Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 284 of 322
Found at i:94255424 original size:17 final size:17
Alignment explanation
Indices: 94255399--94255441 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
94255389 GGGGCCATGT
94255399 GGGCCCAATAGGCCTAC
1 GGGCCCAATAGGCCTAC
* *
94255416 GGTCCCAATGGGCCTAC
1 GGGCCCAATAGGCCTAC
94255433 GGGCCCAAT
1 GGGCCCAAT
94255442 TGGATAAGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.21, C:0.35, G:0.30, T:0.14
Consensus pattern (17 bp):
GGGCCCAATAGGCCTAC
Found at i:94255643 original size:27 final size:27
Alignment explanation
Indices: 94255613--94255740 Score: 184
Period size: 27 Copynumber: 4.7 Consensus size: 27
94255603 TTAGTTTACC
94255613 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
94255640 AAATTACTAAAATACCCTTGGTATATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
94255667 AAATCACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
94255694 AAATTACCAAAATACCCCTTGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
94255721 AAATTACCGAAATACCCCTG
1 AAATTACCAAAATACCCCTG
94255741 TAGGGTAGAA
Statistics
Matches: 87, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 87 1.00
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:94255752 original size:27 final size:27
Alignment explanation
Indices: 94255695--94255916 Score: 225
Period size: 27 Copynumber: 8.3 Consensus size: 27
94255685 TAGTTTGTAA
* ** *
94255695 AATTACCAAAATACCCCTTGT-TTGTAA
1 AATTACCGAAATACCCC-TGTAGGGTAG
94255722 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
94255749 AATTACCGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
94255776 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* **
94255803 AATTACCGGAATACCTTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
94255830 AAATATCGAAATACCCTTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** *
94255857 AACTACTAAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
94255884 AATTACC-AAGATA-CCTTGTGGGGTAA
1 AATTACCGAA-ATACCCCTGTAGGGTAG
94255910 AATTACC
1 AATTACC
94255917 ATTTTGCCCC
Statistics
Matches: 166, Mismatches: 27, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
26 21 0.13
27 145 0.87
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:94255753 original size:54 final size:54
Alignment explanation
Indices: 94255613--94255917 Score: 228
Period size: 54 Copynumber: 5.7 Consensus size: 54
94255603 TTAGTTTACC
* ** * * **
94255613 AAATTACCAAAATACCCCTGGT-TTGTAAAATTACTAAAATACCCTTGGTA-TATA
1 AAATTACCGAAATACCCCT-GTAGGGTAGAATTACCAAAATACCCTT-GTAGGGTA
* * ** * **
94255667 AAATCACCAAAATACCCCTAGT-TTGTAAAATTACCAAAATACCCCTTGT-TTGTA
1 AAATTACCGAAATACCCCT-GTAGGGTAGAATTACCAAAATA-CCCTTGTAGGGTA
* *
94255721 AAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTATAGGGTA
1 AAATTACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTGTAGGGTA
* ** *
94255775 GAATTACCGAAATACCCCTGTAGGGTAGAATTACCGGAATACCTTTGTAGGGTA
1 AAATTACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTGTAGGGTA
* * * * * * *
94255829 GAAA-TATCGAAATACCCTTGTAAGGTAGAACTACTAAAATACCCCTGTAAGGTA
1 -AAATTACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTGTAGGGTA
* * * *
94255883 GAATTACC-AAGATA-CCTTGTGGGGTAAAATTACCA
1 AAATTACCGAA-ATACCCCTGTAGGGTAGAATTACCA
94255918 TTTTGCCCCT
Statistics
Matches: 209, Mismatches: 35, Indels: 15
0.81 0.14 0.06
Matches are distributed among these distances:
53 28 0.13
54 174 0.83
55 7 0.03
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.27
Consensus pattern (54 bp):
AAATTACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTGTAGGGTA
Found at i:94255761 original size:81 final size:81
Alignment explanation
Indices: 94255613--94255916 Score: 233
Period size: 81 Copynumber: 3.8 Consensus size: 81
94255603 TTAGTTTACC
* ** ** * * *
94255613 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTA-TATAAAATCACCAA
1 AAATTACCAAAATACCCCTTGTTTGTAAAATTACCGAAATACCCTT-GTAGGGTAGAATTACCGA
**
94255677 AATACCCCTAGT-TTGTA
65 AATACCCCTA-TAGGGTA
*
94255694 AAATTACCAAAATACCCCTTGTTTGTAAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAA
1 AAATTACCAAAATACCCCTTGTTTGTAAAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAA
*
94255759 ATACCCTTATAGGGTA
66 ATACCCCTATAGGGTA
* * ** * * * * *
94255775 GAATTACCGAAATACCCC-TGTAGGGTAGAATTACCGGAATACCTTTGTAGGGTAGAAATATCGA
1 AAATTACCAAAATACCCCTTGT-TTGTAAAATTACCGAAATACCCTTGTAGGGTAGAATTACCGA
* * *
94255839 AATACCCTTGTAAGGTA
65 AATACCCCTATAGGGTA
* * * ** * * *
94255856 GAACTACTAAAATACCCC-TGTAAGGTAGAATTACC-AAGATA-CCTTGTGGGGTAAAATTACC
1 AAATTACCAAAATACCCCTTGT-TTGTAAAATTACCGAA-ATACCCTTGTAGGGTAGAATTACC
94255917 ATTTTGCCCC
Statistics
Matches: 185, Mismatches: 34, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
80 23 0.12
81 162 0.88
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.27
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTTGTTTGTAAAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAA
ATACCCCTATAGGGTA
Found at i:94256350 original size:6 final size:6
Alignment explanation
Indices: 94256319--94256392 Score: 62
Period size: 6 Copynumber: 12.0 Consensus size: 6
94256309 TTGCATTCAC
* * *
94256319 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
94256368 -TTACCTG ATACTG ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG
94256393 TCACCTAATT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
5 4 0.07
6 42 0.78
7 6 0.11
8 2 0.04
ACGTcount: A:0.19, C:0.16, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:94256350 original size:25 final size:25
Alignment explanation
Indices: 94256322--94256407 Score: 82
Period size: 25 Copynumber: 3.2 Consensus size: 25
94256312 CATTCACATT
94256322 CTGATTTTGATTCTGTTACCTGATACTGA
1 CTGATTTTGATTCTGTTACCTG--A-T-A
94256351 TTCTGATTTTGATTCTGTTACCTGATA
1 --CTGATTTTGATTCTGTTACCTGATA
* * * *
94256378 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTTTGATTCTGTTACCTGATA
94256403 CTGAT
1 CTGAT
94256408 AATGTTTCTT
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
25 26 0.51
27 1 0.02
28 1 0.02
29 1 0.02
31 22 0.43
ACGTcount: A:0.20, C:0.19, G:0.15, T:0.47
Consensus pattern (25 bp):
CTGATTTTGATTCTGTTACCTGATA
Found at i:94256351 original size:19 final size:19
Alignment explanation
Indices: 94256329--94256386 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
94256319 ATTCTGATTT
94256329 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
*
94256348 TGATTCTG--A--T--T-T
1 TGATTCTGTTACCTGATAC
94256360 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
94256379 TGATTCTG
1 TGATTCTG
94256387 ATTCTGTCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 8 0.27
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 16 0.53
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.47
Consensus pattern (19 bp):
TGATTCTGTTACCTGATAC
Found at i:94256357 original size:31 final size:31
Alignment explanation
Indices: 94256319--94256389 Score: 142
Period size: 31 Copynumber: 2.3 Consensus size: 31
94256309 TTGCATTCAC
94256319 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
94256350 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
94256381 ATTCTGATT
1 ATTCTGATT
94256390 CTGTCACCTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.20, C:0.15, G:0.15, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:94263161 original size:53 final size:54
Alignment explanation
Indices: 94263032--94263286 Score: 265
Period size: 55 Copynumber: 4.8 Consensus size: 54
94263022 ACACGGGTAC
* * * *
94263032 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
94263081 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * *
94263134 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * *
94263189 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
94263242 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
94263287 AAACCCTAAT
Statistics
Matches: 172, Mismatches: 23, Indels: 16
0.82 0.11 0.08
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 2 0.01
53 49 0.28
54 10 0.06
55 71 0.41
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.35
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:94263223 original size:108 final size:110
Alignment explanation
Indices: 94263079--94263276 Score: 312
Period size: 108 Copynumber: 1.8 Consensus size: 110
94263069 ATCCTTTTGA
* *
94263079 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTA-GAAACCTCACCAA
94263142 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* ** *
94263187 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
94263252 TGCCATGCCTTGGCATGGTCTTACA
66 TGCCATGCCTTGGCATGGTCTTACA
94263277 CGGTATCCTT
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.59
109 7 0.09
110 25 0.31
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:94264694 original size:48 final size:47
Alignment explanation
Indices: 94264629--94264800 Score: 158
Period size: 47 Copynumber: 3.6 Consensus size: 47
94264619 TATCTATGTT
*
94264629 GATGCCATGTTCCAGACATGGTCTTACACTGACACCTCTAT-ATGTGCC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGAC-CCTCTATAATGTGCC
* * *
94264677 GATGCCATGTCCCAGACATGTCTTACACT-AGCTCTTGTCTCAA--TGCC
1 GATGCCATGTCCCAGACATGTCTTACACTGA-C-CCTCTAT-AATGTGCC
* * * *
94264724 GACGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-ATAATGTGGCA
1 GATGCCATGTCCCAGACAT-GTCTTACACTGACCCTCTATAATGT-GCC
*
94264772 GATG-GATGTCCCAGACATGTCTTACACTG
1 GATGCCATGTCCCAGACATGTCTTACACTG
94264801 GCACACAAAT
Statistics
Matches: 102, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
45 2 0.02
46 13 0.13
47 52 0.51
48 34 0.33
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGTCTTACACTGACCCTCTATAATGTGCC
Found at i:94271044 original size:21 final size:20
Alignment explanation
Indices: 94271011--94271051 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
94271001 CTTTGAAACT
*
94271011 GGGCACATGCCCGTGTGGAA
1 GGGCACACGCCCGTGTGGAA
94271031 GGGCAACACGCCCGTGTGGAA
1 GGGC-ACACGCCCGTGTGGAA
94271052 CTTGTACATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.22, C:0.27, G:0.39, T:0.12
Consensus pattern (20 bp):
GGGCACACGCCCGTGTGGAA
Found at i:94274446 original size:28 final size:28
Alignment explanation
Indices: 94274406--94274466 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 28
94274396 CTTCGATGTT
* *
94274406 TTGCACACTAAGTTCCATACTCAATATC
1 TTGCACACAAAGTGCCATACTCAATATC
* * *
94274434 TTGCACACAAAGTGCCATTCTTAATATT
1 TTGCACACAAAGTGCCATACTCAATATC
94274462 TTGCA
1 TTGCA
94274467 TACTACGTGT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.31, C:0.25, G:0.10, T:0.34
Consensus pattern (28 bp):
TTGCACACAAAGTGCCATACTCAATATC
Found at i:94288284 original size:40 final size:42
Alignment explanation
Indices: 94288190--94288342 Score: 125
Period size: 40 Copynumber: 3.7 Consensus size: 42
94288180 CCGAGGCTAT
94288190 GTGTAAGACCATATCTGGGATAGGGCATCATTATGAGATTTC
1 GTGTAAGACCATATCTGGGATAGGGCATCATTATGAGATTTC
* * * * *
94288232 GTGCAAGGCCATATTTGGGATA-TG-A-CATTGATGTGATTTC
1 GTGTAAGACCATATCTGGGATAGGGCATCATT-ATGAGATTTC
* * * * * *
94288272 GTGTAAGACCATAGCTGGGCTACTGGTATTGA-TATGAGATTAC
