Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 291 of 322
Found at i:96715296 original size:13 final size:13
Alignment explanation
Indices: 96715278--96715303 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
96715268 TTGAACCCAT
96715278 ACCAAAACAATCA
1 ACCAAAACAATCA
96715291 ACCAAAACAATCA
1 ACCAAAACAATCA
96715304 TAAAACATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.31, G:0.00, T:0.08
Consensus pattern (13 bp):
ACCAAAACAATCA
Found at i:96723619 original size:20 final size:20
Alignment explanation
Indices: 96723596--96723650 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
96723586 TACACGAGCG
96723596 TGTCCTGAGCCGCACGGGCA
1 TGTCCTGAGCCGCACGGGCA
* *
96723616 TGTCCCGAGCCGCACGAGCA
1 TGTCCTGAGCCGCACGGGCA
*
96723636 TGT-GTGA-CCGCACGG
1 TGTCCTGAGCCGCACGG
96723651 TCTACCCACA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
18 7 0.23
19 2 0.07
20 21 0.70
ACGTcount: A:0.16, C:0.35, G:0.35, T:0.15
Consensus pattern (20 bp):
TGTCCTGAGCCGCACGGGCA
Found at i:96736306 original size:25 final size:25
Alignment explanation
Indices: 96736276--96736353 Score: 76
Period size: 25 Copynumber: 3.2 Consensus size: 25
96736266 TAGGATTTTA
96736276 TGTGATGAATGTGAGCATGCATATG
1 TGTGATGAATGTGAGCATGCATATG
* * *
96736301 TGTGAT-AA-G-GCCGAATGGC-CAT-
1 TGTGATGAATGTG-AGCAT-GCATATG
96736323 TGTGATGAATGTGAGCATGCATATG
1 TGTGATGAATGTGAGCATGCATATG
96736348 TGTGAT
1 TGTGAT
96736354 AAGGCCGAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 7 0.17
23 10 0.25
24 10 0.25
25 13 0.32
ACGTcount: A:0.27, C:0.10, G:0.32, T:0.31
Consensus pattern (25 bp):
TGTGATGAATGTGAGCATGCATATG
Found at i:96736329 original size:47 final size:47
Alignment explanation
Indices: 96736275--96736554 Score: 425
Period size: 47 Copynumber: 6.0 Consensus size: 47
96736265 TTAGGATTTT
*
96736275 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
* *
96736322 TTGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
* * *
96736369 ATGTGGTGAATGTGAACATGCATATATGTGATGAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
*
96736416 ATGTGATAAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
*
96736463 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
* * ** * * *
96736510 ATGTGGTGAATATGAAAATGCATATATGCGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGC
96736555 TAGTGTGAAA
Statistics
Matches: 213, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 213 1.00
ACGTcount: A:0.31, C:0.12, G:0.31, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:96736456 original size:141 final size:141
Alignment explanation
Indices: 96736275--96736537 Score: 481
Period size: 141 Copynumber: 1.9 Consensus size: 141
96736265 TTAGGATTTT
* * *
96736275 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCATTGTGATGAATGTGAGCA
1 ATGTGATAAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
* *
96736340 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATGTGAACATGCATATATGTGATGAGG
66 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAAAATGCATATATGTGATGAGG
96736405 CCGAATGGCCA
131 CCGAATGGCCA
96736416 ATGTGATAAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATAAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
96736481 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAAAATGCATATATG
66 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAAAATGCATATATG
96736538 CGGTAAAGCC
Statistics
Matches: 117, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
141 117 1.00
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (141 bp):
ATGTGATAAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
TGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAAAATGCATATATGTGATGAGG
CCGAATGGCCA
Found at i:96736518 original size:25 final size:25
Alignment explanation
Indices: 96736443--96736518 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
96736433 ATGCATATAT
96736443 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
96736468 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
96736490 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
96736515 GTGA
1 GTGA
96736519 ATATGAAAAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:96736767 original size:37 final size:37
Alignment explanation
Indices: 96736717--96736831 Score: 185
Period size: 37 Copynumber: 3.1 Consensus size: 37
96736707 GGAAATATAT
*
96736717 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
96736754 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
96736791 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTACG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
96736828 TCCG
1 TCCG
96736832 AGCTAAAGGT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:96748354 original size:47 final size:47
Alignment explanation
Indices: 96748296--96749303 Score: 1793
Period size: 47 Copynumber: 21.4 Consensus size: 47
96748286 CAGCCAAGAC
* *
96748296 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
96748343 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
*
96748390 AGTGTATATATATGTGATAAAGCCTAATGGCCAATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
96748439 AGTGTATATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
96748488 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
96748535 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
96748582 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
96748629 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
96748676 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
96748723 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
96748770 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
96748817 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
96748864 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
96748911 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
96748958 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
96749005 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
96749052 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
* * *
96749099 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
* *
96749146 AGTGTATATATGTGATAAGGCCT-ATGGCCGATGTGATGAATGTTAA
1 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
*
96749192 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
* ** * * * * *
96749239 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
* * *
96749286 AGTGCATAAAGGTGATAA
1 AGTGTATATATGTGATAA
96749304 GTCCCGAAGG
Statistics
Matches: 935, Mismatches: 23, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
46 44 0.05
47 797 0.85
49 94 0.10
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:96748404 original size:27 final size:27
Alignment explanation
Indices: 96748374--96748456 Score: 68
Period size: 27 Copynumber: 3.3 Consensus size: 27
96748364 CTAATGGCCG
96748374 ATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGATGAATGTGAAAGTGTATATAT
* *** ***
96748401 ATGTGAT-AAAGCCTAA-TGGCCA-A-
1 ATGTGATGAATGTGAAAGTGTATATAT
96748424 -TGTGATGAATGTGAAAGTGTATATAT
1 ATGTGATGAATGTGAAAGTGTATATAT
96748450 ATGTGAT
1 ATGTGAT
96748457 AAAGCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 10
0.61 0.23 0.16
Matches are distributed among these distances:
22 6 0.16
23 5 0.14
24 4 0.11
25 4 0.11
26 5 0.14
27 13 0.35
ACGTcount: A:0.36, C:0.05, G:0.25, T:0.34
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTATATAT
Found at i:96749492 original size:37 final size:37
Alignment explanation
Indices: 96749424--96749501 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
96749414 CGAGCTCTAC
* * *
96749424 AGACTCGATGACTACGTGTGGGAATTTTGTCCGGGTA
1 AGACCCGATAACTACGTGTGGGAATTATGTCCGGGTA
*
96749461 AGACCCGATAACTTCGTGT-GGAGATTATGTCCGGGTA
1 AGACCCGATAACTACGTGTGGGA-ATTATGTCCGGGTA
96749498 AGAC
1 AGAC
96749502 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
36 3 0.08
37 33 0.92
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (37 bp):
AGACCCGATAACTACGTGTGGGAATTATGTCCGGGTA
Found at i:96753360 original size:49 final size:49
Alignment explanation
Indices: 96753291--96753470 Score: 174
Period size: 49 Copynumber: 3.8 Consensus size: 49
96753281 TGACTAGCAC
*
96753291 ATCAAAGTCGATGCCATGTCCCAGACAGGTCTTACACTGAATTTCATAT
1 ATCAAAGTCGATGCCATGTCCCAGACAGGTCTTACACTGAATCTCATAT
* * * * * * *
96753340 ATCAAGGTCGATTCCGTGTCCTAGACAGGTCTTACATTGACTCTCATTT
1 ATCAAAGTCGATGCCATGTCCCAGACAGGTCTTACACTGAATCTCATAT
* * * * * *
96753389 ATCGATGTCGATGCCATGTCCCAGATAGGTCTTACATTG-A-CACACA-
1 ATCAAAGTCGATGCCATGTCCCAGACAGGTCTTACACTGAATCTCATAT
*
96753435 A-C-AAG-CTGACGCCATGTCCCAGACAGGTCTTACACT
1 ATCAAAGTC-GATGCCATGTCCCAGACAGGTCTTACACT
96753471 AGCTTGTATA
Statistics
Matches: 108, Mismatches: 22, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
43 1 0.01
44 28 0.26
45 1 0.01
46 1 0.01
47 3 0.03
49 74 0.69
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (49 bp):
ATCAAAGTCGATGCCATGTCCCAGACAGGTCTTACACTGAATCTCATAT
Found at i:96753556 original size:46 final size:46
Alignment explanation
Indices: 96753447--96753611 Score: 134
Period size: 46 Copynumber: 3.5 Consensus size: 46
96753437 AAGCTGACGC
* * * **
96753447 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCAAGGCTGATG
1 CATGACCCAGACATGTCTTACACTAGC-TCT-CGTCTCAAGGCTGATG
* * * *
96753495 CGTGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCTGGTG
1 CATGACCCAGACATGTCTTACACTAGCTCTCGTCTCAAGGCTGATG
* * * * * ** *
96753541 CATGACCCTGACATGTCTTACGCTGGCTCTCATAAT-GTGGCCGATG
1 CATGACCCAGACATGTCTTACACTAGCTCTCGT-CTCAAGGCTGATG
*
96753587 CATGTCCCAGACATGTCTTACACTA
1 CATGACCCAGACATGTCTTACACTA
96753612 CACACATATC
Statistics
Matches: 93, Mismatches: 23, Indels: 4
0.77 0.19 0.03
Matches are distributed among these distances:
46 65 0.70
47 3 0.03
48 25 0.27
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (46 bp):
CATGACCCAGACATGTCTTACACTAGCTCTCGTCTCAAGGCTGATG
Found at i:96761162 original size:48 final size:47
Alignment explanation
Indices: 96761096--96761262 Score: 162
Period size: 46 Copynumber: 3.6 Consensus size: 47
96761086 AAGCTGACAC
* *
96761096 CATGTCCCATACAGGTCTTACACTAGCTTGTATATCTCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-TATATCTCGAGGCTGATG
* * * * *
96761144 CATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCAATG-TCGTTG
1 CATGTCCCAGACATGTCTTACACTAGCTTTATATCTCGAGGCT-GATG
* * * * * *
96761190 CATGTACCAGACATGTCTTACACTGGCTCTCATA-AT-GTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TTATATCTCGAGGCTGATG
96761236 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
96761263 ACACATATCA
Statistics
Matches: 95, Mismatches: 20, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
45 1 0.01
46 65 0.68
47 2 0.02
48 27 0.28
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTTTATATCTCGAGGCTGATG
Found at i:96761200 original size:46 final size:44
Alignment explanation
Indices: 96761140--96761262 Score: 167
