGGGCAT
* * *
90984178 TTCAATAATACTAGCCTACAG
1 TTCAGTAATTCTACCCTACAG
90984199 ATATGAGATT
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 62 1.00
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (27 bp):
TTCAGTAATTCTACCCTACAGGGGCAT
Found at i:90987314 original size:41 final size:41
Alignment explanation
Indices: 90987252--90987370 Score: 193
Period size: 41 Copynumber: 2.9 Consensus size: 41
90987242 TAAAAGCCAC
* * *
90987252 CGGTGGATCCACGGTCGTCAAGCAACTATGCCATCCTTAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTAAAT
*
90987293 CGGTGGATCCACGGTCATCAAGCAACCATGCGATCCTAAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTAAAT
*
90987334 CGATGGATCCACGGTCGTCAAGCAACCATGCGATCCT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCT
90987371 CAATTTCTTC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 72 1.00
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.21
Consensus pattern (41 bp):
CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTAAAT
Found at i:90987649 original size:27 final size:27
Alignment explanation
Indices: 90987619--90987673 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
90987609 TTGGTAAATC
90987619 TACAAACCAA-GGATATTTCAATAATTT
1 TACAAACCAATGG-TATTTCAATAATTT
**
90987646 TACAAACCAATGGTATTTCTGTAATTT
1 TACAAACCAATGGTATTTCAATAATTT
90987673 T
1 T
90987674 GTAAATCAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 23 0.92
28 2 0.08
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (27 bp):
TACAAACCAATGGTATTTCAATAATTT
Found at i:90987698 original size:54 final size:54
Alignment explanation
Indices: 90987640--90987808 Score: 189
Period size: 54 Copynumber: 3.1 Consensus size: 54
90987630 GATATTTCAA
* * ** *
90987640 TAATTTTACAAACCAATGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTTG
1 TAATTTTACAAATCAAGGGTATTTCTGTAATTTTACAAATCAGGGGTATTTTGG
* * *
90987694 TAATTTTCCAAATTAAGGGTATTT-TAGTAATTTTCCAAATCA-GGGTAATTTTGG
1 TAATTTTACAAATCAAGGGTATTTCT-GTAATTTTACAAATCAGGGGT-ATTTTGG
* * * * *
90987748 TAATTTTACACATCGAGGGTATTTCGGTAATTTCACAAATCAGGAGTATTTTGG
1 TAATTTTACAAATCAAGGGTATTTCTGTAATTTTACAAATCAGGGGTATTTTGG
90987802 TAATTTT
1 TAATTTT
90987809 GCTAATCACC
Statistics
Matches: 96, Mismatches: 15, Indels: 8
0.81 0.13 0.07
Matches are distributed among these distances:
53 5 0.05
54 88 0.92
55 3 0.03
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.43
Consensus pattern (54 bp):
TAATTTTACAAATCAAGGGTATTTCTGTAATTTTACAAATCAGGGGTATTTTGG
Found at i:90987816 original size:27 final size:26
Alignment explanation
Indices: 90987640--90987808 Score: 160
Period size: 27 Copynumber: 6.3 Consensus size: 26
90987630 GATATTTCAA
* *
90987640 TAATTTTACAAACCAATGGTATTTCT-G
1 TAATTTTACAAATC-AGGGTATTT-TGG
** *
90987667 TAATTTTGTAAATCAGGGGTATTTTTG
1 TAATTTTACAAATCA-GGGTATTTTGG
* * *
90987694 TAATTTTCCAAATTAAGGGTATTTTAG
1 TAATTTTACAAA-TCAGGGTATTTTGG
*
90987721 TAATTTTCCAAATCAGGGTAATTTTGG
1 TAATTTTACAAATCAGGGT-ATTTTGG
* *
90987748 TAATTTTACACATCGAGGGTATTTCGG
1 TAATTTTACAAATC-AGGGTATTTTGG
*
90987775 TAATTTCACAAATCAGGAGTATTTTGG
1 TAATTTTACAAATCAGG-GTATTTTGG
90987802 TAATTTT
1 TAATTTT
90987809 GCTAATCACC
Statistics
Matches: 119, Mismatches: 17, Indels: 12
0.80 0.11 0.08
Matches are distributed among these distances:
26 11 0.09
27 101 0.85
28 7 0.06
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.43
Consensus pattern (26 bp):
TAATTTTACAAATCAGGGTATTTTGG
Found at i:90991697 original size:19 final size:18
Alignment explanation
Indices: 90991673--90991720 Score: 50
Period size: 16 Copynumber: 2.8 Consensus size: 18
90991663 AAATAATAAT
90991673 TTATTTTTTATAAAACAA
1 TTATTTTTTATAAAACAA
*
90991691 TTCA---TTTATAAAATAA
1 TT-ATTTTTTATAAAACAA
90991707 TTATTTTTT-TAAAA
1 TTATTTTTTATAAAA
90991721 TTTTGATGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 9
0.71 0.03 0.26
Matches are distributed among these distances:
15 1 0.04
16 13 0.52
17 5 0.20
18 5 0.20
19 1 0.04
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (18 bp):
TTATTTTTTATAAAACAA
Found at i:90998687 original size:38 final size:38
Alignment explanation
Indices: 90998636--90998715 Score: 160
Period size: 38 Copynumber: 2.1 Consensus size: 38
90998626 ATGTTAAATG
90998636 ATGAGCTCATCTAGTTAAATTACATAATACATGATTAT
1 ATGAGCTCATCTAGTTAAATTACATAATACATGATTAT
90998674 ATGAGCTCATCTAGTTAAATTACATAATACATGATTAT
1 ATGAGCTCATCTAGTTAAATTACATAATACATGATTAT
90998712 ATGA
1 ATGA
90998716 CTAACTTATT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 42 1.00
ACGTcount: A:0.40, C:0.12, G:0.11, T:0.36
Consensus pattern (38 bp):
ATGAGCTCATCTAGTTAAATTACATAATACATGATTAT
Found at i:91009047 original size:55 final size:53
Alignment explanation
Indices: 91008986--91009167 Score: 197
Period size: 55 Copynumber: 3.4 Consensus size: 53
91008976 AGGGTTTAAG
* *
91008986 GATACCATGTAAGACCATGCCAAGGAATGGAAATTGGTAAGGTTTCTAAGGCAAT
1 GATACCATGTAAGACCATGCCAAGGAATGG-CATTGGTAA-GTTTCTAAGGCAAA
** * *
91009041 GATACCATGTAAGACCATGTGAA-GACATGGCATTGATAAGTTACTATAAGGCAAA
1 GATACCATGTAAGACCATGCCAAGGA-ATGGCATTGGTAAGTT--TCTAAGGCAAA
* * * * *
91009096 GGTCCCATGTAAGACCATGCCAAGGTATGGCATTGGTGAG-TTCATAAGGCAAC
1 GATACCATGTAAGACCATGCCAAGGAATGGCATTGGTAAGTTTC-TAAGGCAAA
91009149 GATACCATGTAAGACCATG
1 GATACCATGTAAGACCATG
91009168 TCGAGACATG
Statistics
Matches: 105, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
52 1 0.01
53 28 0.27
54 10 0.10
55 65 0.62
56 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (53 bp):
GATACCATGTAAGACCATGCCAAGGAATGGCATTGGTAAGTTTCTAAGGCAAA
Found at i:91009450 original size:16 final size:16
Alignment explanation
Indices: 91009429--91009459 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
91009419 ATAAATTTGA
91009429 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
91009445 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
91009460 AGTGAAGATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:91012330 original size:40 final size:40
Alignment explanation
Indices: 91012285--91012472 Score: 281
Period size: 40 Copynumber: 4.7 Consensus size: 40
91012275 GCTACTTACT
*
91012285 CAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
91012325 CAAATGCCTTTGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
91012365 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * * *
91012405 CAAATGCCTTCGGG-CTTAGCTCAG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
91012444 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
91012473 CATCCGAATA
Statistics
Matches: 133, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
38 1 0.01
39 32 0.24
40 99 0.74
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:91020393 original size:40 final size:40
Alignment explanation
Indices: 91020349--91020572 Score: 362
Period size: 40 Copynumber: 5.6 Consensus size: 40
91020339 GCTACTTACT
*
91020349 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
91020389 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
91020429 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
91020469 CAAATGCCTTCGGGACTTAGCTCGAATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
91020509 CAAATGCCTTCGGG-CTTAGCCC-GAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
*
91020548 CAAATGCCTTCAGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
91020573 TTATCATCCG
Statistics
Matches: 172, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
38 2 0.01
39 30 0.17
40 139 0.81
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:91042827 original size:15 final size:15
Alignment explanation
Indices: 91042807--91042835 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
91042797 TCTTTTTAGC
91042807 TTGAAAATTGATAGA
1 TTGAAAATTGATAGA
91042822 TTGAAAATTGATAG
1 TTGAAAATTGATAG
91042836 TTTAGTTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.21, T:0.34
Consensus pattern (15 bp):
TTGAAAATTGATAGA
Found at i:91046024 original size:29 final size:29
Alignment explanation
Indices: 91045991--91046064 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
91045981 GTTGTGAGAT
* *
91045991 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* * *
91046020 TGGCACTAACTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
91046049 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
91046065 CGGTTGATTA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 6 0.16
29 32 0.84
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:91052167 original size:7 final size:8
Alignment explanation
Indices: 91052142--91052169 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
91052132 AATAGGGGTT
91052142 AAATTGAA
1 AAATTGAA
91052150 AAATTGAA
1 AAATTGAA
91052158 AAATTGAA
1 AAATTGAA
91052166 AAAT
1 AAAT
91052170 ATTCATGGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.64, C:0.00, G:0.11, T:0.25
Consensus pattern (8 bp):
AAATTGAA
Found at i:91052826 original size:7 final size:7
Alignment explanation
Indices: 91052814--91052842 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