1 GTGTAAGACCATATCTGGGATA-GGGCA-TCATTATGAGATTTC
* * *
94288315 ATGTAAGACCATATCTAGGATATGGCAT
1 GTGTAAGACCATATCTGGGATAGGGCAT
94288343 TGGTATGGTA
Statistics
Matches: 86, Mismatches: 19, Indels: 13
0.73 0.16 0.11
Matches are distributed among these distances:
39 4 0.05
40 27 0.31
41 2 0.02
42 24 0.28
43 27 0.31
44 1 0.01
45 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATAGGGCATCATTATGAGATTTC
Found at i:94290189 original size:22 final size:22
Alignment explanation
Indices: 94290164--94290210 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
94290154 TGATTCGCGA
94290164 CGACTGCTACTGAGATCTCTTC
1 CGACTGCTACTGAGATCTCTTC
94290186 CGACTGCTACTGAGATCTCTTC
1 CGACTGCTACTGAGATCTCTTC
94290208 CGA
1 CGA
94290211 TGTCCTACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.19, C:0.32, G:0.19, T:0.30
Consensus pattern (22 bp):
CGACTGCTACTGAGATCTCTTC
Found at i:94302955 original size:30 final size:30
Alignment explanation
Indices: 94302897--94302956 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
94302887 TTCCCGAGCC
* * *
94302897 TAGGGGCAAAAGTGTAATTATGTAAAAGTT
1 TAGGGGAAAAAATGTAATTATGCAAAAGTT
* *
94302927 TAGGGGAAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGAAAAAATGTAATTATGCAAAAGTT
94302957 CGTATTAAAG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.40, C:0.05, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAATGTAATTATGCAAAAGTT
Found at i:94309548 original size:11 final size:11
Alignment explanation
Indices: 94309532--94309556 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
94309522 TTTAGTTCAA
94309532 GTTAAATGTAT
1 GTTAAATGTAT
94309543 GTTAAATGTAT
1 GTTAAATGTAT
94309554 GTT
1 GTT
94309557 TATAATGCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.48
Consensus pattern (11 bp):
GTTAAATGTAT
Found at i:94334805 original size:45 final size:44
Alignment explanation
Indices: 94334715--94334845 Score: 156
Period size: 45 Copynumber: 3.0 Consensus size: 44
94334705 CTGAATTTAT
* * * *
94334715 TCACCGGCATT-TTGCCTGCTAGGCTCGAGGCCCAAAAAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAGGCCCGAATAATATC
* * *
94334758 TCACTGGCATTATAGCCTGCTAAGCTCAAAGGCCCGAATAATGTC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAGGCCCGAATAATATC
* *
94334803 TCACCAGTATTATAGCCTGCTAGGCTCCAAGGCCCGAATAATA
1 TCACCGGCATTATAGCCTGCTAGGCT-CAAGGCCCGAATAATA
94334846 CTGTACAACA
Statistics
Matches: 73, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
43 10 0.14
44 13 0.18
45 49 0.67
46 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (44 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAGGCCCGAATAATATC
Found at i:94338392 original size:71 final size:71
Alignment explanation
Indices: 94338276--94338418 Score: 268
Period size: 71 Copynumber: 2.0 Consensus size: 71
94338266 TAACACCCTG
94338276 AATTTGGGCCTAGAAGTTTTGGGCCTTGAGCATGGGAGCGGTTGAAGGCAGCTTATAATATTCTG
1 AATTTGGGCCTAGAAGTTTTGGGCCTTGAGCATGGGAGCGGTTGAAGGCAGCTTATAATATTCTG
94338341 TTGTGC
66 TTGTGC
* *
94338347 AATTTGGGCTTAGAAGTTTTGGGCCTTGAGCATGGGAGTGGTTGAAGGCAGCTTATAATATTCTG
1 AATTTGGGCCTAGAAGTTTTGGGCCTTGAGCATGGGAGCGGTTGAAGGCAGCTTATAATATTCTG
94338412 TTGTGC
66 TTGTGC
94338418 A
1 A
94338419 TGTAAATTTC
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 70 1.00
ACGTcount: A:0.22, C:0.13, G:0.32, T:0.34
Consensus pattern (71 bp):
AATTTGGGCCTAGAAGTTTTGGGCCTTGAGCATGGGAGCGGTTGAAGGCAGCTTATAATATTCTG
TTGTGC
Found at i:94339247 original size:27 final size:27
Alignment explanation
Indices: 94339217--94339481 Score: 395
Period size: 27 Copynumber: 9.8 Consensus size: 27
94339207 AATACCAAAG
94339217 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
94339244 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
94339271 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
94339298 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
94339325 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* **
94339352 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * **
94339379 TACCCTTGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
94339406 TACCCTCGATTTAAAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
**
94339433 TACCCTCGATTTATGGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
94339460 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
94339482 CGAAATACCC
Statistics
Matches: 217, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 217 1.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:94339509 original size:27 final size:27
Alignment explanation
Indices: 94339479--94339702 Score: 216
Period size: 27 Copynumber: 8.0 Consensus size: 27
94339469 TTTACAAAAT
*
94339479 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAA
*
94339506 TACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
1 TACCGAAATACCCCTGTA-GG--G---TA--GAAA
*
94339541 TACCGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAA
** *
94339568 TACTAAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAA
** *
94339595 TACCGAAATACCTTTGTAGGGTAAAAA
1 TACCGAAATACCCCTGTAGGGTAGAAA
* *
94339622 TACTGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAA
** *
94339649 TACTAAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAA
* * *
94339676 TACCGAGATACCCTTGTGGGGTA-AAA
1 TACCGAAATACCCCTGTAGGGTAGAAA
94339702 T
1 T
94339703 TACCATTTTA
Statistics
Matches: 167, Mismatches: 22, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
26 3 0.02
27 133 0.80
28 2 0.01
29 2 0.01
30 1 0.01
32 1 0.01
33 2 0.01
34 2 0.01
35 21 0.13
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
TACCGAAATACCCCTGTAGGGTAGAAA
Found at i:94339577 original size:35 final size:35
Alignment explanation
Indices: 94339503--94339579 Score: 118
Period size: 35 Copynumber: 2.2 Consensus size: 35
94339493 TGTAGGGTAG
* *
94339503 AAATACCGAAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCGAAATACCCCTGTAGGGTAGAAATACCA
* *
94339538 AAATACCGAAATACCCCTGTAGGGTAGAATTACTA
1 AAATACCGAAATACCCCTGTAGGGTAGAAATACCA
94339573 AAATACC
1 AAATACC
94339580 CCTGTAGGGT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.21
Consensus pattern (35 bp):
AAATACCGAAATACCCCTGTAGGGTAGAAATACCA
Found at i:94339577 original size:62 final size:62
Alignment explanation
Indices: 94339479--94339606 Score: 202
Period size: 62 Copynumber: 2.1 Consensus size: 62
94339469 TTTACAAAAT
* * *
94339479 TACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAGAAATACCGAAA
* * *
94339541 TACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAGAAATACCGAAA
94339603 TACC
1 TACC
94339607 TTTGTAGGGT
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.22
Consensus pattern (62 bp):
TACCGAAATACCCCTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAGAAATACCGAAA
Found at i:94339673 original size:81 final size:81
Alignment explanation
Indices: 94339538--94339706 Score: 293
Period size: 81 Copynumber: 2.1 Consensus size: 81
94339528 AGAAATACCG
94339538 AAATACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAA
1 AAATACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAA
*
94339603 TACCTTTGTAGGGTAA
66 TACCCTTGTAGGGTAA
* *
94339619 AAATACTGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAGA
1 AAATACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAA
*
94339684 TACCCTTGTGGGGTAA
66 TACCCTTGTAGGGTAA
*
94339700 AATTACC
1 AAATACC
94339707 ATTTTACCCC
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 82 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (81 bp):
AAATACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAA
TACCCTTGTAGGGTAA
Found at i:94340070 original size:26 final size:27
Alignment explanation
Indices: 94340041--94340100 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
94340031 CCACATATAT
*
94340041 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
94340067 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
94340094 ATATCTG
1 ATATCTG
94340101 GTAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:94340228 original size:6 final size:6
Alignment explanation
Indices: 94340219--94340392 Score: 124
Period size: 6 Copynumber: 28.3 Consensus size: 6
94340209 TTGCATTCAC
* * *
94340219 ATTCTG ATTCTG ATTCT- ATTACTTG ATACTG ATTCTG ATTATG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG ATT--CTG
* * *
94340269 ATTTTG ATTCTG GTTCTG ATTCTG ATTCT- ATTACCTG ATACTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * *
94340318 ATTCTG ATTCTG ATTTTG ATTCTG -TCACCTG ATTCTG GTTCTG ATTCTA
1 ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
* *
94340367 ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
94340393 AATGTTTCTT
Statistics
Matches: 131, Mismatches: 23, Indels: 28
0.72 0.13 0.15
Matches are distributed among these distances:
5 10 0.08
6 105 0.80
7 9 0.07
8 7 0.05
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:94340254 original size:31 final size:31
Alignment explanation
Indices: 94340219--94340328 Score: 136
Period size: 31 Copynumber: 3.5 Consensus size: 31
94340209 TTGCATTCAC
94340219 ATTCTGATTCTGATTCTATTACTTGATACTG
1 ATTCTGATTCTGATTCTATTACTTGATACTG
* *
94340250 ATTCTGATTATG-TTACCTAATT--TTGATTCTG
1 ATTCTGATTCTGATT--CT-ATTACTTGATACTG
* *
94340281 GTTCTGATTCTGATTCTATTACCTGATACTG
1 ATTCTGATTCTGATTCTATTACTTGATACTG
94340312 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
94340329 GATTTTGATT
Statistics
Matches: 66, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
29 3 0.05
30 4 0.06
31 52 0.79
32 4 0.06
33 3 0.05
ACGTcount: A:0.21, C:0.16, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTATTACTTGATACTG
Found at i:94340303 original size:37 final size:37
Alignment explanation
Indices: 94340242--94340332 Score: 119
Period size: 37 Copynumber: 2.5 Consensus size: 37
94340232 TTCTATTACT
* * **
94340242 TGATACTGATTCTGATTATGTTACCTAATTTTGATTC
1 TGATTCTGATTCTGATTATATTACCTAATACTGATTC
* * *
94340279 TGGTTCTGATTCTGATTCTATTACCTGATACTGATTC
1 TGATTCTGATTCTGATTATATTACCTAATACTGATTC
94340316 TGATTCTGATTCTGATT
1 TGATTCTGATTCTGATT
94340333 TTGATTCTGT
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.21, C:0.15, G:0.15, T:0.48
Consensus pattern (37 bp):
TGATTCTGATTCTGATTATATTACCTAATACTGATTC
Found at i:94340317 original size:62 final size:61
Alignment explanation
Indices: 94340220--94340341 Score: 192
Period size: 62 Copynumber: 2.0 Consensus size: 61
94340210 TGCATTCACA
*
94340220 TTCTGATTCTGATTCTATTACTTGATACTGATTCTGATTATG-TTACCTAATTTTGATTCTGG
1 TTCTGATTCTGATTCTATTACCTGATACTGATTCTGATTATGATT--CTAATTTTGATTCTGG
* *
94340282 TTCTGATTCTGATTCTATTACCTGATACTGATTCTGATTCTGATTCTGATTTTGATTCTG
1 TTCTGATTCTGATTCTATTACCTGATACTGATTCTGATTATGATTCTAATTTTGATTCTG
94340342 TCACCTGATT
Statistics
Matches: 56, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
61 14 0.25
62 40 0.71
63 2 0.04
ACGTcount: A:0.20, C:0.16, G:0.15, T:0.50
Consensus pattern (61 bp):
TTCTGATTCTGATTCTATTACCTGATACTGATTCTGATTATGATTCTAATTTTGATTCTGG
Found at i:94340348 original size:43 final size:43
Alignment explanation
Indices: 94340273--94340384 Score: 152