Period size: 46 Copynumber: 2.7 Consensus size: 44
96761130 TCTCGAGGCT
96761140 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGT-C
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCA--T-AATGTGC
* * *
96761186 GTTGCATGTACCAGACATGTCTTACACTGGCTCTCATAATGTGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATGT-G-C
96761232 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
96761263 ACACATATCA
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
43 5 0.07
44 1 0.01
46 62 0.91
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATGTGC
Found at i:96764848 original size:18 final size:19
Alignment explanation
Indices: 96764825--96764860 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
96764815 TTTTTAAAGG
*
96764825 TAATTT-TTTTTATAATTA
1 TAATTTATTTTTAAAATTA
96764843 TAATTTATTTTTAAAATT
1 TAATTTATTTTTAAAATT
96764861 TTTTTAATGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (19 bp):
TAATTTATTTTTAAAATTA
Found at i:96766009 original size:3 final size:3
Alignment explanation
Indices: 96765993--96766229 Score: 103
Period size: 3 Copynumber: 77.7 Consensus size: 3
96765983 CGTGAATATG
* * * *
96765993 TTA TTA TT- TATA TTA TTG TTA TTA TTA CTA TTA TTAA ATA TTC TTA
1 TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA
* * * * * * *
96766039 TTA TTA CTA TTA TTT TTG TTCC TT- TTA TTA TTGT TTA TTA TCA ATA
1 TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TT-A TTA TTA TTA TTA
96766085 -TA TTA TTA TTA TTA TTA TTA TTA CTT- TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA
* * * * *
96766129 CTTG TCA TTA TT- TTCA TCA CTA CTA TTA TT- TATA CCTTA TTA TTA
1 -TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA T-TA --TTA TTA TTA
* * ** * * *
96766174 TTA CATA TTA TT- TTA CTA TCG TTA TCTA ATA -TA TTA TCA TTA TCA
1 TTA -TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA
96766219 TTA TTA TTA TT
1 TTA TTA TTA TT
96766230 TTAGTATTGT
Statistics
Matches: 175, Mismatches: 39, Indels: 40
0.69 0.15 0.16
Matches are distributed among these distances:
2 14 0.08
3 142 0.81
4 16 0.09
5 2 0.01
6 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.02, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:96766279 original size:3 final size:3
Alignment explanation
Indices: 96766271--96766455 Score: 370
Period size: 3 Copynumber: 61.7 Consensus size: 3
96766261 TATTTTTATT
96766271 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
96766319 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
96766367 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
96766415 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
96766456 TGAATTAAGT
Statistics
Matches: 182, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 182 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:96766668 original size:40 final size:41
Alignment explanation
Indices: 96766594--96766670 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
96766584 GAATAACATA
* *
96766594 TAATAAATAATAAAAAATATAATTTAAAATTTAAAATTAAT
1 TAATAAATAATAAAAAATATAATTAAAAAATTAAAATTAAT
96766635 TAAT-AATAATATATAAAATAT-A-TAAAAAATTAAAAT
1 TAATAAATAATA-A-AAAATATAATTAAAAAATTAAAAT
96766671 AAAAAAATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
40 19 0.59
41 6 0.19
42 7 0.22
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (41 bp):
TAATAAATAATAAAAAATATAATTAAAAAATTAAAATTAAT
Found at i:96766677 original size:14 final size:14
Alignment explanation
Indices: 96766658--96766687 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
96766648 TAAAATATAT
96766658 AAAAAATTAAAATA
1 AAAAAATTAAAATA
*
96766672 AAAAAATTAAATTA
1 AAAAAATTAAAATA
96766686 AA
1 AA
96766688 TTATGAATAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (14 bp):
AAAAAATTAAAATA
Found at i:96766682 original size:54 final size:53
Alignment explanation
Indices: 96766580--96766696 Score: 121
Period size: 54 Copynumber: 2.2 Consensus size: 53
96766570 AAATATATGT
* ** *
96766580 TTAAGAATAACATATAATAAATAATAAAAAATATAATTTAAAATTTAAAATTAA
1 TTAAGAATAACATATAATAAATAATAAAAAATAAAATAAAAAAATT-AAATTAA
* *
96766634 TTAATAATAATATAT-A-AAATATATAAAAAATTAAAATAAAAAAATTAAATTAAA
1 TTAAGAATAACATATAATAAATA-ATAAAAAA-TAAAATAAAAAAATTAAATT-AA
*
96766688 TTATGAATA
1 TTAAGAATA
96766697 CATTAAAAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
52 5 0.10
53 14 0.27
54 33 0.63
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.33
Consensus pattern (53 bp):
TTAAGAATAACATATAATAAATAATAAAAAATAAAATAAAAAAATTAAATTAA
Found at i:96767115 original size:45 final size:46
Alignment explanation
Indices: 96767023--96767115 Score: 170
Period size: 46 Copynumber: 2.0 Consensus size: 46
96767013 TGTACTTGAT
*
96767023 AAACCTTCATATAGCATCAACATAAAATTATTGGTTAATTAATTAA
1 AAACCTTCATATAGCATCAAAATAAAATTATTGGTTAATTAATTAA
96767069 AAACCTTCATATAGCATCAAAATAAAA-TATTGGTTAATTAATTAA
1 AAACCTTCATATAGCATCAAAATAAAATTATTGGTTAATTAATTAA
96767114 AA
1 AA
96767116 TTGGTCTATA
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
45 20 0.43
46 26 0.57
ACGTcount: A:0.48, C:0.12, G:0.06, T:0.33
Consensus pattern (46 bp):
AAACCTTCATATAGCATCAAAATAAAATTATTGGTTAATTAATTAA
Found at i:96768665 original size:10 final size:10
Alignment explanation
Indices: 96768652--96768743 Score: 68
Period size: 10 Copynumber: 9.4 Consensus size: 10
96768642 ATAACTTTTC
96768652 AAAAATTAT-
1 AAAAATTATA
96768661 AAAAATTGA-A
1 AAAAATT-ATA
96768671 AAAAATTAT-
1 AAAAATTATA
*
96768680 AAAAATTACTG
1 AAAAATTA-TA
*
96768691 AAAAATAATA
1 AAAAATTATA
* *
96768701 GAAAATTATG
1 AAAAATTATA
96768711 AAAAATTATA
1 AAAAATTATA
*
96768721 TAAAAACTAT-
1 -AAAAATTATA
*
96768731 GAAAA-TATA
1 AAAAATTATA
96768740 AAAA
1 AAAA
96768744 TATTTTTTTA
Statistics
Matches: 66, Mismatches: 10, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
8 3 0.05
9 23 0.35
10 25 0.38
11 15 0.23
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.26
Consensus pattern (10 bp):
AAAAATTATA
Found at i:96768694 original size:19 final size:19
Alignment explanation
Indices: 96768652--96768744 Score: 93
Period size: 20 Copynumber: 4.8 Consensus size: 19
96768642 ATAACTTTTC
*
96768652 AAAAATTATAAAAATTGA-A
1 AAAAATTATAAAAATT-ATG
96768671 AAAAATTATAAAAATTACTG
1 AAAAATTATAAAAATTA-TG
*
96768691 AAAAATAATAGAAAATTATG
1 AAAAATTATA-AAAATTATG
*
96768711 AAAAATTATATAAAAACTATG
1 AAAAA-T-TATAAAAATTATG
96768732 -AAAA-TATAAAAAT
1 AAAAATTATAAAAAT
96768745 ATTTTTTTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
17 8 0.12
18 1 0.02
19 16 0.25
20 20 0.31
21 16 0.25
22 3 0.05
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.27
Consensus pattern (19 bp):
AAAAATTATAAAAATTATG
Found at i:96768726 original size:21 final size:20
Alignment explanation
Indices: 96768652--96768743 Score: 88
Period size: 21 Copynumber: 4.7 Consensus size: 20
96768642 ATAACTTTTC
96768652 AAAAAT-TATAAAAA-T-TG
1 AAAAATATATAAAAATTATG
*
96768669 AAAAAAATTATAAAAATTACTG
1 AAAAATA-TATAAAAATTA-TG
96768691 AAAAATA-ATAGAAAATTATG
1 AAAAATATATA-AAAATTATG
*
96768711 AAAAATTATATAAAAACTATG
1 AAAAA-TATATAAAAATTATG
96768732 -AAAATATA-AAAA
1 AAAAATATATAAAA
96768744 TATTTTTTTA
Statistics
Matches: 64, Mismatches: 3, Indels: 15
0.78 0.04 0.18
Matches are distributed among these distances:
17 5 0.08
18 4 0.06
19 12 0.19
20 15 0.23
21 17 0.27
22 11 0.17
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.26
Consensus pattern (20 bp):
AAAAATATATAAAAATTATG
Found at i:96769027 original size:27 final size:23
Alignment explanation
Indices: 96768997--96769047 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 23
96768987 TTAATTTTAA
96768997 TAATTTTATCTTATTTTTAATGAATTT
1 TAATTTT-T-TTATTTTT-AT-AATTT
96769024 TAATTTTTTTATTTTTATAATTT
1 TAATTTTTTTATTTTTATAATTT
96769047 T
1 T
96769048 TGAAAATTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
23 6 0.25
24 2 0.08
25 8 0.33
26 1 0.04
27 7 0.29
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (23 bp):
TAATTTTTTTATTTTTATAATTT
Found at i:96769080 original size:69 final size:68
Alignment explanation
Indices: 96768975--96769107 Score: 155
Period size: 69 Copynumber: 1.9 Consensus size: 68
96768965 GTTTTAAATT
* ** *
96768975 TTTTTGAAAATTTTAATTTTAATAATTTTATCTTATTTTTAATGAATT-TTAATTTTTT-TATTT
1 TTTTTGAAAATTCTAATTTTAATAATTAAATCTTATTTCT-AT--ATTATTAATTTTTTATATTT
96769038 TTATAA
63 TTATAA
* *
96769044 TTTTTGAAAATTCTAATTTTTAT-ATTGAAATTTTATTTCTATATTATTAATTTTTTATATTTTT
1 TTTTTGAAAATTCTAATTTTAATAATT-AAATCTTATTTCTATATTATTAATTTTTTATATTTTT
96769108 CATTTTTTAT
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
66 3 0.05
67 10 0.18
68 12 0.22
69 30 0.55
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (68 bp):
TTTTTGAAAATTCTAATTTTAATAATTAAATCTTATTTCTATATTATTAATTTTTTATATTTTTA
TAA
Found at i:96769104 original size:16 final size:16
Alignment explanation
Indices: 96769083--96769118 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
96769073 ATTTTATTTC
96769083 TATATTATTAATTTTT
1 TATATTATTAATTTTT
* *
96769099 TATATTTTTCATTTTT
1 TATATTATTAATTTTT
96769115 TATA
1 TATA
96769119 ATTTTAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (16 bp):
TATATTATTAATTTTT
Found at i:96769123 original size:16 final size:16
Alignment explanation
Indices: 96769093--96769123 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
96769083 TATATTATTA
*
96769093 ATTTTTTATATTTTTC
1 ATTTTTTATAATTTTC
96769109 ATTTTTTATAATTTT
1 ATTTTTTATAATTTT
96769124 AAAAATTCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (16 bp):
ATTTTTTATAATTTTC
Found at i:96770065 original size:3 final size:3
Alignment explanation
Indices: 96770057--96770082 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
96770047 AAGAAGCCAA
96770057 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
96770083 ACATCCGACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:96778068 original size:16 final size:17
Alignment explanation
Indices: 96778036--96778069 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
96778026 CGCAATATTC
96778036 CAAAACAATATTGTTTT
1 CAAAACAATATTGTTTT
*
96778053 CAAAACACTA-TGTTTT
1 CAAAACAATATTGTTTT
96778069 C
1 C
96778070 GTAACTTAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.38, C:0.18, G:0.06, T:0.38
Consensus pattern (17 bp):
CAAAACAATATTGTTTT
Found at i:96782803 original size:24 final size:24
Alignment explanation
Indices: 96782775--96782826 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
96782765 AGAGGTACTT
* *
96782775 AGTTGGTAATTATACCATTTTTTA
1 AGTTGGTAACTATACCATTTATTA
*
96782799 AGTTGGTAACTATAGCATTTATTA
1 AGTTGGTAACTATACCATTTATTA
96782823 AGTT
1 AGTT
96782827 AGTGGACAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (24 bp):
AGTTGGTAACTATACCATTTATTA
Found at i:96783622 original size:19 final size:19
Alignment explanation
Indices: 96783571--96783623 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 19
96783561 ATGCATTATT
*
96783571 ATTTATGCTTT-AATTGTG
1 ATTTATTCTTTGAATTGTG
