Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 276 of 322
Found at i:91689245 original size:48 final size:46
Alignment explanation
Indices: 91689147--91689417 Score: 209
Period size: 48 Copynumber: 5.8 Consensus size: 46
91689137 TTTGTGTAGC
* *
91689147 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATTA-TGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG---CATTAGAGAGAGCT
*
91689193 AGTGTAAGACCATGTCTGGGACATGGAATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATT-AGA-GAGAGCT
* * * * * *
91689241 AGTGTAAGA-CATGTTTGGGATA-AGTATCGG--TTACA-AGATGTGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAGAGAGA-G-CT
* *
91689284 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATAGAG-GTGCC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCA--T-TAGAGAGAGCT
* * * *
91689333 AGTGTAAGACCATGTCTAGGACATGGCATCAGCATAGATATGTGAGAGAT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT---TA-GAGAGAGCT
91689383 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
91689418 CATACCATAT
Statistics
Matches: 180, Mismatches: 25, Indels: 36
0.75 0.10 0.15
Matches are distributed among these distances:
41 3 0.02
42 1 0.01
43 3 0.02
44 11 0.06
45 15 0.08
46 23 0.13
47 25 0.14
48 56 0.31
49 2 0.01
50 37 0.21
51 4 0.02
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAGAGAGAGCT
Found at i:91691363 original size:31 final size:31
Alignment explanation
Indices: 91691325--91691387 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
91691315 AATAGTTTGT
*
91691325 TTCTTCATTTGGACTGCTCTAAAATAAAGAC
1 TTCTTCATTTGAACTGCTCTAAAATAAAGAC
91691356 TTCTTCATTTGAACTGCTCTAAAATAAAGAC
1 TTCTTCATTTGAACTGCTCTAAAATAAAGAC
91691387 T
1 T
91691388 CATTACAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (31 bp):
TTCTTCATTTGAACTGCTCTAAAATAAAGAC
Found at i:91692116 original size:21 final size:21
Alignment explanation
Indices: 91692090--91692133 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
91692080 TTTTCAAAGC
91692090 TGTACAGGTCAAATGCCCGTG
1 TGTACAGGTCAAATGCCCGTG
91692111 TGTACAGGTCAAATGCCCGTG
1 TGTACAGGTCAAATGCCCGTG
91692132 TG
1 TG
91692134 AACACACGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.25
Consensus pattern (21 bp):
TGTACAGGTCAAATGCCCGTG
Found at i:91693460 original size:42 final size:44
Alignment explanation
Indices: 91693389--91693492 Score: 108
Period size: 42 Copynumber: 2.4 Consensus size: 44
91693379 TCTTGCATGT
*
91693389 AATCAAATATCGATGCCACTGTCCTAGACAGGGTCTTACACG-A
1 AATCAAATATCGATGCCACTGTCCTAGACAGAGTCTTACACGTA
* * * *
91693432 AATCAAATA-CGATGCCGATTTTCC-AGACATAGTCTTACATGTA
1 AATCAAATATCGATGCC-ACTGTCCTAGACAGAGTCTTACACGTA
*
91693475 AATCATAA-GTCGATGCCA
1 AATCA-AATATCGATGCCA
91693493 ACATCCCAGA
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
42 21 0.41
43 21 0.41
44 9 0.18
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (44 bp):
AATCAAATATCGATGCCACTGTCCTAGACAGAGTCTTACACGTA
Found at i:91693478 original size:43 final size:42
Alignment explanation
Indices: 91693378--91693514 Score: 118
Period size: 43 Copynumber: 3.2 Consensus size: 42
91693368 CCTAGACGTG
* * **
91693378 GTCTTGCATGT-AATCAAATATCGATGCCACTGTCCTAGACAGG
1 GTCTTACATGTAAATCAAATA-CGATGCCACTTTCC-AGACATA
* *
91693421 GTCTTACACG-AAATCAAATACGATGCCGATTTTCCAGACATA
1 GTCTTACATGTAAATCAAATACGATGCC-ACTTTCCAGACATA
* * *
91693463 GTCTTACATGTAAATCATAAGT-CGATGCCAACATCCCAGACGTA
1 GTCTTACATGTAAATCA-AA-TACGATGCC-ACTTTCCAGACATA
91693507 GTCTTACA
1 GTCTTACA
91693515 CGAAAACACA
Statistics
Matches: 77, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
42 21 0.27
43 28 0.36
44 27 0.35
45 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (42 bp):
GTCTTACATGTAAATCAAATACGATGCCACTTTCCAGACATA
Found at i:91699220 original size:25 final size:25
Alignment explanation
Indices: 91699191--91699241 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
91699181 AAGAATAATT
*
91699191 TGAATATTTGATATTGCCTAATAAA
1 TGAATATCTGATATTGCCTAATAAA
* *
91699216 TGAATATCTGATATTGCTTAGTAAA
1 TGAATATCTGATATTGCCTAATAAA
91699241 T
1 T
91699242 CTCAAGCCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.37, C:0.08, G:0.14, T:0.41
Consensus pattern (25 bp):
TGAATATCTGATATTGCCTAATAAA
Found at i:91703221 original size:28 final size:30
Alignment explanation
Indices: 91703183--91703287 Score: 99
Period size: 31 Copynumber: 3.5 Consensus size: 30
91703173 GACTTAAAAT
91703183 ATAAAAAAAAAC-TT-AACAACTTAGTGAC
1 ATAAAAAAAAACTTTGAACAACTTAGTGAC
* * *
91703211 TTAAATAAAAACTTTTGAACAATTTAGTGAC
1 ATAAAAAAAAAC-TTTGAACAACTTAGTGAC
* *
91703242 ATAAACAAAAAATTTTGAAC-AGTTCAGTGAC
1 ATAAA-AAAAAACTTTGAACAACTT-AGTGAC
**
91703273 ATAAATGAAAACTTT
1 ATAAAAAAAAACTTT
91703288 CAAATAATTC
Statistics
Matches: 62, Mismatches: 10, Indels: 8
0.77 0.12 0.10
Matches are distributed among these distances:
28 10 0.16
30 12 0.19
31 35 0.56
32 5 0.08
ACGTcount: A:0.50, C:0.11, G:0.10, T:0.29
Consensus pattern (30 bp):
ATAAAAAAAAACTTTGAACAACTTAGTGAC
Found at i:91703232 original size:31 final size:31
Alignment explanation
Indices: 91703197--91703287 Score: 112
Period size: 31 Copynumber: 2.9 Consensus size: 31
91703187 AAAAAAACTT
*
91703197 AACAACTTAGTGACTTAAATAAAAACTTTTG
1 AACAACTTAGTGACATAAATAAAAACTTTTG
* * *
91703228 AACAATTTAGTGACATAAACAAAAAATTTTG
1 AACAACTTAGTGACATAAATAAAAACTTTTG
* *
91703259 AAC-AGTTCAGTGACATAAATGAAAACTTT
1 AACAACTT-AGTGACATAAATAAAAACTTT
91703288 CAAATAATTC
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
30 3 0.06
31 48 0.94
ACGTcount: A:0.47, C:0.12, G:0.11, T:0.30
Consensus pattern (31 bp):
AACAACTTAGTGACATAAATAAAAACTTTTG
Found at i:91709677 original size:178 final size:178
Alignment explanation
Indices: 91709372--91709728 Score: 705
Period size: 178 Copynumber: 2.0 Consensus size: 178
91709362 TACTTGATTC
*
91709372 AGGCTGCACCTTCCACATGAGTCCCAATCGGGATTGGTTTACAACTTACAAAATAGTGTCTGAAG
1 AGGCTACACCTTCCACATGAGTCCCAATCGGGATTGGTTTACAACTTACAAAATAGTGTCTGAAG
91709437 GTGTTGTTTTTATGGGAAATAATGCTTCGTGTAAAATAGCAAGTGTTGGAACAATTAAAGTTAAG
66 GTGTTGTTTTTATGGGAAATAATGCTTCGTGTAAAATAGCAAGTGTTGGAACAATTAAAGTTAAG
91709502 ATGTTTGATGGAGTTGTCAGAACATTTAGTGACGTACGACATGTTTCA
131 ATGTTTGATGGAGTTGTCAGAACATTTAGTGACGTACGACATGTTTCA
91709550 AGGCTACACCTTCCACATGAGTCCCAATCGGGATTGGTTTACAACTTACAAAATAGTGTCTGAAG
1 AGGCTACACCTTCCACATGAGTCCCAATCGGGATTGGTTTACAACTTACAAAATAGTGTCTGAAG
91709615 GTGTTGTTTTTATGGGAAATAATGCTTCGTGTAAAATAGCAAGTGTTGGAACAATTAAAGTTAAG
66 GTGTTGTTTTTATGGGAAATAATGCTTCGTGTAAAATAGCAAGTGTTGGAACAATTAAAGTTAAG
91709680 ATGTTTGATGGAGTTGTCAGAACATTTAGTGACGTACGACATGTTTCA
131 ATGTTTGATGGAGTTGTCAGAACATTTAGTGACGTACGACATGTTTCA
91709728 A
1 A
91709729 AATTGAAAAG
Statistics
Matches: 178, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
178 178 1.00
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (178 bp):
AGGCTACACCTTCCACATGAGTCCCAATCGGGATTGGTTTACAACTTACAAAATAGTGTCTGAAG
GTGTTGTTTTTATGGGAAATAATGCTTCGTGTAAAATAGCAAGTGTTGGAACAATTAAAGTTAAG
ATGTTTGATGGAGTTGTCAGAACATTTAGTGACGTACGACATGTTTCA
Found at i:91713170 original size:17 final size:18
Alignment explanation
Indices: 91713150--91713183 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
91713140 TTGTTTGCTA
*
91713150 TTTGCTGCAATT-TGTTG
1 TTTGCTACAATTCTGTTG
91713167 TTTGCTACAATTCTGTT
1 TTTGCTACAATTCTGTT
91713184 AATAATCGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.15, C:0.15, G:0.18, T:0.53
Consensus pattern (18 bp):
TTTGCTACAATTCTGTTG
Found at i:91715580 original size:379 final size:379
Alignment explanation
Indices: 91714881--91715639 Score: 1473
Period size: 379 Copynumber: 2.0 Consensus size: 379
91714871 CAAAAACAGC
91714881 TAATTTGAGTGTTGGAAATTGTAAATGTAAGAACCGGCAAAAATACCATACTAAATTAATTATAG
1 TAATTTGAGTGTTGGAAATTGTAAATGTAAGAACCGGCAAAAATACCATACTAAATTAATTATAG
**
91714946 ACATATATGTACCAAGACTTGTACTATAATTTGTTTGTTGTAATCCTAGTTTGTTCTTAAAAGAA
66 ACATATATAAACCAAGACTTGTACTATAATTTGTTTGTTGTAATCCTAGTTTGTTCTTAAAAGAA
*
91715011 GAATCCAAAGCAACTTCCTTCTGTTTTGGCCCTATGACAGATACAATTTTTTTTTCCTTCTTGTT
131 AAATCCAAAGCAACTTCCTTCTGTTTTGGCCCTATGACAGATACAATTTTTTTTTCCTTCTTGTT
91715076 TTTGCCAGTTGTATATAACACCAATATTATTATTTTCATGAAAAATTCTAATATAATGATGTGAT
196 TTTGCCAGTTGTATATAACACCAATATTATTATTTTCATGAAAAATTCTAATATAATGATGTGAT
91715141 TTAATTTTTGGTACAAAAATTTATAGGTTAATAGTTGATGTATTGATAGTTATATTTCTATATAT
261 TTAATTTTTGGTACAAAAATTTATAGGTTAATAGTTGATGTATTGATAGTTATATTTCTATATAT
*
91715206 TTATTTTAAAAAAATTTTAATAACATGTTATGATTCGATATATAAAATATATAA
326 TTATTTAAAAAAAATTTTAATAACATGTTATGATTCGATATATAAAATATATAA
*
91715260 TAATTTGAGTGTTGGAAATTGTAAATGTAAGAACCGGCAAAAATACCATATTAAATTAATTATAG
1 TAATTTGAGTGTTGGAAATTGTAAATGTAAGAACCGGCAAAAATACCATACTAAATTAATTATAG
91715325 ACATATATAAACCAAGACTTGTACTATAATTTGTTTGTTGTAATCCTAGTTTGTTCTTAAAAGAA
66 ACATATATAAACCAAGACTTGTACTATAATTTGTTTGTTGTAATCCTAGTTTGTTCTTAAAAGAA
91715390 AAATCCAAAGCAACTTCCTTCTGTTTTGGCCCTATGACAGATACAATTTTTTTTTCCTTCTTGTT
131 AAATCCAAAGCAACTTCCTTCTGTTTTGGCCCTATGACAGATACAATTTTTTTTTCCTTCTTGTT
91715455 TTTGCCAGTTGTATATAACACCAATATTATTATTTTCATGAAAAATTCTAATATAATGATGTGAT
196 TTTGCCAGTTGTATATAACACCAATATTATTATTTTCATGAAAAATTCTAATATAATGATGTGAT
91715520 TTAATTTTTGGTACAAAAATTTATAGGTTAATAGTTGATGTATTGATAGTTATATTTCTATATAT
261 TTAATTTTTGGTACAAAAATTTATAGGTTAATAGTTGATGTATTGATAGTTATATTTCTATATAT
91715585 TTATTTAAAAAAAATTTTAATAACATGTTATGATTCGATATATAAAATATATAA
326 TTATTTAAAAAAAATTTTAATAACATGTTATGATTCGATATATAAAATATATAA
91715639 T
1 T
91715640 TTTAAAAAAT
Statistics
Matches: 375, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
379 375 1.00
ACGTcount: A:0.36, C:0.10, G:0.12, T:0.41
Consensus pattern (379 bp):
TAATTTGAGTGTTGGAAATTGTAAATGTAAGAACCGGCAAAAATACCATACTAAATTAATTATAG
ACATATATAAACCAAGACTTGTACTATAATTTGTTTGTTGTAATCCTAGTTTGTTCTTAAAAGAA
AAATCCAAAGCAACTTCCTTCTGTTTTGGCCCTATGACAGATACAATTTTTTTTTCCTTCTTGTT
TTTGCCAGTTGTATATAACACCAATATTATTATTTTCATGAAAAATTCTAATATAATGATGTGAT
TTAATTTTTGGTACAAAAATTTATAGGTTAATAGTTGATGTATTGATAGTTATATTTCTATATAT
TTATTTAAAAAAAATTTTAATAACATGTTATGATTCGATATATAAAATATATAA
Found at i:91716229 original size:47 final size:45
Alignment explanation
Indices: 91716078--91716253 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 45
91716068 ACATCTCATA
* * * *
91716078 GCCGATGCATGTCCCAGACATGTCTTACACTGGATTACGTCCCGA-G
1 GCCGATGCATGTCCCAGACATGTCTTACACTAG-CT-CGTCTCAATG
91716124 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAAT-
1 GCCGATGCATGTCCCAGACATGTCTTACACTAG--CTCGTCTCAATG
* *
91716170 GCTGATGCCATGTCCCAGACATGGTCTTACATTAGCTC-TCAT-AATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCGTC-TCAA--TG
* *
91716218 GCCGATGCATGTCCCAGACATGTCATACAGTAGCTC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
91716254 ACACAAATGA
Statistics
Matches: 113, Mismatches: 9, Indels: 16
0.82 0.07 0.12
