Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 285 of 322
Found at i:94593370 original size:81 final size:81
Alignment explanation
Indices: 94593200--94593379 Score: 229
Period size: 81 Copynumber: 2.2 Consensus size: 81
94593190 GATTAAATTG
*
94593200 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
94593265 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
94593281 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACT-A-GCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATA-TGATGCACT
* **
94593344 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
94593362 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
94593380 GACTCAATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
81 51 0.61
82 32 0.38
83 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:94593760 original size:47 final size:47
Alignment explanation
Indices: 94593691--94593783 Score: 168
Period size: 47 Copynumber: 2.0 Consensus size: 47
94593681 GATATGAAAT
*
94593691 TGAATTGATAGGTTGGAGGAACTATGGTATGGTTCGGAATGGATGGC
1 TGAATCGATAGGTTGGAGGAACTATGGTATGGTTCGGAATGGATGGC
*
94593738 TGAATCGATAGGTTGGAGGAACTATGGTATGGTTCGGTATGGATGG
1 TGAATCGATAGGTTGGAGGAACTATGGTATGGTTCGGAATGGATGG
94593784 AGTAAATTGT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.25, C:0.06, G:0.39, T:0.30
Consensus pattern (47 bp):
TGAATCGATAGGTTGGAGGAACTATGGTATGGTTCGGAATGGATGGC
Found at i:94608975 original size:39 final size:39
Alignment explanation
Indices: 94608922--94609084 Score: 236
Period size: 39 Copynumber: 4.2 Consensus size: 39
94608912 GGACTTTAGC
* * * ** *
94608922 CCGGACATATTTCCAGCACGTAGCCTGTGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTACGGACCCTAAGT
* *
94608961 CCGGTTATAATTCCAGCACATAGCCTACGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTACGGACCCTAAGT
94609000 CCGGATATAATTCCAGCACATAGCCTACGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTACGGACCCTAAGT
**
94609039 CCGGATATAATTCCAGCACATAGCCTGTGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTACGGACCCTAAGT
94609078 CCGGATA
1 CCGGATA
94609085 AACATCACTG
Statistics
Matches: 114, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 114 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTACGGACCCTAAGT
Found at i:94617169 original size:38 final size:39
Alignment explanation
Indices: 94617057--94617204 Score: 217
Period size: 39 Copynumber: 3.8 Consensus size: 39
94617047 ACATATTTCT
* * * *
94617057 AGCACGTAGCATGCGGACCGTAAGTCCGGTTATAATTCC
1 AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCC
* *
94617096 AGCACATAGCCTGCAGACCTTAAGTCCGGATATAATTCC
1 AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCC
94617135 AGCACATAGCCTGCGGACCCT-AGTCCGGATATAATTCC
1 AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCC
* *
94617173 AGCACATAACCTGCGGACCCTAAGTCCAGATA
1 AGCACATAGCCTGCGGACCCTAAGTCCGGATA
94617205 AACATCACTA
Statistics
Matches: 99, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
38 37 0.37
39 62 0.63
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (39 bp):
AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCC
Found at i:94617176 original size:77 final size:78
Alignment explanation
Indices: 94617057--94617204 Score: 217
Period size: 77 Copynumber: 1.9 Consensus size: 78
94617047 ACATATTTCT
* * * * *
94617057 AGCACGTAGCATGCGGACCGTAAGTCCGGTTATAATTCCAGCACATAGCCTGCAGACCTTAAGTC
1 AGCACATAGCATGCGGACCCTAAGTCCGGATATAATTCCAGCACATAACCTGCAGACCCTAAGTC
*
94617122 CGGATATAATTCC
66 CAGATATAATTCC
* *
94617135 AGCACATAGCCTGCGGACCCT-AGTCCGGATATAATTCCAGCACATAACCTGCGGACCCTAAGTC
1 AGCACATAGCATGCGGACCCTAAGTCCGGATATAATTCCAGCACATAACCTGCAGACCCTAAGTC
94617199 CAGATA
66 CAGATA
94617205 AACATCACTA
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
77 44 0.71
78 18 0.29
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (78 bp):
AGCACATAGCATGCGGACCCTAAGTCCGGATATAATTCCAGCACATAACCTGCAGACCCTAAGTC
CAGATATAATTCC
Found at i:94623770 original size:40 final size:40
Alignment explanation
Indices: 94623720--94623909 Score: 294
Period size: 40 Copynumber: 4.8 Consensus size: 40
94623710 GATATAACTG
* * *
94623720 CTCGCTCAAATGCCTTCGAGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAA
94623760 CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAA
*
94623800 CTTGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAA
* *
94623840 CTCGCACGAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTCA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAA
*
94623879 CTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGG
94623910 TTATCGTCCG
Statistics
Matches: 139, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
38 1 0.01
39 34 0.24
40 104 0.75
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAA
Found at i:94629241 original size:13 final size:13
Alignment explanation
Indices: 94629223--94629249 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
94629213 CATGTGAGCT
94629223 TACTAAGCATTTA
1 TACTAAGCATTTA
94629236 TACTAAGCATTTA
1 TACTAAGCATTTA
94629249 T
1 T
94629250 GCTTACTTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.15, G:0.07, T:0.41
Consensus pattern (13 bp):
TACTAAGCATTTA
Found at i:94631896 original size:15 final size:15
Alignment explanation
Indices: 94631844--94631927 Score: 91
Period size: 15 Copynumber: 5.7 Consensus size: 15
94631834 ATATCTATCT
*
94631844 TGGGTTTCTTTATCC
1 TGGGTTTCTTTATTC
* *
94631859 TGGATCTCTTTATTC
1 TGGGTTTCTTTATTC
*
94631874 TGGATTTCTTTATTC
1 TGGGTTTCTTTATTC
*
94631889 TGGGTTTCTCTA-TC
1 TGGGTTTCTTTATTC
94631903 TTGGGTTTCTTTATTC
1 -TGGGTTTCTTTATTC
*
94631919 -GGTTTTCTT
1 TGGGTTTCTT
94631928 GTTATCTTTG
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
14 10 0.17
15 47 0.80
16 2 0.03
ACGTcount: A:0.08, C:0.17, G:0.18, T:0.57
Consensus pattern (15 bp):
TGGGTTTCTTTATTC
Found at i:94631912 original size:30 final size:30
Alignment explanation
Indices: 94631837--94631926 Score: 103
Period size: 30 Copynumber: 3.0 Consensus size: 30
94631827 CGGCATAATA
* *
94631837 TCTATCTTGGGTTTCTTTATCCTGGATCTC
1 TCTATCTTGGGTTTCTTTATTCTGGATTTC
* * *
94631867 TTTAT-TCTGGATTTCTTTATTCTGGGTTTC
1 TCTATCT-TGGGTTTCTTTATTCTGGATTTC
*
94631897 TCTATCTTGGGTTTCTTTATTC-GGTTTTC
1 TCTATCTTGGGTTTCTTTATTCTGGATTTC
94631926 T
1 T
94631927 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.09, C:0.18, G:0.17, T:0.57
Consensus pattern (30 bp):
TCTATCTTGGGTTTCTTTATTCTGGATTTC
Found at i:94632637 original size:94 final size:94
Alignment explanation
Indices: 94632476--94632861 Score: 754
Period size: 94 Copynumber: 4.1 Consensus size: 94
94632466 ACAGTGAGGT
94632476 AATGTGATAGTTTAGAGCATTCGATGTTACATAAAATCGGAGTTGTTAAAGGGGTTAAAGCCGAG
1 AATGTGATAGTTTAGAGCATTCGATGTTACATAAAATCGGAGTTGTTAAAGGGGTTAAAGCCGAG
94632541 CACTGGGATCTATCAAAATTATCCTTGTC
66 CACTGGGATCTATCAAAATTATCCTTGTC
94632570 AATGTGATAGTTTAGAGCATTCGATGTTACATAAAATCGGAGTTGTTAAAGGGGTTAAAGCCGAG
1 AATGTGATAGTTTAGAGCATTCGATGTTACATAAAATCGGAGTTGTTAAAGGGGTTAAAGCCGAG
94632635 CACTGGGATCTATCAAAATTATCCTTGTC
66 CACTGGGATCTATCAAAATTATCCTTGTC
94632664 AATGTGATAGTTTAGAGCATTCGATGTTACATAAAATCGGAGTTGTTAAAGGGGTTAAAGCCGAG
1 AATGTGATAGTTTAGAGCATTCGATGTTACATAAAATCGGAGTTGTTAAAGGGGTTAAAGCCGAG
94632729 CACTGGGATCTATCAAAATTATCCTTGTC
66 CACTGGGATCTATCAAAATTATCCTTGTC
94632758 AATGTGATAGTTTAGAGCATTCGATGTTACATAAAATCGGAGTTGTTAAAGGGGTTAAAGCCGAG
1 AATGTGATAGTTTAGAGCATTCGATGTTACATAAAATCGGAGTTGTTAAAGGGGTTAAAGCCGAG
*
94632823 CATTGGGATCTATCAAAATTATCCTTGTC
66 CACTGGGATCTATCAAAATTATCCTTGTC
94632852 AATGTTGATA
1 AATG-TGATA
94632862 TTGGGATGGA
Statistics
Matches: 290, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
94 285 0.98
95 5 0.02
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.31
Consensus pattern (94 bp):
AATGTGATAGTTTAGAGCATTCGATGTTACATAAAATCGGAGTTGTTAAAGGGGTTAAAGCCGAG
CACTGGGATCTATCAAAATTATCCTTGTC
Found at i:94639174 original size:45 final size:45
Alignment explanation
Indices: 94638973--94639184 Score: 210
Period size: 45 Copynumber: 4.7 Consensus size: 45
94638963 TACCGGAATT
* * * *
94638973 GAGTAAGGCCATAGTTGAAACACGTTATGGCATCACGATTCAGAC
1 GAGTAAGACCATAGCTGAAAGACGCTATGGCATCACGATTCAGAC
* * * *
94639018 GAGTAAGACCATAGCT-AACAGACACTATGGCCTTACGATTTAGAC
1 GAGTAAGACCATAGCTGAA-AGACGCTATGGCATCACGATTCAGAC
* * * * *
94639063 GAGTAAGACTATAGCTGAAAGATGCTATGGAATCACGATTCAAAT
1 GAGTAAGACCATAGCTGAAAGACGCTATGGCATCACGATTCAGAC
* * * * * *
94639108 GAGTAAGACCATAGCTAAAAGATGTTATCGCATCACGGTTCAGAT
1 GAGTAAGACCATAGCTGAAAGACGCTATGGCATCACGATTCAGAC
* * *
94639153 GTGTAAGACCATAGTTGAAAGACACTATGGCA
1 GAGTAAGACCATAGCTGAAAGACGCTATGGCA
94639185 ACATGACAGG
Statistics
Matches: 134, Mismatches: 31, Indels: 4
0.79 0.18 0.02
Matches are distributed among these distances:
44 2 0.01
45 130 0.97
46 2 0.01
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.23
Consensus pattern (45 bp):
GAGTAAGACCATAGCTGAAAGACGCTATGGCATCACGATTCAGAC
Found at i:94639216 original size:46 final size:46
Alignment explanation
Indices: 94639156--94639266 Score: 179
Period size: 46 Copynumber: 2.4 Consensus size: 46
94639146 TTCAGATGTG
*
94639156 TAAGACCATAGTTGAAAGACACTATGGCAACATGACAGG-AAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCAACATAAC-GGAAAATGAA
* *
94639202 TAAGACCATGGTTGAAAGACACTATGGCAATATAACGGAAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCAACATAACGGAAAATGAA
94639248 TAAGACCATAGTTGAAAGA
1 TAAGACCATAGTTGAAAGA
94639267 TATGTCATCA
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
45 2 0.03
46 58 0.97
ACGTcount: A:0.46, C:0.14, G:0.22, T:0.19
Consensus pattern (46 bp):
TAAGACCATAGTTGAAAGACACTATGGCAACATAACGGAAAATGAA
Found at i:94639396 original size:26 final size:26
Alignment explanation
Indices: 94639366--94639430 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 26
94639356 ATGACGAATA
94639366 GTTATATG-AATTAATTATACA-AAATG
1 GTTATATGAAATT-ATTATA-AGAAATG
* *
94639392 GTTATGTGAAATTATTATAAGAATTG
1 GTTATATGAAATTATTATAAGAAATG
94639418 GTTATATGGAAAT
1 GTTATAT-GAAAT
94639431 AGATGTACGA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
25 1 0.03
26 23 0.70
27 9 0.27
ACGTcount: A:0.42, C:0.02, G:0.17, T:0.40
Consensus pattern (26 bp):
GTTATATGAAATTATTATAAGAAATG
Found at i:94639489 original size:27 final size:28
Alignment explanation
Indices: 94639459--94639519 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 28