* * *
96783589 TTATTATTGTATGAATTGTG
1 AT-TTATTCTTTGAATTGTG
96783609 ATTTATTCTTTGAAT
1 ATTTATTCTTTGAAT
96783624 GAATTCGACA
Statistics
Matches: 26, Mismatches: 7, Indels: 3
0.72 0.19 0.08
Matches are distributed among these distances:
18 1 0.04
19 17 0.65
20 8 0.31
ACGTcount: A:0.25, C:0.04, G:0.15, T:0.57
Consensus pattern (19 bp):
ATTTATTCTTTGAATTGTG
Found at i:96783755 original size:42 final size:42
Alignment explanation
Indices: 96783708--96783830 Score: 156
Period size: 43 Copynumber: 2.9 Consensus size: 42
96783698 ATTAGGATTA
*
96783708 ATGAGAATACGTGTAAGACCATATCTGGGATATGGCATCGAT
1 ATGAGAATACGTGTAAGACCATATCTGGGATATGGCATCAAT
* * * * *
96783750 ATGAGACTTCGTGTAAGACCATACCTGGGCTATTGGCACCAAT
1 ATGAGAATACGTGTAAGACCATATCTGGGATA-TGGCATCAAT
* * *
96783793 ACGAGATTACATGTAAGACCATATCTGGGATATGGCAT
1 ATGAGAATACGTGTAAGACCATATCTGGGATATGGCAT
96783831 TGGTATGGTA
Statistics
Matches: 67, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
42 33 0.49
43 34 0.51
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (42 bp):
ATGAGAATACGTGTAAGACCATATCTGGGATATGGCATCAAT
Found at i:96792256 original size:60 final size:60
Alignment explanation
Indices: 96792161--96792284 Score: 169
Period size: 60 Copynumber: 2.1 Consensus size: 60
96792151 CTTGGTCATC
* * * *
96792161 TATCACCCCACGAACATGAGGATTAGCACCCTGACCATTCAAATTATCATTCATACCAGG
1 TATCACCCCACAAACAGGAGGATTAGCACACTGACCATTCAAATTATCATTCAAACCAGG
* * * *
96792221 TATCACCCTACAAACAGGAGGATTAGCATATTGACCATTCAAATTATCATTGAAACCAGG
1 TATCACCCCACAAACAGGAGGATTAGCACACTGACCATTCAAATTATCATTCAAACCAGG
96792281 -ATCA
1 TATCA
96792285 TTCCCATTCC
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
59 4 0.07
60 52 0.93
ACGTcount: A:0.36, C:0.26, G:0.14, T:0.24
Consensus pattern (60 bp):
TATCACCCCACAAACAGGAGGATTAGCACACTGACCATTCAAATTATCATTCAAACCAGG
Found at i:96793527 original size:23 final size:24
Alignment explanation
Indices: 96793496--96793542 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
96793486 ATTGCACAAA
96793496 CCAACTTTTTAA-CTCTAAAAACAC
1 CCAACTTTTTAACCTC-AAAAACAC
96793520 CCAA-TTTTTAACCTCAAAAACAC
1 CCAACTTTTTAACCTCAAAAACAC
96793543 TACTTTTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 15 0.68
24 7 0.32
ACGTcount: A:0.43, C:0.30, G:0.00, T:0.28
Consensus pattern (24 bp):
CCAACTTTTTAACCTCAAAAACAC
Found at i:96795695 original size:49 final size:47
Alignment explanation
Indices: 96795580--96795756 Score: 160
Period size: 49 Copynumber: 3.7 Consensus size: 47
96795570 CGAGATGTGT
* * **
96795580 CAGTGTAAGACTATGTCAGGGACATGGCATCGGCACAGATATGTGA-GAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTCA-ATG-GATGAGC
* * * *
96795630 TAGTGTAAGACCATGTCTGGGACATGGCGTCGACCTCAATTTTGAT-AGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGA-CTCAA--TGGATGAGC
* * ** *
96795679 CAGTGTAAGAACATGTCTAGGAGTTGGCATCGACTTAATGGATGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACTCAATGGATGAGC
96795726 CAGTGTAAGACCATGTCTGGGACATGGCATC
1 CAGTGTAAGACCATGTCTGGGACATGGCATC
96795757 AGCATTATAC
Statistics
Matches: 101, Mismatches: 21, Indels: 13
0.75 0.16 0.10
Matches are distributed among these distances:
46 4 0.04
47 29 0.29
48 6 0.06
49 34 0.34
50 28 0.28
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (47 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGACTCAATGGATGAGC
Found at i:96807980 original size:80 final size:80
Alignment explanation
Indices: 96807843--96808001 Score: 282
Period size: 80 Copynumber: 2.0 Consensus size: 80
96807833 AATTTCTTAA
96807843 TGAAATTTTAATATAACCCTAACATATTCTCGTAGACATTAAATAAATAATAGAATAATAATTCA
1 TGAAATTTTAATATAACCCTAACATATTCTCGTAGACATTAAATAAATAATAGAATAATAATTCA
*
96807908 ATCTTCGAAATTGTG
66 ATCATCGAAATTGTG
* * *
96807923 TGAAATTTTAATATAACCCTAATATATTCTTGTAGACATTAAATAAATAATATAATAATAATTCA
1 TGAAATTTTAATATAACCCTAACATATTCTCGTAGACATTAAATAAATAATAGAATAATAATTCA
96807988 ATCATCGAAATTGT
66 ATCATCGAAATTGT
96808002 AGTCCTAAAA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 75 1.00
ACGTcount: A:0.45, C:0.11, G:0.08, T:0.36
Consensus pattern (80 bp):
TGAAATTTTAATATAACCCTAACATATTCTCGTAGACATTAAATAAATAATAGAATAATAATTCA
ATCATCGAAATTGTG
Found at i:96809053 original size:18 final size:17
Alignment explanation
Indices: 96809020--96809054 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
96809010 GTTTGGATCC
*
96809020 AAATTAATAATTTAATT
1 AAATTAATAATCTAATT
96809037 AAATTAACTAATCTAATT
1 AAATTAA-TAATCTAATT
96809055 TAACCTAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (17 bp):
AAATTAATAATCTAATT
Found at i:96812222 original size:40 final size:41
Alignment explanation
Indices: 96812167--96812282 Score: 144
Period size: 41 Copynumber: 2.8 Consensus size: 41
96812157 GCAAAAATTG
* *
96812167 TAAAATACATAGCAATAGCGGCGTTTTA-CCAAAAACGCCAC
1 TAAAA-ACAGAGCAATAGCGGCGTTTTAGCAAAAAACGCCAC
* *
96812208 TAAAAACAGAGCAATAGCGGCGTTTTAGTAAAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCGTTTTAGCAAAAAACGCCAC
* * *
96812249 GAAAAACAGAGCATTAGCGGCGCTTTTGGCAAAA
1 TAAAAACAGAGCAATAGCGGCG-TTTTAGCAAAA
96812283 CGCCGTTAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
40 21 0.32
41 35 0.54
42 9 0.14
ACGTcount: A:0.41, C:0.21, G:0.21, T:0.18
Consensus pattern (41 bp):
TAAAAACAGAGCAATAGCGGCGTTTTAGCAAAAAACGCCAC
Found at i:96812482 original size:21 final size:21
Alignment explanation
Indices: 96812458--96812537 Score: 78
Period size: 21 Copynumber: 3.9 Consensus size: 21
96812448 CATTATAGTT
*
96812458 TATGGTTTATGGTTTAAGATA
1 TATGGTTTAGGGTTTAAGATA
96812479 TATGGTTTAGGGTTTAA-AT-
1 TATGGTTTAGGGTTTAAGATA
* *
96812498 GA--GTTAACTATGGTTTAAGATA
1 TATGGTT---TAGGGTTTAAGATA
96812520 TATGGTTTAGGGTTTAAG
1 TATGGTTTAGGGTTTAAG
96812538 GTTTAGGAGT
Statistics
Matches: 47, Mismatches: 5, Indels: 14
0.71 0.08 0.21
Matches are distributed among these distances:
17 3 0.06
19 1 0.02
20 11 0.23
21 28 0.60
22 1 0.02
24 3 0.06
ACGTcount: A:0.29, C:0.01, G:0.26, T:0.44
Consensus pattern (21 bp):
TATGGTTTAGGGTTTAAGATA
Found at i:96812609 original size:7 final size:7
Alignment explanation
Indices: 96812580--96812678 Score: 58
Period size: 7 Copynumber: 14.1 Consensus size: 7
96812570 GATGAATTAT
96812580 GGGTTTA
1 GGGTTTA
*
96812587 GGGATTA
1 GGGTTTA
* *
96812594 TGTTTTA
1 GGGTTTA
96812601 GGGTTTA
1 GGGTTTA
**
96812608 GGGGCTA
1 GGGTTTA
96812615 GGG-TT-
1 GGGTTTA
96812620 GGAGTTTA
1 GG-GTTTA
* *
96812628 AGGTGTAA
1 GGGT-TTA
*
96812636 GGGTTTG
1 GGGTTTA
*
96812643 GGGTTGA
1 GGGTTTA
96812650 GGGTTTA
1 GGGTTTA
*
96812657 GAGTTTA
1 GGGTTTA
*
96812664 GAGTTTA
1 GGGTTTA
*
96812671 GAGTTTA
1 GGGTTTA
96812678 G
1 G
96812679 AAAAATAATA
Statistics
Matches: 70, Mismatches: 18, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
5 2 0.03
6 2 0.03
7 60 0.86
8 6 0.09
ACGTcount: A:0.19, C:0.01, G:0.41, T:0.38
Consensus pattern (7 bp):
GGGTTTA
Found at i:96818401 original size:40 final size:40
Alignment explanation
Indices: 96818350--96818530 Score: 290
Period size: 40 Copynumber: 4.5 Consensus size: 40
96818340 CTACTCGCTT
* * *
96818350 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACA
* *
96818390 AATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACA
* *
96818430 AATGCCTTCGGGACTTAGCCCGGATGTAATAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACA
*
96818470 AATGCCTTCGGGACTTAGCCCGGATGTAATAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACA
96818510 AATGCCTTCGGGACTTAGCCC
1 AATGCCTTCGGGACTTAGCCC
96818531 AGTTATCATC
Statistics
Matches: 133, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 133 1.00
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACA
Found at i:96821272 original size:7 final size:7
Alignment explanation
Indices: 96821260--96821295 Score: 63
Period size: 7 Copynumber: 5.1 Consensus size: 7
96821250 CATTCTCTTA
96821260 ATCCCTC
1 ATCCCTC
96821267 ATCCCTC
1 ATCCCTC
96821274 ATCCCTC
1 ATCCCTC
*
96821281 ACCCCTC
1 ATCCCTC
96821288 ATCCCTC
1 ATCCCTC
96821295 A
1 A
96821296 CATCTCATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.17, C:0.58, G:0.00, T:0.25
Consensus pattern (7 bp):
ATCCCTC
Found at i:96821302 original size:14 final size:14
Alignment explanation
Indices: 96821260--96821303 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
96821250 CATTCTCTTA
96821260 ATCCCTCATC-CCTC
1 ATCCCTCA-CACCTC
*
96821274 ATCCCTCACCCCTC
1 ATCCCTCACACCTC
*
96821288 ATCCCTCACATCTC
1 ATCCCTCACACCTC
96821302 AT
1 AT
96821304 TTCTCTTTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
13 1 0.04
14 26 0.96
ACGTcount: A:0.18, C:0.55, G:0.00, T:0.27
Consensus pattern (14 bp):
ATCCCTCACACCTC
Found at i:96833833 original size:41 final size:40
Alignment explanation
Indices: 96833706--96833850 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
96833696 CTCGCACAAG
* * * * *
96833706 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
96833746 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
96833786 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
96833827 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
96833851 CATTCAAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:96835781 original size:117 final size:114
Alignment explanation
Indices: 96835559--96835789 Score: 426
Period size: 117 Copynumber: 2.0 Consensus size: 114
96835549 CCAACAAAAA
*
96835559 GGGTAGTCCTATACATGCCATTTCGAAGTTCAACCAAAATTGTACCAAAAGGGGGGGCTTTGATA
1 GGGTAGTCCTATACATGCCATTTCGAAATTCAACCAAAATTGTACCAAAAGGGGGGGCTTTGATA
96835624 GTGTGGGCGACTTCGACTTCAAAATCCCGAGTCCGATAGCTGAAGAACC
66 GTGTGGGCGACTTCGACTTCAAAATCCCGAGTCCGATAGCTGAAGAACC
96835673 GGGTAGTCCTATACATGCCATTTCGAAATTCAACCAAAATTGTACCAAAAGGGGGGGGGGCTTTG
1 GGGTAGTCCTATACATGCCATTTCGAAATTCAACCAAAATTGTACCAAAA---GGGGGGGCTTTG
96835738 ATAGTGTGGGCGACTTCGACTTCAAAATCCCGAGTCCGATAGCTGAAGAACC
63 ATAGTGTGGGCGACTTCGACTTCAAAATCCCGAGTCCGATAGCTGAAGAACC
96835790 AAAATCTATA
Statistics
Matches: 113, Mismatches: 1, Indels: 3
0.97 0.01 0.03
Matches are distributed among these distances:
114 49 0.43
117 64 0.57
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (114 bp):
GGGTAGTCCTATACATGCCATTTCGAAATTCAACCAAAATTGTACCAAAAGGGGGGGCTTTGATA
GTGTGGGCGACTTCGACTTCAAAATCCCGAGTCCGATAGCTGAAGAACC
Found at i:96836154 original size:138 final size:138
Alignment explanation
Indices: 96835938--96836213 Score: 543
Period size: 138 Copynumber: 2.0 Consensus size: 138
96835928 ATCATACTTA
96835938 CTTCACATTACCAACCCTTTTATTCATACACAAAGATCAACTTAGCCAAAGGCCGGTAGCTCATT
1 CTTCACATTACCAACCCTTTTATTCATACACAAAGATCAACTTAGCCAAAGGCCGGTAGCTCATT
96836003 TATCAACTAAGCGAATACTTATTTGTAAGGGCTCAACTAATTCAAAGCACATACGAAACATACCT
66 TATCAACTAAGCGAATACTTATTTGTAAGGGCTCAACTAATTCAAAGCACATACGAAACATACCT
96836068 CAATGTTG
131 CAATGTTG
96836076 CTTCACATTACCAACCCTTTTATTCATACACAAAGATCAACTTAGCCAAAGGCCGGTAGCTCATT
1 CTTCACATTACCAACCCTTTTATTCATACACAAAGATCAACTTAGCCAAAGGCCGGTAGCTCATT
*
96836141 TATCAACTGAGCGAATACTTATTTGTAAGGGCTCAACTAATTCAAAGCACATACGAAACATACCT