91052804 AGTGAGCATT
91052814 ATATGAG
1 ATATGAG
91052821 ATATGAG
1 ATATGAG
91052828 ATATGAG
1 ATATGAG
91052835 AT-TGAG
1 ATATGAG
91052841 AT
1 AT
91052843 GGCTTCGGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.41, C:0.00, G:0.28, T:0.31
Consensus pattern (7 bp):
ATATGAG
Found at i:91053594 original size:11 final size:11
Alignment explanation
Indices: 91053578--91053604 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
91053568 TTATTATTCA
91053578 ATATTAAACCT
1 ATATTAAACCT
91053589 ATATTAAACCT
1 ATATTAAACCT
91053600 ATATT
1 ATATT
91053605 TCTATTCTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (11 bp):
ATATTAAACCT
Found at i:91053832 original size:18 final size:19
Alignment explanation
Indices: 91053809--91053852 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
91053799 CAATCAATTC
* *
91053809 ATTTATACATATTTAA-TA
1 ATTTATACATATCTAACGA
*
91053827 ATTTATATATATCTAACGA
1 ATTTATACATATCTAACGA
91053846 ATTTATA
1 ATTTATA
91053853 TTACCATGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 14 0.64
19 8 0.36
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (19 bp):
ATTTATACATATCTAACGA
Found at i:91061575 original size:18 final size:19
Alignment explanation
Indices: 91061552--91061595 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
91061542 CAATCAATTC
* *
91061552 ATTTATACATATTTAA-TA
1 ATTTATACATATCTAACGA
*
91061570 ATTTATATATATCTAACGA
1 ATTTATACATATCTAACGA
91061589 ATTTATA
1 ATTTATA
91061596 TTACCATGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 14 0.64
19 8 0.36
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (19 bp):
ATTTATACATATCTAACGA
Found at i:91070510 original size:25 final size:25
Alignment explanation
Indices: 91070473--91070524 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
91070463 AAGGAATTCG
91070473 CACACACACAGTGC-CTCTAATCATT
1 CACACACACAGTGCTCT-TAATCATT
* *
91070498 CACACACATAGTGCTCTTATTCATT
1 CACACACACAGTGCTCTTAATCATT
91070523 CA
1 CA
91070525 TTATTACACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 22 0.92
26 2 0.08
ACGTcount: A:0.31, C:0.33, G:0.08, T:0.29
Consensus pattern (25 bp):
CACACACACAGTGCTCTTAATCATT
Found at i:91070744 original size:40 final size:40
Alignment explanation
Indices: 91070700--91070916 Score: 299
Period size: 40 Copynumber: 5.4 Consensus size: 40
91070690 CCAGCATGAT
* * * * *
91070700 TGCTCTTCGGGACCTAGCCCAGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
91070740 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
91070780 TGCTCTTCGGAACTTAGCCCGGAGACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
91070820 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
91070860 TGCTCTTCGGAACTTAGCCCAGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
91070900 TGCTCTTCGGGACTTAG
1 TGCTCTTCGGGACTTAG
91070917 AACCCGAATT
Statistics
Matches: 156, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 156 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:91071044 original size:40 final size:40
Alignment explanation
Indices: 91070924--91071044 Score: 199
Period size: 40 Copynumber: 3.0 Consensus size: 40
91070914 TAGAACCCGA
* * *
91070924 ATTTAGTAACTCGCACAAATGCCTTCGG-GCTTAGCCCGG
1 ATTTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
*
91070963 AATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 ATTTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
91071003 ATTTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 ATTTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
91071043 AT
1 AT
91071045 ATGGTCACTT
Statistics
Matches: 76, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 26 0.34
40 50 0.66
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.30
Consensus pattern (40 bp):
ATTTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
Found at i:91071067 original size:40 final size:40
Alignment explanation
Indices: 91070927--91071083 Score: 162
Period size: 40 Copynumber: 4.0 Consensus size: 40
91070917 AACCCGAATT
* * * *
91070927 TAGTAACTCGCACAAATGCCTTCGG-GCTTAGCCCGGA-A
1 TAGTATCTAGCACAAATGCCTTCGGATCTTAGTCCGGATA
* *
91070965 TTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
1 -TAGTATCTAGCACAAATGCCTTCGGATCTTAGTCCGGATA
*
91071006 TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATA
1 TAGTATCTAGCACAAATGCCTTCGGATCTTAGTCCGGATA
* *
91071046 TGGTCA-CTTAGCACAAA-GCCTTCGGGA-CTTAGCCCGGA
1 TAGT-ATC-TAGCACAAATGCCTTC-GGATCTTAGTCCGGA
91071084 CATCATTTGA
Statistics
Matches: 105, Mismatches: 8, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
39 24 0.23
40 69 0.66
41 12 0.11
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
TAGTATCTAGCACAAATGCCTTCGGATCTTAGTCCGGATA
Found at i:91071083 original size:80 final size:79
Alignment explanation
Indices: 91070898--91071083 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 79
91070888 CACTAGCATG
*
91070898 AATGCTCTTCGGGACTTAGAACCCGAATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGG
1 AATGC-CTTCGGGACTTAG--CCCGGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGG
*
91070963 AATTAGTATCTCGCACA
63 AATTAGTATCTAGCACA
* * * *
91070980 AATGCCTTC-GGATCTTAGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG-
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGG-GCTTAGCCCGGA
*
91071043 ATATGGTCA-CTTAGCACA
64 AT-TAGT-ATC-TAGCACA
91071061 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
91071084 CATCATTTGA
Statistics
Matches: 90, Mismatches: 8, Indels: 14
0.80 0.07 0.12
Matches are distributed among these distances:
79 32 0.36
80 32 0.36
81 21 0.23
82 5 0.06
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (79 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAAT
TAGTATCTAGCACA
Found at i:91071445 original size:56 final size:56
Alignment explanation
Indices: 91071378--91071490 Score: 208
Period size: 56 Copynumber: 2.0 Consensus size: 56
91071368 GGAATTCATT
91071378 ACAATAAATAAACACATTTTCAATTGTCAGAAATCACCACACTATCAAATAATCAC
1 ACAATAAATAAACACATTTTCAATTGTCAGAAATCACCACACTATCAAATAATCAC
* *
91071434 ACAATAAATAAACACATTTTTAATTGTCAGAAATCACCACACTATCAAATATTCAC
1 ACAATAAATAAACACATTTTCAATTGTCAGAAATCACCACACTATCAAATAATCAC
91071490 A
1 A
91071491 TAATGGCATG
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.48, C:0.22, G:0.04, T:0.27
Consensus pattern (56 bp):
ACAATAAATAAACACATTTTCAATTGTCAGAAATCACCACACTATCAAATAATCAC
Found at i:91073352 original size:28 final size:27
Alignment explanation
Indices: 91073289--91073440 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
91073279 ATATTAAGTC
* *
91073289 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
91073316 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
91073344 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
91073371 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
91073399 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
91073426 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
91073441 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:91073373 original size:55 final size:55
Alignment explanation
Indices: 91073289--91073465 Score: 264
Period size: 55 Copynumber: 3.2 Consensus size: 55
91073279 ATATTAAGTC
* * *
91073289 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
91073344 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * *
91073399 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAA-TCAAACT
91073455 CGCACACTTAG
1 CGCACACTTAG
91073466 CGCCAATCTC
Statistics
Matches: 111, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
55 95 0.86
56 16 0.14
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:91073937 original size:12 final size:12
Alignment explanation
Indices: 91073920--91073945 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
91073910 ATGGCATACT
91073920 TATGTATATATA
1 TATGTATATATA
91073932 TATGTATATATA
1 TATGTATATATA
91073944 TA
1 TA
91073946 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:91080642 original size:24 final size:24
Alignment explanation
Indices: 91080608--91080777 Score: 214
Period size: 24 Copynumber: 7.0 Consensus size: 24
91080598 CAACCGAACA
* *
91080608 TTTTCATCTCAATTGAGCTTACCG
1 TTTTCAGCTCAATAGAGCTTACCG
*
91080632 TTTTCAGCTCAATAGAGCTTACCA
1 TTTTCAGCTCAATAGAGCTTACCG
* *
91080656 TTTTCATCTCAATTGAGCTTACCG
1 TTTTCAGCTCAATAGAGCTTACCG
*
91080680 TTTTCAGCTCAATAGAGCTTACCA
1 TTTTCAGCTCAATAGAGCTTACCG
* *
91080704 TTTTCATCTCAATTGAGCTTACCG
1 TTTTCAGCTCAATAGAGCTTACCG
**
91080728 TTTTCAGCTCAATAGAGCTTATTG
1 TTTTCAGCTCAATAGAGCTTACCG
**
91080752 TTTATCAGCTCAGGAGGAGCTTACCG
1 TTT-TCAGCTCAATA-GAGCTTACCG
91080778 ACCATGCCTC
Statistics
Matches: 124, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
24 107 0.86
25 9 0.07
26 8 0.06
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (24 bp):
TTTTCAGCTCAATAGAGCTTACCG
Found at i:91080677 original size:48 final size:48
Alignment explanation
Indices: 91080606--91080748 Score: 286