94639449 TATGAATTAG
94639459 TTATATGGAAACAGATAAACA-AAATAA
1 TTATATGGAAACAGATAAACAGAAATAA
* * * *
94639486 TTATAT-GAATCGGATATATAGAAATAA
1 TTATATGGAAACAGATAAACAGAAATAA
94639513 TTATATG
1 TTATATG
94639520 AAGTGTTATA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
26 10 0.36
27 18 0.64
ACGTcount: A:0.51, C:0.05, G:0.13, T:0.31
Consensus pattern (28 bp):
TTATATGGAAACAGATAAACAGAAATAA
Found at i:94641057 original size:20 final size:21
Alignment explanation
Indices: 94641034--94641074 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
94641024 ATTTTTTTCT
94641034 TTACTTTTTTTATC-TCTTCC
1 TTACTTTTTTTATCATCTTCC
*
94641054 TTACTTTTTTTTTCATCTTCC
1 TTACTTTTTTTATCATCTTCC
94641075 CCTTTCTAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.10, C:0.24, G:0.00, T:0.66
Consensus pattern (21 bp):
TTACTTTTTTTATCATCTTCC
Found at i:94641062 original size:21 final size:20
Alignment explanation
Indices: 94641034--94641074 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
94641024 ATTTTTTTCT
94641034 TTACTTTTTTTATC-TCTTCC
1 TTACTTTTTTT-TCATCTTCC
94641054 TTACTTTTTTTTTCATCTTCC
1 TTAC-TTTTTTTTCATCTTCC
94641075 CCTTTCTAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.10, C:0.24, G:0.00, T:0.66
Consensus pattern (20 bp):
TTACTTTTTTTTCATCTTCC
Found at i:94642030 original size:20 final size:21
Alignment explanation
Indices: 94641987--94642047 Score: 65
Period size: 20 Copynumber: 3.0 Consensus size: 21
94641977 TATCCATTAA
*
94641987 TAAAAATATAATTATATTATT
1 TAAAAATAAAATTATATTATT
94642008 TAAAAATAAAATT-TA-TATCT
1 TAAAAATAAAATTATATTAT-T
* *
94642028 TAAAATTAAAA-TATTTTATT
1 TAAAAATAAAATTATATTATT
94642048 ATTTATTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
19 4 0.12
20 15 0.44
21 15 0.44
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (21 bp):
TAAAAATAAAATTATATTATT
Found at i:94645694 original size:22 final size:22
Alignment explanation
Indices: 94645669--94645715 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
94645659 GTTTCTAGTC
* *
94645669 CACACGGGCGTGTGCCTCTACT
1 CACACGGCCGTGTGCCCCTACT
*
94645691 CACACGGCCGTGTGCCCCTATT
1 CACACGGCCGTGTGCCCCTACT
94645713 CAC
1 CAC
94645716 GCAATTGTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.15, C:0.40, G:0.23, T:0.21
Consensus pattern (22 bp):
CACACGGCCGTGTGCCCCTACT
Found at i:94648795 original size:18 final size:18
Alignment explanation
Indices: 94648772--94648807 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
94648762 GAGTTCGATG
94648772 TATGTTGTCAAATGCTAA
1 TATGTTGTCAAATGCTAA
94648790 TATGTTGTCAAATGCTAA
1 TATGTTGTCAAATGCTAA
94648808 CTTACCGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (18 bp):
TATGTTGTCAAATGCTAA
Found at i:94657708 original size:43 final size:43
Alignment explanation
Indices: 94657646--94657762 Score: 144
Period size: 43 Copynumber: 2.6 Consensus size: 43
94657636 GAGGGGGTGT
* * *
94657646 TAGGATTATTATCGGATATTAGCTTTTAACAATTTGATTCCTAA
1 TAGGA-TATTATAGGATATTATCTTTTAACAATTTGATTCCAAA
* * *
94657690 TAGGATATTATAGGATATTATCTCTTAGCAGTTTGATTCCAAA
1 TAGGATATTATAGGATATTATCTTTTAACAATTTGATTCCAAA
94657733 TAGGATATTATTAAGGATTATTATCTTTTA
1 TAGGATATTA-T-AGGA-TATTATCTTTTA
94657763 GTAATTTAAT
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
43 42 0.67
44 6 0.10
45 4 0.06
46 11 0.17
ACGTcount: A:0.32, C:0.09, G:0.15, T:0.44
Consensus pattern (43 bp):
TAGGATATTATAGGATATTATCTTTTAACAATTTGATTCCAAA
Found at i:94658806 original size:41 final size:41
Alignment explanation
Indices: 94658761--94658851 Score: 112
Period size: 41 Copynumber: 2.2 Consensus size: 41
94658751 GTATATTATG
* *
94658761 TCAGGCCTTGAGCCTGGCAGGCTTTGTA-CCAATGTATTGAA
1 TCAGGCCTTAAGCCTGGCAAGCTTTG-AGCCAATGTATTGAA
* * *
94658802 TCAGGCGTTAAGCCTGGCAAGCTTTGAGTCAGTGTATTGAA
1 TCAGGCCTTAAGCCTGGCAAGCTTTGAGCCAATGTATTGAA
*
94658843 TCAAGCCTT
1 TCAGGCCTT
94658852 CATCGTAGCA
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
40 1 0.02
41 41 0.98
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (41 bp):
TCAGGCCTTAAGCCTGGCAAGCTTTGAGCCAATGTATTGAA
Found at i:94662843 original size:38 final size:38
Alignment explanation
Indices: 94662800--94662875 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
94662790 GGTAAATGTA
*
94662800 CCAAAGTATGTGTTATGGGTTGGTTTGAATAATGTATG
1 CCAAAGTATGTGTTATGGGTCGGTTTGAATAATGTATG
*
94662838 CCAAAGTATGTGTTATGGGTCGGTTTGAATAATTTATG
1 CCAAAGTATGTGTTATGGGTCGGTTTGAATAATGTATG
94662876 TATTAAATAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.26, C:0.07, G:0.28, T:0.39
Consensus pattern (38 bp):
CCAAAGTATGTGTTATGGGTCGGTTTGAATAATGTATG
Found at i:94663236 original size:20 final size:20
Alignment explanation
Indices: 94663211--94663248 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
94663201 CTAGGAACTA
*
94663211 TGTGATCTGAGCTCATGAGT
1 TGTGATATGAGCTCATGAGT
*
94663231 TGTGATATGAGTTCATGA
1 TGTGATATGAGCTCATGA
94663249 TATATGTGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.11, G:0.29, T:0.37
Consensus pattern (20 bp):
TGTGATATGAGCTCATGAGT
Found at i:94670481 original size:12 final size:12
Alignment explanation
Indices: 94670464--94670488 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
94670454 TTTTGATCAA
94670464 AGATAATCACTT
1 AGATAATCACTT
94670476 AGATAATCACTT
1 AGATAATCACTT
94670488 A
1 A
94670489 TTGGAATGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (12 bp):
AGATAATCACTT
Found at i:94678565 original size:36 final size:36
Alignment explanation
Indices: 94678513--94678583 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
94678503 AGTAAACTTT
* * *
94678513 ATTCAGTTCAGTAGCCTTTTGGATCTATTCTAACTG
1 ATTCAGTTCAGCAGCCTTTCGAATCTATTCTAACTG
94678549 ATTCAGTTCAGCAGCCTTTCGAATCTATTCTAACT
1 ATTCAGTTCAGCAGCCTTTCGAATCTATTCTAACT
94678584 AATGCGCTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.39
Consensus pattern (36 bp):
ATTCAGTTCAGCAGCCTTTCGAATCTATTCTAACTG
Found at i:94683748 original size:27 final size:27
Alignment explanation
Indices: 94683717--94683894 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
94683707 TAAATTGTAC
94683717 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
94683744 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
94683770 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
94683798 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
94683826 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
94683853 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
94683880 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
94683895 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:94683831 original size:82 final size:81
Alignment explanation
Indices: 94683718--94683873 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
94683708 AAATTGTACA
* *
94683718 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
94683782 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
94683799 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
94683864 TGCGAGTTGA
65 TGCGAATTGA
94683874 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:94683885 original size:82 final size:81
Alignment explanation
Indices: 94683714--94683894 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
94683704 GATTAAATTG
* *
94683714 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
94683779 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
94683795 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
94683859 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
94683877 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
94683895 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:94694684 original size:40 final size:41
Alignment explanation
Indices: 94694627--94694777 Score: 206
Period size: 40 Copynumber: 3.8 Consensus size: 41
94694617 TTGAATGATG
* *
94694627 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGA-TGACCATA
94694667 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATG--CATA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATGACCATA
* *
94694706 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGAT-ACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATGACCATA
94694746 TCCGGACTAAGATCCGAAGGCATTTGTGCGAG
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAG
94694778 TTCCTAAATC
Statistics
Matches: 102, Mismatches: 4, Indels: 10
0.88 0.03 0.09
Matches are distributed among these distances:
39 38 0.37
40 52 0.51
41 11 0.11
42 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (41 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATGACCATA
Found at i:94694785 original size:40 final size:40
Alignment explanation
Indices: 94694666--94694851 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
94694656 AAGTGACCAT
* *
94694666 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATGC-AT
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
94694705 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
* *
94694745 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTCCTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
** * *
94694785 ATCCGGGTTAAG-TCCCGAAGGCAATTGTGCGAGTTACTATA
1 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-A
* *
94694826 A-CCGGGCTATG-TCCCGAAGGCATTTG
1 ATCCGGACTAAGAT-CCGAAGGCATTTG
94694852 AACGAGGAGC
Statistics
Matches: 133, Mismatches: 11, Indels: 5
0.89 0.07 0.03
Matches are distributed among these distances:
39 37 0.28
40 94 0.71
41 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
Found at i:94694843 original size:80 final size:79
Alignment explanation
Indices: 94694627--94694851 Score: 260
Period size: 80 Copynumber: 2.8 Consensus size: 79
94694617 TTGAATGATG
* * * *
94694627 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGACTAAGATCCGAAGGCATT
* *
94694691 TGTGCGAGATGCATA
65 TGTGCGAGATCCAAA
* *
94694706 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-AATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGACTAAGATCCGAAGGCAT
*
94694769 TTGTGCGAGTTCCTAAA
64 TTGTGCGAGATCC-AAA
* * * *
94694786 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTATG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGACTAAGAT-CCGAAGGCATT
94694850 TG
65 TG
94694852 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 13
0.82 0.10 0.09