Period size: 43 Copynumber: 2.6 Consensus size: 43
94340263 TACCTAATTT
* * *
94340273 TGATTCTGGTTCTGATTCTGATTCTATTACCTGATACTGATTC
1 TGATTCTGATTCTGATTTTGATTCTATCACCTGATACTGATTC
* * *
94340316 TGATTCTGATTCTGATTTTGATTCTGTCACCTGATTCTGGTTC
1 TGATTCTGATTCTGATTTTGATTCTATCACCTGATACTGATTC
* *
94340359 TGATTCTAATTCTCATTTTGATTCTA
1 TGATTCTGATTCTGATTTTGATTCTA
94340385 GTTCTGATAA
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (43 bp):
TGATTCTGATTCTGATTTTGATTCTATCACCTGATACTGATTC
Found at i:94340350 original size:37 final size:36
Alignment explanation
Indices: 94340273--94340371 Score: 121
Period size: 37 Copynumber: 2.7 Consensus size: 36
94340263 TACCTAATTT
94340273 TGATTCTGGTTCTGATTCTGATTCTATTACCTGATAC
1 TGATTCTGGTTCTGATTCTGATTCTATTA-CTGATAC
* *
94340310 TGATTCTGATTCTGATTCTGATTTTGATT-CTG-TCACC
1 TGATTCTGGTTCTGATTCTGATTCT-ATTACTGAT-A-C
*
94340347 TGATTCTGGTTCTGATTCTAATTCT
1 TGATTCTGGTTCTGATTCTGATTCT
94340372 CATTTTGATT
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
35 1 0.02
36 4 0.07
37 46 0.85
38 3 0.06
ACGTcount: A:0.17, C:0.18, G:0.16, T:0.48
Consensus pattern (36 bp):
TGATTCTGGTTCTGATTCTGATTCTATTACTGATAC
Found at i:94340350 original size:62 final size:61
Alignment explanation
Indices: 94340222--94340359 Score: 181
Period size: 62 Copynumber: 2.2 Consensus size: 61
94340212 CATTCACATT
* *
94340222 CTGATTCTGATTCTATTACTTGATACTGATTCTGATTATGTTACCTAATTTTGATTCTGGTT
1 CTGATTCTGATTCTATTACCTGATACTGATTCTGATTATGTTA-CTAATTTTGATTCTGGTC
* *
94340284 CTGATTCTGATTCTATTACCTGATACTGATTCTGATTCTGATT-CTGATTTTGATTCT-GTCAC
1 CTGATTCTGATTCTATTACCTGATACTGATTCTGATTATG-TTACTAATTTTGATTCTGGT--C
*
94340346 CTGATTCTGGTTCT
1 CTGATTCTGATTCT
94340360 GATTCTAATT
Statistics
Matches: 68, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
60 2 0.03
61 13 0.19
62 51 0.75
63 2 0.03
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (61 bp):
CTGATTCTGATTCTATTACCTGATACTGATTCTGATTATGTTACTAATTTTGATTCTGGTC
Found at i:94344677 original size:33 final size:33
Alignment explanation
Indices: 94344627--94344710 Score: 89
Period size: 33 Copynumber: 2.5 Consensus size: 33
94344617 GTTTATTGTC
94344627 CCAACGGACTATCTCTGTTCTGTACTTACTATT
1 CCAACGGACTATCTCTGTTCTGTACTTACTATT
* * * * *
94344660 CCAAC-GAGCTATTTCTGTTTTGTATTTACTGTC
1 CCAACGGA-CTATCTCTGTTCTGTACTTACTATT
**
94344693 CCAACAAACTATCTCTGT
1 CCAACGGACTATCTCTGT
94344711 GGATGCCATG
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
32 2 0.05
33 39 0.93
34 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.12, T:0.39
Consensus pattern (33 bp):
CCAACGGACTATCTCTGTTCTGTACTTACTATT
Found at i:94352335 original size:26 final size:26
Alignment explanation
Indices: 94352306--94352474 Score: 99
Period size: 26 Copynumber: 6.8 Consensus size: 26
94352296 TCTTCTCTCA
*
94352306 AGCCATATAA-CAGGAAGGTCACAAAG
1 AGCCAT-TAATCAGGAAGCTCACAAAG
*
94352332 AGCCATTAATCGGGAAGCTCACAAAG
1 AGCCATTAATCAGGAAGCTCACAAAG
* ***
94352358 AGCC--T-ATCAGGAAGCTTA-TTCG
1 AGCCATTAATCAGGAAGCTCACAAAG
* * * *
94352380 GGCTATATAAT-AAGAAGCTCA-TAAG
1 AGCCAT-TAATCAGGAAGCTCACAAAG
*
94352405 AGCCA-TAATCAGGAAGTTCACAAAG
1 AGCCATTAATCAGGAAGCTCACAAAG
* * *
94352430 A-ACTTTCAATCAGGAAGCTCACGAAG
1 AGCCATT-AATCAGGAAGCTCACAAAG
94352456 AGCC-TTCAATCAGG-AGCTC
1 AGCCATT-AATCAGGAAGCTC
94352475 TGGACAGCCA
Statistics
Matches: 110, Mismatches: 23, Indels: 21
0.71 0.15 0.14
Matches are distributed among these distances:
22 3 0.03
23 15 0.14
24 10 0.09
25 27 0.25
26 54 0.49
27 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.19
Consensus pattern (26 bp):
AGCCATTAATCAGGAAGCTCACAAAG
Found at i:94357114 original size:40 final size:40
Alignment explanation
Indices: 94357059--94357136 Score: 138
Period size: 40 Copynumber: 1.9 Consensus size: 40
94357049 TTTACAGTTC
*
94357059 AATCCCTAAATCATATTTTTAGCAAAATTCACTTTGTATT
1 AATCCCTAAATCATATTTTCAGCAAAATTCACTTTGTATT
*
94357099 AATCCCTAAATCATATTTTCATCAAAATTCACTTTGTA
1 AATCCCTAAATCATATTTTCAGCAAAATTCACTTTGTA
94357137 AAAGTTGTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.36, C:0.19, G:0.04, T:0.41
Consensus pattern (40 bp):
AATCCCTAAATCATATTTTCAGCAAAATTCACTTTGTATT
Found at i:94364149 original size:23 final size:24
Alignment explanation
Indices: 94364098--94364149 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
94364088 CCTTGTAATG
* *
94364098 GGAAGCTCACACAGAGCCATTTCA
1 GGAAGCTCACAAAGAGCCATCTCA
*
94364122 GGAAGCTCATAAAGAGCC-TCTCA
1 GGAAGCTCACAAAGAGCCATCTCA
94364145 GGAAG
1 GGAAG
94364150 GTTACCGGAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
23 9 0.36
24 16 0.64
ACGTcount: A:0.35, C:0.25, G:0.25, T:0.15
Consensus pattern (24 bp):
GGAAGCTCACAAAGAGCCATCTCA
Found at i:94364213 original size:25 final size:23
Alignment explanation
Indices: 94364163--94364213 Score: 57
Period size: 25 Copynumber: 2.1 Consensus size: 23
94364153 ACCGGACTAT
* *
94364163 ATAATAGGAAGCTCATAAGAGCC
1 ATAATAGGAAGCTCAAAAGAACC
*
94364186 ATAATCGGAAAGCTCACAAAGAACC
1 ATAATAGG-AAGCTCA-AAAGAACC
94364211 ATA
1 ATA
94364214 TCAAAAAGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 7 0.30
24 7 0.30
25 9 0.39
ACGTcount: A:0.47, C:0.20, G:0.18, T:0.16
Consensus pattern (23 bp):
ATAATAGGAAGCTCAAAAGAACC
Found at i:94364311 original size:25 final size:25
Alignment explanation
Indices: 94364283--94364331 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
94364273 AAATAGCTAA
*
94364283 TTTAA-CGGAAAGTTCATGAAGAGCC
1 TTTAATCGGAAAGCTCAT-AAGAGCC
*
94364308 TTTAATCGGAATGCTCATAAGAGC
1 TTTAATCGGAAAGCTCATAAGAGC
94364332 TAAGGTGTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (25 bp):
TTTAATCGGAAAGCTCATAAGAGCC
Found at i:94371777 original size:33 final size:32
Alignment explanation
Indices: 94371730--94371799 Score: 79
Period size: 33 Copynumber: 2.2 Consensus size: 32
94371720 AATAATTTAC
*
94371730 TTTTCTGGTGTTTGGATGA-ATCTGTGTAAAATA
1 TTTTCTGGTATTTGGATGATATCT-TG-AAAATA
* * *
94371763 TTTTCTGTTATTTGGCTGATTTCTTGAAAATA
1 TTTTCTGGTATTTGGATGATATCTTGAAAATA
94371795 TTTTC
1 TTTTC
94371800 CTGAATAGCT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
32 11 0.34
33 18 0.56
34 3 0.09
ACGTcount: A:0.21, C:0.09, G:0.19, T:0.51
Consensus pattern (32 bp):
TTTTCTGGTATTTGGATGATATCTTGAAAATA
Found at i:94376661 original size:37 final size:37
Alignment explanation
Indices: 94376611--94376689 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
94376601 TTATTACGAA
* *
94376611 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
94376648 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
94376685 GTCTT
1 GTCTT
94376690 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:94376886 original size:47 final size:47
Alignment explanation
Indices: 94376810--94376920 Score: 141
Period size: 47 Copynumber: 2.4 Consensus size: 47
94376800 CTTCGGGACT
* * * * *
94376810 TATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* * * *
94376857 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
94376904 TATCACATATATACACT
1 TATCACATATATACACT
94376921 GTCTTGGCTG
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 54 1.00
ACGTcount: A:0.27, C:0.32, G:0.10, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
Found at i:94379441 original size:30 final size:30
Alignment explanation
Indices: 94379393--94379452 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
94379383 TTCCCAAGCC
* * *
94379393 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAAATATAATTATGCAAAAGTT
* *
94379423 TAGGGGAAAAAATATAATTTTGCCAAAGTT
1 TAGGGGAAAAAATATAATTATGCAAAAGTT
94379453 CGTATTAAAG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.42, C:0.07, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAAATATAATTATGCAAAAGTT
Found at i:94388821 original size:18 final size:19
Alignment explanation
Indices: 94388800--94388841 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
94388790 AAAAGTAATT
* *
94388800 TAAAAAG-ATAAATAAAGA
1 TAAAAAGTAAAAATAAAAA
94388818 T-AAAAGTAAAAATAAAAA
1 TAAAAAGTAAAAATAAAAA
94388836 TAAAAA
1 TAAAAA
94388842 TAATAAATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (19 bp):
TAAAAAGTAAAAATAAAAA
Found at i:94388829 original size:7 final size:6
Alignment explanation
Indices: 94388809--94388849 Score: 55
Period size: 6 Copynumber: 6.7 Consensus size: 6
94388799 TTAAAAAGAT
* *
94388809 AAATAA AGATAA AAGTAA AAATAA AAATAA AAATAA TAAAT
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA -AAAT
94388850 GAAAGTCTTC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
6 26 0.87
7 4 0.13
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.20
Consensus pattern (6 bp):
AAATAA
Found at i:94390184 original size:29 final size:30
Alignment explanation
Indices: 94390152--94390208 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
94390142 ACCATGAATA
*
94390152 TAATTAAACTAACAA-ATTCAACCAAAAAC
1 TAATTAAACTAACAAGACTCAACCAAAAAC
*
94390181 TAATTACACTAACAAGACTCAACCAAAA
1 TAATTAAACTAACAAGACTCAACCAAAA
94390209 GCAATCGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.56, C:0.23, G:0.02, T:0.19
Consensus pattern (30 bp):
TAATTAAACTAACAAGACTCAACCAAAAAC
Found at i:94394043 original size:38 final size:38
Alignment explanation
Indices: 94393984--94394057 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 38
94393974 GTCCTCTTGT
*
94393984 CCTTCCTCTATGTATCATAGGCATTGTCTTATTTCTTC
1 CCTTCCTCTATGTATCATAGGCATTGCCTTATTTCTTC
* ** *
94394022 CCTTCCTCTATTTATTGTAGGCTTTGCCTTATTTCT
1 CCTTCCTCTATGTATCATAGGCATTGCCTTATTTCT
94394058 CTTCGGTTTC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.14, C:0.26, G:0.11, T:0.50
Consensus pattern (38 bp):
CCTTCCTCTATGTATCATAGGCATTGCCTTATTTCTTC
Found at i:94410886 original size:29 final size:30
Alignment explanation
Indices: 94410854--94410913 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
94410844 TTCCCGAGCC
94410854 TAGGGG-AAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
94410883 TAGGGGCAAAATTGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
94410913 T
1 T
94410914 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:94411689 original size:68 final size:64
Alignment explanation
Indices: 94411573--94411831 Score: 233
Period size: 68 Copynumber: 3.9 Consensus size: 64
94411563 TGGATGATAC
** * * *
94411573 AGATAGTATGTAGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGT-GTACAAGAGAGCTAC
1 AGATA-TATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAG-ACAAGAGAGCTAC
94411637 AAG
64 --G
* *
94411640 ACATTATGATGTAGCTAGGTCACATGGGTGATACT-ATGTGTACACCATGTAGACAAGAGAGCTA
1 AGA-TAT-ATGTAGCTAGGTCACATGGGTGGTACTGA-GTGTACACCATGTAGACAAGAGAGCTA
94411704 CG
63 CG
* * *
94411706 AGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAG-G-ACACCATGTAGACAAGAGAGC
1 AGATATATGTAGCTAGGTCACATGGGTGG-T--A-CTG-AGTGTACACCATGTAGACAAGAGAGC
94411769 TACG
61 TACG
* * * *
94411773 AGATAAAT-TGGCTACGTCACATGGGTGGTACTGAGTGTTCACCATGT-GTACAAGAGAGC
1 AGATATATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAG-ACAAGAGAGC
94411832 CGAACTATAT
Statistics
Matches: 160, Mismatches: 19, Indels: 30
0.77 0.09 0.14