Matches are distributed among these distances:
45 4 0.04
46 61 0.54
47 31 0.27
48 17 0.15
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCGTCTCAATG
Found at i:91719477 original size:13 final size:13
Alignment explanation
Indices: 91719459--91719484 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
91719449 AATTCAAATT
91719459 TATTATTAGGATA
1 TATTATTAGGATA
91719472 TATTATTAGGATA
1 TATTATTAGGATA
91719485 GGATAATCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (13 bp):
TATTATTAGGATA
Found at i:91720555 original size:46 final size:46
Alignment explanation
Indices: 91720488--91720580 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
91720478 CTTCAGTTTT
91720488 AGCTTTTGGGGCTCTTTGGATTAAAAAATTAAAAACTAGGAAGGAA
1 AGCTTTTGGGGCTCTTTGGATTAAAAAATTAAAAACTAGGAAGGAA
*
91720534 AGCTTTTGGGTCTCTTTGGATTAAAAAATTAAAAACTAGGAAGGAA
1 AGCTTTTGGGGCTCTTTGGATTAAAAAATTAAAAACTAGGAAGGAA
91720580 A
1 A
91720581 TTGCTTCTCA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.29
Consensus pattern (46 bp):
AGCTTTTGGGGCTCTTTGGATTAAAAAATTAAAAACTAGGAAGGAA
Found at i:91721945 original size:21 final size:21
Alignment explanation
Indices: 91721870--91721935 Score: 78
Period size: 25 Copynumber: 3.0 Consensus size: 21
91721860 GTCTTGAATT
91721870 TGTTAGATATTGAATTTATTA
1 TGTTAGATATTGAATTTATTA
* *
91721891 TGTTTTAAGCTTGTTGAATTTATTA
1 TG--TT-AG-ATATTGAATTTATTA
91721916 TGTTAGATATTGAATTTATT
1 TGTTAGATATTGAATTTATT
91721936 TGGTTGGATA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
21 14 0.38
22 2 0.05
23 4 0.11
24 2 0.05
25 15 0.41
ACGTcount: A:0.29, C:0.02, G:0.15, T:0.55
Consensus pattern (21 bp):
TGTTAGATATTGAATTTATTA
Found at i:91723244 original size:28 final size:29
Alignment explanation
Indices: 91723197--91723266 Score: 108
Period size: 28 Copynumber: 2.5 Consensus size: 29
91723187 AAATCATTGC
*
91723197 AATATATGT-AAAAACAATTTAAAGTATA
1 AATATATGTAAAAAACAATTTAAAATATA
*
91723225 AATTTAT-TAAAAAACAATTTAAAATATA
1 AATATATGTAAAAAACAATTTAAAATATA
91723253 AATATATGTAAAAA
1 AATATATGTAAAAA
91723267 TAGCTTTTCT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
27 1 0.03
28 30 0.81
29 6 0.16
ACGTcount: A:0.60, C:0.03, G:0.04, T:0.33
Consensus pattern (29 bp):
AATATATGTAAAAAACAATTTAAAATATA
Found at i:91723402 original size:19 final size:18
Alignment explanation
Indices: 91723345--91723394 Score: 100
Period size: 18 Copynumber: 2.8 Consensus size: 18
91723335 AAACAGCAAA
91723345 AAAGTAAATCATTTCCAG
1 AAAGTAAATCATTTCCAG
91723363 AAAGTAAATCATTTCCAG
1 AAAGTAAATCATTTCCAG
91723381 AAAGTAAATCATTT
1 AAAGTAAATCATTT
91723395 TTCAGAAATC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.46, C:0.14, G:0.10, T:0.30
Consensus pattern (18 bp):
AAAGTAAATCATTTCCAG
Found at i:91723423 original size:14 final size:14
Alignment explanation
Indices: 91723386--91723416 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
91723376 TCCAGAAAGT
*
91723386 AAATCATTTTTCAG
1 AAATCATTTTCCAG
91723400 AAATCATTTTCCAG
1 AAATCATTTTCCAG
91723414 AAA
1 AAA
91723417 ATATTTTACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.42, C:0.16, G:0.06, T:0.35
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:91729462 original size:7 final size:7
Alignment explanation
Indices: 91729450--91729476 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
91729440 TATGTGAGGC
91729450 AAAAAAG
1 AAAAAAG
91729457 AAAAAAG
1 AAAAAAG
91729464 AAAAAAG
1 AAAAAAG
91729471 AAAAAA
1 AAAAAA
91729477 AAAGAGAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:91730264 original size:2 final size:2
Alignment explanation
Indices: 91730259--91730300 Score: 59
Period size: 2 Copynumber: 21.0 Consensus size: 2
91730249 TTTTTTGTAT
*
91730259 TC TC TC TC TC TC TC TC TC TC TC TC TC TC AC TC T- TGC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T-C TC TC TC
91730301 CATGATGCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
1 1 0.03
2 34 0.94
3 1 0.03
ACGTcount: A:0.02, C:0.48, G:0.02, T:0.48
Consensus pattern (2 bp):
TC
Found at i:91732016 original size:25 final size:26
Alignment explanation
Indices: 91731973--91732022 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
91731963 TTAATTTTTT
*
91731973 ATTTTATATTTTTTAATAGTGATTTG
1 ATTTTATATTTTTTAATAGTAATTTG
91731999 ATTTT-TAGTTTTTT-ATAGTAATTT
1 ATTTTATA-TTTTTTAATAGTAATTT
91732023 TGAATTTTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.26, C:0.00, G:0.10, T:0.64
Consensus pattern (26 bp):
ATTTTATATTTTTTAATAGTAATTTG
Found at i:91732024 original size:26 final size:26
Alignment explanation
Indices: 91731968--91732039 Score: 67
Period size: 26 Copynumber: 2.8 Consensus size: 26
91731958 GTTTGTTAAT
* *
91731968 TTTTTATTTTATA-TTTTTTAATAGTGA
1 TTTTGATTTT-TAGTTTTTT-ATAGTAA
91731995 -TTTGATTTTTAGTTTTTTATAGTAA
1 TTTTGATTTTTAGTTTTTTATAGTAA
* * *
91732020 TTTTGAATTTTGGGTTTTTA
1 TTTTGATTTTTAGTTTTTTA
91732040 GATTTATTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
25 8 0.21
26 30 0.79
ACGTcount: A:0.22, C:0.00, G:0.12, T:0.65
Consensus pattern (26 bp):
TTTTGATTTTTAGTTTTTTATAGTAA
Found at i:91751667 original size:27 final size:28
Alignment explanation
Indices: 91751583--91751680 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
91751573 CATGAGATTG
* * * *
91751583 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
91751612 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
91751640 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
91751667 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
91751681 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:91751691 original size:27 final size:27
Alignment explanation
Indices: 91751611--91751693 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
91751601 TAAATTGTAC
* *
91751611 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
91751639 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
91751666 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
91751693 A
1 A
91751694 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:91751694 original size:29 final size:27
Alignment explanation
Indices: 91751583--91751694 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
91751573 CATGAGATTG
** * *
91751583 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
91751612 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
91751640 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
91751667 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
91751695 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:91759772 original size:27 final size:28
Alignment explanation
Indices: 91759688--91759785 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
91759678 CATGAGATTG
* * * *
91759688 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
91759717 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
91759745 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
91759772 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
91759786 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:91759796 original size:27 final size:27
Alignment explanation
Indices: 91759716--91759798 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
91759706 TAAATTGTAC
* *
91759716 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
91759744 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
91759771 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
91759798 A
1 A
91759799 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:91759799 original size:29 final size:27
Alignment explanation
Indices: 91759688--91759799 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
91759678 CATGAGATTG
** * *
91759688 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
91759717 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
91759745 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
91759772 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
91759800 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:91768688 original size:49 final size:51
Alignment explanation
Indices: 91768624--91768766 Score: 155
Period size: 49 Copynumber: 2.8 Consensus size: 51
91768614 TATTGTGAGG
* ** **
91768624 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-TGTT-GG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTTCAA
* * * * *
91768673 TCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCTGATAACTTCAA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTTCAA
* * *
91768724 TCACGTGTGTAGTACTGAGTGCAGGCTACTACGTGTATCAGAT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
91768767 GGTTAGGTGC
Statistics
Matches: 74, Mismatches: 18, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
49 37 0.50
50 2 0.03
51 35 0.47
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (51 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTTCAA
Found at i:91773006 original size:31 final size:31
Alignment explanation
Indices: 91772958--91773041 Score: 93
Period size: 31 Copynumber: 2.7 Consensus size: 31
91772948 GATATTTTGA
91772958 TATTTTA-TAAT-TATTTAATTAGATAAATAT
1 TATTTTATTAATAT-TTTAATTAGATAAATAT
* **
91772988 TATTTTATTAATATTTTAATAAGATATTTAT
1 TATTTTATTAATATTTTAATTAGATAAATAT
*
91773019 TATTATTATTATTATTTT-ATTAG
1 TATT-TTATTAATATTTTAATTAG
91773042 TATATAAAGA
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
30 7 0.15
31 26 0.57
32 13 0.28
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (31 bp):
TATTTTATTAATATTTTAATTAGATAAATAT
Found at i:91775154 original size:46 final size:46
Alignment explanation
Indices: 91775087--91775406 Score: 408
Period size: 46 Copynumber: 7.0 Consensus size: 46
91775077 ACTTTCTGAA
* * * *
91775087 ATGAAATGTGTAAGACCATGGTTGAAAGATAACATGGAAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
91775133 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
91775179 ATGAAATGTGTAAGACCATGGTTGAAAGATAACATGGAAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
91775225 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
91775271 ATGAAAAGAATAAGACCATGGATGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * *
91775317 GGGAAATGAATAAGACCATGGTTGAAAGATACCACGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
91775363 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
91775407 TCGAAGATAA
Statistics
Matches: 248, Mismatches: 25, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.00
46 247 1.00
ACGTcount: A:0.43, C:0.13, G:0.24, T:0.20
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:91779306 original size:50 final size:50
Alignment explanation
Indices: 91779231--91779327 Score: 185
Period size: 50 Copynumber: 1.9 Consensus size: 50
91779221 CCATGGCAAC
*
91779231 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAACGA
1 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAACGA
91779281 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAA
1 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAA
91779328 TGGCAAGTAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.25
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAACGA
Found at i:91779375 original size:31 final size:31
Alignment explanation
Indices: 91779337--91779395 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
91779327 ATGGCAAGTA
91779337 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
91779368 AAAAGTGGTAGCTTCGGCTACCTGATCA
1 AAAAGTGGTAGCTTCGGCTACCTGATCA
91779396 TCGGCTACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAAGTGGTAGCTTCGGCTACCTGATCAATG
Found at i:91779403 original size:46 final size:46
Alignment explanation
Indices: 91779350--91779441 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
91779340 AGTGGTAGCT
* *
91779350 TCGGCTACCTGATCAATGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
* * *
91779396 TCGGCTACTTGATTAGTGAAAAATGGTAGCTCCGGCTACCTGATCA
1 TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
91779442 GTGAATATTG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (46 bp):
TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
Found at i:91779445 original size:31 final size:31
Alignment explanation
Indices: 91779397--91779465 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
91779387 ACCTGATCAT
* * *
91779397 CGGCTACTTGATTAGTGAAAAATGGTAGCTC
1 CGGCTACCTGATCAGTGAAAAATGATAGCTC
* * *
91779428 CGGCTACCTGATCAGTGAATATTGATAGCTT
1 CGGCTACCTGATCAGTGAAAAATGATAGCTC
91779459 CGGCTAC
1 CGGCTAC
91779466 AAGTGACAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (31 bp):
CGGCTACCTGATCAGTGAAAAATGATAGCTC
Found at i:91779623 original size:51 final size:51
Alignment explanation
Indices: 91779547--91779645 Score: 180
Period size: 51 Copynumber: 1.9 Consensus size: 51
91779537 AGACCATAGT
*
91779547 TGAGCTATGGCATTCTAGTGAAAAGACCATAGCTATGCTATGGCATCAAGC
1 TGAGCTATGGCATTCTAGTGAAAAGACCATAGCTATGATATGGCATCAAGC
*
91779598 TGAGCTATGGGATTCTAGTGAAAAGACCATAGCTATGATATGGCATCA
1 TGAGCTATGGCATTCTAGTGAAAAGACCATAGCTATGATATGGCATCA
91779646 GTGATTGTCA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.26
Consensus pattern (51 bp):
TGAGCTATGGCATTCTAGTGAAAAGACCATAGCTATGATATGGCATCAAGC
Found at i:91781806 original size:22 final size:21
Alignment explanation
Indices: 91781743--91781807 Score: 58
Period size: 22 Copynumber: 3.0 Consensus size: 21
91781733 CACTAAGTCA
*
91781743 ACAAGATGGCTCAACGCCGTAG
1 ACAAGATGGCT-AAAGCCGTAG
* * * *
91781765 ACAGGACGACTCAAAACCGTAG
1 ACAAGATGGCT-AAAGCCGTAG
91781787 ACAAGATGGCTAAAGGCCGTA
1 ACAAGATGGCTAAA-GCCGTA
91781808 AATATCACAG
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
21 3 0.09
22 30 0.91
ACGTcount: A:0.37, C:0.25, G:0.26, T:0.12
Consensus pattern (21 bp):
ACAAGATGGCTAAAGCCGTAG
Found at i:91789963 original size:46 final size:46
Alignment explanation
Indices: 91789896--91790169 Score: 343
Period size: 46 Copynumber: 6.0 Consensus size: 46
91789886 AGTGTGCTCT
* **
91789896 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* ** * *
91789942 CTGATATGAAATGTGTAAGACCGTGGTTGAAAGATACCATGACAAC
1 CTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
*
91789988 CTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAT
1 CTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* ** **
91790034 ATGACGGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGT
1 CTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* *
91790080 GTGACAAGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
91790126 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGACATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCA
91790170 TCATGTCAAA
Statistics
Matches: 205, Mismatches: 22, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
45 1 0.00
46 204 1.00
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:91790476 original size:16 final size:17
Alignment explanation
Indices: 91790455--91790487 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
91790445 ATGATGGTGC
91790455 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
91790471 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
91790488 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:91804274 original size:25 final size:24
Alignment explanation
Indices: 91804241--91804326 Score: 97
Period size: 25 Copynumber: 3.5 Consensus size: 24
91804231 GAATTGGTAT
*
91804241 GCTCTTACGAGCTAGAAATCAGAAA
1 GCTCATACGAGCTAGAAATCAG-AA
*
91804266 TCTCATACGAGCT-GAGAATCAGTAA
1 GCTCATACGAGCTAGA-AATCAG-AA
91804291 GCTC-TCACGAGCTA-AAATCAGAA
1 GCTCAT-ACGAGCTAGAAATCAGAA
91804314 GCTCATACGAGCT
1 GCTCATACGAGCT
91804327 GTGGTGTGTC
Statistics
Matches: 53, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
23 13 0.25
24 10 0.19
25 30 0.57
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.21
Consensus pattern (24 bp):
GCTCATACGAGCTAGAAATCAGAA
Found at i:91807841 original size:21 final size:22
Alignment explanation
Indices: 91807796--91807850 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
91807786 TGCAGGGCTC
*
91807796 ACACGCCCGTGTGGTCCAAGGG
1 ACACGCCCGTGTGGACCAAGGG
**
91807818 ACACGCCCGTGT-GACCGTGGG
1 ACACGCCCGTGTGGACCAAGGG
*
91807839 ACACGCTCGTGT
1 ACACGCCCGTGT
91807851 TGGAGGCCAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 17 0.59
22 12 0.41
ACGTcount: A:0.16, C:0.33, G:0.35, T:0.16
Consensus pattern (22 bp):
ACACGCCCGTGTGGACCAAGGG
Found at i:91808156 original size:41 final size:42
Alignment explanation
Indices: 91808111--91808191 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 42
91808101 TGTTACCATA
* * *
91808111 CCGTGTGTCACACACA-TCTAGGCACACACATTTGTGTCTGG
1 CCGTGTGTCACACACAGTCTAGACAAACACATGTGTGTCTGG
* *
91808152 CCGTGTGTCATACACAGTCTAGACAAACACCTGTGTGTCT
1 CCGTGTGTCACACACAGTCTAGACAAACACATGTGTGTCT
91808192 ACCTATATGG
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
41 15 0.44
42 19 0.56
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.27
Consensus pattern (42 bp):
CCGTGTGTCACACACAGTCTAGACAAACACATGTGTGTCTGG
Found at i:91809206 original size:58 final size:57
Alignment explanation
Indices: 91809060--91809206 Score: 163
Period size: 57 Copynumber: 2.6 Consensus size: 57
91809050 GTATAACAAG
* * *
91809060 ATTACCAGTCCAGGCTAAATCCTTTATATAACGTATGCTCAGAGGAGCTCGATTAGG
1 ATTACCAGTCCAGGCTAAATCCTTTATATAACGTATGCTCAGAGGAGCTAGATCAGA
* * * * *
91809117 ATTACTAGTCCAGGCTAAA-CCATAATCATAACGTATGCTCAAGAGGTA-TTATATCAGA
1 ATTACCAGTCCAGGCTAAATCCTTTAT-ATAACGTATGCTC-AGAGG-AGCTAGATCAGA
* *
91809175 ATTACCCGTCCGGGCTAAATCCTTTATATAAC
1 ATTACCAGTCCAGGCTAAATCCTTTATATAAC
91809207 AAGGTCAATG
Statistics
Matches: 73, Mismatches: 13, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
56 5 0.07
57 31 0.42
58 31 0.42
59 6 0.08
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.29
Consensus pattern (57 bp):
ATTACCAGTCCAGGCTAAATCCTTTATATAACGTATGCTCAGAGGAGCTAGATCAGA
Found at i:91809777 original size:20 final size:20
Alignment explanation
Indices: 91809748--91809792 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
91809738 AGCACATGTA
* *
91809748 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
91809768 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
91809788 TTCAT
1 TTCAT
91809793 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:91812807 original size:27 final size:27
Alignment explanation
Indices: 91812735--91812809 Score: 105
Period size: 27 Copynumber: 2.8 Consensus size: 27
91812725 GTGGCGTATT
* * **
91812735 TATGAAATGGAATCCTTTATGGCAATT
1 TATGAAATGGAAGCCTTTGTGGCAACC
*
91812762 TATTAAATGGAAGCCTTTGTGGCAACC
1 TATGAAATGGAAGCCTTTGTGGCAACC
91812789 TATGAAATGGAAGCCTTTGTG
1 TATGAAATGGAAGCCTTTGTG
91812810 AAGGAACACC
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.31, C:0.13, G:0.23, T:0.33
Consensus pattern (27 bp):
TATGAAATGGAAGCCTTTGTGGCAACC
Found at i:91820021 original size:29 final size:29
Alignment explanation
Indices: 91819989--91820047 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
91819979 GAGGTGGACT
91819989 ATGTTTAAATGTTCTAACCTTCATAATCC
1 ATGTTTAAATGTTCTAACCTTCATAATCC
*
91820018 ATGTTTAAATGTTGTAACCTTCATAATCC
1 ATGTTTAAATGTTCTAACCTTCATAATCC
91820047 A
1 A
91820048 GTCGTAACAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.32, C:0.19, G:0.08, T:0.41
Consensus pattern (29 bp):
ATGTTTAAATGTTCTAACCTTCATAATCC
Found at i:91820132 original size:27 final size:27
Alignment explanation
Indices: 91820109--91820187 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 27
91820099 AGGTATGGTA
91820109 AACTCTGAAAGAATAGTACATATGGAG
1 AACTCTGAAAGAATAGTACATATGGAG
* * ** *
91820136 AACTTTGAATGAATAGTATGTATGGCG
1 AACTCTGAAAGAATAGTACATATGGAG
* *
91820163 AACCCTGAGAGAAATAGTACCATAT
1 AACTCTGAAAG-AATAGTA-CATAT
91820188 AAAATATTGT
Statistics
Matches: 39, Mismatches: 11, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
27 29 0.74
28 7 0.18
29 3 0.08
ACGTcount: A:0.41, C:0.13, G:0.22, T:0.25
Consensus pattern (27 bp):
AACTCTGAAAGAATAGTACATATGGAG
Found at i:91827379 original size:13 final size:13
Alignment explanation
Indices: 91827364--91827410 Score: 76
Period size: 13 Copynumber: 3.6 Consensus size: 13
91827354 AACTTCCTTC
*
91827364 ATCTTCTTGTTTC
1 ATCTTCTTGTTTA
*
91827377 ATCTTCTTGGTTA
1 ATCTTCTTGTTTA
91827390 ATCTTCTTGTTTA
1 ATCTTCTTGTTTA
91827403 ATCTTCTT
1 ATCTTCTT
91827411 TGTTGCTCAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 31 1.00
ACGTcount: A:0.13, C:0.19, G:0.09, T:0.60
Consensus pattern (13 bp):
ATCTTCTTGTTTA
Found at i:91832064 original size:30 final size:30
Alignment explanation
Indices: 91832030--91832087 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
91832020 ATTTTCAGGC
* *
91832030 CTAGGGGTAAAATGGTCATTTTGCCAAAGT
1 CTAGGGGAAAAATGGTCATTTTACCAAAGT
*
91832060 CTAGGGGAAAAATGGTTATTTTACCAAA
1 CTAGGGGAAAAATGGTCATTTTACCAAA
91832088 TATATGAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.29
Consensus pattern (30 bp):
CTAGGGGAAAAATGGTCATTTTACCAAAGT
Found at i:91832578 original size:46 final size:44
Alignment explanation
Indices: 91832521--91832641 Score: 136
Period size: 46 Copynumber: 2.7 Consensus size: 44
91832511 AGACGAGTGC
* * *
91832521 TAGTGTAAGACATGTCTGGGACATGTATTAGCCT-CGAGATGTAAGT
1 TAGTGTAAGACATGTCCGGGACATGCATCAG-CTACGAGATGT--GT
* *
91832567 TAGTGTCAGACATGTCCGAGACATGCATCAGCTACGAGATGTGT
1 TAGTGTAAGACATGTCCGGGACATGCATCAGCTACGAGATGTGT
*
91832611 TAGTGTAAGACCATGCCCGGGACATGGCATC
1 TAGTGTAAGA-CATGTCCGGGACAT-GCATC
91832642 GGCACATATA
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
44 11 0.17
45 14 0.22
46 39 0.61