Period size: 48 Copynumber: 3.0 Consensus size: 48
91080596 CCCAACCGAA
91080606 CATTTTCATCTCAATTGAGCTTACCGTTTTCAGCTCAATAGAGCTTAC
1 CATTTTCATCTCAATTGAGCTTACCGTTTTCAGCTCAATAGAGCTTAC
91080654 CATTTTCATCTCAATTGAGCTTACCGTTTTCAGCTCAATAGAGCTTAC
1 CATTTTCATCTCAATTGAGCTTACCGTTTTCAGCTCAATAGAGCTTAC
91080702 CATTTTCATCTCAATTGAGCTTACCGTTTTCAGCTCAATAGAGCTTA
1 CATTTTCATCTCAATTGAGCTTACCGTTTTCAGCTCAATAGAGCTTA
91080749 TTGTTTATCA
Statistics
Matches: 95, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 95 1.00
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (48 bp):
CATTTTCATCTCAATTGAGCTTACCGTTTTCAGCTCAATAGAGCTTAC
Found at i:91083950 original size:38 final size:38
Alignment explanation
Indices: 91083885--91083958 Score: 105
Period size: 38 Copynumber: 1.9 Consensus size: 38
91083875 GGCAAAATTG
91083885 CCTTTTTATTTTCTAAGTAACCGAGGCTTCAGCAGGTTT
1 CCTTTTTATTTTC-AAGTAACCGAGGCTTCAGCAGGTTT
* *
91083924 CCTTTTTATTTTGC-AGTAACTGAGGCTTTAGCAGG
1 CCTTTTTATTTT-CAAGTAACCGAGGCTTCAGCAGG
91083959 AATAGATTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
38 19 0.59
39 12 0.38
40 1 0.03
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (38 bp):
CCTTTTTATTTTCAAGTAACCGAGGCTTCAGCAGGTTT
Found at i:91085709 original size:27 final size:26
Alignment explanation
Indices: 91085679--91085793 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
91085669 ATGGAGGAAG
*
91085679 TGTTTTGGTGGCTATGCCACAACTATC
1 TGTTCTGGTGGCTATGCCACAA-TATC
91085706 TGTTTCTGGTGGCTATGCCACAAATATC
1 TG-TTCTGGTGGCTATGCCAC-AATATC
* *
91085734 TGTTCTGGTGGTTCTGCCACAATATC
1 TGTTCTGGTGGCTATGCCACAATATC
* * *
91085760 TGTATCTGGTGACTTTGTCACAATATC
1 TGT-TCTGGTGGCTATGCCACAATATC
91085787 TGTTCTG
1 TGTTCTG
91085794 ACAGCCATGC
Statistics
Matches: 78, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
26 13 0.17
27 40 0.51
28 23 0.29
29 2 0.03
ACGTcount: A:0.18, C:0.21, G:0.22, T:0.39
Consensus pattern (26 bp):
TGTTCTGGTGGCTATGCCACAATATC
Found at i:91101193 original size:40 final size:39
Alignment explanation
Indices: 91101136--91101358 Score: 293
Period size: 40 Copynumber: 5.6 Consensus size: 39
91101126 CGGATGATAA
* * *
91101136 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
* * *
91101176 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
* *
91101216 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACCT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
*
91101256 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T
* *
91101296 CCGGGCTAAGTCCCGAAGGCATTGGCGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T
*
91101336 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
91101359 CGAGTAAGTA
Statistics
Matches: 166, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 166 1.00
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATT
Found at i:91101349 original size:120 final size:120
Alignment explanation
Indices: 91101136--91101358 Score: 342
Period size: 120 Copynumber: 1.9 Consensus size: 120
91101126 CGGATGATAA
* * *
91101136 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCTGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGG
* *
91101201 TGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACCT
66 CGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACCT
*
91101256 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCT-ACTA-TATCCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAG-TGACTAGT-TCCGGGCTAAGTCCCGAAGGCATT
* *
91101319 GGCGCGAGTTACTATATCCGGGCTATGTCCCGAAGGCATT
64 GGCGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATT
91101359 CGAGTAAGTA
Statistics
Matches: 93, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
119 1 0.01
120 91 0.98
121 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.26
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGG
CGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACCT
Found at i:91103368 original size:27 final size:26
Alignment explanation
Indices: 91103298--91103410 Score: 147
Period size: 27 Copynumber: 4.2 Consensus size: 26
91103288 GGAGGAAGCA
91103298 TTCTGGTGGCTATGCCACAACTATCTG
1 TTCTGGTGGCTATGCCACAA-TATCTG
91103325 TTTCTGGTGGCTATGCCACAAATATCTG
1 -TTCTGGTGGCTATGCCAC-AATATCTG
*
91103353 TTCTGGTGGCTCTGCCACAATATCTG
1 TTCTGGTGGCTATGCCACAATATCTG
* *
91103379 TATCTGGTGACCT-TGTCACAATATCTG
1 T-TCTGGTG-GCTATGCCACAATATCTG
91103406 TTCTG
1 TTCTG
91103411 ACAGCCATGC
Statistics
Matches: 79, Mismatches: 3, Indels: 8
0.88 0.03 0.09
Matches are distributed among these distances:
26 13 0.16
27 38 0.48
28 26 0.33
29 2 0.03
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (26 bp):
TTCTGGTGGCTATGCCACAATATCTG
Found at i:91107667 original size:37 final size:37
Alignment explanation
Indices: 91107617--91107690 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
91107607 AATCCAGTTC
*
91107617 CGTAAATTTTCCCCGGAACTAGACTCATATATCTATA
1 CGTAAATTTTCCCCGGAACTAAACTCATATATCTATA
91107654 CGTAAATTTTCCCCGGAACTAAACTCATATATCTATA
1 CGTAAATTTTCCCCGGAACTAAACTCATATATCTATA
91107691 TGGTAGAATT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.34, C:0.24, G:0.09, T:0.32
Consensus pattern (37 bp):
CGTAAATTTTCCCCGGAACTAAACTCATATATCTATA
Found at i:91109054 original size:27 final size:26
Alignment explanation
Indices: 91109037--91109106 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
91109027 ATATTAAGTC
91109037 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
91109064 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
91109092 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
91109107 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:91109100 original size:28 final size:28
Alignment explanation
Indices: 91109037--91109131 Score: 129
Period size: 28 Copynumber: 3.4 Consensus size: 28
91109027 ATATTAAGTC
*
91109037 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
91109064 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
91109092 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
91109121 CGCACACTTAG
1 CGCACACTTAG
91109132 CACCGATCTC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.36
28 23 0.38
29 16 0.26
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:91116852 original size:29 final size:27
Alignment explanation
Indices: 91116834--91116903 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
91116824 ATATTAAGTC
91116834 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
91116861 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
91116889 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
91116904 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:91116897 original size:28 final size:28
Alignment explanation
Indices: 91116834--91116931 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
91116824 ATATTAAGTC
*
91116834 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
91116861 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
91116889 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
91116918 CGCACACTTAGTGC
1 CGCACACTTAGTGC
91116932 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:91121189 original size:22 final size:22
Alignment explanation
Indices: 91121164--91121213 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
91121154 AAACATACAT
*
91121164 CACATATCTCATGAGCTCAGAC
1 CACATATCTCAAGAGCTCAGAC
*
91121186 CACATATCTCAAGAGCTCAGAT
1 CACATATCTCAAGAGCTCAGAC
91121208 CACATA
1 CACATA
91121214 GTTCCTAGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.36, C:0.30, G:0.12, T:0.22
Consensus pattern (22 bp):
CACATATCTCAAGAGCTCAGAC
Found at i:91152224 original size:40 final size:41
Alignment explanation
Indices: 91152165--91152336 Score: 210
Period size: 40 Copynumber: 4.3 Consensus size: 41
91152155 CATTTGAATG
* * * *
91152165 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATT
*
91152205 TTATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATT
* *
91152245 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATT
* * **
91152285 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATT
91152325 ATATCC-GGCTAA
1 ATATCCGGGCTAA
91152337 ATTCTGAAGA
Statistics
Matches: 114, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
39 7 0.06
40 104 0.91
41 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATT
Found at i:91155733 original size:46 final size:46
Alignment explanation
Indices: 91155683--91155858 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
91155673 TGGTTGAGCA
*
91155683 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
91155729 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* ** *
91155776 TCCAAACTCGTTGAGTTGAGTCCGAGTTCACGCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
91155822 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGA-TTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGG
91155859 GTGGGTTACA
Statistics
Matches: 104, Mismatches: 18, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 59 0.57
47 29 0.28
48 2 0.02