66 TATCAACTAAGCGAATACTTATTTGTAAGGGCTCAACTAATTCAAAGCACATACGAAACATACCT
96836206 CAATGTTG
131 CAATGTTG
96836214 GGATGTTTCA
Statistics
Matches: 137, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
138 137 1.00
ACGTcount: A:0.35, C:0.25, G:0.13, T:0.28
Consensus pattern (138 bp):
CTTCACATTACCAACCCTTTTATTCATACACAAAGATCAACTTAGCCAAAGGCCGGTAGCTCATT
TATCAACTAAGCGAATACTTATTTGTAAGGGCTCAACTAATTCAAAGCACATACGAAACATACCT
CAATGTTG
Found at i:96836353 original size:40 final size:40
Alignment explanation
Indices: 96836309--96836696 Score: 464
Period size: 40 Copynumber: 9.7 Consensus size: 40
96836299 GCTACTCGTT
* *
96836309 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * *
96836349 CAAATGCCTTCGGGACTTAACCCGGATTTATTAACTCTCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
96836389 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
96836429 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * **
96836469 CAAATGCTACCTTCGGAATTTA-ACCGGATATAGCT-ACTCGTT
1 CAAATG---CCTTCGGGACTTAGCCCGGATTTAG-TAACTCGCA
*
96836511 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
96836551 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* ** *
96836591 AAAATGCCTTCGGGACTTAAACTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
96836631 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
96836671 CAAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
96836697 CATCATTCAA
Statistics
Matches: 303, Mismatches: 32, Indels: 26
0.84 0.09 0.07
Matches are distributed among these distances:
39 18 0.06
40 246 0.81
41 7 0.02
42 21 0.07
43 9 0.03
44 2 0.01
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:96836621 original size:202 final size:202
Alignment explanation
Indices: 96836275--96836677 Score: 752
Period size: 202 Copynumber: 2.0 Consensus size: 202
96836265 CAAATCACAG
96836275 ACCTTCGGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAG
1 ACCTTCGGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAG
* * *
96836340 TAACTCACACAAATGCCTTCGGGACTTAACCCGGATTTATTAACTCTCACAAATGCCTTCGGGAC
66 TAACTCACACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAAAAATGCCTTCGGGAC
*
96836405 TTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGTAC
131 TTAAACCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGTAC
96836470 AAATGCT
196 AAATGCT
96836477 ACCTTCGGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAG
1 ACCTTCGGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAG
*
96836542 TAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAAAAATGCCTTCGGGAC
66 TAACTCACACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAAAAATGCCTTCGGGAC
*
96836607 TTAAACTGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGTAC
131 TTAAACCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGTAC
96836672 AAATGC
196 AAATGC
96836678 CTTCGGGACT
Statistics
Matches: 195, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
202 195 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (202 bp):
ACCTTCGGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAG
TAACTCACACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAAAAATGCCTTCGGGAC
TTAAACCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGTAC
AAATGCT
Found at i:96836914 original size:124 final size:124
Alignment explanation
Indices: 96836694--96836940 Score: 485
Period size: 124 Copynumber: 2.0 Consensus size: 124
96836684 GACTTAGCCC
96836694 GGACATCATTCAAATAACCATGCACATTTAACAATAAATCATGGCACATTCGTATTTCATTTTCG
1 GGACATCATTCAAATAACCATGCACATTTAACAATAAATCATGGCACATTCGTATTTCATTTTCG
96836759 TTAGCAAAACTCAAACACAAGACACTTATCATTCTTGCAATTTCGGCTCAATAGCCACT
66 TTAGCAAAACTCAAACACAAGACACTTATCATTCTTGCAATTTCGGCTCAATAGCCACT
*
96836818 GGACATCATTCAAATAACCATGCACATTTAACAATAAATCATGGCACATTCGTATTTCGTTTTCG
1 GGACATCATTCAAATAACCATGCACATTTAACAATAAATCATGGCACATTCGTATTTCATTTTCG
96836883 TTAGCAAAACTCAAACACAAGACACTTATCATTCTTGCAATTTCGGCTCAATAGCCAC
66 TTAGCAAAACTCAAACACAAGACACTTATCATTCTTGCAATTTCGGCTCAATAGCCAC
96836941 ACTCAAAGAG
Statistics
Matches: 122, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
124 122 1.00
ACGTcount: A:0.35, C:0.24, G:0.11, T:0.30
Consensus pattern (124 bp):
GGACATCATTCAAATAACCATGCACATTTAACAATAAATCATGGCACATTCGTATTTCATTTTCG
TTAGCAAAACTCAAACACAAGACACTTATCATTCTTGCAATTTCGGCTCAATAGCCACT
Found at i:96837341 original size:193 final size:194
Alignment explanation
Indices: 96837011--96837396 Score: 720
Period size: 193 Copynumber: 2.0 Consensus size: 194
96837001 TCTTTTACTT
*
96837011 AAGAACTTACCTCGGATGTTGTCGAACGATTCCGATAGCTATTCGACCACTTTTTTTCTTCCCTT
1 AAGAACTTACCTCGGATGTTGTCGAACGATTCCGATAGCTATTCGAACACTTTTTTTCTTCCCTT
96837076 TATCGGATTTAGTTCCCCTTTGCTCTTGAGCTTAATTAAACAAATAAATTGATTTAATCATTTAA
66 TATCGGATTTAGTTCCCCTTTGCTCTTGAGCTTAATTAAACAAATAAATTGATTTAATCATTTAA
96837141 GCATCGAAAAGAGGAACACAAGGCACTTAGCCCATATTTATACATTAGACATTAAAGTCACATC
131 GCATCGAAAAGAGGAACACAAGGCACTTAGCCCATATTTATACATTAGACATTAAAGTCACATC
*
96837205 AAGAACTTACCTCGGATGTTGTCGAACGATTCCGATAGCTATTCGAACA-TTTTTTTCTTCCTTT
1 AAGAACTTACCTCGGATGTTGTCGAACGATTCCGATAGCTATTCGAACACTTTTTTTCTTCCCTT
* * *
96837269 TATCGGATTTAGTTCCCCTTTGCTCTTGAGCTTAATTAAACAAATAGATTGATTTAATTATTTGA
66 TATCGGATTTAGTTCCCCTTTGCTCTTGAGCTTAATTAAACAAATAAATTGATTTAATCATTTAA
96837334 GCATCGAAAAGAGGAACACAAGGCACTTAGCCCATATTTATACATTAGACATTAAAGTCACAT
131 GCATCGAAAAGAGGAACACAAGGCACTTAGCCCATATTTATACATTAGACATTAAAGTCACAT
96837397 ATGTACGGAA
Statistics
Matches: 187, Mismatches: 5, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
193 139 0.74
194 48 0.26
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (194 bp):
AAGAACTTACCTCGGATGTTGTCGAACGATTCCGATAGCTATTCGAACACTTTTTTTCTTCCCTT
TATCGGATTTAGTTCCCCTTTGCTCTTGAGCTTAATTAAACAAATAAATTGATTTAATCATTTAA
GCATCGAAAAGAGGAACACAAGGCACTTAGCCCATATTTATACATTAGACATTAAAGTCACATC
Found at i:96847396 original size:80 final size:79
Alignment explanation
Indices: 96847312--96847483 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
96847302 GGACTAAGAT
*
96847312 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
96847376 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
96847392 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
96847457 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
96847471 CCGAAGGCATTTG
1 CCGAAGGCATTTG
96847484 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:96847463 original size:39 final size:39
Alignment explanation
Indices: 96847312--96847481 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 39
96847302 GGACTAAGAT
*
96847312 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
1 CCGAAGGCA-TTGTGCGAGATACTAAA-TCCGGGTTAAGTC
*
96847352 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGATACTAAATCCGGGTTAAGTC
* * *
96847392 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATT-GTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
96847432 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGATACTAAATCCGGGTTAAGTC
96847471 CCGAAGGCATT
1 CCGAAGGCATT
96847482 TGAACGAGGA
Statistics
Matches: 117, Mismatches: 10, Indels: 7
0.87 0.07 0.05
Matches are distributed among these distances:
39 38 0.32
40 75 0.64
41 4 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:96847501 original size:79 final size:80
Alignment explanation
Indices: 96847339--96847516 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
96847329 AGATACAAAT
* * * *
96847339 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
96847404 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
96847419 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
96847483 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
96847498 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
96847517 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:96849010 original size:38 final size:38
Alignment explanation
Indices: 96848968--96849043 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
96848958 CAAGAACTCC
*
96848968 TTCCTCCTTCCTTAGAATTTTCAGCCAAAAGAAATGAA
1 TTCCTCATTCCTTAGAATTTTCAGCCAAAAGAAATGAA
*
96849006 TTCCTCATTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCATTCCTTAGAATTTTCAGCCAAAAGAAATGAA
96849044 AAAGGATGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.32
Consensus pattern (38 bp):
TTCCTCATTCCTTAGAATTTTCAGCCAAAAGAAATGAA
Found at i:96850300 original size:43 final size:43
Alignment explanation
Indices: 96850239--96850349 Score: 154
Period size: 43 Copynumber: 2.6 Consensus size: 43
96850229 ACAATGTCAA
*
96850239 TGTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCC-AC
1 TGTCCCAGACATGGTCTTACAAGTAATCAAATAT-GATGCCGAC
* * *
96850282 TGTCCCAGACAAGGTCTTACACGAAATCAAATATGATGCCGAC
1 TGTCCCAGACATGGTCTTACAAGTAATCAAATATGATGCCGAC
*
96850325 -GTACCAGACATGGTCTTACAAGTAA
1 TGTCCCAGACATGGTCTTACAAGTAA
96850350 ATCTCAAATC
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
42 27 0.45
43 33 0.55
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.24
Consensus pattern (43 bp):
TGTCCCAGACATGGTCTTACAAGTAATCAAATATGATGCCGAC
Found at i:96850333 original size:42 final size:43
Alignment explanation
Indices: 96850243--96850401 Score: 146
Period size: 43 Copynumber: 3.7 Consensus size: 43
96850233 TGTCAATGTC
* * *
96850243 CCAGACATGGTCTTACATGTAATCAAATATCGATGCCACTGTC
1 CCAGACATGGTCTTACACGAAATCAAATATCGATGCCACTGTA
*
96850286 CCAGACAAGGTCTTACACGAAATCAAATAT-GATGCCGAC-GTA
1 CCAGACATGGTCTTACACGAAATCAAATATCGATGCC-ACTGTA
* * * * *
96850328 CCAGACATGGTCTTACAAGTAAATCTCAA-ATCGATGTCAAC-ATC
1 CCAGACATGGTCTTACACG-AAATC-AAATATCGATG-CCACTGTA
** *
96850372 CCAGATGTGGTCTTACACGAAATCACATAT
1 CCAGACATGGTCTTACACGAAATCAAATAT
96850402 GAAATCCTAT
Statistics
Matches: 95, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
42 26 0.27
43 43 0.45
44 25 0.26
45 1 0.01
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.25
Consensus pattern (43 bp):
CCAGACATGGTCTTACACGAAATCAAATATCGATGCCACTGTA
Found at i:96850387 original size:86 final size:85
Alignment explanation
Indices: 96850243--96850403 Score: 209
Period size: 86 Copynumber: 1.9 Consensus size: 85
96850233 TGTCAATGTC
* * *
96850243 CCAGACATGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAAGGTCTTACACGAAA
1 CCAGACATGGTCTTACAAGTAATCAAATATCGATGCAACTATCCCAGACAAGGTCTTACACGAAA
96850308 TCAAATATGATGCCGACGTA
66 TCAAATATGATGCCGACGTA
* ***
96850328 CCAGACATGGTCTTACAAGTAAATCTCAA-ATCGATGTCAAC-ATCCCAGATGTGGTCTTACACG
1 CCAGACATGGTCTTACAAGT-AATC-AAATATCGATG-CAACTATCCCAGACAAGGTCTTACACG
*
96850391 AAATCACATATGA
63 AAATCAAATATGA
96850404 AATCCTATGT
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
85 19 0.29
86 41 0.63
87 5 0.08
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (85 bp):
CCAGACATGGTCTTACAAGTAATCAAATATCGATGCAACTATCCCAGACAAGGTCTTACACGAAA
TCAAATATGATGCCGACGTA
Found at i:96851128 original size:11 final size:11
Alignment explanation
Indices: 96851107--96851135 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