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (44 bp):
TAGTGTAAGACATGTCCGGGACATGCATCAGCTACGAGATGTGT
Found at i:91837369 original size:27 final size:27
Alignment explanation
Indices: 91837339--91837516 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
91837329 ATATTGAGCC
* * *
91837339 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAAAT
* * *
91837366 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
* *
91837393 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATCAAA-T
* ** ** *
91837421 CTCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAAAT
* **
91837448 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAAAT
*
91837475 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-AAT
91837502 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
91837517 GTACAATTTA
Statistics
Matches: 120, Mismatches: 26, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.80
28 22 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAAAT
Found at i:91847520 original size:14 final size:15
Alignment explanation
Indices: 91847490--91847523 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
91847480 CTGTTTAGGG
*
91847490 TTTCATTTCTATCCA
1 TTTCATTGCTATCCA
91847505 TTTCATTGCT-TCCA
1 TTTCATTGCTATCCA
91847519 TTTCA
1 TTTCA
91847524 CTTTTCTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.18, C:0.26, G:0.03, T:0.53
Consensus pattern (15 bp):
TTTCATTGCTATCCA
Found at i:91849257 original size:17 final size:17
Alignment explanation
Indices: 91849237--91849329 Score: 83
Period size: 17 Copynumber: 5.9 Consensus size: 17
91849227 TTATTTTCTA
91849237 TATAAGTTTTCTAAATT
1 TATAAGTTTTCTAAATT
91849254 TATAAGTTTTCT-AA--
1 TATAAGTTTTCTAAATT
*
91849268 -ATAATTTTTCTAAATT
1 TATAAGTTTTCTAAATT
* * *
91849284 TATTAGTATT-AAAATT
1 TATAAGTTTTCTAAATT
* *
91849300 TATCAG-TAT-TAAATT
1 TATAAGTTTTCTAAATT
91849315 TATAAGTTTTCTAAA
1 TATAAGTTTTCTAAA
91849330 AAAGTGTTCT
Statistics
Matches: 59, Mismatches: 11, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
13 10 0.17
14 2 0.03
15 11 0.19
16 14 0.24
17 22 0.37
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.51
Consensus pattern (17 bp):
TATAAGTTTTCTAAATT
Found at i:91849265 original size:30 final size:30
Alignment explanation
Indices: 91849230--91849347 Score: 107
Period size: 30 Copynumber: 3.9 Consensus size: 30
91849220 TATTGTTTTA
*
91849230 TTTTCTATATAAGTTTTCTAAATTTATAAG
1 TTTTCTAAATAAGTTTTCTAAATTTATAAG
* *
91849260 TTTTCTAAATAATTTTTCTAAATTTATTAG
1 TTTTCTAAATAAGTTTTCTAAATTTATAAG
* * *
91849290 TATT-AAAATTTATCAG-TAT-TAAATTTATAAG
1 TTTTCTAAA--TA--AGTTTTCTAAATTTATAAG
* *
91849321 TTTTCTAAAAAAGTGTTCTAAATTTAT
1 TTTTCTAAATAAGTTTTCTAAATTTAT
91849348 TATTAATAAA
Statistics
Matches: 68, Mismatches: 13, Indels: 14
0.72 0.14 0.15
Matches are distributed among these distances:
28 2 0.03
29 4 0.06
30 40 0.59
31 16 0.24
32 5 0.07
33 1 0.01
ACGTcount: A:0.37, C:0.06, G:0.06, T:0.51
Consensus pattern (30 bp):
TTTTCTAAATAAGTTTTCTAAATTTATAAG
Found at i:91849280 original size:13 final size:13
Alignment explanation
Indices: 91849230--91849282 Score: 52
Period size: 13 Copynumber: 3.8 Consensus size: 13
91849220 TATTGTTTTA
*
91849230 TTTTCTATATAAG
1 TTTTCTAAATAAG
91849243 TTTTCTAAATTTATAAG
1 TTTTCT-AA---ATAAG
*
91849260 TTTTCTAAATAAT
1 TTTTCTAAATAAG
91849273 TTTTCTAAAT
1 TTTTCTAAAT
91849283 TTATTAGTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
13 20 0.59
14 1 0.03
16 2 0.06
17 11 0.32
ACGTcount: A:0.34, C:0.08, G:0.04, T:0.55
Consensus pattern (13 bp):
TTTTCTAAATAAG
Found at i:91849313 original size:15 final size:15
Alignment explanation
Indices: 91849278--91849317 Score: 62
Period size: 16 Copynumber: 2.6 Consensus size: 15
91849268 ATAATTTTTC
*
91849278 TAAATTTATTAGTAT
1 TAAATTTATCAGTAT
91849293 TAAAATTTATCAGTAT
1 T-AAATTTATCAGTAT
91849309 TAAATTTAT
1 TAAATTTAT
91849318 AAGTTTTCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.39
16 14 0.61
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (15 bp):
TAAATTTATCAGTAT
Found at i:91849320 original size:61 final size:61
Alignment explanation
Indices: 91849248--91849395 Score: 215
Period size: 61 Copynumber: 2.4 Consensus size: 61
91849238 ATAAGTTTTC
* * *
91849248 TAAATTTATAAGTTTTCTAAATAATTTTTCTAAATTTATTAGTATTAAAATTTATCAGTAT
1 TAAATTTATAAGTTTTCTAAATAATTGTTCTAAATTTATTAGTAATAAAATTTATAAGTAT
* * *
91849309 TAAATTTATAAGTTTTCTAAAAAAGTGTTCTAAATTTATTATTAATAAAATTTATAAGTAT
1 TAAATTTATAAGTTTTCTAAATAATTGTTCTAAATTTATTAGTAATAAAATTTATAAGTAT
* * *
91849370 CAATTTTATAATTTTTCTAAATAATT
1 TAAATTTATAAGTTTTCTAAATAATT
91849396 ATATATTTTT
Statistics
Matches: 76, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
61 76 1.00
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (61 bp):
TAAATTTATAAGTTTTCTAAATAATTGTTCTAAATTTATTAGTAATAAAATTTATAAGTAT
Found at i:91849590 original size:21 final size:21
Alignment explanation
Indices: 91849564--91849640 Score: 68
Period size: 21 Copynumber: 3.7 Consensus size: 21
91849554 TAACATAATA
* *
91849564 CATAACTTATAT-ATAAGCTTG
1 CATAACTTACATAATAA-CTTC
91849585 CATAACTTACATAATAACTTC
1 CATAACTTACATAATAACTTC
** *
91849606 CATAACTTA-ATACACCACTTA
1 CATAACTTACATA-ATAACTTC
*
91849627 AATAACTTACATAA
1 CATAACTTACATAA
91849641 CTTACATAGC
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
20 3 0.06
21 37 0.79
22 7 0.15
ACGTcount: A:0.44, C:0.21, G:0.03, T:0.32
Consensus pattern (21 bp):
CATAACTTACATAATAACTTC
Found at i:91849640 original size:9 final size:9
Alignment explanation
Indices: 91849622--91850228 Score: 183
Period size: 9 Copynumber: 70.3 Consensus size: 9
91849612 TTAATACACC
*
91849622 ACTTAAATA
1 ACTTACATA
91849631 ACTTACATA
1 ACTTACATA
91849640 ACTTACATA
1 ACTTACATA
*
91849649 GCTTACATA
1 ACTTACATA
*
91849658 AC-T-CATT
1 ACTTACATA
91849665 ACTTACATA
1 ACTTACATA
*
91849674 ACATACATA
1 ACTTACATA
**
91849683 AAATAC--A
1 ACTTACATA
91849690 ACTTACATA
1 ACTTACATA
*
91849699 TCTTACATA
1 ACTTACATA
91849708 A--TACATA
1 ACTTACATA
*
91849715 ACTTACAGA
1 ACTTACATA
* *
91849724 AATTAAATA
1 ACTTACATA
* *
91849733 ACCTGCATA
1 ACTTACATA
*
91849742 A--AACATA
1 ACTTACATA
* *
91849749 GCCTACATA
1 ACTTACATA
*
91849758 ACTTATATA
1 ACTTACATA
* *
91849767 GCTTTCATA
1 ACTTACATA
**
91849776 AAGTAC--A
1 ACTTACATA
91849783 ACTTACATA
1 ACTTACATA
**
91849792 TTTTACATAAA
1 ACTTACAT--A
91849803 ACTTACATA
1 ACTTACATA
91849812 A--TACATA
1 ACTTACATA
*
91849819 ACTTAC-TT
1 ACTTACATA
**
91849827 ACATAATACAGC
1 AC-T--TACATA
*
91849839 ACTTACACA
1 ACTTACATA
*
91849848 ACTTAAATA
1 ACTTACATA
*
91849857 ACTTGCATA
1 ACTTACATA
91849866 A--TACATA
1 ACTTACATA
91849873 GAC-TACATA
1 -ACTTACATA
*
91849882 ACTTA-ATTTG
1 ACTTACA--TA
*
91849892 CCTTACATA
1 ACTTACATA
91849901 A--TACA-A
1 ACTTACATA
*
91849907 CACTTACACA
1 -ACTTACATA
*
91849917 ACTTAAATA
1 ACTTACATA
*
91849926 ACTTGCATA
1 ACTTACATA
91849935 A--TACATA
1 ACTTACATA
91849942 GAC-TACATA
1 -ACTTACATA
*
91849951 ACTTA-ATTTG
1 ACTTACA--TA
*
91849961 CCTTACATA
1 ACTTACATA
91849970 A--TACA-A
1 ACTTACATA
*
91849976 CACTTACACA
1 -ACTTACATA
*
91849986 ACTTAAATA
1 ACTTACATA
*
91849995 ACTTGCATA
1 ACTTACATA
91850004 A--TACATA
1 ACTTACATA
91850011 GAC-TACATA
1 -ACTTACATA
*
91850020 ACTTA-ATTTG
1 ACTTACA--TA
*
91850030 CCTTACATA
1 ACTTACATA
91850039 A--TACA-A
1 ACTTACATA
*
91850045 CACTTACACA
1 -ACTTACATA
*
91850055 ACTTAAATA
1 ACTTACATA
*
91850064 ACTTGCATA
1 ACTTACATA
91850073 A--TACATA
1 ACTTACATA
91850080 GAC-TACATA
1 -ACTTACATA
*
91850089 ACTTA-ATTTG
1 ACTTACA--TA
*
91850099 CCTTACATA
1 ACTTACATA
**
91850108 A--TACAGC
1 ACTTACATA
91850115 ACTTACATA
1 ACTTACATA
91850124 ACTTACATA
1 ACTTACATA
**
91850133 GGTTACATA
1 ACTTACATA
91850142 A--TACATA
1 ACTTACATA
*
91850149 ACTTAAATA
1 ACTTACATA
*
91850158 ACTTATATA
1 ACTTACATA
91850167 A--TACATA
1 ACTTACATA
91850174 ACTTACATA
1 ACTTACATA
* *
91850183 ATTTACTTA
1 ACTTACATA
91850192 A--TACATA
1 ACTTACATA
* *
91850199 A-ATATATA
1 ACTTACATA
* *
91850207 TCATATCATA
1 ACTTA-CATA
91850217 ACTTACATA
1 ACTTACATA
91850226 ACT
1 ACT
91850229 CATTTAATTT
Statistics
Matches: 437, Mismatches: 98, Indels: 126
0.66 0.15 0.19
Matches are distributed among these distances:
6 3 0.01
7 92 0.21
8 26 0.06
9 270 0.62
10 29 0.07
11 15 0.03
12 2 0.00
ACGTcount: A:0.45, C:0.20, G:0.04, T:0.32
Consensus pattern (9 bp):
ACTTACATA
Found at i:91849671 original size:16 final size:17
Alignment explanation
Indices: 91849622--91849721 Score: 73
Period size: 16 Copynumber: 5.9 Consensus size: 17
91849612 TTAATACACC
*
91849622 ACTTAAATAACTTACAT
1 ACTTACATAACTTACAT
*
91849639 AACTTACATAGCTTACAT
1 -ACTTACATAACTTACAT
*
91849657 AAC-T-CATTACTTACAT
1 -ACTTACATAACTTACAT
* **
91849673 AACATACATAAAATACA-
1 -ACTTACATAACTTACAT
*
91849690 ACTTACATATCTTACAT
1 ACTTACATAACTTACAT
*
91849707 A-ATACATAACTTACA
1 ACTTACATAACTTACA
91849722 GAAATTAAAT
Statistics
Matches: 66, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
16 37 0.56
17 3 0.05
18 26 0.39
ACGTcount: A:0.46, C:0.21, G:0.01, T:0.32
Consensus pattern (17 bp):
ACTTACATAACTTACAT
Found at i:91849717 original size:25 final size:25
Alignment explanation
Indices: 91849634--91849721 Score: 97
Period size: 25 Copynumber: 3.5 Consensus size: 25
91849624 TTAAATAACT
*
91849634 TACATAACTTACATAGCTTACATAA
1 TACATAACTTACATAACTTACATAA
* *
91849659 CT-CATTACTTACATAACATACATAA
1 -TACATAACTTACATAACTTACATAA
* * * *
91849684 AATACAACTTACATATCTTACATAA
1 TACATAACTTACATAACTTACATAA
91849709 TACATAACTTACA
1 TACATAACTTACA
91849722 GAAATTAAAT
Statistics
Matches: 49, Mismatches: 12, Indels: 3
0.77 0.19 0.05
Matches are distributed among these distances:
25 48 0.98
26 1 0.02
ACGTcount: A:0.45, C:0.22, G:0.01, T:0.32
Consensus pattern (25 bp):
TACATAACTTACATAACTTACATAA
Found at i:91849842 original size:20 final size:20
Alignment explanation
Indices: 91849803--91849844 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
91849793 TTTACATAAA
*
91849803 ACTTACATAATACATAACTT
1 ACTTACATAATACAGAACTT
*
91849823 ACTTACATAATACAGCACTT
1 ACTTACATAATACAGAACTT
91849843 AC
1 AC
91849845 ACAACTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.43, C:0.24, G:0.02, T:0.31
Consensus pattern (20 bp):
ACTTACATAATACAGAACTT
Found at i:91849905 original size:69 final size:69
Alignment explanation
Indices: 91849824--91850162 Score: 590
Period size: 69 Copynumber: 4.9 Consensus size: 69
91849814 ACATAACTTA
*
91849824 CTTACATAATACAGCACTTACACAACTTAAATAACTTGCATAATACATAGACTACATAACTTAAT
1 CTTACATAATACAACACTTACACAACTTAAATAACTTGCATAATACATAGACTACATAACTTAAT
91849889 TTGC
66 TTGC
91849893 CTTACATAATACAACACTTACACAACTTAAATAACTTGCATAATACATAGACTACATAACTTAAT
1 CTTACATAATACAACACTTACACAACTTAAATAACTTGCATAATACATAGACTACATAACTTAAT
91849958 TTGC