Matches are distributed among these distances:
78 1 0.01
79 58 0.47
80 63 0.51
81 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGACTAAGATCCGAAGGCATTT
GTGCGAGATCCAAA
Found at i:94703783 original size:18 final size:18
Alignment explanation
Indices: 94703760--94703796 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
94703750 TTCAGAAGAG
94703760 ATACAGCATACATTACAC
1 ATACAGCATACATTACAC
94703778 ATACAGCATACATTACAC
1 ATACAGCATACATTACAC
94703796 A
1 A
94703797 CTTCTTAGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.27, G:0.05, T:0.22
Consensus pattern (18 bp):
ATACAGCATACATTACAC
Found at i:94725579 original size:30 final size:30
Alignment explanation
Indices: 94725536--94725594 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
94725526 CTTAATAAGC
*
94725536 AAATGCCTCTAAAATAATAACAAAATTAAT
1 AAATGCCTCTAAAATAATAAAAAAATTAAT
* * *
94725566 AAATGTCTTTAAAATCATAAAAAAATTAA
1 AAATGCCTCTAAAATAATAAAAAAATTAA
94725595 CAATAAAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.58, C:0.10, G:0.03, T:0.29
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAAAAAAATTAAT
Found at i:94731686 original size:16 final size:15
Alignment explanation
Indices: 94731665--94731696 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
94731655 AATATTTGAT
94731665 AATGACTAGCTAATGG
1 AATGACTAGCT-ATGG
94731681 AATGACTAGCTATGG
1 AATGACTAGCTATGG
94731696 A
1 A
94731697 CATGCTTGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.38, C:0.12, G:0.25, T:0.25
Consensus pattern (15 bp):
AATGACTAGCTATGG
Found at i:94733277 original size:20 final size:20
Alignment explanation
Indices: 94733252--94733290 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
94733242 GGTGAAAGAG
*
94733252 TTAGTTCTGAAGAAGTGTCA
1 TTAGTTCTAAAGAAGTGTCA
94733272 TTAGTTCTAAAGAAGTGTC
1 TTAGTTCTAAAGAAGTGTC
94733291 GTTCAATCGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (20 bp):
TTAGTTCTAAAGAAGTGTCA
Found at i:94735309 original size:104 final size:104
Alignment explanation
Indices: 94734880--94735300 Score: 680
Period size: 104 Copynumber: 4.0 Consensus size: 104
94734870 TTGTCAACAT
* * * * **
94734880 AGCTCACAAAACTATGTTCCCAGCTGATGTTTAAAGGTTAGATGAGTTATACTCAAAATGTTCAT
1 AGCTCACAGAACTATGTTCCCAGTTGATGTTGAAAGGTTAGATGAGTTATACTCACAACCTTCAT
*
94734945 TTATTTGAGTAAGTTGAGTTAAGCTTGCTACTCTGGAAC
66 TTATTTGAGTAAGCTGAGTTAAGCTTGCTACTCTGGAAC
* *
94734984 AGCTCACAGAATTATGTTCCCAGTTGATGTTGAAAGGTTAGATGAGTTATACTCACAACCTTTAT
1 AGCTCACAGAACTATGTTCCCAGTTGATGTTGAAAGGTTAGATGAGTTATACTCACAACCTTCAT
94735049 TTATTTGAGTAAGCTGAGTTAAGCTTGCTACTCTGGAAC
66 TTATTTGAGTAAGCTGAGTTAAGCTTGCTACTCTGGAAC
* *
94735088 AGCTCACAGAATTATGTTCCCAGTTGATGTTGAAAGGTTAGATGAGTTATACTCACAACCTTTAT
1 AGCTCACAGAACTATGTTCCCAGTTGATGTTGAAAGGTTAGATGAGTTATACTCACAACCTTCAT
94735153 TTATTTGAGTAAGCTGAGTTAAGCTTGCTACTCTGGAAC
66 TTATTTGAGTAAGCTGAGTTAAGCTTGCTACTCTGGAAC
* ** *
94735192 AGCTCACAGACCTACATTCCCAGTTGATGTTTAAAGGTTAGATGAGTTATACTCACAACCTTCAT
1 AGCTCACAGAACTATGTTCCCAGTTGATGTTGAAAGGTTAGATGAGTTATACTCACAACCTTCAT
* * *
94735257 TTATTTGAGTAAGCTGAGTTAAGCTCGCTACTTTGGAAT
66 TTATTTGAGTAAGCTGAGTTAAGCTTGCTACTCTGGAAC
94735296 AGCTC
1 AGCTC
94735301 GCGGACCTAT
Statistics
Matches: 299, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
104 299 1.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.34
Consensus pattern (104 bp):
AGCTCACAGAACTATGTTCCCAGTTGATGTTGAAAGGTTAGATGAGTTATACTCACAACCTTCAT
TTATTTGAGTAAGCTGAGTTAAGCTTGCTACTCTGGAAC
Found at i:94740771 original size:79 final size:81
Alignment explanation
Indices: 94740662--94740844 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
94740652 TACTCGTTCA
* *
94740662 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
94740725 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
94740742 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
94740805 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
94740821 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
94740845 CATCATTTGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:94740844 original size:40 final size:40
Alignment explanation
Indices: 94740641--94740844 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
94740631 CGGAATTTAA
** *
94740641 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
94740681 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
94740721 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
94740760 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
94740800 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
94740840 CCGGA
1 CCGGA
94740845 CATCATTTGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:94748621 original size:79 final size:81
Alignment explanation
Indices: 94748512--94748694 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
94748502 TACTCGTTCA
* *
94748512 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
94748575 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
94748592 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
94748655 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
94748671 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
94748695 CATCATTTGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:94748694 original size:40 final size:40
Alignment explanation
Indices: 94748491--94748694 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
94748481 CGGAATTTAA
** *
94748491 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
94748531 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
94748571 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
94748610 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
94748650 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
94748690 CCGGA
1 CCGGA
94748695 CATCATTTGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:94767208 original size:28 final size:27
Alignment explanation
Indices: 94767168--94767256 Score: 97
Period size: 28 Copynumber: 3.1 Consensus size: 27
94767158 GTGAGCAAGA
* *
94767168 ATATGAATGTGATTGGGCCTAACGGGCC
1 ATAT-AATGTGATTGCGCCTAATGGGCC
94767196 ATATAAATGTGATTTGCGCCTAATGGGCC
1 ATAT-AATGTGA-TTGCGCCTAATGGGCC
* * *
94767225 ACATAAGGTGATTCGTGCCTAATGGGCC
1 ATATAATGTGATT-GCGCCTAATGGGCC
94767253 ATAT
1 ATAT
94767257 GAAAATGATT
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
27 2 0.04
28 33 0.63
29 17 0.33
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (27 bp):
ATATAATGTGATTGCGCCTAATGGGCC
Found at i:94767252 original size:57 final size:56
Alignment explanation
Indices: 94767176--94767290 Score: 135
Period size: 57 Copynumber: 2.0 Consensus size: 56
94767166 GAATATGAAT
* *
94767176 GTGATTGGGCCTAACGGGCCATAT-AAATGTGATTTGCGCCTAATGGGCCACATA-AG
1 GTGATTGGGCCTAACGGGCCATATGAAA-ATGATTAG-GCCTAATGGGCCACATACAG
* * * *
94767232 GTGATTCGTGCCTAATGGGCCATATGAAAATGATTAGGCTTAATGGGCCAGATACAG
1 GTGATT-GGGCCTAACGGGCCATATGAAAATGATTAGGCCTAATGGGCCACATACAG
94767289 GT
1 GT
94767291 ATGTGAATTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
56 21 0.42
57 26 0.52
58 3 0.06
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (56 bp):
GTGATTGGGCCTAACGGGCCATATGAAAATGATTAGGCCTAATGGGCCACATACAG
Found at i:94769920 original size:51 final size:51
Alignment explanation
Indices: 94769865--94769962 Score: 133
Period size: 51 Copynumber: 1.9 Consensus size: 51
94769855 ACGTTATAAT
* *
94769865 ATGTAACACATCCATAATGAACTCAGACCTCTCAACGAGCTCGGATGTTAC
1 ATGTAACACATCCATAATGAACTCAGACCACTCAACGAGCTCAGATGTTAC
* * * **
94769916 ATGTATCGCATCCATTATGAACTTGGACCACTCAACGAGCTCAGATG
1 ATGTAACACATCCATAATGAACTCAGACCACTCAACGAGCTCAGATG
94769963 CTTGCATCCA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 40 1.00
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (51 bp):
ATGTAACACATCCATAATGAACTCAGACCACTCAACGAGCTCAGATGTTAC
Found at i:94769984 original size:43 final size:43
Alignment explanation
Indices: 94769923--94770007 Score: 143
Period size: 43 Copynumber: 2.0 Consensus size: 43
94769913 TACATGTATC
* *
94769923 GCATCCATTATGAACTTGGACCACTCAACGAGCTCAGATGCTT
1 GCATCCATAATGAACTTGGACCAATCAACGAGCTCAGATGCTT
*
94769966 GCATCCATAATGAACTTGGACCAATCAATGAGCTCAGATGCT
1 GCATCCATAATGAACTTGGACCAATCAACGAGCTCAGATGCT
94770008 ACATATATTA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.25
Consensus pattern (43 bp):
GCATCCATAATGAACTTGGACCAATCAACGAGCTCAGATGCTT
Found at i:94770077 original size:43 final size:42
Alignment explanation
Indices: 94769934--94770079 Score: 112
Period size: 43 Copynumber: 3.4 Consensus size: 42
94769924 CATCCATTAT
* * * * ** * *
94769934 GAACTTGGACCACTCAACGAGCTCAGATGCTTGCATCCATAAT
1 GAACTCGGACCACTCAACAAGTTCAGATGC-TACATATATCAC
* * ** * *
94769977 GAACTTGGACCAATCAATGAGCTCAGATGCTACATATATTAC
1 GAACTCGGACCACTCAACAAGTTCAGATGCTACATATATCAC
* * * *
94770019 GAACTTGTACTACTCAACAAGTTCAGATTCTCACATATATCAC
1 GAACTCGGACCACTCAACAAGTTCAGATGCT-ACATATATCAC
94770062 GAACTCGGACCACTCAAC
1 GAACTCGGACCACTCAAC
94770080 GAGCTCGATT
Statistics
Matches: 84, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
42 31 0.37
43 53 0.63
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.25
Consensus pattern (42 bp):
GAACTCGGACCACTCAACAAGTTCAGATGCTACATATATCAC
Found at i:94773053 original size:29 final size:29
Alignment explanation
Indices: 94772992--94773081 Score: 137
Period size: 29 Copynumber: 3.1 Consensus size: 29
94772982 CACATACTTG
* *
94772992 TATATGGCCCACTAGACCC-AATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
94773020 TATATGGCCCATTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* *
94773049 TATATGGCCCATCAGGCCCAATTCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
94773078 TATA
1 TATA
94773082 GTCATACTCA
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
28 17 0.30
29 40 0.70
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.28
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:94773319 original size:16 final size:16
Alignment explanation
Indices: 94773294--94773328 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
94773284 GTAGTCAAAC
94773294 TTTTGACTTTTCGGTA
1 TTTTGACTTTTCGGTA
*
94773310 TTTTGGCTTTTCGGTA
1 TTTTGACTTTTCGGTA
94773326 TTT
1 TTT
94773329 CGGGATTTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.09, C:0.11, G:0.20, T:0.60
Consensus pattern (16 bp):
TTTTGACTTTTCGGTA