Matches are distributed among these distances:
61 2 0.01
62 4 0.03
63 19 0.12
64 20 0.12
65 5 0.03
66 19 0.12
67 37 0.23
68 51 0.32
69 2 0.01
70 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.24
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAGACAAGAGAGCTACG
Found at i:94415340 original size:39 final size:39
Alignment explanation
Indices: 94415286--94415361 Score: 143
Period size: 39 Copynumber: 1.9 Consensus size: 39
94415276 TATTCAAAAG
*
94415286 ATGAAACTGAACATGCCGAGCATTTGAGAATCTTATTGC
1 ATGAAACTGAACATGCCGAGCATTTAAGAATCTTATTGC
94415325 ATGAAACTGAACATGCCGAGCATTTAAGAATCTTATT
1 ATGAAACTGAACATGCCGAGCATTTAAGAATCTTATT
94415362 ACAGACTCTG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (39 bp):
ATGAAACTGAACATGCCGAGCATTTAAGAATCTTATTGC
Found at i:94418441 original size:40 final size:40
Alignment explanation
Indices: 94418375--94418634 Score: 425
Period size: 40 Copynumber: 6.5 Consensus size: 40
94418365 CGCTCGAATA
* * *
94418375 CCTTCGGAACATAGCTCGGATA-TAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-ACTAGTAACTCGCACAAATG
94418415 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
* *
94418455 CCTTCAGGACTTAGCCCGGAACTAGTAACTGGCACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
94418495 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
94418535 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
*
94418575 CCTTCGGGACTTAGCCCGGAACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACT--CGCACAAATG
94418616 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
94418635 TTATCATCCA
Statistics
Matches: 209, Mismatches: 8, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
39 1 0.00
40 180 0.86
41 24 0.11
42 4 0.02
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.20
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
Found at i:94426815 original size:40 final size:40
Alignment explanation
Indices: 94426771--94426987 Score: 294
Period size: 40 Copynumber: 5.4 Consensus size: 40
94426761 CGCTCGAATA
* *
94426771 CCTTCAGGACATAGCCCGGATA-TAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGA-ACTAGTAACTCACACAAATG
* **
94426811 CCTTCGGGACTTAGCCCAGAACTAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCACACAAATG
* *
94426851 CCTTCGGGACTTAGCCCGAAACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCACACAAATG
*
94426891 CCTTCGGGACTTAGCGCGGAACTAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCACACAAATG
* * *
94426931 CCTTCGGGACTTAGCCTGGAACTAGTCACT-AGCGCAAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCA-CAC-AAATG
94426972 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
94426988 AGGTGATCAT
Statistics
Matches: 159, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 2 0.01
40 136 0.86
41 21 0.13
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAACTAGTAACTCACACAAATG
Found at i:94430997 original size:22 final size:24
Alignment explanation
Indices: 94430963--94431006 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
94430953 ATTGGTTTGG
*
94430963 TTTGAGATGATGATAT-GATGAGT
1 TTTGAGATGATGAAATGGATGAGT
*
94430986 TTTGTGAT-ATGAAATGGATGA
1 TTTGAGATGATGAAATGGATGA
94431007 TATTATGATG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.32, C:0.00, G:0.30, T:0.39
Consensus pattern (24 bp):
TTTGAGATGATGAAATGGATGAGT
Found at i:94435345 original size:40 final size:39
Alignment explanation
Indices: 94435261--94435445 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
94435251 TTGAATGATG
* * * *
94435261 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
94435301 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
94435341 TCCGGGCTAAGCCCGAAGGCATTGGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
94435380 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
94435421 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
94435446 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 33 0.27
40 79 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:94435397 original size:79 final size:81
Alignment explanation
Indices: 94435261--94435443 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
94435251 TTGAATGATG
* *
94435261 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
94435325 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
94435340 TTCCGGGCTAAG-CCCGAAGGCATTGGTG-TGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
94435402 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
94435420 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
94435444 TGAACGAGGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 29 0.33
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:94435467 original size:79 final size:79
Alignment explanation
Indices: 94435314--94435468 Score: 181
Period size: 79 Copynumber: 2.0 Consensus size: 79
94435304 GGACTAAGAT
* *** *
94435314 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAA
94435379 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
94435393 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-C
*
94435456 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
94435469 ATTCTGAAGG
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
78 2 0.03
79 39 0.61
80 23 0.36
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAA
ATCCGGGTTAAGTC
Found at i:94444153 original size:39 final size:39
Alignment explanation
Indices: 94444110--94444302 Score: 233
Period size: 39 Copynumber: 4.9 Consensus size: 39
94444100 AAAAGTACCG
* *
94444110 AAGTACAATAGAGGCATGTAAGTGCAATCAGGGGTATCA
1 AAGTACAATAGGGGCACGTAAGTGCAATCAGGGGTATCA
* * * *
94444149 AAGTACAACAAGGGCACGTAATTGCAATTAGGGGTATCA
1 AAGTACAATAGGGGCACGTAAGTGCAATCAGGGGTATCA
* * * * *
94444188 AAGTACGACAGGGGCACGTAAGTGCGATCAGGGGTACCG
1 AAGTACAATAGGGGCACGTAAGTGCAATCAGGGGTATCA
* * * *
94444227 AAGTACAATAGGGGCACGTAAGTGCAATTAAGGGTACCG
1 AAGTACAATAGGGGCACGTAAGTGCAATCAGGGGTATCA
* *
94444266 AAGTACGATAGGGGCACGTAAGTGCGATCAGGGGTAT
1 AAGTACAATAGGGGCACGTAAGTGCAATCAGGGGTAT
94444303 AATTTTATAA
Statistics
Matches: 131, Mismatches: 23, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 131 1.00
ACGTcount: A:0.34, C:0.16, G:0.32, T:0.18
Consensus pattern (39 bp):
AAGTACAATAGGGGCACGTAAGTGCAATCAGGGGTATCA
Found at i:94444210 original size:19 final size:20
Alignment explanation
Indices: 94444188--94444299 Score: 90
Period size: 19 Copynumber: 5.8 Consensus size: 20
94444178 AGGGGTATCA
94444188 AAGTACGA-CAGGGGCACGT
1 AAGTACGATCAGGGGCACGT
* *
94444207 AAGTGCGATCAGGGGTACCG-
1 AAGTACGATCAGGGGCA-CGT
*
94444227 AAGTACAAT-AGGGGCACGT
1 AAGTACGATCAGGGGCACGT
* * * * *
94444246 AAGTGCAATTAAGGGTACCG-
1 AAGTACGATCAGGGGCA-CGT
94444266 AAGTACGAT-AGGGGCACGT
1 AAGTACGATCAGGGGCACGT
*
94444285 AAGTGCGATCAGGGG
1 AAGTACGATCAGGGG
94444300 TATAATTTTA
Statistics
Matches: 73, Mismatches: 13, Indels: 13
0.74 0.13 0.13
Matches are distributed among these distances:
18 4 0.05
19 34 0.47
20 31 0.42
21 4 0.05
ACGTcount: A:0.31, C:0.17, G:0.37, T:0.15
Consensus pattern (20 bp):
AAGTACGATCAGGGGCACGT
Found at i:94444242 original size:78 final size:78
Alignment explanation
Indices: 94444104--94444301 Score: 261
Period size: 78 Copynumber: 2.5 Consensus size: 78
94444094 GCTATCAAAA
* * * * * * *
94444104 GTACCGAAGTACAATAGAGGCATGTAAGTGCAATCAGGGGTATCAAAGTACAACAAGGGCACGTA
1 GTACCAAAGTACGACAGGGGCACGTAAGTGCGATCAGGGGTACCAAAGTACAACAAGGGCACGTA
* *
94444169 ATTGCAATTAGGG
66 AGTGCAATTAAGG
* * * *
94444182 GTATCAAAGTACGACAGGGGCACGTAAGTGCGATCAGGGGTACCGAAGTACAATAGGGGCACGTA
1 GTACCAAAGTACGACAGGGGCACGTAAGTGCGATCAGGGGTACCAAAGTACAACAAGGGCACGTA
94444247 AGTGCAATTAAGG
66 AGTGCAATTAAGG
* *
94444260 GTACCGAAGTACGATAGGGGCACGTAAGTGCGATCAGGGGTA
1 GTACCAAAGTACGACAGGGGCACGTAAGTGCGATCAGGGGTA
94444302 TAATTTTATA
Statistics
Matches: 104, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
78 104 1.00
ACGTcount: A:0.34, C:0.16, G:0.32, T:0.18
Consensus pattern (78 bp):
GTACCAAAGTACGACAGGGGCACGTAAGTGCGATCAGGGGTACCAAAGTACAACAAGGGCACGTA
AGTGCAATTAAGG
Found at i:94445957 original size:15 final size:16
Alignment explanation
Indices: 94445937--94445966 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
94445927 GAAAATTGCC
94445937 AAAATGGG-CTAAATA
1 AAAATGGGACTAAATA
94445952 AAAATGGGACTAAAT
1 AAAATGGGACTAAAT
94445967 TGGAATTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.53, C:0.07, G:0.20, T:0.20
Consensus pattern (16 bp):
AAAATGGGACTAAATA
Found at i:94449476 original size:15 final size:16
Alignment explanation
Indices: 94449456--94449485 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
94449446 GAAAATTGCC
94449456 AAAATGGG-CTAAATA
1 AAAATGGGACTAAATA
94449471 AAAATGGGACTAAAT
1 AAAATGGGACTAAAT
94449486 TGGAATTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.53, C:0.07, G:0.20, T:0.20
Consensus pattern (16 bp):
AAAATGGGACTAAATA
Found at i:94454062 original size:47 final size:48
Alignment explanation
Indices: 94453919--94454088 Score: 158
Period size: 47 Copynumber: 3.6 Consensus size: 48
94453909 GGCGAGGGCT
* * * * * *
94453919 AGTGTAAGA-CATGTCTGGGACA-AGCATCGGCCACGAGACG-TAAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGACTACGAGAGGAT-AGTC
*
94453965 AATGTAAGA-CATGTCTAGGACAT-GCATCGACTACGAGAGGATAGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGACTACGAGAGGATAGTC
* * *
94454011 AGTGTAAGACCACGTCTAGGACATGGCATCGACT-TGAGA-TATGAG-C
1 AGTGTAAGACCATGTCTAGGACATGGCATCGACTACGAGAGGAT-AGTC
*
94454057 TAGTGTAAGACCGTGTCTAGGACATGGCATCG
1 -AGTGTAAGACCATGTCTAGGACATGGCATCG
94454089 GCACCTTACC
Statistics
Matches: 106, Mismatches: 12, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
46 48 0.45
47 49 0.46
48 9 0.08
ACGTcount: A:0.31, C:0.20, G:0.29, T:0.21
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCGACTACGAGAGGATAGTC
Found at i:94454080 original size:140 final size:141
Alignment explanation
Indices: 94453827--94454090 Score: 313
Period size: 140 Copynumber: 1.9 Consensus size: 141
94453817 TGTGAGCTAG
* * * * * *
94453827 TGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAATCAGTGCAAGGCCATGTCTGGTA
1 TGTAAGACATGTCTAGGACATGCATCGACCACATGAGGAGAATCAGTGCAAGACCACGTCTGGTA
* * *
94453892 CATGGCATCGACATTGAGGCGAGGGCTAGTGTAAGACATGTCTGGGACA-AGCATCGGCCACGAG
66 CATGGCATCGACATTGAGGAGAGAGCTAGTGTAAGACATGTCTAGGACATAGCATCGGCCACGAG
94453956 ACGTAAGCCAA
131 ACGTAAGCCAA
* * * *
94453967 TGTAAGACATGTCTAGGACATGCATCGACTACGA-GAGGATAGTCAGTGTAAGACCACGTCTAGG
1 TGTAAGACATGTCTAGGACATGCATCGACCAC-ATGAGGAGAATCAGTGCAAGACCACGTCT-GG
* * *
94454031 -ACATGGCATCGAC-TTGA-GATATGAGCTAGTGTAAGACCGTGTCTAGGACATGGCATCGGC
64 TACATGGCATCGACATTGAGGAGA-GAGCTAGTGTAAGA-CATGTCTAGGACATAGCATCGGC
94454091 ACCTTACCTT
Statistics
Matches: 103, Mismatches: 16, Indels: 9
0.80 0.12 0.07
Matches are distributed among these distances:
138 2 0.02
139 17 0.17
140 73 0.71
141 11 0.11
ACGTcount: A:0.29, C:0.20, G:0.30, T:0.21
Consensus pattern (141 bp):
TGTAAGACATGTCTAGGACATGCATCGACCACATGAGGAGAATCAGTGCAAGACCACGTCTGGTA
CATGGCATCGACATTGAGGAGAGAGCTAGTGTAAGACATGTCTAGGACATAGCATCGGCCACGAG
ACGTAAGCCAA
Found at i:94461534 original size:46 final size:45