66 TTGC
91849962 CTTACATAATACAACACTTACACAACTTAAATAACTTGCATAATACATAGACTACATAACTTAAT
1 CTTACATAATACAACACTTACACAACTTAAATAACTTGCATAATACATAGACTACATAACTTAAT
91850027 TTGC
66 TTGC
91850031 CTTACATAATACAACACTTACACAACTTAAATAACTTGCATAATACATAGACTACATAACTTAAT
1 CTTACATAATACAACACTTACACAACTTAAATAACTTGCATAATACATAGACTACATAACTTAAT
91850096 TTGC
66 TTGC
* * * ** * *
91850100 CTTACATAATACAGCACTTACATAACTTACATAGGTTACATAATACATA-ACTTAAATAACTTA
1 CTTACATAATACAACACTTACACAACTTAAATAACTTGCATAATACATAGAC-TACATAACTTA
91850163 TATAATACAT
Statistics
Matches: 261, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
68 2 0.01
69 259 0.99
ACGTcount: A:0.43, C:0.21, G:0.05, T:0.31
Consensus pattern (69 bp):
CTTACATAATACAACACTTACACAACTTAAATAACTTGCATAATACATAGACTACATAACTTAAT
TTGC
Found at i:91850146 original size:25 final size:25
Alignment explanation
Indices: 91850118--91850199 Score: 110
Period size: 25 Copynumber: 3.3 Consensus size: 25
91850108 ATACAGCACT
**
91850118 TACATAACTTACATAGGTTACATAA
1 TACATAACTTACATAACTTACATAA
* *
91850143 TACATAACTTAAATAACTTATATAA
1 TACATAACTTACATAACTTACATAA
* *
91850168 TACATAACTTACATAATTTACTTAA
1 TACATAACTTACATAACTTACATAA
91850193 TACATAA
1 TACATAA
91850200 ATATATATCA
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 49 1.00
ACGTcount: A:0.48, C:0.15, G:0.02, T:0.35
Consensus pattern (25 bp):
TACATAACTTACATAACTTACATAA
Found at i:91855780 original size:66 final size:65
Alignment explanation
Indices: 91855673--91855842 Score: 225
Period size: 66 Copynumber: 2.6 Consensus size: 65
91855663 GAACAAATTA
* * * *
91855673 CACAACTTAAAACGGAGGCAGCATCGAGAGAAGCTGAGGTTCAA-AAAAGATATGAAGAACTCCA
1 CACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAG-TATGAAGAACTCCA
*
91855737 T
65 G
*
91855738 CTACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACGAAAGTATGAAGAACTCCA
1 C-ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATGAAGAACTCCA
91855803 G
65 G
* * * *
91855804 CGCAGCTTAAAGCAGATGCGGCAGCGAGAGAAGCAGAGG
1 CACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGG
91855843 CTGCAGTGAG
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
65 35 0.38
66 54 0.58
67 4 0.04
ACGTcount: A:0.39, C:0.19, G:0.28, T:0.14
Consensus pattern (65 bp):
CACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATGAAGAACTCCAG
Found at i:91855838 original size:21 final size:21
Alignment explanation
Indices: 91855813--91855883 Score: 97
Period size: 21 Copynumber: 3.4 Consensus size: 21
91855803 GCGCAGCTTA
* * *
91855813 AAGCAGATGCGGCAGCGAGAG
1 AAGCAGAGGCTGCAGCGAGGG
*
91855834 AAGCAGAGGCTGCAGTGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
*
91855855 AAGTAGAGGCTGCAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
91855876 AAGCAGAG
1 AAGCAGAG
91855884 CAGCGTAGAA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.32, C:0.15, G:0.45, T:0.07
Consensus pattern (21 bp):
AAGCAGAGGCTGCAGCGAGGG
Found at i:91856364 original size:86 final size:86
Alignment explanation
Indices: 91856214--91856393 Score: 208
Period size: 86 Copynumber: 2.1 Consensus size: 86
91856204 TTTTCAAAAA
*
91856214 CGCCACTAAAGGTCATGGTCATTTGCGGCGTTTGTAGAAAAAGCGTCGCTAAAGATCAGAGTCTT
1 CGCCGCTAAAGGTCATGGTCATTTGCGGCGTTTGTAGAAAAAGCGTCGCTAAAGATCAGAGTCTT
*
91856279 TAGCAGCGTTTGT-TTGGAAAG
66 TAGCAGCGTTTGTGGT-GAAAG
* * * * *
91856300 CGCCGCTAAAGGTCATTGTC-TTTAGTGGCGTTTTTCAG-ATAAGCGTTGCTAAA-AGTCATG-G
1 CGCCGCTAAAGGTCATGGTCATTT-GCGGCGTTTGT-AGAAAAAGCGTCGCTAAAGA-TCA-GAG
*
91856361 TCTTTAGCGGCGTTTGTGGTGAAAG
62 TCTTTAGCAGCGTTTGTGGTGAAAG
91856386 CGCCGCTA
1 CGCCGCTA
91856394 CAGTTAGCGA
Statistics
Matches: 81, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
85 4 0.05
86 73 0.90
87 4 0.05
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.30
Consensus pattern (86 bp):
CGCCGCTAAAGGTCATGGTCATTTGCGGCGTTTGTAGAAAAAGCGTCGCTAAAGATCAGAGTCTT
TAGCAGCGTTTGTGGTGAAAG
Found at i:91856387 original size:43 final size:42
Alignment explanation
Indices: 91856219--91856393 Score: 142
Period size: 43 Copynumber: 4.1 Consensus size: 42
91856209 AAAAACGCCA
* *
91856219 CTAAAGGTCATGGTCATTT-GCGGCGTTTGTAGAAAAAGCGTCG
1 CTAAAAGTCATGGTC-TTTAGCGGCGTTTGT-GAGAAAGCGTCG
* *
91856262 CT-AAAGATCA-GAGTCTTTAGCAGCGTTTGTTTG-GAAAGCGCCG
1 CTAAAAG-TCATG-GTCTTTAGCGGCGTTTG--TGAGAAAGCGTCG
* * * * * *
91856305 CTAAAGGTCATTGTCTTTAGTGGCGTTTTTCAGATAAGCGTTG
1 CTAAAAGTCATGGTCTTTAGCGGCGTTTGTGAGA-AAGCGTCG
* *
91856348 CTAAAAGTCATGGTCTTTAGCGGCGTTTGTGGTGAAAGCGCCG
1 CTAAAAGTCATGGTCTTTAGCGGCGTTTGT-GAGAAAGCGTCG
91856391 CTA
1 CTA
91856394 CAGTTAGCGA
Statistics
Matches: 102, Mismatches: 20, Indels: 20
0.72 0.14 0.14
Matches are distributed among these distances:
41 1 0.01
42 9 0.09
43 85 0.83
44 6 0.06
45 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (42 bp):
CTAAAAGTCATGGTCTTTAGCGGCGTTTGTGAGAAAGCGTCG
Found at i:91861214 original size:16 final size:16
Alignment explanation
Indices: 91861189--91861225 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
91861179 TAGTAATAAA
91861189 TACATAGATAAAATGT
1 TACATAGATAAAATGT
*
91861205 TACATGGATAAAATGT
1 TACATAGATAAAATGT
91861221 TACAT
1 TACAT
91861226 TTCATAATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.46, C:0.08, G:0.14, T:0.32
Consensus pattern (16 bp):
TACATAGATAAAATGT
Found at i:91862771 original size:52 final size:51
Alignment explanation
Indices: 91862693--91862796 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 51
91862683 CCTAATGTCA
91862693 TGGCCGGCCACTACTAGATGGGGGGGGAATTGACATGCAAGTCCCCCCTTTT
1 TGGCCGGCCACTACTAGATGGGGGGGGAATTGACATGCAAGT-CCCCCTTTT
91862745 TGGCCGGCCACTACTAGATGGGGGGGGAATTGACATGCAAGTCCCCCTTTT
1 TGGCCGGCCACTACTAGATGGGGGGGGAATTGACATGCAAGTCCCCCTTTT
91862796 T
1 T
91862797 CAGCATGCAC
Statistics
Matches: 52, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
51 10 0.19
52 42 0.81
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (51 bp):
TGGCCGGCCACTACTAGATGGGGGGGGAATTGACATGCAAGTCCCCCTTTT
Found at i:91864307 original size:40 final size:40
Alignment explanation
Indices: 91864125--91864307 Score: 190
Period size: 40 Copynumber: 4.6 Consensus size: 40
91864115 CCAGCATGAT
* * * * *
91864125 TGCTCTTTGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
*** *
91864165 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
* *
91864205 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
* * *
91864245 TGCTCTTCGAAACTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGAACTTAGCCCGGATAT-ATCAC-TAGCACGAA
* *
91864286 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGAACTTAGCCCGGA
91864308 CATCATTCAA
Statistics
Matches: 121, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
40 107 0.88
41 8 0.07
42 6 0.05
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
Found at i:91864658 original size:29 final size:29
Alignment explanation
Indices: 91864619--91864697 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
91864609 CTTAATAATC
*
91864619 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
91864649 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
91864678 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
91864698 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:91865019 original size:46 final size:47
Alignment explanation
Indices: 91864927--91865021 Score: 174
Period size: 47 Copynumber: 2.0 Consensus size: 47
91864917 TTATAGTCAT
*
91864927 AACACTCTTTCAAAATTGCATCACTTATACCCTTATAATTCAATCCA
1 AACACTCTTTCAAAATTGCATCACTTATACCCCTATAATTCAATCCA
91864974 AACACTCTTTCAAAATTGCATCAC-TATACCCCTATAATTCAATCCA
1 AACACTCTTTCAAAATTGCATCACTTATACCCCTATAATTCAATCCA
91865020 AA
1 AA
91865022 TCGAAATTCA
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
46 23 0.49
47 24 0.51
ACGTcount: A:0.38, C:0.28, G:0.02, T:0.32
Consensus pattern (47 bp):
AACACTCTTTCAAAATTGCATCACTTATACCCCTATAATTCAATCCA
Found at i:91866097 original size:37 final size:37
Alignment explanation
Indices: 91866047--91866125 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
91866037 TTATTACGAA
* *
91866047 GTCTTACCCGGACATAA-TCTCCACAAGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACAAGAAGTCATCGG
* *
91866084 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACAAGAAGTCATCGG
91866121 GTCTT
1 GTCTT
91866126 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACAAGAAGTCATCGG
Found at i:91866322 original size:47 final size:47
Alignment explanation
Indices: 91866244--91866576 Score: 585
Period size: 47 Copynumber: 7.1 Consensus size: 47
91866234 CCCTTCGGGA
* * * * * * *
91866244 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
91866291 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91866338 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91866385 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91866432 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91866479 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91866526 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91866573 CTTA
1 CTTA
91866577 CTATCATTTC
Statistics
Matches: 275, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 275 1.00
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:91872717 original size:39 final size:39
Alignment explanation
Indices: 91872594--91872733 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 39
91872584 TGAATGCTGT
* * * * *
91872594 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGT-ATGAGTTACTATAA
* **
91872634 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTA-T-TAA
1 CCGGGCTAAG-TCCCGAAGGCA-TTGTATGAGTTACTATAA
*
91872672 TTCCGGGTTAAGTCCCGAAGGCATTGTATGAGTTACTATAA
1 --CCGGGCTAAGTCCCGAAGGCATTGTATGAGTTACTATAA
*
91872713 CCGGGCTATGTCCCGAAGGCA
1 CCGGGCTAAGTCCCGAAGGCA
91872734 CTTGAACGAG
Statistics
Matches: 80, Mismatches: 13, Indels: 15
0.74 0.12 0.14
Matches are distributed among these distances:
38 2 0.03
39 31 0.39
40 39 0.49
41 8 0.10
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTGTATGAGTTACTATAA
Found at i:91880580 original size:39 final size:41
Alignment explanation
Indices: 91880485--91880668 Score: 208
Period size: 40 Copynumber: 4.6 Consensus size: 41
91880475 TTGAATGATG
*
91880485 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATA
*
91880524 TCCGGACTAAGAT-CCGAAGGCATTTGTGCG-AGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TACTAATA
91880564 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATA
* *
91880603 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
* *
91880643 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
91880669 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 9, Indels: 19
0.82 0.06 0.12
Matches are distributed among these distances:
39 54 0.43
40 61 0.48
41 11 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