Found at i:94774020 original size:4 final size:4
Alignment explanation
Indices: 94774011--94774039 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
94774001 TTTATACTAG
94774011 AATA AATA AATA AATA AATA AATA AATA A
1 AATA AATA AATA AATA AATA AATA AATA A
94774040 TACACCTACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:94776091 original size:40 final size:40
Alignment explanation
Indices: 94775993--94776295 Score: 396
Period size: 40 Copynumber: 7.6 Consensus size: 40
94775983 TCCTCGTTCA
* * * * *
94775993 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
94776032 AATGCCTTCGGGACATAACCCGGATTTAATAACTCACACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
94776072 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
94776112 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
94776152 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
94776192 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
94776232 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
94776272 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
94776296 CAGCATTCAA
Statistics
Matches: 240, Mismatches: 20, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 39 0.16
40 193 0.80
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:94780997 original size:27 final size:27
Alignment explanation
Indices: 94780967--94781144 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
94780957 ATATTGAGTC
* * * *
94780967 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
94780994 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
94781021 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
94781049 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
94781076 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
94781103 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
94781130 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
94781145 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:94781106 original size:82 final size:81
Alignment explanation
Indices: 94780988--94781143 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
94780978 TGCTATATAA
* *
94780988 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
94781053 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
94781070 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
94781134 CACTTAGTGC
65 CACTTAGTGC
94781144 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:94781645 original size:12 final size:12
Alignment explanation
Indices: 94781628--94781654 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
94781618 ATGGCATACT
94781628 TATGTATATATA
1 TATGTATATATA
94781640 TATGTATATATA
1 TATGTATATATA
94781652 TAT
1 TAT
94781655 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:94784308 original size:16 final size:16
Alignment explanation
Indices: 94784289--94784319 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
94784279 CTTCTTCTCT
94784289 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
94784305 TACTTACTTACTTAA
1 TACTCACTTACTTAA
94784320 TTAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:94784310 original size:20 final size:20
Alignment explanation
Indices: 94784287--94784325 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
94784277 AACTTCTTCT
*
94784287 CTTACTCACTTACTTAAATA
1 CTTACTCACTTAATTAAATA
*
94784307 CTTACTTACTTAATTAAAT
1 CTTACTCACTTAATTAAAT
94784326 TTATTAATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
CTTACTCACTTAATTAAATA
Found at i:94784699 original size:55 final size:53
Alignment explanation
Indices: 94784570--94784765 Score: 189
Period size: 55 Copynumber: 3.6 Consensus size: 53
94784560 CTTACCATTT
* *
94784570 CCATGTATTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATG
1 CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATG
* * * * *
94784623 CCATGCCTTGGCATGGTCTTACATGGGA-CCTTTTCCTTATAGTAACTTATCAATG
1 CCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AACTCACCAATG
*** *
94784678 CCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTTACCAATTG
1 CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA-CTCACCAA-TG
* * * *
94784733 CGATGCCTTGGCATGGTCTTACATGGTATCCTT
1 CCATGTCTTGACATGGTCTTACATGGGATCCTT
94784766 AAACCCTAAT
Statistics
Matches: 117, Mismatches: 20, Indels: 10
0.80 0.14 0.07
Matches are distributed among these distances:
52 2 0.02
53 35 0.30
54 8 0.07
55 70 0.60
56 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (53 bp):
CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATG
Found at i:94792533 original size:47 final size:47
Alignment explanation
Indices: 94792459--94792550 Score: 166
Period size: 47 Copynumber: 2.0 Consensus size: 47
94792449 TCAACTTACC
* *
94792459 TCTCTGTTGAATGATCATGGTGGTTCGAGTAGTTTATACTCCTCACT
1 TCTCCGTTGAATGATCATGGTGGTTCGAGGAGTTTATACTCCTCACT
94792506 TCTCCGTTGAATGATCATGGTGGTTCGAGGAGTTTATACTCCTCA
1 TCTCCGTTGAATGATCATGGTGGTTCGAGGAGTTTATACTCCTCA
94792551 TTCCTGCTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.38
Consensus pattern (47 bp):
TCTCCGTTGAATGATCATGGTGGTTCGAGGAGTTTATACTCCTCACT
Found at i:94803759 original size:115 final size:115
Alignment explanation
Indices: 94803557--94803786 Score: 406
Period size: 115 Copynumber: 2.0 Consensus size: 115
94803547 TAAAGAAATC
** *
94803557 GGATTTAGATTGGGGAAAAACGAAAGTTGTCGACTAGCCGCCCGATTTCATTTTGTACCGTCCGA
1 GGATTTAGATCAGGGAAAAACGAAAGTTGTCAACTAGCCGCCCGATTTCATTTTGTACCGTCCGA
94803622 GATAAGTTTATAAGCAAATAGACGTGTTTATTTGGTAATTAAATGTTATT
66 GATAAGTTTATAAGCAAATAGACGTGTTTATTTGGTAATTAAATGTTATT
* *
94803672 GGATTTAGATCAGGGAAAGACGAAAGTTGTCAACTAGCTGCCCGATTTCATTTTGTACCGTCCGA
1 GGATTTAGATCAGGGAAAAACGAAAGTTGTCAACTAGCCGCCCGATTTCATTTTGTACCGTCCGA
*
94803737 GGTAAGTTTATAAGCAAATAGACGTGTTTATTTGGTAATTAAATGTTATT
66 GATAAGTTTATAAGCAAATAGACGTGTTTATTTGGTAATTAAATGTTATT
94803787 TTTATATGCT
Statistics
Matches: 109, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
115 109 1.00
ACGTcount: A:0.30, C:0.13, G:0.23, T:0.34
Consensus pattern (115 bp):
GGATTTAGATCAGGGAAAAACGAAAGTTGTCAACTAGCCGCCCGATTTCATTTTGTACCGTCCGA
GATAAGTTTATAAGCAAATAGACGTGTTTATTTGGTAATTAAATGTTATT
Found at i:94805338 original size:24 final size:25
Alignment explanation
Indices: 94805292--94805338 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
94805282 TAGTGCAATG
* *
94805292 TATTAAACATTTAGATGTGATTACT
1 TATTAAACATATAGATGTAATTACT
*
94805317 TATTAAATATATA-ATGTAATTA
1 TATTAAACATATAGATGTAATTA
94805339 TATCATTAGA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 8 0.42
25 11 0.58
ACGTcount: A:0.43, C:0.04, G:0.09, T:0.45
Consensus pattern (25 bp):
TATTAAACATATAGATGTAATTACT
Found at i:94808585 original size:43 final size:44
Alignment explanation
Indices: 94808429--94808646 Score: 192
Period size: 43 Copynumber: 4.9 Consensus size: 44
94808419 AATTAAGAAA
* * *
94808429 TCTGAGCTCGTTGAGTGGTCCGAGTTCGTTATATATGTGAG-AA
1 TCTGAGCTCGTTGAGTGGTCCGAGTTCATTATAGATGTGAGCAT
* * * * * *
94808472 TCTGAACTTGTTGAGTGGTCCAAGTTCGTGATATATGT-AGCAT
1 TCTGAGCTCGTTGAGTGGTCCGAGTTCATTATAGATGTGAGCAT
* * * *
94808515 TC-GAGCTCATTGAGTGGTCTGAATTCATTATAGATGCGAGCAT
1 TCTGAGCTCGTTGAGTGGTCCGAGTTCATTATAGATGTGAGCAT
* * *
94808558 TC-GAGCTCGTTGAGTGGTCCGAGTTCATAATGGATGTGATACATGT
1 TCTGAGCTCGTTGAGTGGTCCGAGTTCATTATAGATGTGA-GCA--T
*
94808604 AACATCTGAGCTCGTTGAGAGGTCCGAGTTCATTATAGATGTG
1 ----TCTGAGCTCGTTGAGTGGTCCGAGTTCATTATAGATGTG
94808647 TTACATGTTA
Statistics
Matches: 140, Mismatches: 25, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
42 27 0.19
43 75 0.54
44 2 0.01
46 1 0.01
50 2 0.01
51 33 0.24
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.33
Consensus pattern (44 bp):
TCTGAGCTCGTTGAGTGGTCCGAGTTCATTATAGATGTGAGCAT
Found at i:94825119 original size:15 final size:15
Alignment explanation
Indices: 94825099--94825151 Score: 65
Period size: 15 Copynumber: 3.5 Consensus size: 15
94825089 GTATCGTATA
94825099 TTGGATTTCTAT-ATC
1 TTGGATTTCT-TCATC
94825114 TTGGATTTCTTCATC
1 TTGGATTTCTTCATC
*
94825129 TTGGATTT-TTCCGTC
1 TTGGATTTCTT-CATC
94825144 TTGGATTT
1 TTGGATTT
94825152 ATTTGTTTTG
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
14 3 0.09
15 32 0.91
ACGTcount: A:0.13, C:0.15, G:0.17, T:0.55
Consensus pattern (15 bp):
TTGGATTTCTTCATC
Found at i:94832169 original size:38 final size:38
Alignment explanation
Indices: 94832096--94832284 Score: 211
Period size: 38 Copynumber: 4.9 Consensus size: 38
94832086 GAATCCAGTC
* * *
94832096 ACCAGCACAAAGCGTGCGGAACTTTAAGCCCGGATATAGT
1 ACCAGCACGAAGCCTGCGGGA-TTTAA-CCCGGATATAGT
* *
94832136 ACCAGCACTAAGCCTGTGGGATTTAACCCGGATATA-T
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAGT
* * *
94832173 GATCAGCACGAAGCCTGCAGGATTTAACCCGGATATATT
1 -ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAGT
* *
94832212 ACCAGCACGAAGCCTGCGGGATTTAACCCAGTTAT-GTT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAG-T
* * *
94832250 ACCAGCATGAAGCCTGCGAGACTTAACCCGGATAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
94832285 GTATCGAGTG
Statistics
Matches: 128, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
37 1 0.01
38 104 0.81
39 6 0.05
40 17 0.13
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.21
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAGT
Found at i:94839481 original size:46 final size:46
Alignment explanation
Indices: 94839409--94839537 Score: 195
Period size: 46 Copynumber: 2.8 Consensus size: 46
94839399 TAACTAGGCA
* * *
94839409 TCCGAAGTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
94839455 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
94839501 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
94839538 GCGGGTTACA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.19, C:0.19, G:0.30, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:94841510 original size:30 final size:30
Alignment explanation
Indices: 94841474--94841534 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
94841464 TGACAGACAT
94841474 AGACCGAATAGGTCATTCTCTTATTCGTAA
1 AGACCGAATAGGTCATTCTCTTATTCGTAA
94841504 AGACCGAATAGGTCATTCTCTTATTCGTAA
1 AGACCGAATAGGTCATTCTCTTATTCGTAA
94841534 A
1 A
94841535 TATAGTAATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (30 bp):
AGACCGAATAGGTCATTCTCTTATTCGTAA
Found at i:94841820 original size:38 final size:38