Alignment explanation
Indices: 94461484--94461600 Score: 128
Period size: 46 Copynumber: 2.5 Consensus size: 45
94461474 GACAAGGGCT
* * *
94461484 AGTGTAAGATATGTTTGGAACATGCATTGGCCACGAGACG-TAAGCC
1 AGTGTAAGACATGTTTGG-ACATGCATTAGCCACGAGAGGAT-AGCC
* * *
94461530 AGTGTAAGACATGTCTAGGACATGCATTAGCTACGAGAGGATAGTC
1 AGTGTAAGACATGT-TTGGACATGCATTAGCCACGAGAGGATAGCC
94461576 AGTGTAAGACCATGTTTGGGACATG
1 AGTGTAAGA-CATGTTT-GGACATG
94461601 GCATCGGCTT
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
46 44 0.73
47 16 0.27
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.25
Consensus pattern (45 bp):
AGTGTAAGACATGTTTGGACATGCATTAGCCACGAGAGGATAGCC
Found at i:94461645 original size:47 final size:48
Alignment explanation
Indices: 94461433--94461655 Score: 133
Period size: 47 Copynumber: 4.8 Consensus size: 48
94461423 ACATTATGAG
* * * ** *
94461433 AGCCAGT-TAAGACCATCTCTGGGACATGGCATCGGC-ATTGAGACAAG
1 AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCTA-CGAGAGGAT
* * * * * * *
94461480 GGCTAGTGTAAGA-TATGT-TTGGAACAT-GCATTGGCCACGAGACG-T
1 AGCCAGTGTAAGACCATGTCTAGG-ACATGGCATCGGCTACGAGAGGAT
**
94461525 AAGCCAGTGTAAGA-CATGTCTAGGACAT-GCATTAGCTACGAGAGGAT
1 -AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCTACGAGAGGAT
* * * * *
94461572 AGTCAGTGTAAGACCATGTTTGGGACATGGCATCGGCT-TGAGA-TAT
1 AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCTACGAGAGGAT
* * *
94461618 GAGCCAGTGTAAGACCGTGTCTAGGACAAGGCACCGGC
1 -AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGC
94461656 ACCTTACCTT
Statistics
Matches: 138, Mismatches: 29, Indels: 18
0.75 0.16 0.10
Matches are distributed among these distances:
46 62 0.45
47 64 0.46
48 12 0.09
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (48 bp):
AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCTACGAGAGGAT
Found at i:94471303 original size:20 final size:23
Alignment explanation
Indices: 94471267--94471310 Score: 67
Period size: 21 Copynumber: 2.0 Consensus size: 23
94471257 GCTATATTAG
94471267 AAATGCTAACTAAAATGT-CTTA
1 AAATGCTAACTAAAATGTACTTA
94471289 AAATG-TAAC-AAAATGTACTTA
1 AAATGCTAACTAAAATGTACTTA
94471310 A
1 A
94471311 GTGCAAGCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 7 0.33
21 9 0.43
22 5 0.24
ACGTcount: A:0.50, C:0.11, G:0.09, T:0.30
Consensus pattern (23 bp):
AAATGCTAACTAAAATGTACTTA
Found at i:94478059 original size:29 final size:29
Alignment explanation
Indices: 94478027--94478100 Score: 94
Period size: 29 Copynumber: 2.6 Consensus size: 29
94478017 CTAAAGGATT
*
94478027 GCCTTTGTGGCGATCTCTGTTAAAAGGAA
1 GCCTTTGTGGCGATCTCTATTAAAAGGAA
* * *
94478056 GCCTTTATGGTGATCTCTATTATAAGGAA
1 GCCTTTGTGGCGATCTCTATTAAAAGGAA
* *
94478085 GCCCTTGTGACGATCT
1 GCCTTTGTGGCGATCT
94478101 GATCGACTAT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.34
Consensus pattern (29 bp):
GCCTTTGTGGCGATCTCTATTAAAAGGAA
Found at i:94479241 original size:20 final size:22
Alignment explanation
Indices: 94479208--94479247 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
94479198 TCAAGCAGCG
*
94479208 AAATTAATGCAATAAGATAGAA
1 AAATTAATGCAATAAAATAGAA
94479230 AAATTAA-G-AATAAAATAG
1 AAATTAATGCAATAAAATAG
94479248 TCTAGGATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 1 0.06
22 7 0.41
ACGTcount: A:0.62, C:0.03, G:0.12, T:0.23
Consensus pattern (22 bp):
AAATTAATGCAATAAAATAGAA
Found at i:94482658 original size:15 final size:15
Alignment explanation
Indices: 94482638--94482668 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
94482628 CTTGTCATGC
*
94482638 CATCGTTTGGTTTTT
1 CATCGTTTCGTTTTT
94482653 CATCGTTTCGTTTTT
1 CATCGTTTCGTTTTT
94482668 C
1 C
94482669 CTTGTAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.06, C:0.19, G:0.16, T:0.58
Consensus pattern (15 bp):
CATCGTTTCGTTTTT
Found at i:94489410 original size:17 final size:17
Alignment explanation
Indices: 94489363--94489414 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 17
94489353 ATCCAACAAA
94489363 GCCCGGTAAATGATAAT
1 GCCCGGTAAATGATAAT
** *
94489380 GCCTGCAATAAATGATATT
1 GCC--CGGTAAATGATAAT
94489399 GCCCGGTAAATGATAA
1 GCCCGGTAAATGATAA
94489415 ATGGTAAAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
17 13 0.48
19 14 0.52
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (17 bp):
GCCCGGTAAATGATAAT
Found at i:94495430 original size:29 final size:29
Alignment explanation
Indices: 94495396--94495481 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
94495386 GCGTTATGGG
94495396 TATCTCTGTGAAAATGATGCCTTTGTGGC
1 TATCTCTGTGAAAATGATGCCTTTGTGGC
* * *
94495425 TATCTCAGTG-AAATGA-GCATTGTTATGGC
1 TATCTCTGTGAAAATGATGC-CT-TTGTGGC
* *
94495454 TATCTCTGTTAAAAGGATGCCTTTGTGG
1 TATCTCTGTGAAAATGATGCCTTTGTGG
94495482 TTATTTTTAT
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
27 2 0.04
28 7 0.16
29 28 0.62
30 6 0.13
31 2 0.04
ACGTcount: A:0.23, C:0.15, G:0.24, T:0.37
Consensus pattern (29 bp):
TATCTCTGTGAAAATGATGCCTTTGTGGC
Found at i:94499692 original size:44 final size:43
Alignment explanation
Indices: 94499628--94499715 Score: 149
Period size: 44 Copynumber: 2.0 Consensus size: 43
94499618 GGCTAAGGTA
94499628 CGGTGCAGTACTGGATGACCCGCCCATCTTGAATCATGACACT
1 CGGTGCAGTACTGGATGACCCGCCCATCTTGAATCATGACACT
* *
94499671 CNGGTGCAGTACTGGATGACCCGCCCATCTTGAGTCATGCCACT
1 C-GGTGCAGTACTGGATGACCCGCCCATCTTGAATCATGACACT
94499715 C
1 C
94499716 TTTCATGACT
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
43 1 0.02
44 41 0.98
ACGTcount: A:0.20, C:0.32, G:0.24, T:0.23
Consensus pattern (43 bp):
CGGTGCAGTACTGGATGACCCGCCCATCTTGAATCATGACACT
Found at i:94503891 original size:106 final size:106
Alignment explanation
Indices: 94503760--94503970 Score: 377
Period size: 106 Copynumber: 2.0 Consensus size: 106
94503750 TAGGAAAAGT
*
94503760 CTGATGAGATAGCTCATTGCTATATGTTGGTAAACATGACCAACACTCAGTATAAACAAATAGAG
1 CTGATGAGATAGCTCATTGCTATATGTTGGCAAACATGACCAACACTCAGTATAAACAAATAGAG
*
94503825 AGCTATAAGACTGATAAAGTGATTCTAGATAAGCTAGAAGC
66 AGCTATAAGACTGATAAAGTGATTCCAGATAAGCTAGAAGC
* *
94503866 CTGATGAGATAGCTCATTGCTATATGTTGGCAAACATGACCAACACTCGGTATAATCAAATAGAG
1 CTGATGAGATAGCTCATTGCTATATGTTGGCAAACATGACCAACACTCAGTATAAACAAATAGAG
*
94503931 AGCTATAAGACTGCTAAAGTGATTCCAGATAAGCTAGAAG
66 AGCTATAAGACTGATAAAGTGATTCCAGATAAGCTAGAAG
94503971 ACATGTTCAG
Statistics
Matches: 100, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
106 100 1.00
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.25
Consensus pattern (106 bp):
CTGATGAGATAGCTCATTGCTATATGTTGGCAAACATGACCAACACTCAGTATAAACAAATAGAG
AGCTATAAGACTGATAAAGTGATTCCAGATAAGCTAGAAGC
Found at i:94505919 original size:16 final size:17
Alignment explanation
Indices: 94505888--94505920 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
94505878 AAACTCATTT
*
94505888 TTATTGTTTCTTAAAAA
1 TTATTGTATCTTAAAAA
94505905 TTATTGTAT-TTAAAAA
1 TTATTGTATCTTAAAAA
94505921 ATCCTTTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.52
Consensus pattern (17 bp):
TTATTGTATCTTAAAAA
Found at i:94506980 original size:37 final size:37
Alignment explanation
Indices: 94506875--94506981 Score: 126
Period size: 37 Copynumber: 2.9 Consensus size: 37
94506865 ATTTTCTGTA
* * *
94506875 GGCATGCTTTACATGCGAATCAAAATATCAAAAATAT
1 GGCATGCTTAACATGAGAATCAAAATATCAGAAATAT
** *
94506912 TACATGCTTAACATGCA-AATCAAAATTTCAGAAATAT
1 GGCATGCTTAACATG-AGAATCAAAATATCAGAAATAT
* *
94506949 GGCATGCTTAACATGAGAATTAGAATATCAGAA
1 GGCATGCTTAACATGAGAATCAAAATATCAGAA
94506982 TAGTAACATA
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
36 1 0.02
37 56 0.98
ACGTcount: A:0.44, C:0.15, G:0.14, T:0.27
Consensus pattern (37 bp):
GGCATGCTTAACATGAGAATCAAAATATCAGAAATAT
Found at i:94510563 original size:40 final size:40
Alignment explanation
Indices: 94510504--94510687 Score: 237
Period size: 40 Copynumber: 4.6 Consensus size: 40
94510494 TATTCGAATG
* *
94510504 ATATCCGGGCTAAGTTCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
* * * *
94510544 ATATCAGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
94510584 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
94510624 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
94510664 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
94510688 CTTGTGCGAG
Statistics
Matches: 124, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 121 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:94514217 original size:20 final size:20
Alignment explanation
Indices: 94514192--94514236 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
94514182 AGGGACTAAA
* *
94514192 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
94514212 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
94514232 ATGAA
1 ATGAA
94514237 TACATGCACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:94521587 original size:35 final size:35
Alignment explanation
Indices: 94521546--94521615 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
94521536 CCGTATACAG
*
94521546 GTTTGTGGTGGTATTTATAGATGATATTTTGGTTT
1 GTTTGTGGTGGTATTTATAGATGATATGTTGGTTT
*
94521581 GTTTGTGGTGGTATTTATTGATGATATGTTGGTTT
1 GTTTGTGGTGGTATTTATAGATGATATGTTGGTTT
94521616 ACTCTCAGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.16, C:0.00, G:0.30, T:0.54
Consensus pattern (35 bp):
GTTTGTGGTGGTATTTATAGATGATATGTTGGTTT
Found at i:94526314 original size:24 final size:22
Alignment explanation
Indices: 94526294--94526336 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
94526284 AAGAAAATGA
94526294 AGGAGAGAAAGGAGAGGAAAAT
1 AGGAGAGAAAGGAGAGGAAAAT
94526316 AGGAGAGAAAGGAGAGGAAAA
1 AGGAGAGAAAGGAGAGGAAAA
94526337 GAGCTCTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.42, T:0.02
Consensus pattern (22 bp):
AGGAGAGAAAGGAGAGGAAAAT
Found at i:94528651 original size:43 final size:43
Alignment explanation
Indices: 94528539--94528656 Score: 155
Period size: 43 Copynumber: 2.7 Consensus size: 43
94528529 TTATATTCAG
* * ** *
94528539 GCCTTCATGCCTAGCAGGCTTAGTGCCAGTGATGTGTATTCGG
1 GCCTTCGTGCCTAGCAGGCTTAATGCTGGTGATGTGTATTCGA
* * *
94528582 GCCTTCGGGCCTAGCAGGCTTCATGCTGGTGATGTGTATTCTA
1 GCCTTCGTGCCTAGCAGGCTTAATGCTGGTGATGTGTATTCGA
*
94528625 GCCTTCGTGCCTAGCAGGCGTAATGCTGGTGA
1 GCCTTCGTGCCTAGCAGGCTTAATGCTGGTGA
94528657 AATGATATGT
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 64 1.00
ACGTcount: A:0.15, C:0.24, G:0.31, T:0.30
Consensus pattern (43 bp):
GCCTTCGTGCCTAGCAGGCTTAATGCTGGTGATGTGTATTCGA
Found at i:94529033 original size:45 final size:42
Alignment explanation
Indices: 94528963--94529073 Score: 125
Period size: 45 Copynumber: 2.5 Consensus size: 42
94528953 TTGTTGACTT
* * *
94528963 AATTATTCGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTG
1 AATTATTCGGGCCTTCGAGCCTAGCAAACTATAATACCGGTG
**
94529005 AGATACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATACCGGTG
1 A-AT--TATTCGGGCCTTCGAGCCTAGCAAACTATAATACCGGTG
94529050 AATTGATATCGGGCC-TCGAGCCTA
1 AATT-AT-TCGGGCCTTCGAGCCTA
94529074 ACAGGTGAAA
Statistics
Matches: 59, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
42 2 0.03
43 13 0.22