Found at i:91880620 original size:79 final size:81
Alignment explanation
Indices: 91880485--91880668 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 81
91880475 TTGAATGATG
91880485 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
91880548 TGTGCGAGA-TACTA-A
66 TGTGCGA-ATTACTATA
* * **
91880563 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
91880624 ATTTGTGCGAATTACTATA
63 ATTTGTGCGAATTACTATA
* *
91880643 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
91880669 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
78 11 0.12
79 58 0.63
80 23 0.25
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
TGTGCGAATTACTATA
Found at i:91880690 original size:79 final size:79
Alignment explanation
Indices: 91880537--91880701 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 79
91880527 GGACTAAGAT
* ** *
91880537 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
91880602 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
*
91880616 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
91880678 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
91880695 CCGAAGG
1 CCGAAGG
91880702 TACGTGATTT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
78 3 0.04
79 46 0.62
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:91882815 original size:26 final size:25
Alignment explanation
Indices: 91882787--91882858 Score: 108
Period size: 26 Copynumber: 2.8 Consensus size: 25
91882777 AGGAAGTGCA
*
91882787 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
91882812 AAAAGGGCTTTTGCCCCAGTTTACCG
1 AAAAGGGC-TTTGCCCCAGTTTACCG
*
91882838 AAAAGGGTTTTTGCCCCAGTT
1 AAAAGGG-CTTTGCCCCAGTT
91882859 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
25 8 0.19
26 35 0.81
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:91889550 original size:39 final size:40
Alignment explanation
Indices: 91889455--91889677 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
91889445 TTGAATGATG
*
91889455 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
91889493 ATCAGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
91889534 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
91889573 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
91889612 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
91889651 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
91889678 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 13, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
39 92 0.57
40 58 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:91889649 original size:79 final size:81
Alignment explanation
Indices: 91889455--91889677 Score: 273
Period size: 79 Copynumber: 2.8 Consensus size: 81
91889445 TTGAATGATG
* * * * *
91889455 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCAGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TTACTAATATCCGGGCTAAGACCCGAAGGCAT
*
91889517 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
91889534 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-ATTACTAATATCCGGGCTAAGACCCGAAGGCAT
*
91889595 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
* * * *
91889612 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAATATCCGGGCTAAGACCCGAAGGCATT
91889676 TG
66 TG
91889678 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 10, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 47 0.37
79 54 0.43
80 24 0.19
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:91889699 original size:79 final size:78
Alignment explanation
Indices: 91889507--91889700 Score: 209
Period size: 79 Copynumber: 2.5 Consensus size: 78
91889497 GGACTAAGAT
** * *
91889507 CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGCCCGAAGGCATTTGTGCGAGATACTA
*
91889571 ATTCCGGGCTAAGC
65 ATACCGGGCTAAGC
** *
91889585 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT
1 CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAG-CCCGAAGGCATTTGTGCGAGA-TACT
*
91889649 -ATAACCGGGCTATGTC
64 AAT-ACCGGGCTAAG-C
*
91889665 CCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAA
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAA
91889701 ATTTCGAAGG
Statistics
Matches: 102, Mismatches: 8, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
77 1 0.01
78 37 0.36
79 39 0.38
80 25 0.25
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGCCCGAAGGCATTTGTGCGAGATACTAA
TACCGGGCTAAGC
Found at i:91897589 original size:39 final size:40
Alignment explanation
Indices: 91897484--91897706 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
91897474 TTGAATGATG
*
91897484 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
91897522 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
*
91897563 TCCGGGCTAAG-CCCGAGGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
91897602 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
91897641 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
91897680 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
91897707 AACAAGGAGC
Statistics
Matches: 162, Mismatches: 13, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
39 91 0.56
40 59 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:91897629 original size:78 final size:80
Alignment explanation
Indices: 91897484--91897706 Score: 262
Period size: 79 Copynumber: 2.8 Consensus size: 80
91897474 TTGAATGATG
* * * * *
91897484 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
91897546 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
* *
91897563 TCCGGGCTAAG-CCCGAGGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATA-ACCGGGCTAAGTCCCGAAGGCAT
*
91897624 TTGTGCGAGTTACTAAA
64 TTGTGCGAGATACTAAA
* *
91897641 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
91897706 G
66 G
91897707 AACAAGGAGC
Statistics
Matches: 124, Mismatches: 11, Indels: 17
0.82 0.07 0.11
Matches are distributed among these distances:
78 45 0.36
79 56 0.45
80 22 0.18
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:91897728 original size:79 final size:79
Alignment explanation
Indices: 91897484--91897739 Score: 190
Period size: 79 Copynumber: 3.3 Consensus size: 79
91897474 TTGAATGATG
* * * *
91897484 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** * *
91897545 TTTGTGCGAGAT-ACTAAT
62 TTTGAACAAG-TGACTAAA
* * *
91897563 TCCGGGCTAAG-CCCGAGGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** * *
91897627 TGCGAGTTACTAAA
66 AACAAGTGACTAAA
*
91897641 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
91897704 TTGAACAAG-GAGCTATA
63 TTGAACAAGTGA-CTAAA
* *
91897721 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
91897740 TACGTGATTT
Statistics
Matches: 150, Mismatches: 17, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
77 1 0.01
78 45 0.30
79 68 0.45
80 35 0.23
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACAAGTGACTAAA
Found at i:91901561 original size:20 final size:20
Alignment explanation
Indices: 91901536--91901602 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
91901526 ATTTTGATAT
91901536 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
91901556 ACATGATATGTACGATA-GAC
1 ACATGATATGTATGATATG-C
91901576 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
91901596 ACATGAT
1 ACATGAT
91901603 GTATTCATAA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
19 1 0.02
20 41 0.95
21 1 0.02
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:91901563 original size:11 final size:11
Alignment explanation
Indices: 91901547--91901602 Score: 50
Period size: 11 Copynumber: 5.5 Consensus size: 11
91901537 CATGATATGT
91901547 ATGATATGCAC
1 ATGATATGCAC
*
91901558 ATGATATGTAC
1 ATGATATGCAC
91901569 --GATA-GACAC
1 ATGATATG-CAC
*
91901578 ATGATATG--T
1 ATGATATGCAC
91901587 ATGATATGCAC
1 ATGATATGCAC
91901598 ATGAT
1 ATGAT
91901603 GTATTCATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 12
0.69 0.08 0.24
Matches are distributed among these distances:
8 1 0.03
9 14 0.40
11 19 0.54
12 1 0.03
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:91901735 original size:24 final size:24
Alignment explanation
Indices: 91901653--91901722 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 24
91901643 AGGAAGTGCA
91901653 AAAAGGG-TTATGCCCCAGTTTATC
1 AAAAGGGCTT-TGCCCCAGTTTATC
91901677 GAAAAGGGCTTTTGCCCCAGTTTATC
1 -AAAAGGGC-TTTGCCCCAGTTTATC
91901703 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
91901723 ATTATAAAAG
Statistics
Matches: 43, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
24 12 0.28
25 15 0.35
26 14 0.33
27 2 0.05
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:91901981 original size:31 final size:35
Alignment explanation
Indices: 91901945--91902025 Score: 107
Period size: 38 Copynumber: 2.3 Consensus size: 35
91901935 ATTTACAGTG
91901945 AAGGCTTCGGCCCA-G-T-A-ATATGAAATATGAA
1 AAGGCTTCGGCCCAGGTTGAGATATGAAATATGAA
91901976 AAGGCTTCGGCCCAGTGTTATGAGATATGAAATATGAA
1 AAGGCTTCGGCCCAG-G-T-TGAGATATGAAATATGAA
91902014 AAGGCTTCGGCC
1 AAGGCTTCGGCC
91902026 TGTATATGCT
Statistics
Matches: 43, Mismatches: 0, Indels: 7
0.86 0.00 0.14
Matches are distributed among these distances:
31 14 0.33
33 1 0.02
36 1 0.02
37 1 0.02
38 26 0.60
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.23
Consensus pattern (35 bp):
AAGGCTTCGGCCCAGGTTGAGATATGAAATATGAA
Found at i:91904589 original size:49 final size:49
Alignment explanation
Indices: 91904517--91904693 Score: 248
Period size: 49 Copynumber: 3.6 Consensus size: 49
91904507 TGAGGTCACG
91904517 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTTGCA
* ** * * *
91904566 TGTGTAGTACTAAGTGCTGGCTACTATGCATACCCGATAACTTCGAT-CA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAA-TTGGTTGCA
* *
91904615 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 --TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTTGCA
91904666 TGTGTAGTACTAAGTGCAGGCTACTATG
1 TGTGTAGTACTAAGTGCAGGCTACTATG
91904694 CGTATTAGAT
Statistics
Matches: 109, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
49 65 0.60
50 7 0.06
51 37 0.34
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTTGCA
Found at i:91904688 original size:100 final size:100
Alignment explanation
Indices: 91904512--91904694 Score: 339
Period size: 100 Copynumber: 1.8 Consensus size: 100
91904502 TATTGTGAGG
* *
91904512 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTTGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
*
91904577 AAGTGCTGGCTACTATGCATACCCGATAACTTCGA
66 AAGTGCAGGCTACTATGCATACCCGATAACTTCGA
91904612 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
91904677 AAGTGCAGGCTACTATGC
66 AAGTGCAGGCTACTATGC