50 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:91155839 original size:93 final size:93
Alignment explanation
Indices: 91155680--91155851 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
91155670 GGATGGTTGA
* ** * * *
91155680 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACGCATGGATGCAAACGCCCGAACTCATTGAGT
91155745 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
91155773 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACGCATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACGCATGGATGCAAACGCCCGAACTCATTGAGT
91155838 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
91155852 ATTATGGGTG
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACGCATGGATGCAAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:91162481 original size:16 final size:15
Alignment explanation
Indices: 91162462--91162500 Score: 60
Period size: 16 Copynumber: 2.5 Consensus size: 15
91162452 CTTTCCATCC
91162462 TTTCCTTTCCTTTCT
1 TTTCCTTTCCTTTCT
*
91162477 TTTTCTCTTCCTTTCT
1 TTTCCT-TTCCTTTCT
91162493 TTTCCTTT
1 TTTCCTTT
91162501 ATTACTAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 7 0.33
16 14 0.67
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTCCTTTCCTTTCT
Found at i:91166828 original size:32 final size:32
Alignment explanation
Indices: 91166787--91166854 Score: 109
Period size: 32 Copynumber: 2.1 Consensus size: 32
91166777 TGTGTGGCGT
* *
91166787 TCTAAGCATTAGTCGAGCGTAAATAAAATGCA
1 TCTAAGCATTAGTCAAGCATAAATAAAATGCA
*
91166819 TCTAAGCATTATTCAAGCATAAATAAAATGCA
1 TCTAAGCATTAGTCAAGCATAAATAAAATGCA
91166851 TCTA
1 TCTA
91166855 CATATTTGCA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.43, C:0.16, G:0.13, T:0.28
Consensus pattern (32 bp):
TCTAAGCATTAGTCAAGCATAAATAAAATGCA
Found at i:91169228 original size:18 final size:19
Alignment explanation
Indices: 91169192--91169231 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
91169182 ATATTTTTTT
* *
91169192 AAAATATTAATTATTATAA
1 AAAATATTAAGTATGATAA
91169211 AAAATATT-AGTATGATAA
1 AAAATATTAAGTATGATAA
91169229 AAA
1 AAA
91169232 TAATTTCTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (19 bp):
AAAATATTAAGTATGATAA
Found at i:91180565 original size:8 final size:7
Alignment explanation
Indices: 91180529--91180562 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
91180519 TTAAATTAAA
91180529 AAAAAAG
1 AAAAAAG
91180536 AAAAAAG
1 AAAAAAG
91180543 AAAAAAG
1 AAAAAAG
91180550 AAAAAAG
1 AAAAAAG
91180557 AAAAAA
1 AAAAAA
91180563 AGACATATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:91180671 original size:34 final size:32
Alignment explanation
Indices: 91180630--91180698 Score: 111
Period size: 32 Copynumber: 2.2 Consensus size: 32
91180620 GTTTAGTGAT
*
91180630 TTTTGTGTGTGTTAATTGGAACACTTTTTCAA
1 TTTTATGTGTGTTAATTGGAACACTTTTTCAA
* *
91180662 TTTTATGTGTGTTAATTGGAATACTTTTTGAA
1 TTTTATGTGTGTTAATTGGAACACTTTTTCAA
91180694 TTTTA
1 TTTTA
91180699 CTTAAAGCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.23, C:0.06, G:0.17, T:0.54
Consensus pattern (32 bp):
TTTTATGTGTGTTAATTGGAACACTTTTTCAA
Found at i:91182376 original size:28 final size:28
Alignment explanation
Indices: 91182344--91182471 Score: 166
Period size: 28 Copynumber: 4.5 Consensus size: 28
91182334 ATAGTAAGTC
* *
91182344 CGCACACTTAGTGTTATATAATAAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
91182372 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
91182401 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
91182429 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
91182458 CGCACACTTAGTGC
1 CGCACACTTAGTGC
91182472 CAATCTCATG
Statistics
Matches: 88, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
28 44 0.50
29 44 0.50
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:91182403 original size:29 final size:29
Alignment explanation
Indices: 91182344--91182471 Score: 154
Period size: 29 Copynumber: 4.5 Consensus size: 29
91182334 ATAGTAAGTC
* *
91182344 CGCACACTTAGTG-TTATATAATAAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
91182372 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
91182401 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
* * * * *
91182429 TGCACACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCT-TACATAATCAAACT
91182458 CGCACACTTAGTGC
1 CGCACACTTAGTGC
91182472 CAATCTCATG
Statistics
Matches: 87, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
28 39 0.45
29 46 0.53
30 2 0.02
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCAAACT
Found at i:91182434 original size:57 final size:57
Alignment explanation
Indices: 91182343--91182471 Score: 179
Period size: 57 Copynumber: 2.3 Consensus size: 57
91182333 TATAGTAAGT
*
91182343 CCGCACACTTAGTGTTATATAATAAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATAAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * * *
91182400 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATAAAACTCGCACACTTAGTGCTATACAAATCAAAC
91182457 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
91182472 CAATCTCATG
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
57 60 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATAAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:91188908 original size:47 final size:47
Alignment explanation
Indices: 91188839--91188991 Score: 234
Period size: 47 Copynumber: 3.3 Consensus size: 47
91188829 AATCGCATAG
91188839 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
91188886 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * * * * *
91188933 ATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
91188980 AAATGTGATAAG
1 ATATGTGATAAG
91188992 TCCCGAAGGG
Statistics
Matches: 96, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 96 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.27
Consensus pattern (47 bp):
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:91189166 original size:37 final size:37
Alignment explanation
Indices: 91189110--91189188 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
91189100 CCGAGCTCTA
* * *
91189110 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
91189147 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
91189184 AAGAC
1 AAGAC
91189189 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:91191555 original size:11 final size:11
Alignment explanation
Indices: 91191524--91191562 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
91191514 ATTCCTAAGC
*
91191524 AAAAATAAATT
1 AAAAATTAATT
*
91191535 AATTAATTAATT
1 AA-AAATTAATT
91191547 AAAAATTAATT
1 AAAAATTAATT
91191558 AAAAA
1 AAAAA
91191563 AGAAAAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
11 15 0.62
12 9 0.38
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
AAAAATTAATT
Found at i:91191998 original size:17 final size:19
Alignment explanation
Indices: 91191976--91192011 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
91191966 TTTTAGAGAC
91191976 TAAA-TTGAAGGC-AAAAG
1 TAAATTTGAAGGCGAAAAG
91191993 TAAATTTGAAGGCGAAAAG
1 TAAATTTGAAGGCGAAAAG
91192012 CATGAATTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.24
18 8 0.47
19 5 0.29
ACGTcount: A:0.50, C:0.06, G:0.25, T:0.19
Consensus pattern (19 bp):
TAAATTTGAAGGCGAAAAG
Found at i:91192172 original size:13 final size:13
Alignment explanation
Indices: 91192144--91192178 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
91192134 ATTTAATGTT
*
91192144 TAATTATATTAGGA
1 TAATTAT-TGAGGA
91192158 TAATTATTGAGGA
1 TAATTATTGAGGA
91192171 TAATTATT
1 TAATTATT
91192179 TAGATTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 13 0.65
14 7 0.35
ACGTcount: A:0.40, C:0.00, G:0.14, T:0.46
Consensus pattern (13 bp):
TAATTATTGAGGA
Found at i:91192211 original size:10 final size:10
Alignment explanation
Indices: 91192196--91192237 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
91192186 AAATTTTAGG
91192196 ATTTATTTTT
1 ATTTATTTTT
*
91192206 ATTTATCTTT
1 ATTTATTTTT
*
91192216 ATTTATTTGT
1 ATTTATTTTT
91192226 ATTTATCTTTT
1 ATTTAT-TTTT
91192237 A
1 A
91192238 GAATTTAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
10 23 0.85
11 4 0.15
ACGTcount: A:0.21, C:0.05, G:0.02, T:0.71
Consensus pattern (10 bp):
ATTTATTTTT
Found at i:91192219 original size:20 final size:20
Alignment explanation
Indices: 91192196--91192235 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
91192186 AAATTTTAGG
*
91192196 ATTTATTTTTATTTATCTTT
1 ATTTATTTGTATTTATCTTT
91192216 ATTTATTTGTATTTATCTTT
1 ATTTATTTGTATTTATCTTT
91192236 TAGAATTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.20, C:0.05, G:0.03, T:0.72
Consensus pattern (20 bp):
ATTTATTTGTATTTATCTTT
Found at i:91192471 original size:21 final size:21
Alignment explanation
Indices: 91192445--91192487 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
91192435 CTAGCTGAAG
91192445 GTTGTCAAAATTCCCCAAAAA
1 GTTGTCAAAATTCCCCAAAAA
91192466 GTTGTCAAAATTCCCCAAAAA
1 GTTGTCAAAATTCCCCAAAAA
91192487 G
1 G