Alignment explanation
Indices: 94841739--94841927 Score: 263
Period size: 38 Copynumber: 4.9 Consensus size: 38
94841729 GAATCCAGTC
* * *
94841739 ACCAGCACAAAGCCTGCGGAACTTTAAGCCCGGATATAGT
1 ACCAGCACGAAGCCTGCGGGA-TTTAA-CCCGGATATATT
*
94841779 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATATT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
94841817 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
94841855 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATA-T
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
* * * * *
94841892 AGCCAGTATGAAGCCTACAGGACTTAACCCGGATAT
1 A-CCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
94841928 GTATCGAGTG
Statistics
Matches: 139, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
37 2 0.01
38 113 0.81
39 5 0.04
40 19 0.14
ACGTcount: A:0.31, C:0.26, G:0.23, T:0.20
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
Found at i:94842877 original size:100 final size:100
Alignment explanation
Indices: 94842704--94842900 Score: 385
Period size: 100 Copynumber: 2.0 Consensus size: 100
94842694 CCAAATTTTC
94842704 TATTACCAAATAAATCACATATATATAACACTACTCATTACACATATACATCAACTATCAAAAAT
1 TATTACCAAATAAATCACATATATATAACACTACTCATTACACATATACATCAACTATCAAAAAT
*
94842769 TCCCACTCCTTAGCTATTGCCGAGTGCTTATAAGT
66 TCCCACTCCTTAGCTATTGCCGAATGCTTATAAGT
94842804 TATTACCAAATAAATCACATATATATAACACTACTCATTACACATATACATCAACTATCAAAAAT
1 TATTACCAAATAAATCACATATATATAACACTACTCATTACACATATACATCAACTATCAAAAAT
94842869 TCCCACTCCTTAGCTATTGCCGAATGCTTATA
66 TCCCACTCCTTAGCTATTGCCGAATGCTTATA
94842901 TAAGTCTTGA
Statistics
Matches: 96, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
100 96 1.00
ACGTcount: A:0.40, C:0.24, G:0.05, T:0.31
Consensus pattern (100 bp):
TATTACCAAATAAATCACATATATATAACACTACTCATTACACATATACATCAACTATCAAAAAT
TCCCACTCCTTAGCTATTGCCGAATGCTTATAAGT
Found at i:94845051 original size:6 final size:6
Alignment explanation
Indices: 94845040--94845119 Score: 65
Period size: 6 Copynumber: 13.3 Consensus size: 6
94845030 AATCCTCCTA
* * *
94845040 TTTTAT TTTTA- -TTTAT TCTTAT TTTTAT TCTTAT TTTATTT ATTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT-TAT -TTTTAT
* * * *
94845088 TCTTAT TTTTCT TTTGAT TTTTAT TTTCAT TT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TT
94845120 CAATTTTCTT
Statistics
Matches: 57, Mismatches: 13, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
4 4 0.07
6 46 0.81
7 4 0.07
8 3 0.05
ACGTcount: A:0.16, C:0.06, G:0.01, T:0.76
Consensus pattern (6 bp):
TTTTAT
Found at i:94855683 original size:39 final size:39
Alignment explanation
Indices: 94855638--94855758 Score: 172
Period size: 39 Copynumber: 3.1 Consensus size: 39
94855628 AAGCAAGACA
*
94855638 CTGGAAATGTATCCGGGCTAAAGACTCGCAAGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAAGCTTCGTG
* *
94855677 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAAGCTTCGTG
* * *
94855716 CTGGAAATCTATCCGGGCTAAAGTCCCGCAGGCCTT-GTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAAG-CTTCGTG
94855755 CTGG
1 CTGG
94855759 TAACATAATT
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
39 74 0.96
40 3 0.04
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGACCCGCAAGCTTCGTG
Found at i:94867408 original size:40 final size:39
Alignment explanation
Indices: 94867363--94867615 Score: 308
Period size: 40 Copynumber: 6.3 Consensus size: 39
94867353 ACGTTTTTAT
* * * *
94867363 TTTTTTAAAAACTCCGTTATAGATCGAGCATTAGTGGCG
1 TTTTTTAAAAACGCCGCTATAGATCGAGCATTAGCGGCA
* * *
94867402 TGTTTTTAAAAACGCCGTTATAGATCGAGAATTAGCGGCGC
1 T-TTTTTAAAAACGCCGCTATAGATCGAGCATTAGCGGC-A
** * *
94867443 TTTTTTAAAAGTGCCACTGTAGATCGAGCATTAGCGGCA
1 TTTTTTAAAAACGCCGCTATAGATCGAGCATTAGCGGCA
* *
94867482 TTTTTGAAAAAGCGCCGCTATAGATCGAGCATTAGCGGCT
1 TTTTTTAAAAA-CGCCGCTATAGATCGAGCATTAGCGGCA
94867522 TTTTTTAAAAAGCGCCGCTATAGATCGAGCATTAGCGGCA
1 TTTTTTAAAAA-CGCCGCTATAGATCGAGCATTAGCGGCA
* * *
94867562 TTTTTAAAAAAGTGCCGCTATAGATTGAGCATTAGCGGCA
1 TTTTTTAAAAA-CGCCGCTATAGATCGAGCATTAGCGGCA
94867602 TTTTTTTAAAAACG
1 -TTTTTTAAAAACG
94867616 TTGCAAAAAA
Statistics
Matches: 186, Mismatches: 24, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
39 10 0.05
40 165 0.89
41 11 0.06
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (39 bp):
TTTTTTAAAAACGCCGCTATAGATCGAGCATTAGCGGCA
Found at i:94867485 original size:120 final size:120
Alignment explanation
Indices: 94867361--94867615 Score: 354
Period size: 120 Copynumber: 2.1 Consensus size: 120
94867351 CGACGTTTTT
* * * *
94867361 ATTTTTTTAAAAACTCCGTTATAGATCGAGCATTAGTGGCGTGTTTTTAAAAA-CGCCGTTATAG
1 ATTTTTTTAAAAACGCCGCTATAGATCGAGCATTAGCGGC-TGTTTTTAAAAAGCGCCGCTATAG
* * *
94867425 ATCGAGAATTAGCGGCGCTTTTT-TAAAAGTGCCACTGTAGATCGAGCATTAGCGGC
65 ATCGAGAATTAGCGGC-ATTTTTAAAAAAGTGCCACTATAGATCGAGCATTAGCGGC
* *
94867481 A-TTTTTGAAAAAGCGCCGCTATAGATCGAGCATTAGCGGCTTTTTTTAAAAAGCGCCGCTATAG
1 ATTTTTTTAAAAA-CGCCGCTATAGATCGAGCATTAGCGGCTGTTTTTAAAAAGCGCCGCTATAG
* * *
94867545 ATCGAGCATTAGCGGCATTTTTAAAAAAGTGCCGCTATAGATTGAGCATTAGCGGC
65 ATCGAGAATTAGCGGCATTTTTAAAAAAGTGCCACTATAGATCGAGCATTAGCGGC
94867601 ATTTTTTTAAAAACG
1 ATTTTTTTAAAAACG
94867616 TTGCAAAAAA
Statistics
Matches: 118, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
119 26 0.22
120 82 0.69
121 10 0.08
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (120 bp):
ATTTTTTTAAAAACGCCGCTATAGATCGAGCATTAGCGGCTGTTTTTAAAAAGCGCCGCTATAGA
TCGAGAATTAGCGGCATTTTTAAAAAAGTGCCACTATAGATCGAGCATTAGCGGC
Found at i:94867940 original size:14 final size:14
Alignment explanation
Indices: 94867921--94867955 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
94867911 AATTATCATT
94867921 TGGTTTAGGGTATA
1 TGGTTTAGGGTATA
*
94867935 TGGTTTAGGGTTTA
1 TGGTTTAGGGTATA
*
94867949 TGATTTA
1 TGGTTTA
94867956 TGAGTTTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.20, C:0.00, G:0.31, T:0.49
Consensus pattern (14 bp):
TGGTTTAGGGTATA
Found at i:94867991 original size:21 final size:22
Alignment explanation
Indices: 94867967--94868011 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
94867957 GAGTTTATAT
* *
94867967 TTTAAGGTTTAGGATTT-AGGG
1 TTTAAAGTTTAAGATTTAAGGG
94867988 TTTAAAGTTTAAGATTTAAGGG
1 TTTAAAGTTTAAGATTTAAGGG
94868010 TT
1 TT
94868012 AGTGGTTAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.29, C:0.00, G:0.27, T:0.44
Consensus pattern (22 bp):
TTTAAAGTTTAAGATTTAAGGG
Found at i:94868018 original size:7 final size:7
Alignment explanation
Indices: 94868007--94868080 Score: 76
Period size: 7 Copynumber: 10.3 Consensus size: 7
94867997 TAAGATTTAA
94868007 GGGTTAG
1 GGGTTAG
*
94868014 TGGTTAG
1 GGGTTAG
*
94868021 TGGTTAG
1 GGGTTAG
94868028 GGGTTAG
1 GGGTTAG
94868035 GGGTTAAG
1 GGGTT-AG
**
94868043 GGAATAG
1 GGGTTAG
94868050 GGGTTAG
1 GGGTTAG
94868057 GGGTTAAG
1 GGGTT-AG
*
94868065 GGGATAG
1 GGGTTAG
*
94868072 AGGTTAG
1 GGGTTAG
94868079 GG
1 GG
94868081 ATTTATAGTT
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
7 44 0.80
8 11 0.20
ACGTcount: A:0.22, C:0.00, G:0.51, T:0.27
Consensus pattern (7 bp):
GGGTTAG
Found at i:94868053 original size:22 final size:22
Alignment explanation
Indices: 94868025--94868080 Score: 94
Period size: 22 Copynumber: 2.5 Consensus size: 22
94868015 GGTTAGTGGT
94868025 TAGGGGTTAGGGGTTAAGGGAA
1 TAGGGGTTAGGGGTTAAGGGAA
*
94868047 TAGGGGTTAGGGGTTAAGGGGA
1 TAGGGGTTAGGGGTTAAGGGAA
*
94868069 TAGAGGTTAGGG
1 TAGGGGTTAGGG
94868081 ATTTATAGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.25, C:0.00, G:0.52, T:0.23
Consensus pattern (22 bp):
TAGGGGTTAGGGGTTAAGGGAA
Found at i:94868144 original size:30 final size:30
Alignment explanation
Indices: 94868109--94868188 Score: 144
Period size: 30 Copynumber: 2.7 Consensus size: 30
94868099 AATATTTTAA
*
94868109 GGTTTATGGATTATGGGTTTAGTGATTATG
1 GGTTTAGGGATTATGGGTTTAGTGATTATG
94868139 GGTTTAGGGATTATGGGTTTAGTGATTATG
1 GGTTTAGGGATTATGGGTTTAGTGATTATG
94868169 GGTTTAGGGATTAT-GGTTTA
1 GGTTTAGGGATTATGGGTTTA
94868189 TGGTTTAAGG
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
29 6 0.12
30 43 0.88
ACGTcount: A:0.20, C:0.00, G:0.35, T:0.45
Consensus pattern (30 bp):
GGTTTAGGGATTATGGGTTTAGTGATTATG
Found at i:94868201 original size:15 final size:14
Alignment explanation
Indices: 94868109--94868188 Score: 108
Period size: 15 Copynumber: 5.4 Consensus size: 14
94868099 AATATTTTAA
94868109 GGTTTATGGATTATG
1 GGTTTA-GGATTATG
94868124 GGTTTAGTGATTATG
1 GGTTTAG-GATTATG
94868139 GGTTTAGGGATTATG
1 GGTTTA-GGATTATG
94868154 GGTTTAGTGATTATG
1 GGTTTAG-GATTATG
94868169 GGTTTAGGGATTAT-
1 GGTTTA-GGATTATG
94868183 GGTTTA
1 GGTTTA
94868189 TGGTTTAAGG
Statistics
Matches: 61, Mismatches: 0, Indels: 9
0.87 0.00 0.13
Matches are distributed among these distances:
14 8 0.13
15 51 0.84
16 2 0.03
ACGTcount: A:0.20, C:0.00, G:0.35, T:0.45
Consensus pattern (14 bp):
GGTTTAGGATTATG
Found at i:94868207 original size:21 final size:22
Alignment explanation
Indices: 94868183--94868229 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 22
94868173 TAGGGATTAT
* * *
94868183 GGTTTATGGTTTAAGGGTTG-G
1 GGTTTAAGATTTAAGGGTTAGG
*
94868204 GGTTTAAGATTTAGGGGTTAGG
1 GGTTTAAGATTTAAGGGTTAGG
94868226 GGTT
1 GGTT
94868230 AGGGGATAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.17, C:0.00, G:0.43, T:0.40
Consensus pattern (22 bp):
GGTTTAAGATTTAAGGGTTAGG
Found at i:94868233 original size:14 final size:14
Alignment explanation
Indices: 94868193--94868271 Score: 70
Period size: 14 Copynumber: 5.6 Consensus size: 14
94868183 GGTTTATGGT
94868193 TTAAGGGTT-GGGG
1 TTAAGGGTTAGGGG
**
94868206 TTTAAGATTTAGGGG
1 -TTAAGGGTTAGGGG
*
94868221 TTAGGGGTTAGGGG
1 TTAAGGGTTAGGGG
* * *
94868235 ATAAGGGTTAAGTG
1 TTAAGGGTTAGGGG
*
94868249 TTAAGTGTTAGGGG
1 TTAAGGGTTAGGGG
*
94868263 TTTAGGGTT
1 TTAAGGGTT
94868272 TAAGTGTTAA
Statistics
Matches: 49, Mismatches: 15, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
14 45 0.92
15 4 0.08
ACGTcount: A:0.22, C:0.00, G:0.43, T:0.35
Consensus pattern (14 bp):
TTAAGGGTTAGGGG
Found at i:94868251 original size:28 final size:29
Alignment explanation
Indices: 94868220--94868284 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 29
94868210 AGATTTAGGG
*
94868220 GTTAGGGGTTAGGGGATAAGGG-TTAAGT
1 GTTAAGGGTTAGGGGATAAGGGTTTAAGT
* * *
94868248 GTTAAGTGTTAGGGGTTTAGGGTTTAAGT