96851097 TCAAAAACGT
96851107 AAAAATC-ATC
1 AAAAATCAATC
96851117 AAAAATCAATC
1 AAAAATCAATC
96851128 AAAAATCA
1 AAAAATCA
96851136 TACCTCAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.39
11 11 0.61
ACGTcount: A:0.66, C:0.17, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAAATCAATC
Found at i:96855401 original size:48 final size:47
Alignment explanation
Indices: 96855346--96855503 Score: 156
Period size: 48 Copynumber: 3.3 Consensus size: 47
96855336 CAACCGATTT
96855346 CGCACACATAGTGCTAATCAAATTCGCACACATAGTGCCATTCTAAAC
1 CGCACACATAGTGCTAATCAAATTCGCACACATAGTGCCATTC-AAAC
* * * * ** * *
96855394 CGCACACATAGTGCT-TTGGAAATTCACTCATTTATTGACATTCAAAC
1 CGCACACATAGTGCTAAT-CAAATTCGCACACATAGTGCCATTCAAAC
* * * *
96855441 CAGCATACATAGTGCCAATCGATTTCGCACACATAGTGCCATTCAAATC
1 C-GCACACATAGTGCTAATCAAATTCGCACACATAGTGCCATTCAAA-C
*
96855490 CGCACACTTAGTGC
1 CGCACACATAGTGC
96855504 CATTGTTGGC
Statistics
Matches: 84, Mismatches: 22, Indels: 8
0.74 0.19 0.07
Matches are distributed among these distances:
47 6 0.07
48 75 0.89
49 3 0.04
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (47 bp):
CGCACACATAGTGCTAATCAAATTCGCACACATAGTGCCATTCAAAC
Found at i:96855506 original size:24 final size:24
Alignment explanation
Indices: 96855346--96855507 Score: 114
Period size: 24 Copynumber: 6.8 Consensus size: 24
96855336 CAACCGATTT
* * *
96855346 CGCACACATAGTGCTAATCAAATT
1 CGCACACATAGTGCCATTCAAATC
96855370 CGCACACATAGTGCCATTCTAAA-C
1 CGCACACATAGTGCCATTC-AAATC
* * *
96855394 CGCACACATAGTG-CTTTGGAAATT
1 CGCACACATAGTGCCATT-CAAATC
* * ** * *
96855418 CACTCATTTATTGACATTCAAA-C
1 CGCACACATAGTGCCATTCAAATC
* * * * *
96855441 CAGCATACATAGTGCCAATCGATTT
1 C-GCACACATAGTGCCATTCAAATC
96855466 CGCACACATAGTGCCATTCAAATC
1 CGCACACATAGTGCCATTCAAATC
*
96855490 CGCACACTTAGTGCCATT
1 CGCACACATAGTGCCATT
96855508 GTTGGCTCAT
Statistics
Matches: 101, Mismatches: 31, Indels: 12
0.70 0.22 0.08
Matches are distributed among these distances:
23 7 0.07
24 87 0.86
25 7 0.07
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.27
Consensus pattern (24 bp):
CGCACACATAGTGCCATTCAAATC
Found at i:96862824 original size:24 final size:26
Alignment explanation
Indices: 96862793--96862857 Score: 84
Period size: 24 Copynumber: 2.7 Consensus size: 26
96862783 CTCAACCGAT
96862793 TTCGCACACATAGTGCTAAT-C-AAA
1 TTCGCACACATAGTGCTAATGCTAAA
*
96862817 TTCGCACACATAGTGC-CATGCTAAA
1 TTCGCACACATAGTGCTAATGCTAAA
*
96862842 -CCGCACACATAGTGCT
1 TTCGCACACATAGTGCT
96862858 TTGGAAATTC
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
23 2 0.06
24 31 0.86
25 3 0.08
ACGTcount: A:0.32, C:0.29, G:0.15, T:0.23
Consensus pattern (26 bp):
TTCGCACACATAGTGCTAATGCTAAA
Found at i:96864387 original size:39 final size:40
Alignment explanation
Indices: 96864316--96864460 Score: 172
Period size: 40 Copynumber: 3.6 Consensus size: 40
96864306 GCTACTCATT
* *
96864316 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
96864356 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
96864395 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
96864436 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
96864461 CATCATTCAA
Statistics
Matches: 90, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
38 3 0.03
39 31 0.34
40 44 0.49
41 12 0.13
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:96877764 original size:49 final size:49
Alignment explanation
Indices: 96877707--96877932 Score: 281
Period size: 50 Copynumber: 4.6 Consensus size: 49
96877697 TTGGTACGCA
* * * *
96877707 TAGTAGCTTGCACTTAGTACTACACATGCGACCAATTATCCAGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* * ** *
96877756 TAGTAGCTTGCACTTAGTACTACACACGTGACCTAACCATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCGGTACACG
* * * * * * *
96877806 TAGTAGCCTGCACATAGTACTACACACGTGATCGAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAATTATCCGGTACACG
*
96877856 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
96877905 TAGTAGCCTGCACTTAGTACTACACACG
1 TAGTAGCCTGCACTTAGTACTACACACG
96877933 TGACATCACA
Statistics
Matches: 150, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
49 71 0.47
50 78 0.52
51 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
Found at i:96877902 original size:99 final size:100
Alignment explanation
Indices: 96877756--96877935 Score: 290
Period size: 99 Copynumber: 1.8 Consensus size: 100
96877746 CCAGTACATG
* * *
96877756 TAGTAGCTTGCACTTAGTACTACACACGTGACCTAACCATCTGGTACACGTAGTAGCCTGCACAT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCCGGTACACGTAGTAGCCTGCACAT
96877821 AGTACTACACACGTGATCGAGTTATCGGGTACGCA
66 AGTACTACACACGTGATCGAGTTATCGGGTACGCA
* ** *
96877856 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCCGGTACACGTAGTAGCCTGCACAT
96877920 AGTACTACACACGTGA
66 AGTACTACACACGTGA
96877936 CATCACAACA
Statistics
Matches: 73, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
99 43 0.59
100 30 0.41
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCCGGTACACGTAGTAGCCTGCACAT
AGTACTACACACGTGATCGAGTTATCGGGTACGCA
Found at i:96880937 original size:27 final size:27
Alignment explanation
Indices: 96880808--96880938 Score: 90
Period size: 27 Copynumber: 4.9 Consensus size: 27
96880798 AATACTTTAG
* *
96880808 TTTACCAAATTACTAAAATACCCTCGA
1 TTTACAAAATTACTCAAATACCCTCGA
* **
96880835 CTTGTAAAATTAC-CAAAGTACCC-CTGA
1 TTTACAAAATTACTCAAA-TACCCTC-GA
* **
96880862 TTTACAGAATTACT-ATTTTACCCTCGA
1 TTTACAAAATTACTCA-AATACCCTCGA
* **
96880889 TTTACAGAATTAC-CATTTTACCCTCGA
1 TTTACAAAATTACTCA-AATACCCTCGA
*
96880916 TTTACAAAATTACTGAAATACCC
1 TTTACAAAATTACTCAAATACCC
96880939 CTGTAGGGTA
Statistics
Matches: 82, Mismatches: 15, Indels: 14
0.74 0.14 0.13
Matches are distributed among these distances:
26 4 0.05
27 76 0.93
28 2 0.02
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.33
Consensus pattern (27 bp):
TTTACAAAATTACTCAAATACCCTCGA
Found at i:96880938 original size:54 final size:53
Alignment explanation
Indices: 96880808--96880938 Score: 124
Period size: 54 Copynumber: 2.4 Consensus size: 53
96880798 AATACTTTAG
*
96880808 TTTACCAAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCTGA
1 TTTACAAAATTACT-AAATACCCTCGACTTGTAAAATTACCAAAGTACCCCTGA
* ** ***
96880862 TTTACAGAATTACTATTTTACCCTCGA-TT-TACAGAATTACCATTTTA-CCCTCGA
1 TTTACAAAATTACTA-AATACCCTCGACTTGTA-A-AATTACCAAAGTACCCCT-GA
96880916 TTTACAAAATTACTGAAATACCC
1 TTTACAAAATTACT-AAATACCC
96880939 CTGTAGGGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
52 2 0.03
53 8 0.13
54 51 0.82
55 1 0.02
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.33
Consensus pattern (53 bp):
TTTACAAAATTACTAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCTGA
Found at i:96880953 original size:27 final size:27
Alignment explanation
Indices: 96880923--96881171 Score: 318
Period size: 27 Copynumber: 9.2 Consensus size: 27
96880913 CGATTTACAA
96880923 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
96880950 AATTACTGAAATATCCCTGTACGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
96880977 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
96881004 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
96881031 AATTACTAAAATACCCTTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
96881058 AATTACTAAAATACCCCTGTGGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
96881085 AATTACCGAAATACCCTTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
96881112 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * *
96881139 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
96881166 AATTAC
1 AATTAC
96881172 CATTTTTCCC
Statistics
Matches: 194, Mismatches: 28, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 194 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:96881410 original size:28 final size:28
Alignment explanation
Indices: 96881370--96881451 Score: 141
Period size: 28 Copynumber: 3.0 Consensus size: 28
96881360 GGAGGAAGCG
96881370 TTCTGGTGGCTATGCCACAAATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
96881398 TTCTGGTGGCTATGCCACAAATATCTG-
1 TTCTGGTGGCTATGCCACAAATATCTGT
*
96881425 TTCTGGTGGCTCTGCCAC-AATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
96881452 ATATGGTGAC
Statistics
Matches: 52, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
26 8 0.15
27 17 0.33
28 27 0.52
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (28 bp):
TTCTGGTGGCTATGCCACAAATATCTGT
Found at i:96881440 original size:27 final size:26
Alignment explanation
Indices: 96881369--96881484 Score: 142
Period size: 27 Copynumber: 4.3 Consensus size: 26
96881359 TGGAGGAAGC
96881369 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
96881396 GTTTCTGGTGGCTATGCCACAAATATCT
1 G-TTCTGGTGGCTATGCCAC-AATATCT
*
96881424 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * * **
96881450 GTATATGGTGACTCTATCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
96881477 GTTCTGGT
1 GTTCTGGT
96881485 AGCCATGCTG
Statistics
Matches: 81, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 14 0.17
27 40 0.49
28 27 0.33
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:96881657 original size:6 final size:6
Alignment explanation
Indices: 96881646--96881731 Score: 77
Period size: 6 Copynumber: 14.2 Consensus size: 6
96881636 ATGGGCTTCC
* * *
96881646 TTCTGA TTCTGA TTCTGA TTCTGA TTCTGA TTCTAA TTTTG- TCAGCTGA
1 TTCTGA TTCTGA TTCTGA TTCTGA TTCTGA TTCTGA TTCTGA T--TCTGA
* * *
96881695 TTCTAA TTCTGA TTCTCA TTTTGA TTCT-A GTTCTGA T
1 TTCTGA TTCTGA TTCTGA TTCTGA TTCTGA -TTCTGA T
96881732 AATGTTTCTT
Statistics
Matches: 63, Mismatches: 12, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
5 2 0.03
6 57 0.90
7 3 0.05
8 1 0.02
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (6 bp):
TTCTGA
Found at i:96887111 original size:36 final size:36
Alignment explanation
Indices: 96887064--96887136 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
96887054 GAGATTCACA
*
96887064 GCAGGACTGAGGAGTATAAACTCCTCAAACAACCAT
1 GCAGGAATGAGGAGTATAAACTCCTCAAACAACCAT
* *
96887100 GCAGGAATGAGGAGTATAAACTCCTCGAACCACCAT
1 GCAGGAATGAGGAGTATAAACTCCTCAAACAACCAT
96887136 G
1 G
96887137 ACCATTCAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.37, C:0.25, G:0.22, T:0.16
Consensus pattern (36 bp):
GCAGGAATGAGGAGTATAAACTCCTCAAACAACCAT
Found at i:96894512 original size:16 final size:16
Alignment explanation
Indices: 96894486--96894529 Score: 70
Period size: 16 Copynumber: 2.7 Consensus size: 16
96894476 GGAAAAAGCC
96894486 AAAATGCCGAAATACCG
1 AAAA-GCCGAAATACCG
96894503 AAAAGCCGAAATACCG
1 AAAAGCCGAAATACCG
*
96894519 AAAAGCTGAAA
1 AAAAGCCGAAA
96894530 GTTTGGCTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
16 22 0.85
17 4 0.15
ACGTcount: A:0.52, C:0.20, G:0.18, T:0.09
Consensus pattern (16 bp):
AAAAGCCGAAATACCG
Found at i:96894788 original size:29 final size:28
Alignment explanation