91192488 GTTCATGAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.42, C:0.23, G:0.12, T:0.23
Consensus pattern (21 bp):
GTTGTCAAAATTCCCCAAAAA
Found at i:91194875 original size:45 final size:45
Alignment explanation
Indices: 91194815--91194975 Score: 268
Period size: 45 Copynumber: 3.6 Consensus size: 45
91194805 GAAAAATGAT
91194815 TAAGACCATAGTTGAAAGACACTATGGCACTATACCGAAAATAAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCGAAAATAAA
* * *
91194860 TAAGACCATATTTGAATGACACTATGGCACTATACCAAAAATAAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCGAAAATAAA
* *
91194905 TAAGACCATAGTTGAAAGACACTATGACACTATACCGAAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCGAAAATAAA
*
91194950 TAAGACCATAGCTGAAAGACACTATG
1 TAAGACCATAGTTGAAAGACACTATG
91194976 ACATCTTGTT
Statistics
Matches: 107, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 107 1.00
ACGTcount: A:0.46, C:0.18, G:0.15, T:0.21
Consensus pattern (45 bp):
TAAGACCATAGTTGAAAGACACTATGGCACTATACCGAAAATAAA
Found at i:91194998 original size:45 final size:43
Alignment explanation
Indices: 91194815--91195000 Score: 169
Period size: 45 Copynumber: 4.1 Consensus size: 43
91194805 GAAAAATGAT
* * *
91194815 TAAGACCATAGTTGAAAGACACTATGGCACTATACCGAAAATAAA
1 TAAGACCATAGCTGAAAGACACTATGACACTATA-CG-AAATAGA
** * * * *
91194860 TAAGACCATATTTGAATGACACTATGGCACTATACCAAAAATAAA
1 TAAGACCATAGCTGAAAGACACTATGACACTATA-C-GAAATAGA
*
91194905 TAAGACCATAGTTGAAAGACACTATGACACTATACCGAAA-ATGAA
1 TAAGACCATAGCTGAAAGACACTATGACACTATA-CGAAATA-G-A
*
91194950 TAAGACCATAGCTGAAAGACACTATGACATCTTGTTA-GAAATAGA
1 TAAGACCATAGCTGAAAGACACTATGACA-C-T-ATACGAAATAGA
91194995 TAAGAC
1 TAAGAC
91195001 TATGGCTAAA
Statistics
Matches: 124, Mismatches: 10, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
45 110 0.89
46 6 0.05
47 2 0.02
48 2 0.02
ACGTcount: A:0.46, C:0.17, G:0.15, T:0.22
Consensus pattern (43 bp):
TAAGACCATAGCTGAAAGACACTATGACACTATACGAAATAGA
Found at i:91198423 original size:9 final size:8
Alignment explanation
Indices: 91198409--91198433 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
91198399 TTTTGGGAAG
91198409 AAAAAAAT
1 AAAAAAAT
91198417 AAAAAAAT
1 AAAAAAAT
91198425 AAAAAAAT
1 AAAAAAAT
91198433 A
1 A
91198434 TCCTAACTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAAAAAT
Found at i:91214527 original size:20 final size:18
Alignment explanation
Indices: 91214502--91214538 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
91214492 ATTGCTAAGT
91214502 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
91214522 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
91214539 TATGAGTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:91215915 original size:43 final size:43
Alignment explanation
Indices: 91215860--91216014 Score: 258
Period size: 43 Copynumber: 3.6 Consensus size: 43
91215850 AAGTTCGGTT
**
91215860 TAATGTAA-TGGCACTAAGTGTATGATATAATTATAGCTTCGGC
1 TAAT-TAATTGGCACTAAGTGTGCGATATAATTATAGCTTCGGC
*
91215903 TAATTAATTGGCACTAAGTGTGCGATATAATTATAGCTTTGGC
1 TAATTAATTGGCACTAAGTGTGCGATATAATTATAGCTTCGGC
*
91215946 TAATTAATTGGCACTAAGTGTGCGATACAATTATAGCTTCGGC
1 TAATTAATTGGCACTAAGTGTGCGATATAATTATAGCTTCGGC
91215989 TAATTAATTGGCACTAAGTGTGCGAT
1 TAATTAATTGGCACTAAGTGTGCGAT
91216015 GGCCAGGTAC
Statistics
Matches: 106, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
42 3 0.03
43 103 0.97
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.35
Consensus pattern (43 bp):
TAATTAATTGGCACTAAGTGTGCGATATAATTATAGCTTCGGC
Found at i:91218027 original size:20 final size:18
Alignment explanation
Indices: 91218002--91218038 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
91217992 ATTGCTAAGT
91218002 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
91218022 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
91218039 TATGAGTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:91226767 original size:30 final size:30
Alignment explanation
Indices: 91226733--91226793 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
91226723 TCCTTAACTC
91226733 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
91226763 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
91226793 A
1 A
91226794 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:91232701 original size:18 final size:19
Alignment explanation
Indices: 91232664--91232705 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
91232654 GTGATTAAGG
91232664 ATTAATTAAATAAGATTTA
1 ATTAATTAAATAAGATTTA
91232683 ATTAATT-AATAA-ATGTTA
1 ATTAATTAAATAAGAT-TTA
91232701 ATTAA
1 ATTAA
91232706 GTTTTAAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 2 0.09
18 13 0.59
19 7 0.32
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (19 bp):
ATTAATTAAATAAGATTTA
Found at i:91235754 original size:12 final size:12
Alignment explanation
Indices: 91235737--91235761 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
91235727 TTTTGAAAGT
91235737 TAGTTACACGTG
1 TAGTTACACGTG
91235749 TAGTTACACGTG
1 TAGTTACACGTG
91235761 T
1 T
91235762 CAAGTCCACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (12 bp):
TAGTTACACGTG
Found at i:91236813 original size:26 final size:26
Alignment explanation
Indices: 91236781--91236873 Score: 73
Period size: 27 Copynumber: 3.5 Consensus size: 26
91236771 CGTCAATACG
91236781 CTAGAAAATGGAACCTTTGTGGCAAT
1 CTAGAAAATGGAACCTTTGTGGCAAT
* * *
91236807 CTAGAAAATGAAAGCTTCTATGGCAAT
1 CTAGAAAATGGAACCTT-TGTGGCAAT
* * * *
91236834 ATATG-AAATGGAAGTCTTTGAGGCGAT
1 CTA-GAAAATGGAA-CCTTTGTGGCAAT
91236861 CTAAGAAAA-GGAA
1 CT-AGAAAATGGAA
91236874 AACCCATGTG
Statistics
Matches: 52, Mismatches: 10, Indels: 9
0.73 0.14 0.13
Matches are distributed among these distances:
26 15 0.29
27 29 0.56
28 8 0.15
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.25
Consensus pattern (26 bp):
CTAGAAAATGGAACCTTTGTGGCAAT
Found at i:91237057 original size:27 final size:26
Alignment explanation
Indices: 91237005--91237065 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
91236995 CTGATGAATT
* ** *
91237005 TTGAAGAGATAGTATGTGTGGTGAAC
1 TTGAAGGGATAGTATGAATGGCGAAC
91237031 ATTGAAGGGATAGTATGAATGGCGAAC
1 -TTGAAGGGATAGTATGAATGGCGAAC
91237058 TCTGAAGG
1 T-TGAAGG
91237066 AACGATAGGT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.03
27 28 0.97
ACGTcount: A:0.33, C:0.07, G:0.34, T:0.26
Consensus pattern (26 bp):
TTGAAGGGATAGTATGAATGGCGAAC
Found at i:91240082 original size:26 final size:25
Alignment explanation
Indices: 91240053--91240102 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
91240043 CGAATTTTCT
91240053 CAAAATTTTACTTC-GGATAAAATTGC
1 CAAAATTTTAC-TCAGG-TAAAATTGC
91240079 CAAAATTTTACTCAGGTAAAATTG
1 CAAAATTTTACTCAGGTAAAATTG
91240103 GTGTGAGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.34
Consensus pattern (25 bp):
CAAAATTTTACTCAGGTAAAATTGC
Found at i:91248011 original size:13 final size:13
Alignment explanation
Indices: 91247993--91248019 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
91247983 GTTCGGCAGG
91247993 GACACGCCCGTGT
1 GACACGCCCGTGT
91248006 GACACGCCCGTGT
1 GACACGCCCGTGT
91248019 G
1 G
91248020 CGATTACTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:91255814 original size:27 final size:27
Alignment explanation
Indices: 91255783--91255960 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
91255773 TAAATTGTAC
91255783 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
91255810 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
91255836 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
91255864 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
91255892 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
91255919 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
91255946 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
91255961 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:91255897 original size:82 final size:81
Alignment explanation
Indices: 91255784--91255939 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
91255774 AAATTGTACA
* *
91255784 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
91255848 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
91255865 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
91255930 TGCGAGTTGA
65 TGCGAATTGA
91255940 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:91255951 original size:82 final size:81
Alignment explanation
Indices: 91255780--91255960 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
91255770 GATTAAATTG
* *
91255780 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
91255845 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
91255861 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
91255925 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
91255943 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
91255961 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:91266487 original size:20 final size:20
Alignment explanation