44 9 0.15
45 35 0.59
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (42 bp):
AATTATTCGGGCCTTCGAGCCTAGCAAACTATAATACCGGTG
Found at i:94530625 original size:39 final size:40
Alignment explanation
Indices: 94530571--94530655 Score: 145
Period size: 39 Copynumber: 2.1 Consensus size: 40
94530561 TCCTTTTTTA
94530571 TTCTTTTAATTACCAAATGACAAAAATGCCCTTAGGGTC-
1 TTCTTTTAATTACCAAATGACAAAAATGCCCTTAGGGTCT
* *
94530610 TTCTTTTAATTACCAAATGACCAAAATGCCTTTAGGGTCT
1 TTCTTTTAATTACCAAATGACAAAAATGCCCTTAGGGTCT
94530650 TTCTTT
1 TTCTTT
94530656 AAAATTTTTC
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
39 37 0.86
40 6 0.14
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.39
Consensus pattern (40 bp):
TTCTTTTAATTACCAAATGACAAAAATGCCCTTAGGGTCT
Found at i:94531209 original size:20 final size:20
Alignment explanation
Indices: 94531184--94531222 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
94531174 AGGGACTAAA
* *
94531184 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
94531204 ATGAAAAATTCTAAAATTT
1 ATGAAAAATTCTAAAATTT
94531223 TATAAATATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.03, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:94534198 original size:27 final size:27
Alignment explanation
Indices: 94534147--94534247 Score: 112
Period size: 27 Copynumber: 3.7 Consensus size: 27
94534137 CTCATATCTG
* * * *
94534147 TAGGCTAGTATTATTGAAATACCCCTA
1 TAGGATAGAATTACTGAAATGCCCCTA
*
94534174 TAGCATAGAATTACTGAAATGCCCCTA
1 TAGGATAGAATTACTGAAATGCCCCTA
* ** *
94534201 TAGGATAGAATTATTGAAATGTACCTG
1 TAGGATAGAATTACTGAAATGCCCCTA
*
94534228 TAGGGTAGAATTACTGAAAT
1 TAGGATAGAATTACTGAAAT
94534248 ACCCTTGGTT
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 62 1.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (27 bp):
TAGGATAGAATTACTGAAATGCCCCTA
Found at i:94534266 original size:27 final size:27
Alignment explanation
Indices: 94534236--94534583 Score: 244
Period size: 27 Copynumber: 12.9 Consensus size: 27
94534226 TGTAGGGTAG
* *
94534236 AATTACTGAAATACCCTTGGTTTACAA
1 AATTACTGAAATACCCTTGATTTGCAA
* *
94534263 AATTACTG-AATACCCTTGGTTTACAA
1 AATTACTGAAATACCCTTGATTTGCAA
** *
94534289 AATTACCAAAATACCCTCT-ATTAGCAA
1 AATTACTGAAATACCCT-TGATTTGCAA
** * *
94534316 AATTACAAAAATACCCTTGGTTTGTAA
1 AATTACTGAAATACCCTTGATTTGCAA
** *
94534343 AATTACCAAAATACCCTTGATTTGTAA
1 AATTACTGAAATACCCTTGATTTGCAA
* * * ***
94534370 AATTA-TCAAAATACCTTTAATTTTTGA
1 AATTACT-GAAATACCCTTGATTTGCAA
* *
94534397 AATTA-TCGAAATACCCTCGATTTGTAA
1 AATTACT-GAAATACCCTTGATTTGCAA
*
94534424 AATTA-TCGAAATACCCTTGATTTGGAA
1 AATTACT-GAAATACCCTTGATTTGCAA
* * *
94534451 AATTATTGAAATACCTTTGATTTGGAA
1 AATTACTGAAATACCCTTGATTTGCAA
* *
94534478 AATTA-TAGAAATACCCCTGATTTACAA
1 AATTACT-GAAATACCCTTGATTTGCAA
**
94534505 AATTACAAAAATACCCTTGACTTT-CAAA
1 AATTACTGAAATACCCTTGA-TTTGC-AA
* * *
94534533 AATTA-TAGAAATACCATTGGTTTGGAA
1 AATTACT-GAAATACCCTTGATTTGCAA
* * *
94534560 AATTACCGAGATACCCTTGGTTTG
1 AATTACTGAAATACCCTTGATTTG
94534584 TAGATTTACC
Statistics
Matches: 269, Mismatches: 40, Indels: 24
0.81 0.12 0.07
Matches are distributed among these distances:
26 26 0.10
27 221 0.82
28 22 0.08
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.34
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGATTTGCAA
Found at i:94534347 original size:54 final size:54
Alignment explanation
Indices: 94534244--94534583 Score: 276
Period size: 54 Copynumber: 6.3 Consensus size: 54
94534234 AGAATTACTG
* * * * *
94534244 AAATACCCTTGGTTTACAAAATTACTG-AATACCCTTGGTTTACAAAATTACCA
1 AAATACCCTTGATTTGCAAAATTACAGAAATACCCTTGATTTGCAAAATTACCA
* * * *
94534297 AAATACCCTCT-ATTAGCAAAATTACAAAAATACCCTTGGTTTGTAAAATTACCA
1 AAATACCCT-TGATTTGCAAAATTACAGAAATACCCTTGATTTGCAAAATTACCA
* * * *** * *
94534351 AAATACCCTTGATTTGTAAAATTATCA-AAATACCTTTAATTTTTGAAATTATCG
1 AAATACCCTTGATTTGCAAAATTA-CAGAAATACCCTTGATTTGCAAAATTACCA
* * * ***
94534405 AAATACCCTCGATTTGTAAAATTATC-GAAATACCCTTGATTTGGAAAATTATTG
1 AAATACCCTTGATTTGCAAAATTA-CAGAAATACCCTTGATTTGCAAAATTACCA
* * * * * *
94534459 AAATACCTTTGATTTGGAAAATTATAGAAATACCCCTGATTTACAAAATTACAA
1 AAATACCCTTGATTTGCAAAATTACAGAAATACCCTTGATTTGCAAAATTACCA
* * * * *
94534513 AAATACCCTTGACTTT-CAAAAATTATAGAAATACCATTGGTTTGGAAAATTACCG
1 AAATACCCTTGA-TTTGC-AAAATTACAGAAATACCCTTGATTTGCAAAATTACCA
* *
94534568 AGATACCCTTGGTTTG
1 AAATACCCTTGATTTG
94534584 TAGATTTACC
Statistics
Matches: 234, Mismatches: 44, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
53 21 0.09
54 168 0.72
55 45 0.19
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.34
Consensus pattern (54 bp):
AAATACCCTTGATTTGCAAAATTACAGAAATACCCTTGATTTGCAAAATTACCA
Found at i:94534400 original size:81 final size:81
Alignment explanation
Indices: 94534236--94534605 Score: 304
Period size: 81 Copynumber: 4.6 Consensus size: 81
94534226 TGTAGGGTAG
* ** ** * *
94534236 AATTACTGAAATACCCTTGGTTTACAAAATTA-CTGAATACCCTTGGTTT-ACAAAATTACCAAA
1 AATTACAGAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGATTTGA-AAAATTATCAAA
* * *
94534299 ATACCCTCTA-TTAGCAA
65 ATA-CCTTTATTTTGGAA
* *
94534316 AATTACAAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATTATCAAAA
1 AATTACAGAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGATTTGAAAAATTATCAAAA
*
94534381 TACCTTTAATTTTTG-A
66 TACCTTT-ATTTTGGAA
* * * * * **
94534397 AATTATC-GAAATACCCTCGATTTGTAAAATTATCGAAATACCCTTGATTTGGAAAATTATTGAA
1 AATTA-CAGAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGATTTGAAAAATTATCAAA
94534461 ATACCTTTGA-TTTGGAA
65 ATACCTTT-ATTTTGGAA
* * * ** * *
94534478 AATTATAGAAATACCCCTGATTTACAAAATTACAAAAATACCCTTGACTTTCAAAAATTAT-AGA
1 AATTACAGAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGA-TTTGAAAAATTATCA-A
* **
94534542 AATACCATTGGTTTGGAA
64 AATACCTTTATTTTGGAA
* * * * * *
94534560 AATTACCGAGATACCCTTGGTTTGTAGATTTACCAATACACCCTTG
1 AATTACAGAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTG
94534606 TAGGGTGAAA
Statistics
Matches: 232, Mismatches: 48, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
80 36 0.16
81 132 0.57
82 64 0.28
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.34
Consensus pattern (81 bp):
AATTACAGAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGATTTGAAAAATTATCAAAA
TACCTTTATTTTGGAA
Found at i:94534891 original size:41 final size:41
Alignment explanation
Indices: 94534834--94534955 Score: 172
Period size: 41 Copynumber: 3.0 Consensus size: 41
94534824 GAAGGAAGAA
* *
94534834 ATTGAGAATCGCATGGTTACTTGACGATCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGATCGTGGATCCACCG
*
94534875 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGATCGTGGATCCACCG
* * * * *
94534916 ATTAAGGATTGTATGGTTGCTTGACGTTTGTGGATCCACC
1 ATTGAGGATCGCATGGTTGCTTGACGATCGTGGATCCACC
94534956 TGTGGCTTTT
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 72 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGATCGTGGATCCACCG
Found at i:94535150 original size:22 final size:22
Alignment explanation
Indices: 94535097--94535162 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 22
94535087 AGGAAATTAT
* * *
94535097 CCTGATTATGGCTTTGCGACAA
1 CCTGATTATGGCTCTGTGCCAA
*
94535119 CCT-ACATATGGCTCTGTGCCAA
1 CCTGA-TTATGGCTCTGTGCCAA
* *
94535141 CCTGATTATGGTTGTGTGCCAA
1 CCTGATTATGGCTCTGTGCCAA
94535163 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.32
Consensus pattern (22 bp):
CCTGATTATGGCTCTGTGCCAA
Found at i:94535382 original size:22 final size:22
Alignment explanation
Indices: 94535357--94535405 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
94535347 TGCTGTGATG
94535357 TTTACGGCT-ATGTGCTGTCCTA
1 TTTACGG-TGATGTGCTGTCCTA
*
94535379 TTTACGGTGATGTGCTGTCCTG
1 TTTACGGTGATGTGCTGTCCTA
94535401 TTTAC
1 TTTAC
94535406 AGCCTTGAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 1 0.04
22 24 0.96
ACGTcount: A:0.12, C:0.20, G:0.24, T:0.43
Consensus pattern (22 bp):
TTTACGGTGATGTGCTGTCCTA
Found at i:94536299 original size:13 final size:13
Alignment explanation
Indices: 94536281--94536305 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
94536271 CAAAGTTTGT
94536281 AAAGAAATGATGA
1 AAAGAAATGATGA
94536294 AAAGAAATGATG
1 AAAGAAATGATG
94536306 GAAATCCAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.24, T:0.16
Consensus pattern (13 bp):
AAAGAAATGATGA
Found at i:94539519 original size:45 final size:44
Alignment explanation
Indices: 94539450--94539846 Score: 266
Period size: 45 Copynumber: 8.8 Consensus size: 44
94539440 GATCGGAGGG
* * * *
94539450 TGCCATGGTGTCTTTCAACTATGGTCTTATTTATTCTTAACTTGA
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATT-TTATCGTGA
* *
94539495 TGCCATAGTGTCTTTCAACCATGGTCTTATTCATTTTCCATCGTGT
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTT--ATCGTGA
* * *
94539541 TGCCATAGTGTCTTTCAATTATTGTCTTATTCATTTTCCTTCAGT--
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTT--ATC-GTGA
* *
94539586 TGCCATAGTGTCTTCCAACTATGGTCTTATTCATTTGATTCGTGA
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTA-TCGTGA
* * ** * *** *
94539631 TGCCATAGTGTCTTTTAGCTACAGTCTTACTCGATAAAATTGTGA
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTC-ATTTTATCGTGA
* * ** * ***
94539676 TGCCATACTATCTTTCAGTTATGGTCTTACTTGATAGAATCGTGA
1 TGCCATAGTGTCTTTCAACTATGGTCTTA-TTCATTTTATCGTGA
** * * * * *
94539721 TGCCATAACGCCTTTCAACTATGGTCTTACTC-GTTTCTGGT-A
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTATCGTGA
* * *
94539763 TGGTTCCATAGTGTCTTTCAACTATGGTCTTATTTA-TTT-CCGGTATA
1 T-G--CCATAGTGTCTTTCAACTATGGTCTTATTCATTTTATC-GT-GA
*
94539810 GTGCCATAGTGTCTTTCAACTATGGTCTTAATCATTT
1 -TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTT
94539847 CCTTCAAGCC
Statistics
Matches: 277, Mismatches: 58, Indels: 33
0.75 0.16 0.09
Matches are distributed among these distances:
42 2 0.01
43 6 0.02
44 5 0.02
45 211 0.76
46 48 0.17
47 4 0.01
48 1 0.00
ACGTcount: A:0.21, C:0.20, G:0.16, T:0.43
Consensus pattern (44 bp):
TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTATCGTGA
Found at i:94539610 original size:91 final size:90
Alignment explanation
Indices: 94539450--94539645 Score: 245
Period size: 91 Copynumber: 2.2 Consensus size: 90
94539440 GATCGGAGGG
* * *
94539450 TGCCATGGTGTCTTTCAACTATGGTCTTATTTATTCTTAACTTGATGCCATAGTGTCTTTCAACC
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTCTTAACTTGATGCCATAGTGTCTTCCAACC
*
94539515 ATGGTCTTATTCATTTTCCA-TCGTGT
66 ATGGTCTTATTCA-TTT-CATTCGTGA
* * * *
94539541 TGCCATAGTGTCTTTCAATTATTGTCTTATTCATT-TT-CCTTCAGTTGCCATAGTGTCTTCCAA
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTCTTAACTT--GATGCCATAGTGTCTTCCAA
* *
94539604 CTATGGTCTTATTCATTTGATTCGTGA
64 CCATGGTCTTATTCATTTCATTCGTGA
94539631 TGCCATAGTGTCTTT
1 TGCCATAGTGTCTTT
94539646 TAGCTACAGT
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
89 4 0.04
90 25 0.27
91 63 0.68
ACGTcount: A:0.18, C:0.20, G:0.15, T:0.46
Consensus pattern (90 bp):
TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTCTTAACTTGATGCCATAGTGTCTTCCAACC
ATGGTCTTATTCATTTCATTCGTGA
Found at i:94541448 original size:27 final size:27