Indices: 96894755--96894854 Score: 119
Period size: 29 Copynumber: 3.5 Consensus size: 28
96894745 AATTTGACTA
*
96894755 GGCCTAACGGGCCATATAAATGTGAGTTG
1 GGCCTAATGGGCCATATAAATGTGA-TTG
* *
96894784 GGCCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGA-TTG
* * *
96894813 GGTCTAATGGGCCATATGAATATGATTG
1 GGCCTAATGGGCCATATAAATGTGATTG
*
96894841 GGCTTAATGGGCCA
1 GGCCTAATGGGCCA
96894855 GATACAGGTA
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
28 15 0.25
29 45 0.75
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (28 bp):
GGCCTAATGGGCCATATAAATGTGATTG
Found at i:96900835 original size:14 final size:13
Alignment explanation
Indices: 96900806--96900843 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
96900796 TATCCTAGAA
96900806 AATTAA-AACAAG
1 AATTAAGAACAAG
*
96900818 AATTAAGAACACAT
1 AATTAAGAACA-AG
96900832 AATTAAGAACAA
1 AATTAAGAACAA
96900844 ATCAAATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 6 0.26
13 5 0.22
14 12 0.52
ACGTcount: A:0.63, C:0.11, G:0.08, T:0.18
Consensus pattern (13 bp):
AATTAAGAACAAG
Found at i:96902552 original size:41 final size:41
Alignment explanation
Indices: 96902483--96902603 Score: 118
Period size: 44 Copynumber: 2.9 Consensus size: 41
96902473 TCAAATATCA
* *
96902483 ATGCCACTGTCACAGACAGGGTCTTACACAAAATCAAATAAG
1 ATGCCAATGTCACAGACATGGTCTTACACAAAATCAAAT-AG
* * * *
96902525 ATGTCAATGTC-CAGACATGGCCTTACACGTAAATCTCAAATGG
1 ATGCCAATGTCACAGACATGGTCTTACAC--AAA-ATCAAATAG
* * *
96902568 ATGCCAACGTCTCAGATATGGTCTTACACAAAATCA
1 ATGCCAATGTCACAGACATGGTCTTACACAAAATCA
96902604 CATATTGGAA
Statistics
Matches: 64, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
41 18 0.28
42 12 0.19
43 13 0.20
44 21 0.33
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.23
Consensus pattern (41 bp):
ATGCCAATGTCACAGACATGGTCTTACACAAAATCAAATAG
Found at i:96904777 original size:12 final size:12
Alignment explanation
Indices: 96904760--96904794 Score: 61
Period size: 12 Copynumber: 2.8 Consensus size: 12
96904750 TTTTCAAAAT
96904760 TTTTATTTTTAG
1 TTTTATTTTTAG
96904772 TTTTATTTTTAG
1 TTTTATTTTTAG
96904784 TTTTCATTTTT
1 TTTT-ATTTTT
96904795 TTTGGCCCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 16 0.73
13 6 0.27
ACGTcount: A:0.14, C:0.03, G:0.06, T:0.77
Consensus pattern (12 bp):
TTTTATTTTTAG
Found at i:96909497 original size:43 final size:43
Alignment explanation
Indices: 96909414--96909530 Score: 123
Period size: 43 Copynumber: 2.7 Consensus size: 43
96909404 AATTTGAGAT
* * * *
96909414 TTACGTGTAAGAGCACGTCTAGGACA-TCAGCATCG-TATTTGA
1 TTACATGTAAGACCACGTCTGGGACAGT-AGCATTGATATTTGA
* * *
96909456 TTTCGTGTGAGACC-CTGTCTGGGACAGTAGCATTGATATTTGA
1 TTACATGTAAGACCAC-GTCTGGGACAGTAGCATTGATATTTGA
*
96909499 TTACATGTAAGACCACGTCTGGGACATTAGCA
1 TTACATGTAAGACCACGTCTGGGACAGTAGCA
96909531 CTGTACGAGC
Statistics
Matches: 62, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
41 1 0.02
42 26 0.42
43 34 0.55
44 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (43 bp):
TTACATGTAAGACCACGTCTGGGACAGTAGCATTGATATTTGA
Found at i:96912450 original size:27 final size:27
Alignment explanation
Indices: 96912371--96912444 Score: 139
Period size: 27 Copynumber: 2.7 Consensus size: 27
96912361 CCTTATGTGA
96912371 TAAAATGATCGAAATACCCCCATAGGG
1 TAAAATGATCGAAATACCCCCATAGGG
96912398 TAAAATGATCGAAATACCCCCATAGGG
1 TAAAATGATCGAAATACCCCCATAGGG
*
96912425 TAGAATGATCGAAATACCCC
1 TAAAATGATCGAAATACCCC
96912445 TGTAGGATAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.41, C:0.23, G:0.18, T:0.19
Consensus pattern (27 bp):
TAAAATGATCGAAATACCCCCATAGGG
Found at i:96916090 original size:26 final size:26
Alignment explanation
Indices: 96916060--96916166 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
96916050 TGAAATTCCC
96916060 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
96916086 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
96916112 ATCATGAAACATTTACCTAA-CCATT
1 ATCATGGAACATTTACCTAACCCATT
*
96916137 ATCATGGAACATTTACCTAACCTATT
1 ATCATGGAACATTTACCTAACCCATT
96916163 ATCA
1 ATCA
96916167 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
25 24 0.31
26 53 0.69
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:96916152 original size:51 final size:52
Alignment explanation
Indices: 96916060--96916166 Score: 189
Period size: 51 Copynumber: 2.1 Consensus size: 52
96916050 TGAAATTCCC
*
96916060 ATCATGGAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATT
*
96916112 ATCATGAAACATTTACCTAA-CCATTATCATGGAACATTTACCTAACCTATT
1 ATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATT
96916163 ATCA
1 ATCA
96916167 ATTTGTATCA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
51 34 0.64
52 19 0.36
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.32
Consensus pattern (52 bp):
ATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATT
Found at i:96916578 original size:43 final size:43
Alignment explanation
Indices: 96916531--96916651 Score: 145
Period size: 43 Copynumber: 2.8 Consensus size: 43
96916521 CATTGTATTG
* **
96916531 TGATTACGTGTAAGACCACGTCTGGGAAATTGGCATCGTTATA
1 TGATTACGTGTAAGACCATGTCTGGGAAATTGGCATCAATATA
* * *
96916574 TGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCAATATG
1 TGATTACGTGTAAGACCATGTCTGGGAAATTGGCATCAATATA
* * * *
96916617 TGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 TGATTACGTGTAAGACCATGTCTGGGAAATTGGCAT
96916652 TGTAGGAGCT
Statistics
Matches: 67, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
42 6 0.09
43 61 0.91
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.31
Consensus pattern (43 bp):
TGATTACGTGTAAGACCATGTCTGGGAAATTGGCATCAATATA
Found at i:96920218 original size:46 final size:44
Alignment explanation
Indices: 96920165--96920286 Score: 167
Period size: 45 Copynumber: 2.7 Consensus size: 44
96920155 ACTGTGAGCT
*
96920165 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGTAAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CTACGAGACGT--GTC
*
96920211 AGTGTAAGACATG-CTGGGACATGCACCAGCTACGAGACGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCTACGAGACGTGTC
96920254 AGTGTAAGACCATGTCTGGGACATGGCATCAGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGC
96920287 ACAGATATGC
Statistics
Matches: 69, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
43 12 0.17
44 6 0.09
45 31 0.45
46 20 0.29
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.20
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCTACGAGACGTGTC
Found at i:96927301 original size:46 final size:45
Alignment explanation
Indices: 96927243--96927511 Score: 159
Period size: 46 Copynumber: 5.7 Consensus size: 45
96927233 GGGCTATTGT
*
96927243 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCATTGTGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCA-TGTGA
* * * * *
96927289 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTAAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCATG-TGA
* * * *
96927337 GTGCTAGTGTAAGGCATGTCTCGGACATGCATCGGCCTCGA-GATGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTC-ATG-TG-A
* * * * *
96927384 -AGTCAGTGTAAGACAAGTCTGGGACATGCATTGG-CT-ACGAGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCATGTGA
* * * * ** *
96927426 CGTGTCAGTATAAGACCATGTCTGGGACATGGTATCGGCACAGATATGCTA
1 -GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTCATGTG--A
* *
96927477 GAGCCTGTGTAAGACCATGCCTGGGACATGGCATC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
96927512 AGCATCTTAC
Statistics
Matches: 171, Mismatches: 37, Indels: 26
0.73 0.16 0.11
Matches are distributed among these distances:
42 1 0.01
43 2 0.01
44 12 0.07
45 15 0.09
46 56 0.33
47 30 0.18
48 23 0.13
49 2 0.01
50 29 0.17
51 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.23
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCATGTGA
Found at i:96931709 original size:43 final size:44
Alignment explanation
Indices: 96931636--96931721 Score: 115
Period size: 43 Copynumber: 1.9 Consensus size: 44
96931626 GACACTCGGA
96931636 TAATCACATATCGTAAATGCCAACGTCCCAGAC-GTGGTCTTACATG
1 TAATCACATATCG--AATGCCAACGTCCCAGACAG-GGTCTTACATG
96931682 TAATCACATATCG-ATGCC-ACTGTCCCAGACAGGGTCTTAC
1 TAATCACATATCGAATGCCAAC-GTCCCAGACAGGGTCTTAC
96931722 TCGCACACAT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
42 2 0.05
43 22 0.58
44 1 0.03
46 13 0.34
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (44 bp):
TAATCACATATCGAATGCCAACGTCCCAGACAGGGTCTTACATG
Found at i:96946285 original size:25 final size:25
Alignment explanation
Indices: 96946251--96946300 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
96946241 AGGTATTATT
96946251 TTGAGTTAGAATTCACAAGTTTAAA
1 TTGAGTTAGAATTCACAAGTTTAAA
96946276 TTGAGTTAGAATTCACAAGTTTAAA
1 TTGAGTTAGAATTCACAAGTTTAAA
96946301 CATAAAAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (25 bp):
TTGAGTTAGAATTCACAAGTTTAAA
Found at i:96946732 original size:23 final size:23
Alignment explanation
Indices: 96946706--96946753 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
96946696 TAAAAAAAAC
96946706 ATGTGTACTTATTAGTAGTAGTA
1 ATGTGTACTTATTAGTAGTAGTA
96946729 ATGTGTACTTATTAGTAGTAGTA
1 ATGTGTACTTATTAGTAGTAGTA
96946752 AT
1 AT
96946754 CTTCTAAGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.31, C:0.04, G:0.21, T:0.44
Consensus pattern (23 bp):
ATGTGTACTTATTAGTAGTAGTA
Found at i:96955788 original size:54 final size:54
Alignment explanation
Indices: 96955730--96955863 Score: 133
Period size: 54 Copynumber: 2.5 Consensus size: 54
96955720 CCTTAATTGA
* * *** * *
96955730 TAAAATGACAGTTTTGCCCCTATGTGCTAAAATGATTGTTTTGCCCTTACGTGG
1 TAAAATGACTGTTTTGCCCCTATGTGCTAAAATGACTGAAATGCCCCTACATGG
** * * * * *
96955784 TAAAATGTTTGTTCTACCCTTATATGGTAAAATGACTGAAATGCCCCTACATGG
1 TAAAATGACTGTTTTGCCCCTATGTGCTAAAATGACTGAAATGCCCCTACATGG
*
96955838 TAAATTGACTGTTTTGCCCCTATGTG
1 TAAAATGACTGTTTTGCCCCTATGTG
96955864 AGGTATTTAT
Statistics
Matches: 59, Mismatches: 21, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
54 59 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (54 bp):
TAAAATGACTGTTTTGCCCCTATGTGCTAAAATGACTGAAATGCCCCTACATGG
Found at i:96955795 original size:27 final size:27
Alignment explanation
Indices: 96955730--96955863 Score: 97
Period size: 27 Copynumber: 5.0 Consensus size: 27
96955720 CCTTAATTGA
** * *
96955730 TAAAATGACAGTTTTGCCCCTATGTGC
1 TAAAATGATTGTTTTGCCCTTATGTGG
*
96955757 TAAAATGATTGTTTTGCCCTTACGTGG
1 TAAAATGATTGTTTTGCCCTTATGTGG
* * * *
96955784 TAAAATGTTTGTTCTACCCTTATATGG
1 TAAAATGATTGTTTTGCCCTTATGTGG
* *** * **
96955811 TAAAATGACTGAAATGCCCCTACATGG
1 TAAAATGATTGTTTTGCCCTTATGTGG
* * *
96955838 TAAATTGACTGTTTTGCCCCTATGTG
1 TAAAATGATTGTTTTGCCCTTATGTG
96955864 AGGTATTTAT
Statistics
Matches: 83, Mismatches: 24, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 83 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
TAAAATGATTGTTTTGCCCTTATGTGG