1 GTTAAGGGTTAGGGGATAAGGGTTTAAGT
94868277 GTTAAGGG
1 GTTAAGGG
94868285 AACATATGTT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
28 18 0.58
29 13 0.42
ACGTcount: A:0.23, C:0.00, G:0.43, T:0.34
Consensus pattern (29 bp):
GTTAAGGGTTAGGGGATAAGGGTTTAAGT
Found at i:94868281 original size:7 final size:7
Alignment explanation
Indices: 94868218--94868284 Score: 53
Period size: 7 Copynumber: 9.4 Consensus size: 7
94868208 TAAGATTTAG
*
94868218 GGGTTAG
1 GGGTTAA
*
94868225 GGGTTAG
1 GGGTTAA
*
94868232 GGGATAA
1 GGGTTAA
94868239 GGGTTAA
1 GGGTTAA
*
94868246 GTGTTAA
1 GGGTTAA
* *
94868253 GTGTTAG
1 GGGTTAA
*
94868260 GGGTTTA
1 GGGTTAA
94868267 GGGTTTAA
1 GGG-TTAA
*
94868275 GTGTTAA
1 GGGTTAA
94868282 GGG
1 GGG
94868285 AACATATGTT
Statistics
Matches: 48, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
7 43 0.90
8 5 0.10
ACGTcount: A:0.22, C:0.00, G:0.45, T:0.33
Consensus pattern (7 bp):
GGGTTAA
Found at i:94873364 original size:20 final size:20
Alignment explanation
Indices: 94873339--94873385 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
94873329 CCTTTTCGTG
94873339 TCAGTTTTTTTCATTTTATA
1 TCAGTTTTTTTCATTTTATA
* *
94873359 TCAGTTTTTTTCTTTTTGTA
1 TCAGTTTTTTTCATTTTATA
*
94873379 TTAGTTT
1 TCAGTTT
94873386 GTTAGTAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.15, C:0.09, G:0.09, T:0.68
Consensus pattern (20 bp):
TCAGTTTTTTTCATTTTATA
Found at i:94873486 original size:16 final size:16
Alignment explanation
Indices: 94873461--94873495 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
94873451 AATTTCATTT
* *
94873461 TATGTGTGAATGCTTA
1 TATGTATGAATGCCTA
94873477 TATGTATGAATGCCTA
1 TATGTATGAATGCCTA
94873493 TAT
1 TAT
94873496 CTATCTTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.43
Consensus pattern (16 bp):
TATGTATGAATGCCTA
Found at i:94873820 original size:30 final size:30
Alignment explanation
Indices: 94873786--94873845 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
94873776 TATTGTAGTC
*
94873786 CCATATTTTATGATCTGCTAGATGATTTGG
1 CCATATTTTATGACCTGCTAGATGATTTGG
94873816 CCATATTTTATGACCTGCTAGATGATTTGG
1 CCATATTTTATGACCTGCTAGATGATTTGG
94873846 TTACATCCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.23, C:0.15, G:0.20, T:0.42
Consensus pattern (30 bp):
CCATATTTTATGACCTGCTAGATGATTTGG
Found at i:94874685 original size:15 final size:15
Alignment explanation
Indices: 94874665--94874698 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
94874655 TAATTTGATG
* *
94874665 TTTGGATGTTCCATT
1 TTTGGATGTACAATT
94874680 TTTGGATGTACAATT
1 TTTGGATGTACAATT
94874695 TTTG
1 TTTG
94874699 TTCATCCGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.09, G:0.21, T:0.53
Consensus pattern (15 bp):
TTTGGATGTACAATT
Found at i:94875912 original size:11 final size:11
Alignment explanation
Indices: 94875892--94875920 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
94875882 TTTAATTTGA
94875892 TAAT-GAATTT
1 TAATAGAATTT
94875902 TAATAGAATTT
1 TAATAGAATTT
94875913 TAATAGAA
1 TAATAGAA
94875921 AATTTTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.22
11 14 0.78
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.41
Consensus pattern (11 bp):
TAATAGAATTT
Found at i:94881607 original size:40 final size:40
Alignment explanation
Indices: 94881545--94881741 Score: 283
Period size: 40 Copynumber: 5.0 Consensus size: 40
94881535 CTAAGATCCG
* * *
94881545 AAGGCATTTGTGCTAGTGACTATATCCGGGTTAAGTCCCA
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCA
*
94881585 AAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGT-CCA
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCA
* *
94881624 GAAGGCATTTGTGCAAGTTACTATATCCAGGCTAAGTCCCA
1 -AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCA
*
94881665 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCA
**
94881705 AAGGCATTTGTGCGAGTTGTTATATCC-GGCTAA-TCCC
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
94881742 GAATGTACTT
Statistics
Matches: 145, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
38 4 0.03
39 9 0.06
40 129 0.89
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (40 bp):
AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCA
Found at i:94884062 original size:26 final size:26
Alignment explanation
Indices: 94884026--94884076 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
94884016 CGTAAATAGA
94884026 GTATTTCAGTACAGTCTACTACCTAG
1 GTATTTCAGTACAGTCTACTACCTAG
*
94884052 GTATTTTAGTACAGTCTACTACCTA
1 GTATTTCAGTACAGTCTACTACCTA
94884077 CAATAGTCTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (26 bp):
GTATTTCAGTACAGTCTACTACCTAG
Found at i:94888087 original size:45 final size:45
Alignment explanation
Indices: 94888007--94888122 Score: 126
Period size: 45 Copynumber: 2.6 Consensus size: 45
94887997 AATGAACTCG
* ** *
94888007 GACCAACTCAACGAGCTCGGATGCCTCATACATATCACGAACCCGA
1 GACCAACTCAACGAGCTCAGATTTCTCACACATATCACGAA-CCGA
* * * **
94888053 -ACCAACTCAACGAGTTCAGATTTCTCACATATATCATGAACTTA
1 GACCAACTCAACGAGCTCAGATTTCTCACACATATCACGAACCGA
*
94888097 GACCAACTCAATGAGCTCAGATTTCT
1 GACCAACTCAACGAGCTCAGATTTCT
94888123 TAATTCCTAG
Statistics
Matches: 58, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
44 2 0.03
45 56 0.97
ACGTcount: A:0.34, C:0.29, G:0.14, T:0.23
Consensus pattern (45 bp):
GACCAACTCAACGAGCTCAGATTTCTCACACATATCACGAACCGA
Found at i:94908335 original size:79 final size:81
Alignment explanation
Indices: 94908233--94908417 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
94908223 GCTCCTCGTT
* *
94908233 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
94908296 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
94908313 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
94908377 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
94908393 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
94908418 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:94908417 original size:40 final size:40
Alignment explanation
Indices: 94908233--94908417 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
94908223 GCTCCTCGTT
* *
94908233 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
94908273 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
94908313 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
94908352 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
94908393 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
94908418 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 80 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:94910432 original size:28 final size:29
Alignment explanation
Indices: 94910400--94910514 Score: 146
Period size: 29 Copynumber: 4.0 Consensus size: 29
94910390 TACCTATATC
* *
94910400 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
94910428 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
*
94910457 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
94910486 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
94910514 T
1 T
94910515 TCATGCTTAC
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
28 27 0.35
29 49 0.64
30 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:94910744 original size:8 final size:8
Alignment explanation
Indices: 94910733--94910761 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
94910723 ACTTTCAGCT
94910733 TTTCGGCA
1 TTTCGGCA
94910741 TTTCGGCA
1 TTTCGGCA
94910749 TTTCGGCA
1 TTTCGGCA
94910757 TTTCG
1 TTTCG
94910762 ACTTTTGCCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.10, C:0.24, G:0.24, T:0.41
Consensus pattern (8 bp):
TTTCGGCA
Found at i:94917016 original size:47 final size:47
Alignment explanation
Indices: 94916955--94917070 Score: 207
Period size: 47 Copynumber: 2.5 Consensus size: 47
94916945 TGTGTGCTAG
94916955 TGTAAGA-CATGTCTGGGACATGCATAGGCCACATTATGAGAGCCAA
1 TGTAAGACCATGTCTGGGACATGCATAGGCCACATTATGAGAGCCAA
*
94917001 TGTAAGACCATGTCTGGGACATGCATAGGCCACATTATGAGAGCCAG
1 TGTAAGACCATGTCTGGGACATGCATAGGCCACATTATGAGAGCCAA
*
94917048 TGTAAGACCATCTCTGGGACATG
1 TGTAAGACCATGTCTGGGACATG
94917071 GTATTAGCAT
Statistics
Matches: 67, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
46 7 0.10
47 60 0.90
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGCATAGGCCACATTATGAGAGCCAA
Found at i:94917179 original size:46 final size:44
Alignment explanation
Indices: 94917094--94917240 Score: 136
Period size: 46 Copynumber: 3.2 Consensus size: 44
94917084 GACAAGAACT
* ** *
94917094 AGTGTAAAACATGTCCGGGACATGCATCAGCCTCGAGATGTAAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCAGCCTCAAGATGT--GCC
* *
94917140 AGTGTAAGACATGTCTAGGACATGCATCTG-CTACAAGATGTGTC
1 AGTGTAAGACATGTCTAGGACATGCATCAGCCT-CAAGATGTGCC
* * *
94917184 AGTGTAAGACCATGTCTAGGACATGGCATC-GACTTAATGGATGAGCC
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCAGCCTCAA--GATGTGCC
94917231 AGTGTAAGAC
1 AGTGTAAGAC
94917241 TGTGTCTGGG
Statistics
Matches: 86, Mismatches: 9, Indels: 12
0.80 0.08 0.11
Matches are distributed among these distances:
44 11 0.13
45 19 0.22
46 41 0.48
47 15 0.17
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.23
Consensus pattern (44 bp):
AGTGTAAGACATGTCTAGGACATGCATCAGCCTCAAGATGTGCC
Found at i:94917247 original size:47 final size:44
Alignment explanation
Indices: 94917136--94917261 Score: 130
Period size: 47 Copynumber: 2.8 Consensus size: 44
94917126 TCGAGATGTA
94917136 AGCCAGTGTAAGACATGTCTAGGACAT-GCATCTGCTACAAGATG
1 AGCCAGTGTAAGACATGTCTAGGACATGGCATC-GCTACAAGATG
* * *
94917180 TGTCAGTGTAAGACCATGTCTAGGACATGGCATCGACTTA-ATGGATG
1 AGCCAGTGTAAGA-CATGTCTAGGACATGGCATCG-C-TACA-AGATG
* * *
94917227 AGCCAGTGTAAGACTGTGTCTGGGACACGGCATCG
1 AGCCAGTGTAAGAC-ATGTCTAGGACATGGCATCG
94917262 GCATTATACC
Statistics
Matches: 68, Mismatches: 8, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
44 11 0.16
45 15 0.22
46 8 0.12
47 34 0.50
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (44 bp):
AGCCAGTGTAAGACATGTCTAGGACATGGCATCGCTACAAGATG
Found at i:94919663 original size:23 final size:23
Alignment explanation
Indices: 94919633--94919679 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
94919623 ATTGTAATGC
94919633 AAGAATAACTTAGGCATGATTTT
1 AAGAATAACTTAGGCATGATTTT
*
94919656 AAGAATAACTTAGGTATGATTTT
1 AAGAATAACTTAGGCATGATTTT
94919679 A
1 A