Alignment explanation
Indices: 94541402--94541453 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
94541392 CTTTAGGGCA
**
94541402 AACCTTTTAAAGGATGCCTTCGTGGTG
1 AACCTTTTAAAGGACACCTTCGTGGTG
*
94541429 AACCTTTTAAAGGACACCTTTGTGG
1 AACCTTTTAAAGGACACCTTCGTGG
94541454 CGAAACGCTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (27 bp):
AACCTTTTAAAGGACACCTTCGTGGTG
Found at i:94541467 original size:27 final size:27
Alignment explanation
Indices: 94541437--94541505 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 27
94541427 TGAACCTTTT
*
94541437 AAAGGACACCTTTGTGGCG-AAACGCTG
1 AAAGGAAACCTTTGTGG-GAAAACGCTG
*
94541464 AAAGGAAAACCTTTGTGGGAAAATGCTG
1 AAAGG-AAACCTTTGTGGGAAAACGCTG
94541492 AAAGGAAAACCTTT
1 AAAGG-AAACCTTT
94541506 ATGGCCAGTA
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 6 0.16
28 32 0.84
ACGTcount: A:0.38, C:0.16, G:0.26, T:0.20
Consensus pattern (27 bp):
AAAGGAAACCTTTGTGGGAAAACGCTG
Found at i:94541480 original size:28 final size:29
Alignment explanation
Indices: 94541444--94541510 Score: 102
Period size: 28 Copynumber: 2.4 Consensus size: 29
94541434 TTTAAAGGAC
94541444 ACCTTTGTGGCG-AAACGCTGAAAGGAAA
1 ACCTTTGTGGCGAAAACGCTGAAAGGAAA
*
94541472 ACCTTTGTGG-GAAAATGCTGAAAGGAAA
1 ACCTTTGTGGCGAAAACGCTGAAAGGAAA
*
94541500 ACCTTTATGGC
1 ACCTTTGTGGC
94541511 CAGTACTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.34, C:0.16, G:0.27, T:0.22
Consensus pattern (29 bp):
ACCTTTGTGGCGAAAACGCTGAAAGGAAA
Found at i:94546881 original size:30 final size:30
Alignment explanation
Indices: 94546847--94546908 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
94546837 ACTAAACTTA
94546847 ATTATCTAATAATCTAAGAACGCGACAGAG
1 ATTATCTAATAATCTAAGAACGCGACAGAG
94546877 ATTATCTAATAATCTAAGAACGCGACAGAG
1 ATTATCTAATAATCTAAGAACGCGACAGAG
94546907 AT
1 AT
94546909 AAAAGAATCG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.44, C:0.16, G:0.16, T:0.24
Consensus pattern (30 bp):
ATTATCTAATAATCTAAGAACGCGACAGAG
Found at i:94549375 original size:40 final size:40
Alignment explanation
Indices: 94549329--94549533 Score: 177
Period size: 40 Copynumber: 5.1 Consensus size: 40
94549319 CAGGATTTAA
* *
94549329 CCGGATATAGCT-ACTCACTCGAATACCTTCGGGACATAGC
1 CCGGATATAG-TAACTCACACAAATACCTTCGGGACATAGC
* * *
94549369 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCACACAAATACCTTCGGGACATAGC
* ** * *
94549409 CC-GAAACTAGTAACTCGTACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCACACAAATACCTTCGGGACATAGC
* * *
94549449 CCGGA-ACTAGTAACTCGCACAACTGA-CTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCACACAAAT-ACCTTCGGGACATAGC
* * * *
94549489 CCGGA-ACTAGTAACTCGCACAAATGCCTTCGGAACTTAGC
1 CCGGATA-TAGTAACTCACACAAATACCTTCGGGACATAGC
94549529 CCGGA
1 CCGGA
94549534 ACTAGTCACT
Statistics
Matches: 147, Mismatches: 13, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
39 4 0.03
40 141 0.96
41 2 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (40 bp):
CCGGATATAGTAACTCACACAAATACCTTCGGGACATAGC
Found at i:94549534 original size:40 final size:40
Alignment explanation
Indices: 94549354--94549573 Score: 327
Period size: 40 Copynumber: 5.5 Consensus size: 40
94549344 CACTCGAATA
*
94549354 CCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-ACTAGTAACTCGCACAAATG
* *
94549394 CCTTCGGGACTTAGCCCGAAACTAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
*
94549434 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAACTG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
*
94549474 ACTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
* *
94549514 CCTTCGGAACTTAGCCCGGAACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACT--CGCACAAATG
*
94549555 CCTTCGAGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
94549574 TTATCATCCA
Statistics
Matches: 164, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 1 0.01
40 137 0.84
41 22 0.13
42 4 0.02
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
Found at i:94557541 original size:40 final size:40
Alignment explanation
Indices: 94557471--94557649 Score: 197
Period size: 40 Copynumber: 4.5 Consensus size: 40
94557461 AAGCCAAGTA
* * * * *
94557471 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
94557510 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
94557550 CTTTCGGGACTTAGCCCGGA-ACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
94557590 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
*
94557631 CCTTCGAGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
94557650 TTATCATCCA
Statistics
Matches: 124, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
39 13 0.10
40 84 0.68
41 23 0.19
42 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:94557642 original size:41 final size:40
Alignment explanation
Indices: 94557510--94557649 Score: 203
Period size: 40 Copynumber: 3.5 Consensus size: 40
94557500 CGCTCGAATA
*
94557510 CCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-ACTAGTAACTCGCACAAATG
*
94557550 CTTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
*
94557590 CCTTCGGGACTTAGCCCGGAACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACT--CGCACAAATG
*
94557631 CCTTCGAGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
94557650 TTATCATCCA
Statistics
Matches: 92, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
39 1 0.01
40 64 0.70
41 23 0.25
42 4 0.04
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
Found at i:94557856 original size:158 final size:158
Alignment explanation
Indices: 94557568--94557883 Score: 605
Period size: 158 Copynumber: 2.0 Consensus size: 158
94557558 ACTTAGCCCG
*
94557568 GAACTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTCACTAGCGCAAAATGCC
1 GAACTAGTAACTCGCAAAAATGCCTTCGGGACTTAGCCCGGAACTAGTCACTAGCGCAAAATGCC
94557633 TTCGAGACTTAGCCCGGTTATCATCCAAATATTCATGCACATATCAATAAATCATGACACATCTA
66 TTCGAGACTTAGCCCGGTTATCATCCAAATATTCATGCACATATCAATAAATCATGACACATCTA
94557698 TATTTCATTTTCATAATTAGAGTTCAAA
131 TATTTCATTTTCATAATTAGAGTTCAAA
*
94557726 GAACTAGTAACTCGCAAAAATGCCTTCGGGACTTAGCCTGGAACTAGTCACTAGCGCAAAATGCC
1 GAACTAGTAACTCGCAAAAATGCCTTCGGGACTTAGCCCGGAACTAGTCACTAGCGCAAAATGCC
*
94557791 TTCGGGACTTAGCCCGGTTATCATCCAAATATTCATGCACATATCAATAAATCATGACACATCTA
66 TTCGAGACTTAGCCCGGTTATCATCCAAATATTCATGCACATATCAATAAATCATGACACATCTA
94557856 TATTTCATTTTCATAATTAGAGTTCAAA
131 TATTTCATTTTCATAATTAGAGTTCAAA
94557884 CACAAGTCAC
Statistics
Matches: 155, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
158 155 1.00
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (158 bp):
GAACTAGTAACTCGCAAAAATGCCTTCGGGACTTAGCCCGGAACTAGTCACTAGCGCAAAATGCC
TTCGAGACTTAGCCCGGTTATCATCCAAATATTCATGCACATATCAATAAATCATGACACATCTA
TATTTCATTTTCATAATTAGAGTTCAAA
Found at i:94558124 original size:49 final size:49
Alignment explanation
Indices: 94558067--94558161 Score: 163
Period size: 49 Copynumber: 1.9 Consensus size: 49
94558057 TATGCTCATA
*
94558067 TGTCATGACTCAATCAAATCGTATACTAAGTCTCGTTACTCGAAAACTT
1 TGTCATGACTCAATCAAATCGTAAACTAAGTCTCGTTACTCGAAAACTT
* *
94558116 TGTCATGACTTAATCAAATTGTAAACTAAGTCTCGTTACTCGAAAA
1 TGTCATGACTCAATCAAATCGTAAACTAAGTCTCGTTACTCGAAAA
94558162 TTTACTTCGG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.35, C:0.20, G:0.13, T:0.33
Consensus pattern (49 bp):
TGTCATGACTCAATCAAATCGTAAACTAAGTCTCGTTACTCGAAAACTT
Found at i:94564240 original size:25 final size:24
Alignment explanation
Indices: 94564212--94564259 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 24
94564202 TCTAACCATT
94564212 TAAT-CATATTATATAATTTAATAAG
1 TAATACATATTA-AT-ATTTAATAAG
94564237 TAATCACATATTAATATTTAATA
1 TAAT-ACATATTAATATTTAATA
94564260 CATTGCACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
25 12 0.57
26 2 0.10
27 7 0.33
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (24 bp):
TAATACATATTAATATTTAATAAG
Found at i:94573322 original size:22 final size:22
Alignment explanation
Indices: 94573288--94573352 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
94573278 GCAAATACAT
*
94573288 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* * *
94573310 TTGGCATAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
94573332 TTGGCGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
94573353 AATAGTTGGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:94573551 original size:41 final size:41
Alignment explanation
Indices: 94573493--94573611 Score: 175
Period size: 41 Copynumber: 2.9 Consensus size: 41
94573483 TTCAAAGACA
*
94573493 CGGTGGATCCACGGTCGTCAAGCAACCCTACGATCCTTAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATACGATCCTTAAT
* * *
94573534 CGGTGGATCCACAGTCGTCAAGCAACCATGCGATCTTTAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATACGATCCTTAAT
** *
94573575 CACTGGATCCACGGTCGTCAAGCAACCATTCGATCCT
1 CGGTGGATCCACGGTCGTCAAGCAACCATACGATCCT
94573612 CAATTTCTTC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 69 1.00
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.23
Consensus pattern (41 bp):
CGGTGGATCCACGGTCGTCAAGCAACCATACGATCCTTAAT
Found at i:94573943 original size:55 final size:53
Alignment explanation
Indices: 94573880--94574144 Score: 194
Period size: 54 Copynumber: 4.9 Consensus size: 53
94573870 ATCTACAAGC
* **
94573880 CAAGGGTATTTCGGTAATTTCGCAAACCAATGGTATTTTTGTAATTTTTTAAAGT
1 CAAGGGTATTTCGGTAATTTCGCAAATCAA-GGTATTTTTGTAATTTTACAAA-T
* * * * * *
94573935 TAAGGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTCTGTAA-TTTACCAAAT
1 CAAGGGTATTTCGGTAATTTCGCAAATCA-AGGTATTTTTGTAATTTTA-CAAAT
* * *
94573989 CAAGGGTATTTTGCTAAATTTC-CAAATCAGAGGTATTTTAGTAATTTTACAAAT
1 CAAGGGTATTTCGGT-AATTTCGCAAATCA-AGGTATTTTTGTAATTTTACAAAT
* * * * *** * *
94574043 CGAGGGTATTTCGATAATTTCACAAATTAAGGATATTTCAATAATTTCATAAA-
1 CAAGGGTATTTCGGTAATTTCGCAAATCAAGG-TATTTTTGTAATTTTACAAAT
* * * * *
94574096 CTAGGGGTATTTTGGTAATTTTGCTAATCAAGTGTATTTTGGTAATTTT
1 C-AAGGGTATTTCGGTAATTTCGCAAATCAAG-GTATTTTTGTAATTTT
94574145 GTAAACCAAG
Statistics
Matches: 164, Mismatches: 38, Indels: 17
0.75 0.17 0.08
Matches are distributed among these distances:
53 10 0.06
54 105 0.64
55 49 0.30
ACGTcount: A:0.31, C:0.10, G:0.17, T:0.42
Consensus pattern (53 bp):
CAAGGGTATTTCGGTAATTTCGCAAATCAAGGTATTTTTGTAATTTTACAAAT
Found at i:94573945 original size:28 final size:27
Alignment explanation
Indices: 94573880--94574195 Score: 164
Period size: 27 Copynumber: 11.7 Consensus size: 27
94573870 ATCTACAAGC
* * * *
94573880 CAAGGGTATTTCGGTAATTTCGCAAAC
1 CAAGGGTATTTCTGTAATTTTGTAAAT
* * *
94573907 CAATGGTATTTTTGTAATTTTTTAAAGT
1 CAAGGGTATTTCTGTAATTTTGTAAA-T
*
94573935 TAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCTGTAATTTTGTAAAT
* ***
94573962 CAGGGGTATTTCTGTAATTTACCAAAT
1 CAAGGGTATTTCTGTAATTTTGTAAAT
* **
94573989 CAAGGGTATTT-TGCTAAATTTCCAAAT
1 CAAGGGTATTTCTG-TAATTTTGTAAAT
**
94574016 C-AGAGGTATTT-TAGTAATTTTACAAAT
1 CAAG-GGTATTTCT-GTAATTTTGTAAAT
* ***
94574043 CGAGGGTATTTC-GATAATTTCACAAAT
1 CAAGGGTATTTCTG-TAATTTTGTAAAT
* * ** **
94574070 TAAGGATATTTCAATAATTTCATAAA-
1 CAAGGGTATTTCTGTAATTTTGTAAAT
*
94574096 CTAGGGGTATTT-TGGTAATTTTGCT-AAT