Indices: 91266464--91266521 Score: 91
Period size: 20 Copynumber: 2.9 Consensus size: 20
91266454 TTAAATTCTA
91266464 AAAGATAAATACAA-ATAATT
1 AAAGATAAATA-AAGATAATT
*
91266484 AAAGATAATTAAAGATAATT
1 AAAGATAAATAAAGATAATT
91266504 AAAGATAAATAAAGATAA
1 AAAGATAAATAAAGATAA
91266522 AAGCTAAAAC
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 2 0.06
20 33 0.94
ACGTcount: A:0.66, C:0.02, G:0.09, T:0.24
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:91266491 original size:10 final size:10
Alignment explanation
Indices: 91266464--91266521 Score: 82
Period size: 10 Copynumber: 5.8 Consensus size: 10
91266454 TTAAATTCTA
*
91266464 AAAGATAAAT
1 AAAGATAATT
91266474 ACAA-ATAATT
1 A-AAGATAATT
91266484 AAAGATAATT
1 AAAGATAATT
91266494 AAAGATAATT
1 AAAGATAATT
*
91266504 AAAGATAAAT
1 AAAGATAATT
91266514 AAAGATAA
1 AAAGATAA
91266522 AAGCTAAAAC
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
9 2 0.05
10 40 0.91
11 2 0.05
ACGTcount: A:0.66, C:0.02, G:0.09, T:0.24
Consensus pattern (10 bp):
AAAGATAATT
Found at i:91275873 original size:32 final size:32
Alignment explanation
Indices: 91275837--91275897 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
91275827 GAGGTAAGTT
91275837 TGTATAATTAGAATCAAACTTTTAAATACCTA
1 TGTATAATTAGAATCAAACTTTTAAATACCTA
91275869 TGTATAATTAGAATCAAACTTTTAAATAC
1 TGTATAATTAGAATCAAACTTTTAAATAC
91275898 TTGTGTTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.44, C:0.11, G:0.07, T:0.38
Consensus pattern (32 bp):
TGTATAATTAGAATCAAACTTTTAAATACCTA
Found at i:91276133 original size:23 final size:23
Alignment explanation
Indices: 91276103--91276151 Score: 82
Period size: 23 Copynumber: 2.1 Consensus size: 23
91276093 AGCTTACCGA
91276103 TGTTTCAGCTC-ATCAGAGCTTAC
1 TGTTTCAGCTCAAT-AGAGCTTAC
91276126 TGTTTCAGCTCAATAGAGCTTAC
1 TGTTTCAGCTCAATAGAGCTTAC
91276149 TGT
1 TGT
91276152 CCATCAGCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 23 0.92
24 2 0.08
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.37
Consensus pattern (23 bp):
TGTTTCAGCTCAATAGAGCTTAC
Found at i:91276322 original size:26 final size:23
Alignment explanation
Indices: 91276293--91276348 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 23
91276283 TAGCTCGTAT
91276293 GAGCTTACCGATGTTTCAGCTC-ATCA
1 GAGCTTACC--TG-TTCAGCTCAAT-A
91276319 GAGCTTA-CTGTTCAGCTCAATA
1 GAGCTTACCTGTTCAGCTCAATA
91276341 GAGCTTAC
1 GAGCTTAC
91276349 TGTCCATCAG
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
22 16 0.57
23 4 0.14
25 1 0.04
26 7 0.25
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (23 bp):
GAGCTTACCTGTTCAGCTCAATA
Found at i:91276333 original size:22 final size:21
Alignment explanation
Indices: 91276307--91276374 Score: 73
Period size: 22 Copynumber: 2.9 Consensus size: 21
91276297 TTACCGATGT
91276307 TTCAGCTCATCAGAGCTTACTG
1 TTCAGCTCAT-AGAGCTTACTG
91276329 TTCAGCTCAATAGAGCTTACTG
1 TTCAGCTC-ATAGAGCTTACTG
91276351 TCCATCAGCTCATGAGGAGCTTAC
1 T---TCAGCTCAT-A-GAGCTTAC
91276375 CAATCATGGC
Statistics
Matches: 40, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
22 20 0.50
23 2 0.05
24 2 0.05
25 8 0.20
26 8 0.20
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.29
Consensus pattern (21 bp):
TTCAGCTCATAGAGCTTACTG
Found at i:91279772 original size:24 final size:24
Alignment explanation
Indices: 91279707--91279772 Score: 69
Period size: 25 Copynumber: 2.7 Consensus size: 24
91279697 CAAAAGAGTG
* *
91279707 TCCCATTAATAGCCCTTTTGAGCT
1 TCCCATTAATAGCTCTTGTGAGCT
* * *
91279731 TTCCATTATATGGTTCTTGTGAGCT
1 TCCCATTA-ATAGCTCTTGTGAGCT
*
91279756 TCCCGTTAATAGCTCTT
1 TCCCATTAATAGCTCTT
91279773 TGGAGCATCC
Statistics
Matches: 32, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
24 14 0.44
25 18 0.56
ACGTcount: A:0.18, C:0.24, G:0.15, T:0.42
Consensus pattern (24 bp):
TCCCATTAATAGCTCTTGTGAGCT
Found at i:91279778 original size:24 final size:24
Alignment explanation
Indices: 91279707--91279783 Score: 66
Period size: 24 Copynumber: 3.2 Consensus size: 24
91279697 CAAAAGAGTG
* *
91279707 TCCCATTAATAGCCCTTTTGAGCT
1 TCCCATTAATAGCTCTTTGGAGCT
* * *
91279731 TTCCATTATATGGTTC-TTGTGAGCT
1 TCCCATTA-ATAGCTCTTTG-GAGCT
* *
91279756 TCCCGTTAATAGCTCTTTGGAGCA
1 TCCCATTAATAGCTCTTTGGAGCT
91279780 TCCC
1 TCCC
91279784 GATTGGTTGT
Statistics
Matches: 40, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
24 22 0.55
25 18 0.45
ACGTcount: A:0.18, C:0.26, G:0.17, T:0.39
Consensus pattern (24 bp):
TCCCATTAATAGCTCTTTGGAGCT
Found at i:91279877 original size:26 final size:26
Alignment explanation
Indices: 91279848--91279903 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
91279838 CCCGCTTTAT
*
91279848 GGCTTTTCGTGAG-TTTCTCGATTAAA
1 GGCTTTTCGGGAGCTTTCT-GATTAAA
* *
91279874 GGCTTTTTGGGAGCTTTCTGATTAAT
1 GGCTTTTCGGGAGCTTTCTGATTAAA
91279900 GGCT
1 GGCT
91279904 CTCCGAAGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.16, C:0.14, G:0.27, T:0.43
Consensus pattern (26 bp):
GGCTTTTCGGGAGCTTTCTGATTAAA
Found at i:91283406 original size:39 final size:39
Alignment explanation
Indices: 91283352--91283489 Score: 186
Period size: 39 Copynumber: 3.5 Consensus size: 39
91283342 AACATGTTTT
91283352 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
* * * *
91283391 TGAGTGTTGTGATATATGCTTCAATGTTATATGGTTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
* * * *
91283430 TGTGTACTGTGGTATATGCTTGAATGTTATGCGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
* *
91283469 TGTGTAATGTGATATATGCTT
1 TGAGTATTGTGATATATGCTT
91283490 AAAAATGAAT
Statistics
Matches: 85, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 85 1.00
ACGTcount: A:0.25, C:0.05, G:0.24, T:0.46
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
Found at i:91287018 original size:46 final size:46
Alignment explanation
Indices: 91286951--91287218 Score: 210
Period size: 46 Copynumber: 5.8 Consensus size: 46
91286941 TGTAACCCGC
* * **
91286951 CCATAAGCGAACTCGGACTCAACTCAACGAAATCGGGCGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
91286997 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * * *
91287047 --TTCA-TGAACTCAGAATCAACTCAACGAGTTTGGACGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* * *
91287090 CCATAAGTGAACTTAGACTCAGCTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * **
91287140 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGAACGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
91287183 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGG
91287219 ATACCCAAAT
Statistics
Matches: 173, Mismatches: 31, Indels: 36
0.72 0.13 0.15
Matches are distributed among these distances:
42 6 0.03
43 6 0.03
44 3 0.02
45 4 0.02
46 83 0.48
47 51 0.29
48 5 0.03
49 3 0.02
50 6 0.03
51 6 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:91287072 original size:47 final size:46
Alignment explanation
Indices: 91287004--91287171 Score: 178
Period size: 47 Copynumber: 3.6 Consensus size: 46
91286994 CATCCATAAG
*
91287004 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCA
1 TGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACA-TTCA
* * * * * * * *
91287051 TGAACTCAGAATCAACTCAACGAGTTTGGACG-TTCGCATCCA-TAA
1 TGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAG-TTACATTCA
* *
91287096 GTGAACTTAGACTCAGCTCAACGAGTTCGGATGCCTAGTTACATCTCA
1 -TGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-TCA
*
91287144 CGAACTCAGACTCAACTCAACGAGTTCG
1 TGAACTCAGACTCAACTCAACGAGTTCG
91287172 AACGTTCGCA
Statistics
Matches: 94, Mismatches: 22, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
45 2 0.02
46 32 0.34
47 58 0.62
48 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (46 bp):
TGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTCA
Found at i:91287072 original size:93 final size:93
Alignment explanation
Indices: 91286958--91287220 Score: 409
Period size: 93 Copynumber: 2.8 Consensus size: 93
91286948 CGCCCATAAG
* ** *
91286958 CGAACTCGGACTCAACTCAACGAAATCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
91287023 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * * ** *
91287051 TGAACTCAGAATCAACTCAACGAGTTTGGACGTTCGCATCCATAAGTGAACTTAGACTCAGCTCA
1 CGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
91287116 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
91287144 CGAACTCAGACTCAACTCAACGAGTTCGAACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
91287209 ACGAGCTCGGAT
66 ACGAGTTCGGAT
91287221 ACCCAAATAT
Statistics
Matches: 151, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 151 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:91293227 original size:42 final size:42
Alignment explanation
Indices: 91293129--91293665 Score: 682
Period size: 42 Copynumber: 12.7 Consensus size: 42
91293119 AATGGGTACA
* * * * *
91293129 ATGCCGACGTCCCGGACGTGGTCTTACATGTAATTCAG-TATCG
1 ATGCCGATGTCCCAGACATGGTCTTACACG-AAATCAGATA-CG
** * * *
91293172 ATGCCTCTGTCCCAGACAGGGCCTTACACAAAATCAGATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