94919680 CTTAATCAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.40, C:0.06, G:0.17, T:0.36
Consensus pattern (23 bp):
AAGAATAACTTAGGCATGATTTT
Found at i:94928718 original size:29 final size:30
Alignment explanation
Indices: 94928661--94928718 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
94928651 CACCCCTAAA
* * * *
94928661 ATATTTGCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCCTCAAATTTTC
94928691 ATATTTACACT-TTAATCCCTCAAATTTT
1 ATATTTACACTATTAATCCCTCAAATTTT
94928719 TAGTATTTGT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 14 0.58
30 10 0.42
ACGTcount: A:0.28, C:0.22, G:0.03, T:0.47
Consensus pattern (30 bp):
ATATTTACACTATTAATCCCTCAAATTTTC
Found at i:94929203 original size:46 final size:45
Alignment explanation
Indices: 94929068--94929241 Score: 145
Period size: 46 Copynumber: 3.8 Consensus size: 45
94929058 TTATTTGTGT
* * * *
94929068 GCTAGTGTAAGACATGTTTGGGACATGTATCGGCCAT-ATTATGTGA
1 GCTAGTGTAAGACATGTATGGGACATGCATCGGCC-TGA-GATGAGA
* * *
94929114 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGA
1 GCTAGTGTAAGA-CATGTATGGGACAT-GCATCGGC-CTGAGATGAGA
*
94929162 GCTAGTGTAAGACATGTATGAGACATGCATCGGCCTCGAGATGTA-A
1 GCTAGTGTAAGACATGTATGGGACATGCATCGGCCT-GAGATG-AGA
* * * ** *
94929208 GCCAATGAAAGACATGCCTAGGACATGCATCGGC
1 GCTAGTGTAAGACATGTATGGGACATGCATCGGC
94929242 TACAAGATGT
Statistics
Matches: 105, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
45 1 0.01
46 53 0.50
47 26 0.25
48 24 0.23
49 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTATGGGACATGCATCGGCCTGAGATGAGA
Found at i:94929256 original size:27 final size:27
Alignment explanation
Indices: 94929225--94929278 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
94929215 AAAGACATGC
*
94929225 CTAGGACATGCATCGGCTACAAGATGT
1 CTAGGACATGCATCGACTACAAGATGT
94929252 CTAGGACATGCATCGACTACAAGATGT
1 CTAGGACATGCATCGACTACAAGATGT
94929279 GTCAGTGTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.22
Consensus pattern (27 bp):
CTAGGACATGCATCGACTACAAGATGT
Found at i:94946666 original size:24 final size:24
Alignment explanation
Indices: 94946615--94946679 Score: 69
Period size: 24 Copynumber: 2.8 Consensus size: 24
94946605 ATCATGAATA
* * *
94946615 AATAAATGAG-TCATAAACGAGTC
1 AATAAATGAGCTTATAAACAAGCC
94946638 AATAAATGAGCTTATAAACAAGCC
1 AATAAATGAGCTTATAAACAAGCC
* * *
94946662 GATAAACGAGCTTTTAAA
1 AATAAATGAGCTTATAAA
94946680 TGAGCTTGTT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
23 10 0.29
24 25 0.71
ACGTcount: A:0.48, C:0.14, G:0.15, T:0.23
Consensus pattern (24 bp):
AATAAATGAGCTTATAAACAAGCC
Found at i:94950944 original size:291 final size:291
Alignment explanation
Indices: 94950420--94951001 Score: 1148
Period size: 291 Copynumber: 2.0 Consensus size: 291
94950410 ATCTATCCAA
94950420 GCTATTTTGAAATGGCCCTCGAACAACACGGTTGAGACACACGCCCGTGTCTCTGCCCAAGTGGG
1 GCTATTTTGAAATGGCCCTCGAACAACACGGTTGAGACACACGCCCGTGTCTCTGCCCAAGTGGG
94950485 CAAAAATAGGCCATTTATAAGGCCAATTTGCCACCCATTAAGGGTCCTCCCTACAAAAAAAATAA
66 CAAAAATAGGCCATTTATAAGGCCAATTTGCCACCCATTAAGGGTCCTCCCTACAAAAAAAATAA
94950550 ACATCAATTGCATACCGGATGCTTAACCATTTCACAACCAATACATACACCAATAATGTCATATA
131 ACATCAATTGCATACCGGATGCTTAACCATTTCACAACCAATACATACACCAATAATGTCATATA
94950615 ATTACCAACCAAATTCAAGCTTATTCACCATCCCAAATCATACCAAATCATGAGCCAAAGTCATG
196 ATTACCAACCAAATTCAAGCTTATTCACCATCCCAAATCATACCAAATCATGAGCCAAAGTCATG
94950680 CCAAAACATA-TGATCCACAATCTTAAATTTG
261 CCAAAACATATTG-TCCACAATCTTAAATTTG
94950711 GCTATTTTGAAATGGCCCTCGAACAACACGGTTGAGACACACGCCCGTGTCTCTGCCCAAGTGGG
1 GCTATTTTGAAATGGCCCTCGAACAACACGGTTGAGACACACGCCCGTGTCTCTGCCCAAGTGGG
94950776 CAAAAATAGGCCATTTATAAGGCCAATTTGCCACCCATTAAGGGTCCTCCCTACAAAAAAAATAA
66 CAAAAATAGGCCATTTATAAGGCCAATTTGCCACCCATTAAGGGTCCTCCCTACAAAAAAAATAA
94950841 ACATCAATTGCATACCGGATGCTTAACCATTTCACAACCAATACATACACCAATAATGTCATATA
131 ACATCAATTGCATACCGGATGCTTAACCATTTCACAACCAATACATACACCAATAATGTCATATA
94950906 ATTACCAACCAAATTCAAGCTTATTCACCATCCCAAATCATACCAAATCATGAGCCAAAGTCATG
196 ATTACCAACCAAATTCAAGCTTATTCACCATCCCAAATCATACCAAATCATGAGCCAAAGTCATG
94950971 CCAAAACATATTGTCCACAATCTTAAATTTG
261 CCAAAACATATTGTCCACAATCTTAAATTTG
94951002 CTTCATTCAA
Statistics
Matches: 290, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
291 288 0.99
292 2 0.01
ACGTcount: A:0.37, C:0.27, G:0.13, T:0.24
Consensus pattern (291 bp):
GCTATTTTGAAATGGCCCTCGAACAACACGGTTGAGACACACGCCCGTGTCTCTGCCCAAGTGGG
CAAAAATAGGCCATTTATAAGGCCAATTTGCCACCCATTAAGGGTCCTCCCTACAAAAAAAATAA
ACATCAATTGCATACCGGATGCTTAACCATTTCACAACCAATACATACACCAATAATGTCATATA
ATTACCAACCAAATTCAAGCTTATTCACCATCCCAAATCATACCAAATCATGAGCCAAAGTCATG
CCAAAACATATTGTCCACAATCTTAAATTTG
Found at i:94958722 original size:27 final size:27
Alignment explanation
Indices: 94958692--94958869 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
94958682 ATATTGAGTC
* * * *
94958692 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
94958719 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
94958746 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
94958774 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
94958801 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
94958828 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
94958855 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
94958870 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:94958831 original size:82 final size:81
Alignment explanation
Indices: 94958713--94958868 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
94958703 TGCTATATAA
* *
94958713 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
94958778 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
94958795 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
94958859 CACTTAGTGC
65 CACTTAGTGC
94958869 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:94971045 original size:43 final size:44
Alignment explanation
Indices: 94970920--94971046 Score: 138
Period size: 43 Copynumber: 3.0 Consensus size: 44
94970910 CGGAAAGCTC
94970920 ATAT-AATGCCAATGTCCCAGACGTGGTCTTACATGT-AATCAA
1 ATATCAATGCCAATGTCCCAGACGTGGTCTTACATGTAAATCAA
* * * * * **
94970962 ATATCGATACCAATGTCCTAGACAG-GATCGTACA-CAAAATCAA
1 ATATCAATGCCAATGTCCCAGAC-GTGGTCTTACATGTAAATCAA
*
94971005 ATA-CAATGTCAATGTCCCAGACGTGGTCTTACATGTAAATCA
1 ATATCAATGCCAATGTCCCAGACGTGGTCTTACATGTAAATCA
94971047 TAAGTCAATT
Statistics
Matches: 65, Mismatches: 15, Indels: 9
0.73 0.17 0.10
Matches are distributed among these distances:
41 1 0.02
42 26 0.40
43 37 0.57
44 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.26
Consensus pattern (44 bp):
ATATCAATGCCAATGTCCCAGACGTGGTCTTACATGTAAATCAA
Found at i:94977012 original size:40 final size:40
Alignment explanation
Indices: 94976929--94977231 Score: 405
Period size: 40 Copynumber: 7.6 Consensus size: 40
94976919 TTGAATGCTG
* * * * * *
94976929 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
94976969 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
94977009 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
94977049 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
94977089 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
94977129 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
94977169 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
94977208 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
94977232 TGAACGAGGA
Statistics
Matches: 241, Mismatches: 19, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 35 0.15
40 198 0.82
41 8 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:94986491 original size:30 final size:30
Alignment explanation
Indices: 94986397--94986492 Score: 74
Period size: 30 Copynumber: 3.2 Consensus size: 30
94986387 TTTGAAGCCA
*
94986397 TAAAGAGTAAATAGTGGTAGAGTTGTATTT
1 TAAAAAGTAAATAGTGGTAGAGTTGTATTT
* ** * *
94986427 TAAAAAATAAA-AGT--TA-TTTTTTAAAAGTTA
1 TAAAAAGTAAATAGTGGTAGAGTTGT---A-TTT
94986457 TAAAAAGTAAATAGTGGTAGAGTTGTATTT
1 TAAAAAGTAAATAGTGGTAGAGTTGTATTT
94986487 TAAAAA
1 TAAAAA
94986493 AATCAATGTC
Statistics
Matches: 47, Mismatches: 11, Indels: 16
0.64 0.15 0.22
Matches are distributed among these distances:
26 3 0.06
27 2 0.04
29 4 0.09
30 29 0.62
31 4 0.09
33 2 0.04
34 3 0.06
ACGTcount: A:0.46, C:0.00, G:0.18, T:0.36
Consensus pattern (30 bp):
TAAAAAGTAAATAGTGGTAGAGTTGTATTT
Found at i:95000159 original size:40 final size:40
Alignment explanation
Indices: 95000099--95000278 Score: 292
Period size: 40 Copynumber: 4.5 Consensus size: 40
95000089 TTCGGATGAC
*
95000099 ATCCGGGCTAAGTCCCGAAGGCATTTGTCCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
95000139 ATCCAGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
95000179 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
95000219 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAT
*
95000259 ATCC-GGCTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
95000279 TACTTGGGTT
Statistics
Matches: 132, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 15 0.11
40 115 0.87
41 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.27
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
Found at i:95003741 original size:40 final size:40
Alignment explanation
Indices: 95003697--95003958 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
95003687 GCTCCTCGTT
* *
95003697 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
95003737 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
95003777 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
95003816 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
95003855 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
95003894 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
95003935 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
95003959 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:95007975 original size:112 final size:112
Alignment explanation
Indices: 95007778--95008001 Score: 430
Period size: 112 Copynumber: 2.0 Consensus size: 112
95007768 ACACTTACTG
95007778 AACTTAGCATATAACTGCTTATCCCGCAAAATTTGCAACACTAGCCTCAGATGCTCAGCATGTTC
1 AACTTAGCATATAACTGCTTATCCCGCAAAATTTGCAACACTAGCCTCAGATGCTCAGCATGTTC
95007843 GGTCTCATCTCTTGAATAGACCAAGATATCATCAATGAACACAACTA
66 GGTCTCATCTCTTGAATAGACCAAGATATCATCAATGAACACAACTA