1 C-AAGGGTATTTCT-GTAATTTTG-TAAAT
* *
94574124 CAAGTGTATTT-TGGTAATTTTGTAAAC
1 CAAGGGTATTTCT-GTAATTTTGTAAAT
* * * *
94574151 CAAGGCTA-TTCAGTAATTTTCTAAAC
1 CAAGGGTATTTCTGTAATTTTGTAAAT
* *
94574177 CAAGGATATTTCAGTAATT
1 CAAGGGTATTTCTGTAATT
94574196 CTACCATACA
Statistics
Matches: 232, Mismatches: 42, Indels: 30
0.76 0.14 0.10
Matches are distributed among these distances:
26 28 0.12
27 177 0.76
28 27 0.12
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTCTGTAATTTTGTAAAT
Found at i:94574214 original size:27 final size:27
Alignment explanation
Indices: 94574184--94574248 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
94574174 AACCAAGGAT
*
94574184 ATTTCAGTAATTCTACCATACAGGGGC
1 ATTTCAGTAATTATACCATACAGGGGC
* *
94574211 ATTTCAGTAATTATACCCTATAGGGGC
1 ATTTCAGTAATTATACCATACAGGGGC
*
94574238 AATTCAGTAAT
1 ATTTCAGTAAT
94574249 ACTAGCCTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Consensus pattern (27 bp):
ATTTCAGTAATTATACCATACAGGGGC
Found at i:94574257 original size:27 final size:26
Alignment explanation
Indices: 94574186--94574260 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 26
94574176 CCAAGGATAT
* * *
94574186 TTCAGTAATTCTACCATACAGGGGCAT
1 TTCAGTAATACTACC-TATAGGGGCAA
94574213 TTCAGTAATTA-TACCCTATAGGGGCAA
1 TTCAGTAA-TACTA-CCTATAGGGGCAA
94574240 TTCAGTAATACTAGCCTATAG
1 TTCAGTAATACTA-CCTATAG
94574261 ATATGAGATT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
26 2 0.05
27 36 0.88
28 3 0.07
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (26 bp):
TTCAGTAATACTACCTATAGGGGCAA
Found at i:94577431 original size:41 final size:41
Alignment explanation
Indices: 94577373--94577450 Score: 138
Period size: 41 Copynumber: 1.9 Consensus size: 41
94577363 TAAAAGCCAC
* *
94577373 CGGTGGATCCACGGTCGTCAAGTAACCATGCGATCCTTAAT
1 CGGTGGATCCACAGTCGTCAAGCAACCATGCGATCCTTAAT
94577414 CGGTGGATCCACAGTCGTCAAGCAACCATGCGATCCT
1 CGGTGGATCCACAGTCGTCAAGCAACCATGCGATCCT
94577451 CAATTTCTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.22
Consensus pattern (41 bp):
CGGTGGATCCACAGTCGTCAAGCAACCATGCGATCCTTAAT
Found at i:94577744 original size:27 final size:27
Alignment explanation
Indices: 94577714--94578007 Score: 168
Period size: 27 Copynumber: 10.9 Consensus size: 27
94577704 GGTAAATCTA
*
94577714 CAAACTAAGGGTTTTTCGGTAATTTTG
1 CAAACTAAGGGTATTTCGGTAATTTTG
* * *
94577741 CAAACCAATGGTATTTCTGTAATTTTTG
1 CAAACTAAGGGTATTTCGGTAA-TTTTG
* * *
94577769 -AAAGTCAAGGATATTTCTGTAATTTTG
1 CAAACT-AAGGGTATTTCGGTAATTTTG
* * * * *
94577796 TAAATTAGGGGTATTTCTGTAATTTTC
1 CAAACTAAGGGTATTTCGGTAATTTTG
* *
94577823 CAAA-TCAAGGGTATTTAGATAATTTT-
1 CAAACT-AAGGGTATTTCGGTAATTTTG
* * *
94577849 CTAAATTAGGGGTATTTTGGTAATTTTAG
1 C-AAACTAAGGGTATTTCGGTAATTTT-G
* * * ** *
94577878 -GAATTGAGGGTATTTTAGTAATTTTA
1 CAAACTAAGGGTATTTCGGTAATTTTG
* *
94577904 CAAA-TCATGGGTATTTCGGTAATTTTA
1 CAAACT-AAGGGTATTTCGGTAATTTTG
* * * *
94577931 CAAACCAGGGGTATTTTGGTGATTTTG
1 CAAACTAAGGGTATTTCGGTAATTTTG
* * * *
94577958 CTAATTGAGGGTATTTTGGTAATTTTG
1 CAAACTAAGGGTATTTCGGTAATTTTG
* * *
94577985 TAAACCAAGGGTA-TTCAGTAATT
1 CAAACTAAGGGTATTTCGGTAATT
94578008 ATACCCTACA
Statistics
Matches: 208, Mismatches: 48, Indels: 23
0.75 0.17 0.08
Matches are distributed among these distances:
26 11 0.05
27 173 0.83
28 24 0.12
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (27 bp):
CAAACTAAGGGTATTTCGGTAATTTTG
Found at i:94577854 original size:54 final size:54
Alignment explanation
Indices: 94577750--94578007 Score: 197
Period size: 54 Copynumber: 4.8 Consensus size: 54
94577740 GCAAACCAAT
** * * *
94577750 GGTATTTCTGTAATTTTTGAAAGTCAAGGATATTTCTGTAATTTT-GTAAATTAGG
1 GGTATTTCTGTAATTTTACAAA-TCAAGGGTATTT-AGTAATTTTACTAAATTAGG
*
94577805 GGTATTTCTGTAATTTTCCAAATCAAGGGTATTTAGATAATTTT-CTAAATTAGG
1 GGTATTTCTGTAATTTTACAAATCAAGGGTATTTAG-TAATTTTACTAAATTAGG
** ** * *
94577859 GGTATTT-TGGTAATTTTAGGAATTGAGGGTATTTTAGTAATTTTAC-AAATCATG
1 GGTATTTCT-GTAATTTTACAAATCAAGGGTA-TTTAGTAATTTTACTAAATTAGG
* * * * * *
94577913 GGTATTTCGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTGCT-AATT-GAG
1 GGTATTTCTGTAATTTTACAAATCAAGGGTA-TTTAGTAATTTTACTAAATTAG-G
** * *
94577967 GGTATTT-TGGTAATTTTGTAAACCAAGGGTATTCAGTAATT
1 GGTATTTCT-GTAATTTTACAAATCAAGGGTATTTAGTAATT
94578008 ATACCCTACA
Statistics
Matches: 164, Mismatches: 31, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
53 9 0.05
54 129 0.79
55 26 0.16
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (54 bp):
GGTATTTCTGTAATTTTACAAATCAAGGGTATTTAGTAATTTTACTAAATTAGG
Found at i:94577899 original size:81 final size:79
Alignment explanation
Indices: 94577787--94578007 Score: 232
Period size: 81 Copynumber: 2.7 Consensus size: 79
94577777 GGATATTTCT
** *
94577787 GTAATTTTGTAAATT-AGGGGTATTTCTGTAATTTTCCAAATCAAGGGTATTTAGATAATTTT-C
1 GTAATTTTGCGAATTGA-GGGTATTT-TGTAATTTTACAAATCAAGGGTATTTAG-TAATTTTAC
**
94577850 TAAATTAGGGGTATTTTG
63 -AAACCAGGGGTATTTTG
* *
94577868 GTAATTTTAG-GAATTGAGGGTATTTTAGTAATTTTACAAATCATGGGTATTTCGGTAATTTTAC
1 GTAATTTT-GCGAATTGAGGGTATTTT-GTAATTTTACAAATCAAGGGTATTT-AGTAATTTTAC
94577932 AAACCAGGGGTATTTTG
63 AAACCAGGGGTATTTTG
* * ** * *
94577949 GTGATTTTGCTAATTGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTCAGTAATT
1 GTAATTTTGCGAATTGAGGGTATTTT-GTAATTTTACAAATCAAGGGTATTTAGTAATT
94578008 ATACCCTACA
Statistics
Matches: 119, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
80 8 0.07
81 107 0.90
82 4 0.03
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.43
Consensus pattern (79 bp):
GTAATTTTGCGAATTGAGGGTATTTTGTAATTTTACAAATCAAGGGTATTTAGTAATTTTACAAA
CCAGGGGTATTTTG
Found at i:94578325 original size:49 final size:49
Alignment explanation
Indices: 94578253--94578350 Score: 142
Period size: 49 Copynumber: 2.0 Consensus size: 49
94578243 ATCGGTATTT
* * *
94578253 CGGCATTCTGGCATTTGCCGTTCTACAGTTAGAGAAGTGCGAAATACAC
1 CGGCATTCCGACATTTGCCGTTCTACAGCTAGAGAAGTGCGAAATACAC
** *
94578302 CGGCATTCCGACATTTTTCGTTCTACAGCTAGAGTAGTGCGAAATACAC
1 CGGCATTCCGACATTTGCCGTTCTACAGCTAGAGAAGTGCGAAATACAC
94578351 ATCTGTTTAT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (49 bp):
CGGCATTCCGACATTTGCCGTTCTACAGCTAGAGAAGTGCGAAATACAC
Found at i:94586586 original size:47 final size:47
Alignment explanation
Indices: 94585960--94586568 Score: 984
Period size: 47 Copynumber: 12.9 Consensus size: 47
94585950 ATGTGAAAGT
* * *
94585960 GTATATGTGTGAATAGGGCCGAATGGCCAATGTGATGAATGTGAACAT
1 GTATATGTGTG-ATAAGGCCGAATGGCCAATGTGATGAAAGTGAACAC
* * *
94586008 GCATATATGAGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACAC
1 GTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACAC
*
94586055 GTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACAT
1 GTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACAC
* * * *
94586102 GTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAACAT
1 GTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACAC
* * *
94586149 GCATATATGAGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACAC
1 GTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACAC
94586196 GTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACAC
1 GTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACAC
94586243 GTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACAC
1 GTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACAC
94586290 GTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACAC
1 GTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACAC
94586337 GTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACAC
1 GTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACAC
94586384 GTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACAC
1 GTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACAC
94586431 GTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACAC
1 GTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACAC
* * * * *
94586478 GTGTATGTGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAGCAT
1 GTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACAC
* * * * * *
94586525 GTGTATGTGAGATAATGCCTAATGGCCGATGTGATGAATGTGAA
1 GTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAA
94586569 AGTGTATAAA
Statistics
Matches: 527, Mismatches: 34, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
47 519 0.98
48 8 0.02
ACGTcount: A:0.33, C:0.12, G:0.31, T:0.24
Consensus pattern (47 bp):
GTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACAC
Found at i:94586631 original size:50 final size:50
Alignment explanation
Indices: 94586576--94586678 Score: 206
Period size: 50 Copynumber: 2.1 Consensus size: 50
94586566 GAAAGTGTAT
94586576 AAATGTGATAAGTCCCGAAGGGCATTTGTGTCAGTACTATATCCGGGTTA
1 AAATGTGATAAGTCCCGAAGGGCATTTGTGTCAGTACTATATCCGGGTTA
94586626 AAATGTGATAAGTCCCGAAGGGCATTTGTGTCAGTACTATATCCGGGTTA
1 AAATGTGATAAGTCCCGAAGGGCATTTGTGTCAGTACTATATCCGGGTTA
94586676 AAA
1 AAA
94586679 CCCCGCAGGC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (50 bp):
AAATGTGATAAGTCCCGAAGGGCATTTGTGTCAGTACTATATCCGGGTTA
Found at i:94586812 original size:37 final size:37
Alignment explanation
Indices: 94586756--94586835 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
94586746 CCGGGCTATA
* * *
94586756 AAGACCCGATGACTGCGTGTGG-GAATTTTGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAG-ATTATGTCCGGGT
*
94586793 AAGACTCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
94586830 AAGACT
1 AAGACT
94586836 TCGTAATAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (37 bp):
AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
Found at i:94593234 original size:27 final size:27
Alignment explanation
Indices: 94593203--94593379 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
94593193 TAAATTGTAC
94593203 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
94593230 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
94593256 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
94593284 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
94593312 AGCACTAAGTGTGCGATTTGATTA-CT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
94593338 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
94593365 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
94593380 GACTCAATAT
Statistics
Matches: 128, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
26 24 0.19
27 81 0.63
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:94593349 original size:81 final size:81
Alignment explanation
Indices: 94593204--94593358 Score: 233
Period size: 81 Copynumber: 1.9 Consensus size: 81
94593194 AAATTGTACA
*
94593204 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
94593269 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** *
94593285 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACT-A-GCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATA-TGATGCACTAAGT
*
94593348 GTGCGAGTTGA
64 GTGCGAATTGA
94593359 TTATATAGCA
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
81 34 0.51
82 32 0.48
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
GCGAATTGACCATGCG
Done.