91904695 GTATTAGATA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 80 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCATACCCGATAACTTCGA
Found at i:91909597 original size:48 final size:48
Alignment explanation
Indices: 91909527--91909745 Score: 240
Period size: 48 Copynumber: 4.6 Consensus size: 48
91909517 CTTAGGTACC
** * *
91909527 AATATCATGGCCTGAAGCCAAATCAACAAAGCTCACACCTGAAGTGCT
1 AATATCATGGCCCAAAGCCAAATCAATAAAGCTCACACCCGAAGTGCT
* * * *
91909575 AATTTCATTGCCCAAAGCCAAATCAATGAAGCTCGCACCCGAAGTGCT
1 AATATCATGGCCCAAAGCCAAATCAATAAAGCTCACACCCGAAGTGCT
* * * * * *
91909623 AATATCATGGCCTAAGGCCAAATCAATGAAGCACATACCCGAAGTGCA
1 AATATCATGGCCCAAAGCCAAATCAATAAAGCTCACACCCGAAGTGCT
** * * * * *
91909671 AATATCATGAACCGAAGCAAAATTAATAAAGCTCGCACCTGAAGTGCT
1 AATATCATGGCCCAAAGCCAAATCAATAAAGCTCACACCCGAAGTGCT
*
91909719 AATATCATGGCCTAAAGCCAAATCAAT
1 AATATCATGGCCCAAAGCCAAATCAAT
91909746 GAAGTCCTAA
Statistics
Matches: 136, Mismatches: 35, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
48 136 1.00
ACGTcount: A:0.39, C:0.25, G:0.16, T:0.20
Consensus pattern (48 bp):
AATATCATGGCCCAAAGCCAAATCAATAAAGCTCACACCCGAAGTGCT
Found at i:91909703 original size:96 final size:95
Alignment explanation
Indices: 91909527--91909749 Score: 286
Period size: 96 Copynumber: 2.3 Consensus size: 95
91909517 CTTAGGTACC
** * * * * *
91909527 AATATCATGGCCTGAAGCCAAATCAACAAAGCTCACACCTGAAGTGCTAATTTCATTGCCCAAAG
1 AATATCATGGCCT-AAGCCAAATCAATGAAGCACACACCCGAAGTGCAAATATCATTGACCAAAG
* *
91909592 CCAAATCAATGAAGCTCGCACCCGAAGTGCT
65 CAAAATCAATAAAGCTCGCACCCGAAGTGCT
* *
91909623 AATATCATGGCCTAAGGCCAAATCAATGAAGCACATACCCGAAGTGCAAATATCA-TGAACCGAA
1 AATATCATGGCCTAA-GCCAAATCAATGAAGCACACACCCGAAGTGCAAATATCATTG-ACCAAA
* *
91909687 GCAAAATTAATAAAGCTCGCACCTGAAGTGCT
64 GCAAAATCAATAAAGCTCGCACCCGAAGTGCT
91909719 AATATCATGGCCTAAAGCCAAATCAATGAAG
1 AATATCATGGCCT-AAGCCAAATCAATGAAG
91909750 TCCTAATGAC
Statistics
Matches: 111, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
95 4 0.04
96 105 0.95
97 2 0.02
ACGTcount: A:0.39, C:0.25, G:0.17, T:0.19
Consensus pattern (95 bp):
AATATCATGGCCTAAGCCAAATCAATGAAGCACACACCCGAAGTGCAAATATCATTGACCAAAGC
AAAATCAATAAAGCTCGCACCCGAAGTGCT
Found at i:91918051 original size:47 final size:48
Alignment explanation
Indices: 91917979--91918241 Score: 194
Period size: 47 Copynumber: 5.6 Consensus size: 48
91917969 GTAAGGTGCC
* * * **
91917979 AATGCCATGTCCCAGACACGATCTTACATTAGCTCTTA-TCTCATTTC-
1 AATGCCATGTCCCAGACATGGTCTTACACT-GCTCTTAGTCTCATGGCT
* * * * *
91918026 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCA-TCTCGTAGCT
1 AATGCCATGTCCCAGACATGGTCTTACACTG-CTCTTAGTCTCATGGCT
* * *
91918074 GATG-CATGTCCCAGACAT-GTCTTACACTG-GCTTACGTCTCAAGGCT
1 AATGCCATGTCCCAGACATGGTCTTACACTGCTCTTA-GTCTCATGGCT
* *
91918120 AATG-CATGTCCCAGACAT-GTCTTACACTAGCAC-TAGTCTCGAT-GCC
1 AATGCCATGTCCCAGACATGGTCTTACACT-GCTCTTAGTCTC-ATGGCT
* * *
91918166 AATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA-TAAT-GTGGCT
1 AATGCCATGTCCCAGACATGGTCTTACACT-GCTCTTAGT-CTCATGGCT
*
91918214 GATG-CATGTCCCAGACAT-GTCTTACACT
1 AATGCCATGTCCCAGACATGGTCTTACACT
91918242 AGCCCACAAT
Statistics
Matches: 178, Mismatches: 26, Indels: 25
0.78 0.11 0.11
Matches are distributed among these distances:
44 2 0.01
46 67 0.38
47 83 0.47
48 24 0.13
49 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (48 bp):
AATGCCATGTCCCAGACATGGTCTTACACTGCTCTTAGTCTCATGGCT
Found at i:91918125 original size:46 final size:45
Alignment explanation
Indices: 91918031--91918241 Score: 198
Period size: 46 Copynumber: 4.5 Consensus size: 45
91918021 ATTTCGATGC
* * * *
91918031 CATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTA-GCTGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTA-CGTCTC-AAGGCTAATG
91918078 CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGGCTAATG
1 CATGTCCCAGACATGTCTTACACTGGC-TACGTCTCAAGGCTAATG
* * * *
91918124 CATGTCCCAGACATGTCTTACACTAGC-ACTAGTCTCGATGCCAATG
1 CATGTCCCAGACATGTCTTACACTGGCTAC--GTCTCAAGGCTAATG
*
91918170 CCATGTCCCAGACATGGTCTTACACTGGCT-C-TCAT-AATGTGGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTACGTC-TCAA---GGCTAATG
91918218 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
91918242 AGCCCACAAT
Statistics
Matches: 140, Mismatches: 13, Indels: 23
0.80 0.07 0.13
Matches are distributed among these distances:
44 2 0.01
45 4 0.03
46 72 0.51
47 44 0.31
48 18 0.13
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGGCTACGTCTCAAGGCTAATG
Found at i:91918230 original size:94 final size:93
Alignment explanation
Indices: 91917974--91918244 Score: 265
Period size: 94 Copynumber: 2.9 Consensus size: 93
91917964 CGTGGGTAAG
* * * * * * *
91917974 GTGCCAATGCCATGTCCCAGACACGATCTTACATTAGCTCTTATCTCATT-TC-GATGCCATGTC
1 GTGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA--TAATTGGCTGATG-CATGTC
91918037 CCAGACATGGTCTTACACT-G-ACTATCATCTC
63 CCAGACAT-GTCTTACACTAGCACTA-CATCTC
** *
91918068 GTAGCTGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTC-TCAA--GGCTAATGCATG
1 GT-GCCAATGCCATGTCCCAGACATGGTCTTACACTGGC-T-C-TCAT-AATTGGCTGATGCATG
*
91918128 TCCCAGACATGTCTTACACTAGCACTA-GTCTC
61 TCCCAGACATGTCTTACACTAGCACTACATCTC
91918160 GATGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCATGTCC
1 G-TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-TGGCTGATGCATGTCC
91918225 CAGACATGTCTTACACTAGC
64 CAGACATGTCTTACACTAGC
91918245 CCACAATAAC
Statistics
Matches: 147, Mismatches: 14, Indels: 32
0.76 0.07 0.17
Matches are distributed among these distances:
91 4 0.03
92 22 0.15
93 43 0.29
94 71 0.48
95 6 0.04
96 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (93 bp):
GTGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATTGGCTGATGCATGTCCCA
GACATGTCTTACACTAGCACTACATCTC
Found at i:91918236 original size:140 final size:141
Alignment explanation
Indices: 91917979--91918241 Score: 381
Period size: 140 Copynumber: 1.9 Consensus size: 141
91917969 GTAAGGTGCC
* * ** *
91917979 AATGCCATGTCCCAGACACGATCTTACATTAGCTCTTATCTCATTTCGATGCCATGTCCCAGACA
1 AATGCCATGTCCCAGACACGATCTTACACTAGCACTTATCTCATGCCAATGCCATGTCCCAGACA
*
91918044 TGGTCTTACACTGACTATCATCTCGTAGCTGATGCATGTCCCAGACATGTCTTACACTGGCTTAC
66 TGGTCTTACACTGACTATCATATCGTAGCTGATGCATGTCCCAGACATGTCTTACACTGGCTTAC
91918109 GTCTCAAGGCT
131 GTCTCAAGGCT
*
91918120 AATG-CATGTCCCAGACATG-TCTTACACTAGCAC-TAGTCTCGATGCCAATGCCATGTCCCAGA
1 AATGCCATGTCCCAGACACGATCTTACACTAGCACTTA-TCTC-ATGCCAATGCCATGTCCCAGA
* * *
91918182 CATGGTCTTACACTGGCTCTCATAAT-GTGGCTGATGCATGTCCCAGACATGTCTTACACT
64 CATGGTCTTACACTGACTATCAT-ATCGTAGCTGATGCATGTCCCAGACATGTCTTACACT
91918242 AGCCCACAAT
Statistics
Matches: 109, Mismatches: 10, Indels: 7
0.87 0.08 0.06
Matches are distributed among these distances:
138 2 0.02
139 16 0.15
140 86 0.79
141 5 0.05
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (141 bp):
AATGCCATGTCCCAGACACGATCTTACACTAGCACTTATCTCATGCCAATGCCATGTCCCAGACA
TGGTCTTACACTGACTATCATATCGTAGCTGATGCATGTCCCAGACATGTCTTACACTGGCTTAC
GTCTCAAGGCT
Found at i:91918623 original size:30 final size:30
Alignment explanation
Indices: 91918583--91918640 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
91918573 ATTTCATATT
* *
91918583 TTTGGTAAAATGACCATTTTGCCCCTAGAC
1 TTTGATAAAATGACCATTTTACCCCTAGAC
91918613 TTTGATAAAATGACCATTTTACCCCTAG
1 TTTGATAAAATGACCATTTTACCCCTAG
91918641 GCCCGAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.34
Consensus pattern (30 bp):
TTTGATAAAATGACCATTTTACCCCTAGAC
Found at i:91925737 original size:47 final size:45
Alignment explanation
Indices: 91925659--91925928 Score: 197
Period size: 47 Copynumber: 5.8 Consensus size: 45
91925649 GTGGGTAAGG
* *
91925659 TGCCGATGCCATGTCCCAGATACGGTCTTACACTAGCTCTTATCTCA
1 TGCCGATG-CATGTCCCAGACA-TGTCTTACACTAGCTCTTATCTCA
* * * * * *
91925706 TGTCGATGCCATGTCCTAGACATGGTATTACA-TTGACTATTATCTCG
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CTCTTATCTCA
* * *
91925753 TAGCCGATGCATGCCCCAGACATGTCTTACACTGGCATAC--GTCTCAA
1 T-GCCGATGCATGTCCCAGACATGTCTTACACTAGC-T-CTTATCTC-A
* * ** * *
91925800 GGCCAATGCATGTCTAAGACATGTATTACACTAGCACTTATCTCGA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTTATCTC-A
* * *
91925846 TGCCGATGCCATGTCTCAGACATGGTCTTACACTGGCTCTTATAAT-A
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTTAT-CTCA
*
91925893 TGGCTGATGCATGTCCCAGACATGTCTTACACTAGC
1 T-GCCGATGCATGTCCCAGACATGTCTTACACTAGC
91925929 CCACAATAAC
Statistics
Matches: 174, Mismatches: 36, Indels: 27
0.73 0.15 0.11
Matches are distributed among these distances:
44 1 0.01
46 65 0.37
47 79 0.45
48 28 0.16
49 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (45 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTTATCTCA
Found at i:91927369 original size:9 final size:9
Alignment explanation
Indices: 91927355--91927388 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
91927345 TAGCTTCGAC
91927355 AGAGTTGAA
1 AGAGTTGAA
91927364 AGAGTTGAA
1 AGAGTTGAA
*
91927373 AGCAGTTGCA
1 AG-AGTTGAA
91927383 AGAGTT
1 AGAGTT
91927389 AATGGATAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 15 0.65
10 8 0.35
ACGTcount: A:0.38, C:0.06, G:0.32, T:0.24
Consensus pattern (9 bp):
AGAGTTGAA
Found at i:91932775 original size:29 final size:29
Alignment explanation
Indices: 91932687--91932778 Score: 107
Period size: 29 Copynumber: 3.2 Consensus size: 29
91932677 TGCCTGTATC
* * *
91932687 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
* * *
91932715 TGACCC-TTCAGGCCCAAATCACCTGTATA
1 TGGCCCATT-AGGCCCAAATCACATTTATA
91932744 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
91932773 TGGCCC
1 TGGCCC
91932779 GTTGGGCCTA
Statistics
Matches: 52, Mismatches: 9, Indels: 5
0.79 0.14 0.08
Matches are distributed among these distances:
27 2 0.04
28 10 0.19
29 38 0.73
30 2 0.04
ACGTcount: A:0.28, C:0.32, G:0.14, T:0.26
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTTATA
Found at i:91933026 original size:8 final size:8
Alignment explanation
Indices: 91933013--91933075 Score: 81
Period size: 8 Copynumber: 7.9 Consensus size: 8
91933003 ATAGCCAAAC
*
91933013 TTTCGGCT
1 TTTCGGCA
91933021 TTTCGGCA
1 TTTCGGCA
*
91933029 TTTCGGCT
1 TTTCGGCA
*
91933037 TTTCAGCA
1 TTTCGGCA
* *
91933045 TTTCAGCT
1 TTTCGGCA
91933053 TTTCGGCA
1 TTTCGGCA
91933061 TTTCGGCA
1 TTTCGGCA
91933069 TTTCGGC
1 TTTCGGC
91933076 TTTTGCCGAT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
8 48 1.00
ACGTcount: A:0.10, C:0.25, G:0.22, T:0.43
Consensus pattern (8 bp):
TTTCGGCA
Found at i:91933034 original size:16 final size:16
Alignment explanation
Indices: 91933013--91933075 Score: 99
Period size: 16 Copynumber: 3.9 Consensus size: 16
91933003 ATAGCCAAAC
91933013 TTTCGGCTTTTCGGCA
1 TTTCGGCTTTTCGGCA
*
91933029 TTTCGGCTTTTCAGCA
1 TTTCGGCTTTTCGGCA
*
91933045 TTTCAGCTTTTCGGCA