95007890 AACTTAGCATATAACTGCTTATCCCGCAAAATTTGCAACACTAGCCTCAGATGCTCAGCATGTTC
1 AACTTAGCATATAACTGCTTATCCCGCAAAATTTGCAACACTAGCCTCAGATGCTCAGCATGTTC
* *
95007955 TGTCTCATCTCTTGAATAGACCAAGATGTCATCAATGAACACAACTA
66 GGTCTCATCTCTTGAATAGACCAAGATATCATCAATGAACACAACTA
95008002 CGAACCGATC
Statistics
Matches: 110, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
112 110 1.00
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.27
Consensus pattern (112 bp):
AACTTAGCATATAACTGCTTATCCCGCAAAATTTGCAACACTAGCCTCAGATGCTCAGCATGTTC
GGTCTCATCTCTTGAATAGACCAAGATATCATCAATGAACACAACTA
Found at i:95011643 original size:83 final size:83
Alignment explanation
Indices: 95011504--95011671 Score: 327
Period size: 83 Copynumber: 2.0 Consensus size: 83
95011494 AGCTGGTGTG
95011504 ATGACTCCAATGACGGCCCGATCACGCAAAAAGAGACGAGTCCAAGAAACCTAAAATAGGTGACA
1 ATGACTCCAATGACGGCCCGATCACGCAAAAAGAGACGAGTCCAAGAAACCTAAAATAGGTGACA
95011569 AGGAAACACCGAGTGAGT
66 AGGAAACACCGAGTGAGT
95011587 ATGACTCCAATGACGGCCCGATCACGCAAAAAGAGACGAGTCCAAGAAACCTAAAATAGGTGACA
1 ATGACTCCAATGACGGCCCGATCACGCAAAAAGAGACGAGTCCAAGAAACCTAAAATAGGTGACA
*
95011652 AGGAAACATCGAGTGAGT
66 AGGAAACACCGAGTGAGT
95011670 AT
1 AT
95011672 ATAACTCAGT
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 84 1.00
ACGTcount: A:0.41, C:0.22, G:0.24, T:0.13
Consensus pattern (83 bp):
ATGACTCCAATGACGGCCCGATCACGCAAAAAGAGACGAGTCCAAGAAACCTAAAATAGGTGACA
AGGAAACACCGAGTGAGT
Found at i:95012179 original size:28 final size:28
Alignment explanation
Indices: 95012116--95012238 Score: 167
Period size: 28 Copynumber: 4.4 Consensus size: 28
95012106 ATATTAAGTC
*
95012116 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
95012143 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
**
95012171 CGCACACTTAGTGCTACGTAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
95012199 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
95012228 CGCACACTTAG
1 CGCACACTTAG
95012239 CGCCAATCTC
Statistics
Matches: 85, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 22 0.26
28 47 0.55
29 16 0.19
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:95022739 original size:37 final size:37
Alignment explanation
Indices: 95022689--95022767 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
95022679 TTATTACGAA
* * *
95022689 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
95022726 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
95022763 GTCTT
1 GTCTT
95022768 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:95023005 original size:49 final size:49
Alignment explanation
Indices: 95022940--95023185 Score: 451
Period size: 49 Copynumber: 5.1 Consensus size: 49
95022930 GCCCTGTCAC
95022940 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
* *
95022989 ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
95023038 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
*
95023087 ATATATACACTTTCACATTCATCACATCGGCCATTAGGTCTTATCAC--
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
95023134 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
95023183 ATA
1 ATA
95023186 CTATCATGTA
Statistics
Matches: 189, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
47 46 0.24
49 143 0.76
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.33
Consensus pattern (49 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
Found at i:95026595 original size:46 final size:46
Alignment explanation
Indices: 95026334--95026595 Score: 275
Period size: 46 Copynumber: 5.6 Consensus size: 46
95026324 GTGCTAATGC
* *
95026334 CATGTCCCAGACATGGTCTTACACT-GACTATCATCTCGT-ACTCGATG
1 CATGTCCCAGACAT-GTCTTACACTAG-CTCTCATCTCGTGGC-CGATG
** * *
95026381 CATGTCCCAGACATGTCTTACACCGGCT-T-ATGTCTTGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCA--TCTCGTGGCCGATG
* * *
95026427 CATGTCCCAGACATGTCTTACATTAGCACTCATCTCGTTGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGTGGCCGATG
* *
95026473 CATGTCCCAGACATGTCTTACACTAGCACTCGTCTCGAT-GCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCG-TGGCCGATG
* *
95026519 CTATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-GTGGTCGATG
1 C-ATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-CTCGTGGCCGATG
*
95026567 AATGTCCCAGACATGTCTTACACTAGCTC
1 CATGTCCCAGACATGTCTTACACTAGCTC
95026596 ACAATAACCC
Statistics
Matches: 186, Mismatches: 18, Indels: 23
0.82 0.08 0.10
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 113 0.61
47 45 0.24
48 25 0.13
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGTGGCCGATG
Found at i:95030057 original size:27 final size:27
Alignment explanation
Indices: 95030027--95030084 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
95030017 TATGTCGGTC
* * *
95030027 ATTTTACGCTACAAGGGTATTTCAGTA
1 ATTTTACACTACAAGAGTATTTCAATA
95030054 ATTTTACACTACAAGAGTATTTCAATA
1 ATTTTACACTACAAGAGTATTTCAATA
95030081 ATTT
1 ATTT
95030085 ATAAATCGGG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.40
Consensus pattern (27 bp):
ATTTTACACTACAAGAGTATTTCAATA
Found at i:95030116 original size:27 final size:27
Alignment explanation
Indices: 95030082--95030319 Score: 222
Period size: 27 Copynumber: 9.1 Consensus size: 27
95030072 ATTTCAATAA
* *
95030082 TTTATAAATCGGGGGTGTTTTGGTAAT
1 TTTATAAATCGAGGGTATTTTGGTAAT
*
95030109 TTTATAAATCGAGAGTATTTTGGTAAT
1 TTTATAAATCGAGGGTATTTTGGTAAT
* *
95030136 TTTACAAATCGAGGGTATTTCGGTAAT
1 TTTATAAATCGAGGGTATTTTGGTAAT
* *
95030163 TTTATAAATCGAGGGTGTTTTAGTAAT
1 TTTATAAATCGAGGGTATTTTGGTAAT
* *
95030190 TTTACAAATCG-GAGGTATTTTAGTAAT
1 TTTATAAATCGAG-GGTATTTTGGTAAT
* **
95030217 TTTATAAATTGAGGGTATTTCAGTAA-
1 TTTATAAATCGAGGGTATTTTGGTAAT
* *
95030243 -TT-T--A--GAGGGTATTTCGATAAT
1 TTTATAAATCGAGGGTATTTTGGTAAT
* * * *
95030264 TTTACAAATCGGGGGTATTTCGTTAAT
1 TTTATAAATCGAGGGTATTTTGGTAAT
* **
95030291 TTTACAAATCGAGGGTATTTAAGTAAT
1 TTTATAAATCGAGGGTATTTTGGTAAT
95030318 TT
1 TT
95030320 CTCTTTATTA
Statistics
Matches: 178, Mismatches: 24, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
20 14 0.08
22 3 0.02
24 1 0.01
25 3 0.02
26 1 0.01
27 155 0.87
28 1 0.01
ACGTcount: A:0.30, C:0.06, G:0.21, T:0.42
Consensus pattern (27 bp):
TTTATAAATCGAGGGTATTTTGGTAAT
Found at i:95030165 original size:54 final size:54
Alignment explanation
Indices: 95030070--95030319 Score: 250
Period size: 54 Copynumber: 4.8 Consensus size: 54
95030060 CACTACAAGA
* * * * * *
95030070 GTATTTCAATAA-TTTATAAATCGGGGGTGTTTTGGTAATTTTATAAATCGAGA
1 GTATTTCAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTATAAATCGAGG
**
95030123 GTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTATAAATCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTATAAATCGAGG
* * ** *
95030177 GTGTTTTAGTAATTTTACAAATCG-GAGGTATTTTAGTAATTTTATAAATTGAGG
1 GTATTTCAGTAATTTTACAAATCGAG-GGTATTTCGGTAATTTTATAAATCGAGG
* * *
95030231 GTATTTCAGTAA-TTT----A--GAGGGTATTTCGATAATTTTACAAATCGGGG
1 GTATTTCAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTATAAATCGAGG
**
95030278 GTATTTC-GTTAATTTTACAAATCGAGGGTATTTAAGTAATTT
1 GTATTTCAG-TAATTTTACAAATCGAGGGTATTTCGGTAATTT
95030320 CTCTTTATTA
Statistics
Matches: 162, Mismatches: 24, Indels: 21
0.78 0.12 0.10
Matches are distributed among these distances:
46 1 0.01
47 33 0.20
48 4 0.02
49 1 0.01
52 1 0.01
53 13 0.08
54 109 0.67
ACGTcount: A:0.31, C:0.06, G:0.21, T:0.42
Consensus pattern (54 bp):
GTATTTCAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTATAAATCGAGG
Found at i:95030199 original size:81 final size:80
Alignment explanation
Indices: 95030070--95030319 Score: 275
Period size: 81 Copynumber: 3.2 Consensus size: 80
95030060 CACTACAAGA
* * * *
95030070 GTATTTCAATAA-TTTATAAATCGGGGGTGTTTTGGTAATTTTATAAATCGAGAGTATTTTGGTA
1 GTATTTCAGTAATTTTATAAATCGAGGGTGTTTTAGTAATTTTACAAATCG-GAGTATTTTGGTA
95030134 ATTTTACAAATCGAGG
65 ATTTTACAAATCGAGG
* *
95030150 GTATTTCGGTAATTTTATAAATCGAGGGTGTTTTAGTAATTTTACAAATCGGAGGTATTTTAGTA
1 GTATTTCAGTAATTTTATAAATCGAGGGTGTTTTAGTAATTTTACAAATCGGA-GTATTTTGGTA
* *
95030215 ATTTTATAAATTGAGG
65 ATTTTACAAATCGAGG
* * * * *
95030231 GTATTTCAGTAA--TT-T--A--GAGGGT-ATTTCGATAATTTTACAAATCGGGGGTATTTCGTT
1 GTATTTCAGTAATTTTATAAATCGAGGGTGTTTTAG-TAATTTTACAAATC-GGAGTATTTTGGT
95030288 AATTTTACAAATCGAGG
64 AATTTTACAAATCGAGG
*
95030305 GTATTTAAGTAATTT
1 GTATTTCAGTAATTT
95030320 CTCTTTATTA
Statistics
Matches: 146, Mismatches: 18, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
73 4 0.03
74 53 0.36
75 2 0.01
76 2 0.01
78 1 0.01
79 2 0.01
80 12 0.08
81 70 0.48
ACGTcount: A:0.31, C:0.06, G:0.21, T:0.42
Consensus pattern (80 bp):
GTATTTCAGTAATTTTATAAATCGAGGGTGTTTTAGTAATTTTACAAATCGGAGTATTTTGGTAA
TTTTACAAATCGAGG
Found at i:95030680 original size:28 final size:28
Alignment explanation
Indices: 95030640--95030694 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
95030630 CTCTTTAGGC
* * *
95030640 CCAATCTCGTTCACGTGGCCCATCAGGG
1 CCAATCACATTCACATGGCCCATCAGGG
*
95030668 CCAATCACATTCATATGGCCCATCAGG
1 CCAATCACATTCACATGGCCCATCAGG
95030695 CAACTACTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.24, C:0.35, G:0.20, T:0.22
Consensus pattern (28 bp):
CCAATCACATTCACATGGCCCATCAGGG
Found at i:95034789 original size:93 final size:93
Alignment explanation
Indices: 95034678--95034848 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
95034668 GCCCCTAAGT
* * * *
95034678 GAACTCAGACTCATCTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
95034743 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
95034771 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
95034836 CGAGTTCGGATGC
66 CGAGTTCGGATGC
95034849 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:95034838 original size:46 final size:46
Alignment explanation
Indices: 95034673--95034842 Score: 168
Period size: 46 Copynumber: 3.7 Consensus size: 46
95034663 TACCCGCCCC
* * * * * *
95034673 TAAGTGAACTCAGACTCATCTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
* * *
95034719 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC--A-GAC-A-TTCGCATCCA
* *
95034767 TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
95034812 TAAGTGAACTCGGACTCAACTCAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
95034843 GGATGCTCAA
Statistics
Matches: 100, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 3 0.03
46 54 0.54
47 26 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
Done.