* * * *
91293214 ATACCGATGTCCCAGACATGGTCTTACATGAAATCAAAAACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
* * *
91293256 ATGTCGATGTCCCAGACATGGTTTTACACGAAATCAGATATG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
*
91293298 ATGCCGATGTCCCAGACATGGTCTTACACGAAATTAGATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
* *
91293340 ATGCCGATGTCCCAAACATGGTCTTACACGAAATCGGATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
* * *
91293382 ATGCCGATGTCCCAGACATTGTCTTACATGAAATTAGATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
* * *
91293424 ATGCCGATCTCCCAAACATGGCCTTACACGAAATCAGATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
*
91293466 ATGCCGATGTCCCAGACATGGTCTTACACGAAATGAGATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
* *
91293508 ATGCCGATGTCCCAGACATGGTCTTACAGGAAAACAGATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
* *
91293550 ATGCTGATGTCTCAGACATGGTCTTACACGAAATCAGATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
* * *
91293592 ATGCCAATGTCCCAGACATGGTCTTGCACGAAATCTCAAAT-CG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAA--TCAGATACG
* ** *
91293635 AGGCCTCTGTCCCAGACAAGGTCTTACACGA
1 ATGCCGATGTCCCAGACATGGTCTTACACGA
91293666 CATCTGAAAT
Statistics
Matches: 426, Mismatches: 65, Indels: 6
0.86 0.13 0.01
Matches are distributed among these distances:
42 370 0.87
43 51 0.12
44 5 0.01
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (42 bp):
ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
Found at i:91315404 original size:40 final size:40
Alignment explanation
Indices: 91315126--91315390 Score: 392
Period size: 40 Copynumber: 6.6 Consensus size: 40
91315116 GTGCCCATAT
* *
91315126 CCGGACTAAGATCCGAAGGCATTGGTGCGAGTTACTCA-AT
1 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT-ATAA
** * *
91315166 CCGGGTTAAG-TCCCGAGGGCATTTGTGCGAGTTCCTATAA
1 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTATAA
91315206 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTATAA
*
91315246 CCGGATTAAGATCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTATAA
*
91315286 CCGGATTAAGATCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTATAA
91315326 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTATAA
* *
91315366 CCGGGCTATG-TCCTGAAGGCATTTG
1 CCGGACTAAGATCC-GAAGGCATTTG
91315391 AACGAGTAGC
Statistics
Matches: 207, Mismatches: 14, Indels: 8
0.90 0.06 0.03
Matches are distributed among these distances:
39 5 0.02
40 201 0.97
41 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:91317446 original size:13 final size:15
Alignment explanation
Indices: 91317406--91317450 Score: 55
Period size: 13 Copynumber: 3.3 Consensus size: 15
91317396 GAAAAAAATT
91317406 ATTTT-TGGTATAT-
1 ATTTTATGGTATATG
91317419 -TTTTATGGTATATG
1 ATTTTATGGTATATG
91317433 ATTTTATGG-A-ATG
1 ATTTTATGGTATATG
91317446 ATTTT
1 ATTTT
91317451 GTTAAAATTC
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
12 4 0.14
13 16 0.55
14 1 0.03
15 8 0.28
ACGTcount: A:0.24, C:0.00, G:0.18, T:0.58
Consensus pattern (15 bp):
ATTTTATGGTATATG
Found at i:91318593 original size:42 final size:42
Alignment explanation
Indices: 91318546--91318643 Score: 142
Period size: 42 Copynumber: 2.3 Consensus size: 42
91318536 ACTGAGTGTA
* * * * *
91318546 CGTGTAAGAACATATCTGGGATATGGGATCGATATGAGATTT
1 CGTGTAAGACCATATCTGGGATATAGCATCAATAAGAGATTT
91318588 CGTGTAAGACCATATCTGGGATATAGCATCAATAAGAGATTT
1 CGTGTAAGACCATATCTGGGATATAGCATCAATAAGAGATTT
*
91318630 CATGTAAGACCATA
1 CGTGTAAGACCATA
91318644 ACTGAGTTAT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.29
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGATATAGCATCAATAAGAGATTT
Found at i:91318688 original size:40 final size:40
Alignment explanation
Indices: 91318638--91318718 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
91318628 TTCATGTAAG
*
91318638 ACCATAACTGAGTTATTGGCATCTATACGAGATTACGTGT
1 ACCATAACTGAGTTATTGGCATCTATACGAGATAACGTGT
91318678 ACCATAACTGAGTTATTGGCATCTATACGAGATAACGTGT
1 ACCATAACTGAGTTATTGGCATCTATACGAGATAACGTGT
91318718 A
1 A
91318719 AGAACATTTC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (40 bp):
ACCATAACTGAGTTATTGGCATCTATACGAGATAACGTGT
Found at i:91323966 original size:85 final size:85
Alignment explanation
Indices: 91323823--91324001 Score: 331
Period size: 85 Copynumber: 2.1 Consensus size: 85
91323813 GGCCGGCCAT
91323823 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATATTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATATTGGGGTAGTGCATTAT
91323888 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
91323908 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATATTGGGGTAGTGCATTAT
*
91323973 GTAAGGATTAATAAAGTAAA
66 GTAAGGATTAATAAAATAAA
*
91323993 GGGCATGGG
1 GAGCATGGG
91324002 CAATAAAATA
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 91 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATATTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:91326226 original size:47 final size:47
Alignment explanation
Indices: 91326175--91326563 Score: 526
Period size: 47 Copynumber: 8.1 Consensus size: 47
91326165 TTAGGATTTT
* *
91326175 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
91326222 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
** *
91326273 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C-----ATGCATATGTGTGATAAGGCCGAATGGCCA
* *
91326326 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGGCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
91326373 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
91326420 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
91326467 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
91326514 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
91326561 ATG
1 ATG
91326564 CGAAACGTGT
Statistics
Matches: 310, Mismatches: 25, Indels: 14
0.89 0.07 0.04
Matches are distributed among these distances:
47 217 0.70
49 1 0.00
50 2 0.01
51 43 0.14
52 1 0.00
53 46 0.15
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:91326626 original size:46 final size:46
Alignment explanation
Indices: 91326537--91326627 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
91326527 GAACATGAAT
* * * *
91326537 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
91326583 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
91326628 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:91326634 original size:141 final size:140
Alignment explanation
Indices: 91326175--91326612 Score: 443
Period size: 141 Copynumber: 3.0 Consensus size: 140
91326165 TTAGGATTTT
* * * * *
91326175 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * * * ***
91326240 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATATG
66 TG-A-ATATA--TGAGATAAGGCCGAATGGCCAATGCGA-GAACGTGAA-C-----ATGCGTATG
* * *
91326305 CGTGATAAGGCCGAATGGCCA
120 TGTGATAAAGCCAAATGGCCA
* * * *
91326326 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGGCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * * *
91326391 TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGG
66 TGAATATATGAGATAAGGCCGAATGGCCAATGCGA-GAACGTGAACATGCGTATGTGTGATAAAG
*
91326456 CCGAATGGCCA
130 CCAAATGGCCA
91326467 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * * *
91326532 TGAATATATGTGGTAAGGCCGAATGGCTAATGCGA-AACGTGTATGAGATG-GATATGTG-G-TA
66 TGAATATATGAGATAAGGCCGAATGGCCAATGCGAGAACGTG-A--ACATGCG-TATGTGTGATA
*
91326593 AAGCCAAATGGCTA
127 AAGCCAAATGGCCA
91326607 ATGTGA
1 ATGTGA
91326613 GATATGTACG
Statistics
Matches: 259, Mismatches: 24, Indels: 19
0.86 0.08 0.06
Matches are distributed among these distances:
139 5 0.02
140 20 0.08
141 119 0.46
142 10 0.04
146 1 0.00
147 36 0.14
149 5 0.02
151 63 0.24
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (140 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGAATATATGAGATAAGGCCGAATGGCCAATGCGAGAACGTGAACATGCGTATGTGTGATAAAGC
CAAATGGCCA
Found at i:91326919 original size:37 final size:37
Alignment explanation
Indices: 91326777--91326918 Score: 239
Period size: 37 Copynumber: 3.8 Consensus size: 37
91326767 AATATATTCT
91326777 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
91326814 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
* *
91326851 GGGTAAGACCCGATGACTACGCGTGGAGATTTTGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
* * *
91326888 GGGTAAGACCCGATAACTTCATGTGGAGATT
1 GGGTAAGACCCGATGACTACGTGTGGAGATT
91326919 TCGTCTGAGC
Statistics
Matches: 99, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
Found at i:91328456 original size:42 final size:42
Alignment explanation
Indices: 91328383--91328488 Score: 142
Period size: 42 Copynumber: 2.5 Consensus size: 42
91328373 TTAGGGTTAC
* *
91328383 AGAG-ATTACGTGTAAGGCCATATATGGGATATGGCATCGATA
1 AGAGAATT-CGTGTAAGACCATATATGCGATATGGCATCGATA
* *
91328425 TGAGAATTCGTGTAAGACCATATCTGCGATATGGCATCGATA
1 AGAGAATTCGTGTAAGACCATATATGCGATATGGCATCGATA
* *
91328467 AGAGATTTCATGTAAGACCATA