Found at i:96956226 original size:18 final size:18
Alignment explanation
Indices: 96956203--96956250 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
96956193 TACTATTTAA
96956203 ACTGTTACTGCACTGATT
1 ACTGTTACTGCACTGATT
* * *
96956221 ACTGTTACTACTCTGTTT
1 ACTGTTACTGCACTGATT
*
96956239 ACTGTTAATGCA
1 ACTGTTACTGCA
96956251 ATGGGCCAAG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.23, C:0.21, G:0.15, T:0.42
Consensus pattern (18 bp):
ACTGTTACTGCACTGATT
Found at i:96965439 original size:49 final size:47
Alignment explanation
Indices: 96965365--96965495 Score: 149
Period size: 47 Copynumber: 2.7 Consensus size: 47
96965355 GGTTAAGTGA
* ** *
96965365 GAGCTAGTGTAAGACCATG-CTTGGGACATGGCATCGGCCTCAATTTTGAT
1 GAGCCAGTGTAAGACCATGTC-TGGGACATGGCATC-GAATCAA--TGGAT
** *
96965415 -ATTCAGTGTAAGACCATGTCTGGGACATGGCATCGAATTAATGGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAATCAATGGAT
96965461 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
96965496 AGCATTACAC
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
46 4 0.06
47 32 0.46
48 4 0.06
49 29 0.41
50 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAATCAATGGAT
Found at i:96967525 original size:41 final size:41
Alignment explanation
Indices: 96967468--96967551 Score: 159
Period size: 41 Copynumber: 2.0 Consensus size: 41
96967458 CTTTCTATCA
96967468 TTCTTGTACTACCTTCTCTAAATTATTAATGAAACTAACAT
1 TTCTTGTACTACCTTCTCTAAATTATTAATGAAACTAACAT
*
96967509 TTCTTGTATTACCTTCTCTAAATTATTAATGAAACTAACAT
1 TTCTTGTACTACCTTCTCTAAATTATTAATGAAACTAACAT
96967550 TT
1 TT
96967552 TGTTCCCTTA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.33, C:0.18, G:0.05, T:0.44
Consensus pattern (41 bp):
TTCTTGTACTACCTTCTCTAAATTATTAATGAAACTAACAT
Found at i:96969543 original size:25 final size:25
Alignment explanation
Indices: 96969494--96969562 Score: 74
Period size: 24 Copynumber: 2.9 Consensus size: 25
96969484 TCCGAACTAT
* *
96969494 ATAAT-GAGAAGCTCA-TAAGAGCC
1 ATAATCGAGAAGCTCACAAAGAACC
*
96969517 ATAATCGAGAAGTTCACAAAGAACC
1 ATAATCGAGAAGCTCACAAAGAACC
96969542 AT-ATCCGA-AAGCTCACAAAGA
1 ATAAT-CGAGAAGCTCACAAAGA
96969563 GCAATGTAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
23 5 0.13
24 23 0.59
25 11 0.28
ACGTcount: A:0.46, C:0.20, G:0.17, T:0.16
Consensus pattern (25 bp):
ATAATCGAGAAGCTCACAAAGAACC
Found at i:96971348 original size:42 final size:42
Alignment explanation
Indices: 96971278--96971400 Score: 151
Period size: 43 Copynumber: 2.9 Consensus size: 42
96971268 TTAGGGTTAT
96971278 TTGAG-TTTACGTGTAAGACCATATCTGGGATATGGCATCG-A
1 TTGAGATTT-CGTGTAAGACCATATCTGGGATATGGCATCGAA
* * *
96971319 TATGAGATTTCGTGTAAGACTATAGCTGGGCTATTGGCATCGAA
1 T-TGAGATTTCGTGTAAGACCATATCTGGGATA-TGGCATCGAA
** *
96971363 TTGAGATCCCATGTAAGACCATATCTGGGATATGGCAT
1 TTGAGATTTCGTGTAAGACCATATCTGGGATATGGCAT
96971401 TGGTATGGTA
Statistics
Matches: 69, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
41 1 0.01
42 30 0.43
43 36 0.52
44 2 0.03
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (42 bp):
TTGAGATTTCGTGTAAGACCATATCTGGGATATGGCATCGAA
Found at i:96980054 original size:47 final size:46
Alignment explanation
Indices: 96979902--96980125 Score: 190
Period size: 47 Copynumber: 4.8 Consensus size: 46
96979892 ATATATACGT
* *
96979902 GCTGATACATGTCCC-GAACATGTCTTACACTAGCACA-A-CTCTTAG
1 GCTGATGCATGTCCCAG-ACATGTCTTACACTGGCACACATCTC-TAG
* * * * *
96979947 TC-GATGCATGTCCTAGACACGTCTTACACTGGCTA-TCATCGTCGAG
1 GCTGATGCATGTCCCAGACATGTCTTACACTGGC-ACACATC-TCTAG
* *
96979993 GCTGATGCAAGTCCCAGACATGTCTTACACTGGCACACATCTCTAC
1 GCTGATGCATGTCCCAGACATGTCTTACACTGGCACACATCTCTAG
* * * * *
96980039 GCTGATGCCATGTCCCAGACTTGGTCTTACATTGGCACTCATAATGT-G
1 GCTGATG-CATGTCCCAGACAT-GTCTTACACTGGCACACAT-CTCTAG
** *
96980087 GCCAATGCATGTCCCAAACATGTCTTACACTGGCACACA
1 GCTGATGCATGTCCCAGACATGTCTTACACTGGCACACA
96980126 AGAAGTCTAA
Statistics
Matches: 142, Mismatches: 27, Indels: 19
0.76 0.14 0.10
Matches are distributed among these distances:
44 25 0.18
45 4 0.03
46 31 0.22
47 58 0.41
48 22 0.15
49 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.26
Consensus pattern (46 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTGGCACACATCTCTAG
Found at i:96981937 original size:47 final size:47
Alignment explanation
Indices: 96981869--96982089 Score: 204
Period size: 48 Copynumber: 4.7 Consensus size: 47
96981859 TTTGTGTGCT
* *
96981869 AGTGTAAGA-CATGTCTAGGACAT-GCATCAGCAACATT-ATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-AC-TTAATGAGAGCC
* * *
96981915 AGTGTAAGACCATGTCTGGGACATCGCATCGGTA-TTGAGATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACTT-A-ATGAGAGCC
* ** * *
96981963 AGTATAAGACCATGTCTGGGACATGGTGTCGGC-CTTAATCGCGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACTTAAT---GAGAGCC
*
96982012 AGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTTGATGTATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACTTAATG-A-GAGCC
*
96982059 AGTGTAAGATCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
96982090 TCATCCTACC
Statistics
Matches: 143, Mismatches: 19, Indels: 24
0.77 0.10 0.13
Matches are distributed among these distances:
45 3 0.02
46 12 0.08
47 47 0.33
48 50 0.35
49 31 0.22
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACTTAATGAGAGCC
Found at i:96988489 original size:53 final size:50
Alignment explanation
Indices: 96988398--96988502 Score: 156
Period size: 53 Copynumber: 2.0 Consensus size: 50
96988388 ATTGTACCTG
**
96988398 TCTAAAACCTTATTTTGAGTTTGATAGCAGGAAGGAGGAGTGTAAACTCC
1 TCTAAAACCTTATTTTGAAATTGATAGCAGGAAGGAGGAGTGTAAACTCC
*
96988448 TCTAAAACCTTATTTGGATGAAATTGATAGCAGGAATGAGGAGTGTAAACTCC
1 TCTAAAACCTTATTT---TGAAATTGATAGCAGGAAGGAGGAGTGTAAACTCC
96988501 TC
1 TC
96988503 ACACTTCCAT
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
50 15 0.31
53 34 0.69
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (50 bp):
TCTAAAACCTTATTTTGAAATTGATAGCAGGAAGGAGGAGTGTAAACTCC
Found at i:96993503 original size:7 final size:7
Alignment explanation
Indices: 96993491--96993518 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
96993481 GCCGAAGCCT
96993491 TTTCATA
1 TTTCATA
96993498 TTTCATA
1 TTTCATA
96993505 TTTCATA
1 TTTCATA
96993512 TTTCATA
1 TTTCATA
96993519 ACACTGGGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57
Consensus pattern (7 bp):
TTTCATA
Found at i:96993854 original size:26 final size:25
Alignment explanation
Indices: 96993746--96993853 Score: 132
Period size: 25 Copynumber: 4.4 Consensus size: 25
96993736 CTAGAGGCCT
* *
96993746 AGCCTCTTTTAAT-AACTGGGTC-AA
1 AGCC-CTTTTGATAAACTGGGGCAAA
96993770 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
*
96993795 AGCCCTTTTAATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
* *
96993820 AGCCCTTTTCGGTAAACTGGGGC-AT
1 AGCCCTTTT-GATAAACTGGGGCAAA
96993845 AGCCCTTTT
1 AGCCCTTTT
96993854 TGCACTTCCT
Statistics
Matches: 75, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
23 7 0.09
24 12 0.16
25 45 0.60
26 11 0.15
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (25 bp):
AGCCCTTTTGATAAACTGGGGCAAA
Found at i:96993924 original size:20 final size:20
Alignment explanation
Indices: 96993901--96993967 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
96993891 TTATGAATAC
96993901 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
96993921 ATCATATGCATATCATACAT
1 ATCATGTGCATATCATACAT
96993941 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
96993961 ATCATGT
1 ATCATGT
96993968 ATATCAAATC
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
20 42 0.95
21 2 0.05
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:96993930 original size:40 final size:39
Alignment explanation
Indices: 96993886--96993965 Score: 101
Period size: 40 Copynumber: 2.0 Consensus size: 39
96993876 TCCCAACCTA
96993886 ATGCATTATGAATAC-ATCATGTGCATATCATA-CATATCAT
1 ATGCA-TAT-AATACAATCATGTGCATATCATATCA-ATCAT
*
96993926 ATGCATATCATACATATCATGTGCATATCATATCAATCAT
1 ATGCATATAATACA-ATCATGTGCATATCATATCAATCAT
96993966 GTATATCAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
38 4 0.11
39 3 0.08
40 27 0.75
41 2 0.06
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.35
Consensus pattern (39 bp):
ATGCATATAATACAATCATGTGCATATCATATCAATCAT
Found at i:96993932 original size:11 final size:11
Alignment explanation
Indices: 96993901--96993958 Score: 70
Period size: 11 Copynumber: 5.6 Consensus size: 11
96993891 TTATGAATAC
*
96993901 ATCATGTGCAT
1 ATCATATGCAT
96993912 ATCATA--CAT
1 ATCATATGCAT
96993921 ATCATATGCAT
1 ATCATATGCAT
96993932 ATCATA--CAT
1 ATCATATGCAT
*
96993941 ATCATGTGCAT
1 ATCATATGCAT
96993952 ATCATAT
1 ATCATAT
96993959 CAATCATGTA
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
9 17 0.43
11 23 0.57
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (11 bp):
ATCATATGCAT
Found at i:96993964 original size:9 final size:10
Alignment explanation
Indices: 96993909--96993965 Score: 66
Period size: 9 Copynumber: 5.8 Consensus size: 10
96993899 ACATCATGTG
96993909 CATATCATA-
1 CATATCATAT
96993918 CATATCATAT
1 CATATCATAT
96993928 GCATATCATA-
1 -CATATCATAT
*
96993938 CATATCATGT
1 CATATCATAT
96993948 GCATATCATAT
1 -CATATCATAT
96993959 CA-ATCAT
1 CATATCAT
96993966 GTATATCAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
9 22 0.52
10 2 0.05
11 18 0.43
ACGTcount: A:0.39, C:0.21, G:0.05, T:0.35
Consensus pattern (10 bp):
CATATCATAT
Found at i:97001577 original size:7 final size:7
Alignment explanation
Indices: 97001565--97001592 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
97001555 GCCGAAGCCT
97001565 TTTCATA
1 TTTCATA
97001572 TTTCATA
1 TTTCATA
97001579 TTTCATA
1 TTTCATA
97001586 TTTCATA
1 TTTCATA
97001593 ACACTGGGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57
Consensus pattern (7 bp):
TTTCATA
Found at i:97001928 original size:26 final size:25
Alignment explanation
Indices: 97001820--97001927 Score: 132
Period size: 25 Copynumber: 4.4 Consensus size: 25
97001810 CTGGAGGCCT
*
97001820 AGCCTCTTTTAAT-AACTGGGGC-AA
1 AGCC-CTTTTGATAAACTGGGGCAAA
97001844 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
* *
97001869 AGCCTTTTTAATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
* *
97001894 AGCCCTTTTCGGTAAACTGGGGC-AT
1 AGCCCTTTT-GATAAACTGGGGCAAA
97001919 AGCCCTTTT
1 AGCCCTTTT
97001928 TGCACTTCCT
Statistics
Matches: 74, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
23 7 0.09
24 13 0.18
25 43 0.58
26 11 0.15
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (25 bp):
AGCCCTTTTGATAAACTGGGGCAAA
Found at i:97002006 original size:11 final size:11
Alignment explanation
Indices: 97001975--97002030 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
97001965 TTATGAATAC
97001975 ATCATGTGCAT
1 ATCATGTGCAT
**
97001986 ATCA--CACAT
1 ATCATGTGCAT
97001995 ATCATGTGCAT
1 ATCATGTGCAT
*
97002006 ATCA--TACAT
1 ATCATGTGCAT
97002015 ATCATGTGCAT
1 ATCATGTGCAT
