Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 292 of 322
Found at i:97061093 original size:19 final size:19
Alignment explanation
Indices: 97061066--97061105 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
97061056 TGAAAATGTG
*
97061066 TAAGTTATGCCTATAAATT
1 TAAGCTATGCCTATAAATT
*
97061085 TAAGCTATGCCTATGAATT
1 TAAGCTATGCCTATAAATT
97061104 TA
1 TA
97061106 TGATGACACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.40
Consensus pattern (19 bp):
TAAGCTATGCCTATAAATT
Found at i:97068599 original size:42 final size:42
Alignment explanation
Indices: 97068552--97068634 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 42
97068542 GGCTTATACA
*
97068552 AAATCTCAT-ATCGATGCCATATCACAGATATGATCTTACACG
1 AAATCTCATAAT-GATGCCATATCACAAATATGATCTTACACG
* *
97068594 AAATCTCATAATGATGCCATATCCCAAATATGGTCTTACAC
1 AAATCTCATAATGATGCCATATCACAAATATGATCTTACAC
97068635 ATAGTCTCGG
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
42 35 0.95
43 2 0.05
ACGTcount: A:0.36, C:0.24, G:0.11, T:0.29
Consensus pattern (42 bp):
AAATCTCATAATGATGCCATATCACAAATATGATCTTACACG
Found at i:97070736 original size:31 final size:31
Alignment explanation
Indices: 97070695--97070758 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
97070685 CCTTTTCATA
*
97070695 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
** *
97070726 TTTCAAATTTCATATTACTGGGCTGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
97070757 TT
1 TT
97070759 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:97071027 original size:47 final size:47
Alignment explanation
Indices: 97070973--97071069 Score: 167
Period size: 47 Copynumber: 2.1 Consensus size: 47
97070963 CCTTGCCTCT
*
97070973 TTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCCC
**
97071020 TTTAATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCCC
97071067 TTT
1 TTT
97071070 TTCACTTCCC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.30
Consensus pattern (47 bp):
TTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:97071031 original size:23 final size:24
Alignment explanation
Indices: 97070971--97071070 Score: 157
Period size: 24 Copynumber: 4.2 Consensus size: 24
97070961 GGCCTTGCCT
*
97070971 CTTTTAATAACTGGGGCAAAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
97070995 CTTTTTATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
97071019 C-TTTAATAACTGGGGCGTAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
97071042 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
97071066 CTTTT
1 CTTTT
97071071 TCACTTCCCC
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
23 21 0.30
24 48 0.70
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:97071145 original size:20 final size:20
Alignment explanation
Indices: 97071120--97071186 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
97071110 TTATGGATAC
97071120 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
97071140 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
97071160 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
97071180 ACCATGT
1 ATCATGT
97071187 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:97071151 original size:11 final size:11
Alignment explanation
Indices: 97071120--97071175 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
97071110 TTATGGATAC
97071120 ATCATGTGCAT
1 ATCATGTGCAT
*
97071131 ATCA--TACAT
1 ATCATGTGCAT
97071140 ATCATGTGCAT
1 ATCATGTGCAT
*
97071151 ATCA--TACAT
1 ATCATGTGCAT
*
97071160 GTCATGTGCAT
1 ATCATGTGCAT
97071171 ATCAT
1 ATCAT
97071176 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:97078843 original size:31 final size:31
Alignment explanation
Indices: 97078802--97078865 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
97078792 CCTTTTCATA
*
97078802 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
97078833 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
97078864 TT
1 TT
97078866 ACTGTAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:97079105 original size:24 final size:24
Alignment explanation
Indices: 97079059--97079224 Score: 196
Period size: 24 Copynumber: 7.0 Consensus size: 24
97079049 GCTTTATCGT
*
97079059 ATAACTGGAGGCAT-TGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
97079084 ATAACTGGGGCA-ATATCCCTTTTT
1 ATAACTGGGGCATA-AGCCCTTTTA
*
97079108 ATAACTAGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
97079131 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
97079155 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
97079179 ATAACTGGGGAATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
97079202 ATAACTTGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
97079225 TCACTTCCTC
Statistics
Matches: 122, Mismatches: 14, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
23 40 0.33
24 71 0.58
25 11 0.09
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.31
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:97079176 original size:71 final size:71
Alignment explanation
Indices: 97079059--97079224 Score: 219
Period size: 71 Copynumber: 2.3 Consensus size: 71
97079049 GCTTTATCGT
* * * *
97079059 ATAACTGGAGGCAT-TGCCTCTTTTAATAACTGGGGCAATATCCCTTTTTATAACTAGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAATAGCCCTTTTGATAACTAGGGAATAA
97079123 GCCCTTTA
64 GCCCTTTA
* * *
97079131 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGC-ATAAGCCCTTTTGATAACTGGGGAATAAG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAT-AGCCCTTTTGATAACTAGGGAATAAG
97079195 CCCTTTA
65 CCCTTTA
*
97079202 ATAACTTGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
97079225 TCACTTCCTC
Statistics
Matches: 83, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
70 2 0.02
71 70 0.84
72 11 0.13
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.31
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAATAGCCCTTTTGATAACTAGGGAATAAGC
CCTTTA
Found at i:97079224 original size:47 final size:48
Alignment explanation
Indices: 97079078--97079224 Score: 192
Period size: 47 Copynumber: 3.1 Consensus size: 48
97079068 GGCATTGCCT
* *
97079078 CTTTTAATAACTGGGGCAAT-ATCCCTTTTTATAACTAGGGCATAAGCC
1 CTTTTAATAACTGGGG-AATAAGCCCTTTTAATAACTAGGGCATAAGCC