1 AGAGAATTCGTGTAAGACCATA
91328489 GCTGGCATAT
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 53 0.95
43 3 0.05
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (42 bp):
AGAGAATTCGTGTAAGACCATATATGCGATATGGCATCGATA
Found at i:91328523 original size:43 final size:41
Alignment explanation
Indices: 91328410--91328531 Score: 120
Period size: 42 Copynumber: 2.9 Consensus size: 41
91328400 CCATATATGG
* * *
91328410 GATATGGCATCGATATGAGAATTCGTGTAAGACCATATCTGC
1 GATATCGCATCGATATGAG-ATTCATGTAAGACCATAGCTGC
* *
91328452 GATATGGCATCGATAAGAGATTTCATGTAAGACCATAGCTG-
1 GATATCGCATCGATATGAGA-TTCATGTAAGACCATAGCTGC
* * *
91328493 GCATATTCGTATTGATATGAGATTACATGTAAGGCCATA
1 G-ATA-TCGCATCGATATGAGATT-CATGTAAGACCATA
91328532 TCTGATATAT
Statistics
Matches: 68, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
41 2 0.03
42 41 0.60
43 25 0.37
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.30
Consensus pattern (41 bp):
GATATCGCATCGATATGAGATTCATGTAAGACCATAGCTGC
Found at i:91331484 original size:39 final size:40
Alignment explanation
Indices: 91331327--91331495 Score: 243
Period size: 40 Copynumber: 4.2 Consensus size: 40
91331317 GCTACTCGTT
* *
91331327 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
91331367 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
91331407 CCAATGCCTTCAGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
91331447 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
91331486 CAAATGCCTT
1 CAAATGCCTT
91331496 TGGATCTTAG
Statistics
Matches: 119, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 31 0.26
40 86 0.72
41 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:91331535 original size:79 final size:79
Alignment explanation
Indices: 91331327--91331551 Score: 229
Period size: 80 Copynumber: 2.8 Consensus size: 79
91331317 GCTACTCGTT
* * * ** * *
91331327 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCAGGACTTAACCCGAATATAGTAACTAGCACAAA-GCCTTCGGGACTTAGCCCGG
*
91331392 ATTTAGTAACTCGCA
65 AATTAGTAACTCGCA
* * * * *
91331407 CCAATGCCTTCAGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCAGGACTTAACCCGAATATAGTAACTAGCA-CAAAGCCTTCGGGACTTAGCCCGG
*
91331471 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
* ** * *
91331486 CAAATGCCTT-TGGATCTTAGTCCGAATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCAGGA-CTTAACCCGAATATAGTAAC-TAGCACAAAGCCTTCGGGACTTAGCCCG
91331550 GA
64 GA
91331552 CATCATTCGA
Statistics
Matches: 121, Mismatches: 20, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
78 3 0.02
79 57 0.47
80 58 0.48
81 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCAGGACTTAACCCGAATATAGTAACTAGCACAAAGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:91331535 original size:119 final size:120
Alignment explanation
Indices: 91331329--91331551 Score: 265
Period size: 119 Copynumber: 1.9 Consensus size: 120
91331319 TACTCGTTCA
* *
91331329 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAAT
* * *
91331394 TTAGTAACTCGCACCAATGCCTTCAGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTAGCACCAAAGCCTTCAGGACTTAACCCGGATTTAGTAACTCGCACC
* * * **
91331449 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTT-TGGATCTTAGTCCGA
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGA
* * * *
91331511 ATATGGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAAC-TAGCACCAAAGCCTTCAGGACTTAACCCGGA
91331552 CATCATTCGA
Statistics
Matches: 86, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
118 4 0.05
119 66 0.77
120 16 0.19
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAAT
ATAGTAACTAGCACCAAAGCCTTCAGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:91332245 original size:56 final size:56
Alignment explanation
Indices: 91332173--91332400 Score: 402
Period size: 56 Copynumber: 4.1 Consensus size: 56
91332163 TATTAGTTTA
* *
91332173 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAAGATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
* * *
91332229 TTGCTCATGCTTCTTATTTTATTTTTCCTTTAACACAACAAGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
*
91332285 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACATAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
91332341 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
91332397 TTGC
1 TTGC
91332401 ACATCATCCC
Statistics
Matches: 162, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 162 1.00
ACGTcount: A:0.23, C:0.21, G:0.10, T:0.47
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:91335960 original size:96 final size:96
Alignment explanation
Indices: 91335796--91335986 Score: 339
Period size: 96 Copynumber: 2.0 Consensus size: 96
91335786 ATACTGTTCA
91335796 TATGAACGTTTCGTTACTTTCCTATGAAAATAGATTCATCAAGGTTCATTTGCATAATTTATTCA
1 TATGAACGTTTCGTTACTTTCCTATGAAAATAGATTCATCAAGGTTCATTTGCATAATTTATTCA
*
91335861 CTATTTAATTCC-ATTCTCACTATTTTTAGTT
66 CTATTTAATTCCAATCCT-ACTATTTTTAGTT
**
91335892 TATGAACGTTTCGTTACTTTCCTATGAAAATAGATTCATCAAGGTTTGTTTGCATAATTTATTCA
1 TATGAACGTTTCGTTACTTTCCTATGAAAATAGATTCATCAAGGTTCATTTGCATAATTTATTCA
91335957 CTATTTAATTCCAATCCTACTATTTTTAGT
66 CTATTTAATTCCAATCCTACTATTTTTAGT
91335987 GATTTTCCAA
Statistics
Matches: 91, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
96 87 0.96
97 4 0.04
ACGTcount: A:0.28, C:0.16, G:0.10, T:0.46
Consensus pattern (96 bp):
TATGAACGTTTCGTTACTTTCCTATGAAAATAGATTCATCAAGGTTCATTTGCATAATTTATTCA
CTATTTAATTCCAATCCTACTATTTTTAGTT
Found at i:91336523 original size:39 final size:40
Alignment explanation
Indices: 91336454--91336596 Score: 150
Period size: 40 Copynumber: 3.6 Consensus size: 40
91336444 NNNNNNCACA
* *
91336454 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
* *
91336494 AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
* * * *
91336533 AATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA-C
1 AATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCACC
*
91336573 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
91336597 CATCATTCGA
Statistics
Matches: 85, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
38 2 0.02
39 34 0.40
40 42 0.49
41 7 0.08
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
Found at i:91341749 original size:23 final size:23
Alignment explanation
Indices: 91341729--91341772 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
91341719 CATTCTATTA
91341729 TCATACCCATGCCATTACTATGT
1 TCATACCCATGCCATTACTATGT
* * *
91341752 TCATTCTCATGCTATTACTAT
1 TCATACCCATGCCATTACTAT
91341773 ACTAATGTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.25, C:0.27, G:0.07, T:0.41
Consensus pattern (23 bp):
TCATACCCATGCCATTACTATGT
Found at i:91350290 original size:73 final size:75
Alignment explanation
Indices: 91350169--91350316 Score: 282
Period size: 73 Copynumber: 2.0 Consensus size: 75
91350159 CACCACTGCT
91350169 GCTATCAGCTTCTGTTTTCAAAGTGAACCTTACCTAATTTGGGGTTTCATGGACCAACTAGGGCC
1 GCTATCAGCTTCTGTTTTCAAAGTGAACCTTACCTAATTTGGGGTTTCATGGACCAACTAGGGCC
91350234 TTGTCATACA
66 TTGTCATACA
91350244 GCTATCAGC-T-TGTTTTCAAAGTGAACCTTACCTAATTTGGGGTTTCATGGACCAACTAGGGCC
1 GCTATCAGCTTCTGTTTTCAAAGTGAACCTTACCTAATTTGGGGTTTCATGGACCAACTAGGGCC
91350307 TTGTCATACA
66 TTGTCATACA
91350317 TAAGCCCACA
Statistics
Matches: 73, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
73 63 0.86
74 1 0.01
75 9 0.12
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.33
Consensus pattern (75 bp):
GCTATCAGCTTCTGTTTTCAAAGTGAACCTTACCTAATTTGGGGTTTCATGGACCAACTAGGGCC
TTGTCATACA
Found at i:91351109 original size:40 final size:39
Alignment explanation
Indices: 91351011--91351233 Score: 241
Period size: 40 Copynumber: 5.6 Consensus size: 39
91351001 TCCTCGTTCA
* * * * *
91351011 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
91351050 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
91351089 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
91351129 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* * * * * *
91351169 AAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
91351210 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
91351234 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:91351233 original size:120 final size:119
Alignment explanation
Indices: 91351011--91351233 Score: 272
Period size: 120 Copynumber: 1.9 Consensus size: 119
91351001 TCCTCGTTCA
* * * *
91351011 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
* *
91351076 TAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66 TAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * *
91351130 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGA-CATAACCCGGA
* *
91351194 TATATTC-ACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 TATA-ACAAC-TAGCACGAAAGCCTTCGGGACTTAACCCGGA
91351234 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
119 37 0.43
120 44 0.51
121 6 0.07
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
TAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Done.