97002026 ATCAT
1 ATCAT
97002031 ATCAATCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:97002030 original size:20 final size:20
Alignment explanation
Indices: 97001975--97002041 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
97001965 TTATGAATAC
*
97001975 ATCATGTGCATATCACACAT
1 ATCATGTGCATATCATACAT
97001995 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
97002015 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
97002035 ATCATGT
1 ATCATGT
97002042 ATATCAAATA
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:97002047 original size:9 final size:10
Alignment explanation
Indices: 97001992--97002047 Score: 55
Period size: 9 Copynumber: 5.7 Consensus size: 10
97001982 GCATATCACA
97001992 CATATCATGT
1 CATATCATGT
*
97002002 GCATATCAT-A
1 -CATATCATGT
97002012 CATATCATGT
1 CATATCATGT
*
97002022 GCATATCATAT
1 -CATATCATGT
97002033 CA-ATCATGT
1 CATATCATGT
97002042 -ATATCA
1 CATATCA
97002048 AATACCATGT
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 1 0.03
9 18 0.47
10 2 0.05
11 17 0.45
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.36
Consensus pattern (10 bp):
CATATCATGT
Found at i:97002105 original size:25 final size:25
Alignment explanation
Indices: 97002077--97002124 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
97002067 ATAATTAAAC
* * *
97002077 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
97002102 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
97002125 CATAATATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:97008406 original size:13 final size:13
Alignment explanation
Indices: 97008390--97008424 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
97008380 CTAGACACAC
97008390 GCCCGTGTGTCCT
1 GCCCGTGTGTCCT
97008403 GCCCGTGTGTCCT
1 GCCCGTGTGTCCT
97008416 GCCCGTGTG
1 GCCCGTGTG
97008425 GAAAAAAGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.00, C:0.37, G:0.34, T:0.29
Consensus pattern (13 bp):
GCCCGTGTGTCCT
Found at i:97009092 original size:62 final size:62
Alignment explanation
Indices: 97008995--97009123 Score: 249
Period size: 62 Copynumber: 2.1 Consensus size: 62
97008985 CACATCATTA
*
97008995 TTCCCAATTTACATCTGATGTTAGTCCCATTGAATTTCTCGGTTCTCTGATGGATATCTCAT
1 TTCCCAATTTACATCTGATGTTAGTCCCATTGAATTTCTCGGTTCTCTAATGGATATCTCAT
97009057 TTCCCAATTTACATCTGATGTTAGTCCCATTGAATTTCTCGGTTCTCTAATGGATATCTCAT
1 TTCCCAATTTACATCTGATGTTAGTCCCATTGAATTTCTCGGTTCTCTAATGGATATCTCAT
97009119 TTCCC
1 TTCCC
97009124 GTCAATTCAT
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
62 66 1.00
ACGTcount: A:0.21, C:0.24, G:0.13, T:0.42
Consensus pattern (62 bp):
TTCCCAATTTACATCTGATGTTAGTCCCATTGAATTTCTCGGTTCTCTAATGGATATCTCAT
Found at i:97009094 original size:35 final size:35
Alignment explanation
Indices: 97008995--97009094 Score: 83
Period size: 35 Copynumber: 3.1 Consensus size: 35
97008985 CACATCATTA
97008995 TTCCCAATTTACATCTGATGTTAGTCCCATTGAAT
1 TTCCCAATTTACATCTGATGTTAGTCCCATTGAAT
* ** * *
97009030 TTCTC-GGTT-C-TCTGATG-GA-T---ATCT-CAT
1 TTCCCAATTTACATCTGATGTTAGTCCCAT-TGAAT
97009057 TTCCCAATTTACATCTGATGTTAGTCCCATTGAAT
1 TTCCCAATTTACATCTGATGTTAGTCCCATTGAAT
97009092 TTC
1 TTC
97009095 TCGGTTCTCT
Statistics
Matches: 45, Mismatches: 10, Indels: 20
0.60 0.13 0.27
Matches are distributed among these distances:
27 8 0.18
28 3 0.07
29 1 0.02
30 8 0.18
31 2 0.04
32 8 0.18
33 1 0.02
34 3 0.07
35 11 0.24
ACGTcount: A:0.22, C:0.23, G:0.13, T:0.42
Consensus pattern (35 bp):
TTCCCAATTTACATCTGATGTTAGTCCCATTGAAT
Found at i:97014631 original size:48 final size:48
Alignment explanation
Indices: 97014569--97015089 Score: 889
Period size: 48 Copynumber: 10.9 Consensus size: 48
97014559 TATATATGTG
* *
97014569 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
97014617 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
97014665 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
97014713 TGTGGTAACGCTGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* * *
97014761 TGTGGTAAAGCCGAATGGCTAATATGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
97014809 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* * *
97014857 TGTGGTAAAGCCGAATGGATAATGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
97014905 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
97014953 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
97015001 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
97015049 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
97015090 GTGTGTATAT
Statistics
Matches: 442, Mismatches: 31, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 442 1.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
Found at i:97015280 original size:37 final size:37
Alignment explanation
Indices: 97015230--97015327 Score: 178
Period size: 37 Copynumber: 2.6 Consensus size: 37
97015220 GGAAATATAT
97015230 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
97015267 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
97015304 TCCGGGTAAGACCCGATAACTACG
1 TCCGGGTAAGACCCGATGACTACG
97015328 CGCGGGGACT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:97025703 original size:20 final size:22
Alignment explanation
Indices: 97025648--97025697 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
97025638 TGGAGGCAAT
97025648 GCACACGCTCGTGTGCATATGG
1 GCACACGCTCGTGTGCATATGG
97025670 GCACACGCTCGTGTGCAT-TGG
1 GCACACGCTCGTGTGCATATGG
97025691 GACACAC
1 G-CACAC
97025698 CCGTGTCCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 4 0.15
22 23 0.85
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (22 bp):
GCACACGCTCGTGTGCATATGG
Found at i:97031807 original size:24 final size:24
Alignment explanation
Indices: 97031778--97031859 Score: 87
Period size: 24 Copynumber: 3.5 Consensus size: 24
97031768 GGCTATATAA
*
97031778 CGGGAAGCTCA-TAAGAGCCATAAT
1 CGGGAAGCTCACAAAGAGCCAT-AT
* *
97031802 CGGGAAGTTCACAAAGAACCATAT
1 CGGGAAGCTCACAAAGAGCCATAT
*
97031826 CGGGAAACTCACAAAGAGCC-TAT
1 CGGGAAGCTCACAAAGAGCCATAT
* *
97031849 TGGAAAGCTCA
1 CGGGAAGCTCA
97031860 ATAAGAGTCA
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
23 11 0.23
24 29 0.60
25 8 0.17
ACGTcount: A:0.39, C:0.22, G:0.23, T:0.16
Consensus pattern (24 bp):
CGGGAAGCTCACAAAGAGCCATAT
Found at i:97034522 original size:412 final size:409
Alignment explanation
Indices: 97033730--97034556 Score: 1530
Period size: 412 Copynumber: 2.0 Consensus size: 409
97033720 TCTAAAAGAA
* *
97033730 ACATACAGGTGGATTACACTTTGCCAAATAGATTATTTTACTAGAATAGGCCTAAATTTCAAACT
1 ACATACAGGTGGATTACACTTTGCCAAATAGATTATTTTACTAGAATACGCCTAAATTTCAAACC
97033795 CGCCAAACTTGGGATGTGACATCCTTAATCTCTTTGGGATAAATTCGTTTTCCCAATATGATCCT
66 CGCCAAACTTGGGATGTGACATCCTTAATCTCTTTGGGATAAATTCGTTTTCCCAATATGATCCT
*
97033860 ATTTTATCTATGGTATTCATACATCTTCCTTATTGAAAATTCAATTACTATTAGTAATCAAGTCA
131 ATTTTATCTATAGTATTCATACATCTTCCTTATTGAAAATTCAATTACTATTAGTAATCAAGTCA
97033925 TCTATCACAAAGGCAAACAACTCGTGGTCACGTTTACTTTCCATCTATCTGTAATGCCAATGAGA
196 TCTATCACAAAGGCAAACAACTCGTGGTCACGTTTACTTTCCATCTATCTGTAATGCCAATGAGA
* * *
97033990 GGATATCATTTACCCATTAGCTGGGCTATGAATTTCACTATTGTGAATGATTTTACATATTGTAG
261 GGATATCATTTACCCATTAGCTGGGCTATGAATTTCACTATTGTGAATGATGTTACATATTATAA
97034055 AAGTCGTATATCCAATGCACCAACTTTCGATTCCTTATCTATTTTAAGTCAAGCTTTTACCTACA
326 AAGTCGTATATCCAATGCACCAACTTTCGATTCCTTATCTATTTTAAGTCAAGCTTTTACCTACA
97034120 CCAAACTATACGAGTCATG
391 CCAAACTATACGAGTCATG
97034139 ACATACAGGTGGATTACACTTTGCCAAATAGATTATTTTACTAGAATACGCCTAAATTTCAAACC
1 ACATACAGGTGGATTACACTTTGCCAAATAGATTATTTTACTAGAATACGCCTAAATTTCAAACC
*
97034204 CGCCAGACTTGGGATGTGACATCCTTAATCTCTTTGGGATAAATTCGTTTTCCCAATATGATCCT
66 CGCCAAACTTGGGATGTGACATCCTTAATCTCTTTGGGATAAATTCGTTTTCCCAATATGATCCT
*
97034269 ATTTTATCTCATAGTATTCATTACATCTTCCTTCTTGAAAATTCAATTACTATTAGTAATCAAGT
131 ATTTTATCT-ATAGTATTCA-TACATCTTCCTTATTGAAAATTCAATTACTATTAGTAATCAAGT
97034334 CATCTATCACAAAGGCAAACAACTCGTGGTCACGTTTACTTTCCATCTATCATGTAATGCCAATG
194 CATCTATCACAAAGGCAAACAACTCGTGGTCACGTTTACTTTCCATCTATC-TGTAATGCCAATG
97034399 AGAGGATATCATTTACCCATTAGCTGGGCTATGAATTTCACTATTGTGAATGATGTTACATATTA
258 AGAGGATATCATTTACCCATTAGCTGGGCTATGAATTTCACTATTGTGAATGATGTTACATATTA
*
97034464 TAAAAGTCGTATATCCAATGCACCAGCTTTCGATTCCTTATCTATTTTAAGTCAAGCTTTTACCT
323 TAAAAGTCGTATATCCAATGCACCAACTTTCGATTCCTTATCTATTTTAAGTCAAGCTTTTACCT
*
97034529 ACATCAAACTATACGAGTCATG
388 ACACCAAACTATACGAGTCATG
97034551 -CATACA
1 ACATACA
97034557 TAGTTCACCA
Statistics
Matches: 405, Mismatches: 10, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
409 136 0.34
410 9 0.02
411 100 0.25
412 160 0.40
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.35
Consensus pattern (409 bp):
ACATACAGGTGGATTACACTTTGCCAAATAGATTATTTTACTAGAATACGCCTAAATTTCAAACC
CGCCAAACTTGGGATGTGACATCCTTAATCTCTTTGGGATAAATTCGTTTTCCCAATATGATCCT
ATTTTATCTATAGTATTCATACATCTTCCTTATTGAAAATTCAATTACTATTAGTAATCAAGTCA
TCTATCACAAAGGCAAACAACTCGTGGTCACGTTTACTTTCCATCTATCTGTAATGCCAATGAGA
GGATATCATTTACCCATTAGCTGGGCTATGAATTTCACTATTGTGAATGATGTTACATATTATAA
AAGTCGTATATCCAATGCACCAACTTTCGATTCCTTATCTATTTTAAGTCAAGCTTTTACCTACA
CCAAACTATACGAGTCATG
Found at i:97045881 original size:21 final size:21
Alignment explanation
Indices: 97045848--97045887 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
97045838 TAAATAATGA
*
97045848 TTTAAAAACATAGATATTATC
1 TTTAAAAACATAGAAATTATC
* *
97045869 TTTAAAGATATAGAAATTA
1 TTTAAAAACATAGAAATTA
97045888 AATAAAAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.50, C:0.05, G:0.07, T:0.38
Consensus pattern (21 bp):
TTTAAAAACATAGAAATTATC
Found at i:97053762 original size:45 final size:45
Alignment explanation
Indices: 97053659--97053832 Score: 161
Period size: 45 Copynumber: 3.9 Consensus size: 45
97053649 ATGCCTAAAG
* ** *
97053659 ATGAGTAATACCATAGCTAAAAGATGCTATGACATCACCA-AACTG
1 ATGAGTAAGACCATAGCTAAAAGATGCTATGACATCATGATAAC-A
* * * * *
97053704 ATGTGTAAGACCATAGTTGAAAGATGTTATGGCATCATGATAACA
1 ATGAGTAAGACCATAGCTAAAAGATGCTATGACATCATGATAACA
* * * ** * *
97053749 ATGAGTAAAACCATGGCTGAAAGATGCTATGGTATCATGGTAATA
1 ATGAGTAAGACCATAGCTAAAAGATGCTATGACATCATGATAACA
* * *
97053794 AGGAGTAAGACCATAGCTAAAAGACGTTATGACATCATG
1 ATGAGTAAGACCATAGCTAAAAGATGCTATGACATCATG
97053833 TGAAAGCACA
Statistics
Matches: 103, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
45 100 0.97
46 3 0.03
ACGTcount: A:0.40, C:0.14, G:0.21, T:0.25
Consensus pattern (45 bp):
ATGAGTAAGACCATAGCTAAAAGATGCTATGACATCATGATAACA
Found at i:97058584 original size:20 final size:20
Alignment explanation
Indices: 97058559--97058612 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
97058549 TTTAAGAGAC
97058559 ACACACCCGTGTGGCTTGGA
1 ACACACCCGTGTGGCTTGGA
97058579 ACACACCCGTGTGGCTTGGA
1 ACACACCCGTGTGGCTTGGA
* *
97058599 ACACGCCCGCGTGG
1 ACACACCCGTGTGG
97058613 GAAGGCCGTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.19, C:0.33, G:0.31, T:0.17
Consensus pattern (20 bp):
ACACACCCGTGTGGCTTGGA
Done.