1 TTTCGGCTTTTCGGCA
*
91933061 TTTCGGCATTTCGGC
1 TTTCGGCTTTTCGGC
91933076 TTTTGCCGAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 42 1.00
ACGTcount: A:0.10, C:0.25, G:0.22, T:0.43
Consensus pattern (16 bp):
TTTCGGCTTTTCGGCA
Found at i:91952827 original size:40 final size:40
Alignment explanation
Indices: 91952733--91952877 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
91952723 TACTCGAATG
*
91952733 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACT
* * *
91952774 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGTGACT
* * *
91952814 ATATCCAGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
91952854 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
91952878 CTTGTCGAGT
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 1 0.01
40 59 0.66
41 28 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:91956167 original size:12 final size:12
Alignment explanation
Indices: 91956150--91956186 Score: 51
Period size: 11 Copynumber: 3.2 Consensus size: 12
91956140 AAAAGAGAAG
91956150 AAATTCAGAAAA
1 AAATTCAGAAAA
91956162 AAATTCA-AAAA
1 AAATTCAGAAAA
*
91956173 AAAATC-GAAAA
1 AAATTCAGAAAA
91956184 AAA
1 AAA
91956187 AGGAAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
11 16 0.70
12 7 0.30
ACGTcount: A:0.73, C:0.08, G:0.05, T:0.14
Consensus pattern (12 bp):
AAATTCAGAAAA
Found at i:91956187 original size:12 final size:12
Alignment explanation
Indices: 91956158--91956214 Score: 50
Period size: 11 Copynumber: 5.0 Consensus size: 12
91956148 AGAAATTCAG
*
91956158 AAAAAAATTC-A
1 AAAAAAAATCGA
91956169 AAAAAAAATCG-
1 AAAAAAAATCGA
*
91956180 AAAAAAAA-GGA
1 AAAAAAAATCGA
*
91956191 AAAAAAAGT-GA
1 AAAAAAAATCGA
91956202 CAAAAAAAATCGA
1 -AAAAAAAATCGA
91956215 GTTAAAAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
10 1 0.03
11 26 0.70
12 8 0.22
13 2 0.05
ACGTcount: A:0.74, C:0.07, G:0.11, T:0.09
Consensus pattern (12 bp):
AAAAAAAATCGA
Found at i:91957177 original size:37 final size:37
Alignment explanation
Indices: 91957126--91957196 Score: 92
Period size: 37 Copynumber: 1.9 Consensus size: 37
91957116 CATTCTTGTA
*
91957126 AAGAGAAAACAAAG-AGAAGAAAAGAAAAAGAAAAAGC
1 AAGAGAAAACAAAGAAAAAG-AAAGAAAAAGAAAAAGC
*
91957163 AAGAGAAGAA-AAAGAAAAAGAAATAAAAAGAAAA
1 AAGAGAA-AACAAAGAAAAAGAAAGAAAAAGAAAA
91957197 GAGAGGCAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
37 24 0.80
38 6 0.20
ACGTcount: A:0.76, C:0.03, G:0.20, T:0.01
Consensus pattern (37 bp):
AAGAGAAAACAAAGAAAAAGAAAGAAAAAGAAAAAGC
Found at i:91957184 original size:15 final size:16
Alignment explanation
Indices: 91957142--91957196 Score: 58
Period size: 15 Copynumber: 3.4 Consensus size: 16
91957132 AAACAAAGAG
*
91957142 AAGAAAAGAAAAAGAAA
1 AAGAAAA-AGAAAGAAA
* *
91957159 AAGCAAGAG-AAGAAA
1 AAGAAAAAGAAAGAAA
*
91957174 AAGAAAAAGAAATAAA
1 AAGAAAAAGAAAGAAA
91957190 AAGAAAA
1 AAGAAAA
91957197 GAGAGGCAAG
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
15 13 0.42
16 13 0.42
17 5 0.16
ACGTcount: A:0.78, C:0.02, G:0.18, T:0.02
Consensus pattern (16 bp):
AAGAAAAAGAAAGAAA
Found at i:91957196 original size:6 final size:6
Alignment explanation
Indices: 91957145--91957185 Score: 55
Period size: 6 Copynumber: 6.3 Consensus size: 6
91957135 CAAAGAGAAG
91957145 AAAAGA AAAAGA AAAAGCA AGAGAAGA AAAAGA AAAAGA AA
1 AAAAGA AAAAGA AAAAG-A A-A-AAGA AAAAGA AAAAGA AA
91957186 TAAAAAGAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
6 23 0.72
7 3 0.09
8 3 0.09
9 3 0.09
ACGTcount: A:0.78, C:0.02, G:0.20, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:91957198 original size:21 final size:21
Alignment explanation
Indices: 91957136--91957196 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
91957126 AAGAGAAAAC
*
91957136 AAAGAGAAGAAAAGAAAAAGAA
1 AAAGA-AAAAAAAGAAAAAGAA
* * *
91957158 AAAGCAAGAGAAGAAAAAGAA
1 AAAGAAAAAAAAGAAAAAGAA
91957179 AAAGAAATAAAAAGAAAA
1 AAAGAAA-AAAAAGAAAA
91957197 GAGAGGCAAG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.77, C:0.02, G:0.20, T:0.02
Consensus pattern (21 bp):
AAAGAAAAAAAAGAAAAAGAA
Found at i:91957278 original size:11 final size:12
Alignment explanation
Indices: 91957247--91957276 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
91957237 TGAGAGAACC
91957247 TGAAAAAGCCTT
1 TGAAAAAGCCTT
91957259 TGAAAAAGCCTT
1 TGAAAAAGCCTT
91957271 TGAAAA
1 TGAAAA
91957277 GCAAAAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.47, C:0.13, G:0.17, T:0.23
Consensus pattern (12 bp):
TGAAAAAGCCTT
Found at i:91959739 original size:18 final size:17
Alignment explanation
Indices: 91959718--91959773 Score: 62
Period size: 15 Copynumber: 3.4 Consensus size: 17
91959708 TTTAACTTGA
* *
91959718 TTTTTTTGGTCACCTTTT
1 TTTTTTTGCTCA-ATTTT
91959736 TTTTTTTGCTCAATTTT
1 TTTTTTTGCTCAATTTT
*
91959753 TTTTTTT-C-GAATTTT
1 TTTTTTTGCTCAATTTT
91959768 TTTTTT
1 TTTTTT
91959774 GATTTTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
15 12 0.34
16 1 0.03
17 11 0.31
18 11 0.31
ACGTcount: A:0.09, C:0.11, G:0.07, T:0.73
Consensus pattern (17 bp):
TTTTTTTGCTCAATTTT
Found at i:91959752 original size:15 final size:15
Alignment explanation
Indices: 91959734--91959784 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
91959724 TGGTCACCTT
91959734 TTTTTTTTTGCTC-AA
1 TTTTTTTTT-CTCGAA
*
91959749 TTTTTTTTTTTCGAA
1 TTTTTTTTTCTCGAA
91959764 TTTTTTTTT-T-G-A
1 TTTTTTTTTCTCGAA
91959776 TTTTTTTTT
1 TTTTTTTTT
91959785 GTTACTCCAA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
12 10 0.29
13 1 0.03
14 3 0.09
15 20 0.59
ACGTcount: A:0.10, C:0.06, G:0.06, T:0.78
Consensus pattern (15 bp):
TTTTTTTTTCTCGAA
Found at i:91959778 original size:12 final size:14
Alignment explanation
Indices: 91959750--91959784 Score: 56
Period size: 12 Copynumber: 2.6 Consensus size: 14
91959740 TTTGCTCAAT
91959750 TTTTTTTTTTCGAA
1 TTTTTTTTTTCGAA
91959764 TTTTTTTTTT-G-A
1 TTTTTTTTTTCGAA
91959776 TTTTTTTTT
1 TTTTTTTTT
91959785 GTTACTCCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 10 0.48
13 1 0.05
14 10 0.48
ACGTcount: A:0.09, C:0.03, G:0.06, T:0.83
Consensus pattern (14 bp):
TTTTTTTTTTCGAA
Found at i:91965677 original size:60 final size:60
Alignment explanation
Indices: 91965584--91965698 Score: 212
Period size: 60 Copynumber: 1.9 Consensus size: 60
91965574 TTCCAGATTT
*
91965584 AATTTCGTGATTTTTGGAGATTGGGAACACCTCGAACGAAGTTGTCAAGTTACTCCGCAA
1 AATTTCGTGATTTTTGGAGATCGGGAACACCTCGAACGAAGTTGTCAAGTTACTCCGCAA
*
91965644 AATTTTGTGATTTTTGGAGATCGGGAACACCTCGAACGAAGTTGTCAAGTTACTC
1 AATTTCGTGATTTTTGGAGATCGGGAACACCTCGAACGAAGTTGTCAAGTTACTC
91965699 TGCAGTTTTT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
60 53 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.31
Consensus pattern (60 bp):
AATTTCGTGATTTTTGGAGATCGGGAACACCTCGAACGAAGTTGTCAAGTTACTCCGCAA
Found at i:91986255 original size:44 final size:44
Alignment explanation
Indices: 91986018--91986425 Score: 223
Period size: 44 Copynumber: 9.6 Consensus size: 44
91986008 AAAGAATTTC
* * *
91986018 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGA-TCAAGGATAG
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAA-GACAG
* * * * * *
91986062 TA-ACCCTATCTCCTTGAGAGTACAATGGAGCGGATT--A-A-AG
1 -AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGACAG
* * * * *
91986102 -GATCTTATCTCTCTGA-AGTTACAGTAGAGAAGA-TCACA-TCAG
1 AGATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGA-AGACAG
* *** *
91986144 -G-TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGA-ATTTC
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGACA---G
* *
91986188 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGACAG
* *
91986232 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACA-
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGACAG
** * * * *
91986275 CTATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATT-AAAATAAG
1 AGATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGA-CAG
* *
91986319 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACA-
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGACAG
** * * *
91986362 CTATCCTATCTCCCCGA-AGTTACAGTGGAGCGGATT--A-A-AG
1 AGATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGACAG
* *
91986402 -GATCTTATCTCTCTGAGGTTACAG
1 AGATCTTATCTCCCTGAGATTACAG
91986426 CAGAGTAGAT
Statistics
Matches: 275, Mismatches: 64, Indels: 54
0.70 0.16 0.14
Matches are distributed among these distances:
38 2 0.01
39 40 0.15
40 3 0.01
41 30 0.11
42 10 0.04
43 57 0.21
44 93 0.34
45 7 0.03
46 32 0.12
47 1 0.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (44 bp):
AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGACAG
Found at i:91986285 original size:87 final size:83
Alignment explanation
Indices: 91986145--91986437 Score: 347
Period size: 87 Copynumber: 3.4 Consensus size: 83
91986135 TCACATCAGG
* * * * * * *
91986145 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGA-ATTTCAGATCTTATCTCCCTGAGGTT
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACA---C-TATCCTATCTCCCTGAAGTT
*
91986209 ACAGTGGAGCAGATTGAAGCCAGAGA
62 ACAGTGGAGCGGATT-AA---AGAGA
91986235 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAG
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAG
91986300 TGGAGCGGATTAAAATAAGAGA
66 TGGAGCGGATT---A-AAGAGA
*
91986322 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCCGAAGTTACAG
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAG
91986387 TGGAGCGGATTAAAG-GA
66 TGGAGCGGATTAAAGAGA
* * * *
91986404 TCTTATCTCTCTGAGGTTACAGCAGAGTAGATCG
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCG
91986438 CATCAAGTCT
Statistics
Matches: 185, Mismatches: 14, Indels: 16
0.86 0.07 0.07
Matches are distributed among these distances:
82 32 0.17
83 3 0.02
84 1 0.01
87 111 0.60
88 1 0.01
89 1 0.01
90 35 0.19
91 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (83 bp):
TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAG
TGGAGCGGATTAAAGAGA
Found at i:92008361 original size:9 final size:9
Alignment explanation
Indices: 92008349--92008373 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
92008339 TTAAAATTTT
92008349 AAAAATTCA
1 AAAAATTCA
92008358 AAAAATTCA
1 AAAAATTCA
92008367 AAAAATT
1 AAAAATT
92008374 ATTTTTACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (9 bp):
AAAAATTCA
Found at i:92008539 original size:18 final size:18
Alignment explanation
Indices: 92008518--92008552 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
92008508 ATACAAATTC
*
92008518 AAAAACTCAAATAAAAAG
1 AAAAAATCAAATAAAAAG
*
92008536 AAAAAATTAAATAAAAA
1 AAAAAATCAAATAAAAA
92008553 ATTAAAATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.77, C:0.06, G:0.03, T:0.14
Consensus pattern (18 bp):
AAAAAATCAAATAAAAAG
Done.