** * *
97079126 C-TTTAATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGAATAAGCCCTTTTAATAACTAGGGCATAAGCC
* *
97079173 CTTTTGATAACTGGGGAATAAGCCC-TTTAATAACTTGGGCATAAGCC
1 CTTTTAATAACTGGGGAATAAGCCCTTTTAATAACTAGGGCATAAGCC
97079220 CTTTT
1 CTTTT
97079225 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
46 1 0.01
47 65 0.75
48 21 0.24
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.32
Consensus pattern (48 bp):
CTTTTAATAACTGGGGAATAAGCCCTTTTAATAACTAGGGCATAAGCC
Found at i:97079300 original size:20 final size:20
Alignment explanation
Indices: 97079275--97079313 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
97079265 TATGAATACA
97079275 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
97079295 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
97079314 ACCATGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:97079319 original size:20 final size:20
Alignment explanation
Indices: 97079276--97079320 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
97079266 ATGAATACAT
**
97079276 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAC
97079296 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
97079316 CATGT
1 CATGT
97079321 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:97083936 original size:79 final size:81
Alignment explanation
Indices: 97083838--97084019 Score: 239
Period size: 79 Copynumber: 2.3 Consensus size: 81
97083828 TACTCGTTCA
* *
97083838 AATGCCTTCGGGACATAGCCCGGTTA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGTAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
*
97083901 ATTTAGTAACTT-GCACC
65 ATATAGTAACTTAGCA-C
**
97083918 AATGCCTTCGGG-CTTAGCCC-GTAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGTAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
97083981 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
97083997 AAAGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
97084020 ACATCATTCG
Statistics
Matches: 89, Mismatches: 8, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
78 6 0.07
79 59 0.66
80 23 0.26
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGTAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:97083961 original size:39 final size:40
Alignment explanation
Indices: 97083836--97084018 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
97083826 GCTACTCGTT
* *
97083836 CAAATGCCTTCGGGACATAGCCCGGTTA-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GTAATTAGTAACTCGCA
* * * *
97083876 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGTAATTAGTAACTCGCA
*
97083916 CCAATGCCTTCGGG-CTTAGCCCGTAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGTAATTAGTAACTCGCA
* * * * *
97083955 CAAATGCCTTC-GGATCTTAGTCCG-GATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGTAAT-TAGTAAC-TCGCA
97083996 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
97084019 GACATCATTC
Statistics
Matches: 119, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.02
39 34 0.29
40 72 0.61
41 11 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGTAATTAGTAACTCGCA
Found at i:97092058 original size:79 final size:81
Alignment explanation
Indices: 97091949--97092131 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
97091939 TACTCGTTCA
*
97091949 AATGCCTTCGGGACATAGCCC-GATTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
97092012 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
97092029 AATGCCTTCGGG-CTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
97092092 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
97092108 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
97092132 CATCATTCGA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 3 0.03
79 57 0.63
80 31 0.34
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:97092131 original size:40 final size:40
Alignment explanation
Indices: 97091947--97092131 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
97091937 GCTACTCGTT
*
97091947 CAAATGCCTTCGGGACATAGCCC-GATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TATAGTAACTCGCA
* *
97091987 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
97092027 CCAATGCCTTCGGG-CTTAGCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
97092066 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
97092107 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
97092132 CATCATTCGA
Statistics
Matches: 128, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
38 2 0.02
39 34 0.27
40 79 0.62
41 13 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:97102137 original size:12 final size:12
Alignment explanation
Indices: 97102120--97102144 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
97102110 ATGTTAGCTA
97102120 AATTGACTATCT
1 AATTGACTATCT
97102132 AATTGACTATCT
1 AATTGACTATCT
97102144 A
1 A
97102145 CTATGTTGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (12 bp):
AATTGACTATCT
Found at i:97102466 original size:18 final size:18
Alignment explanation
Indices: 97102428--97102467 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
97102418 GAGCATTGAT
*
97102428 GTGTATGAGTATTCCTGA
1 GTGTATGAGTATTCCTAA
97102446 GTGTATGAGTATTACC-AA
1 GTGTATGAGTATT-CCTAA
97102464 GTGT
1 GTGT
97102468 CCGTTGCAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.25, C:0.10, G:0.28, T:0.38
Consensus pattern (18 bp):
GTGTATGAGTATTCCTAA
Found at i:97109325 original size:20 final size:20
Alignment explanation
Indices: 97109300--97109342 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
97109290 GACACATATC
*
97109300 ACAAAATAACCAGGTTCCCT
1 ACAAAATAACCAGGCTCCCT
97109320 ACAAAATAACCAGGCTCCCT
1 ACAAAATAACCAGGCTCCCT
97109340 ACA
1 ACA
97109343 CATGCCATAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.42, C:0.33, G:0.09, T:0.16
Consensus pattern (20 bp):
ACAAAATAACCAGGCTCCCT
Found at i:97110072 original size:52 final size:52
Alignment explanation
Indices: 97110001--97110101 Score: 148
Period size: 52 Copynumber: 1.9 Consensus size: 52
97109991 AAACCCAAAT
*
97110001 ACATGTATCGCATCCATTATGAACTCAGACCAACTCAACGACCTCGGATGCC
1 ACATATATCGCATCCATTATGAACTCAGACCAACTCAACGACCTCGGATGCC
* ** * *
97110053 ACATATATCTCATCCATTATGAACTTGGACCAACTGAACGAGCTCGGAT
1 ACATATATCGCATCCATTATGAACTCAGACCAACTCAACGACCTCGGAT
97110102 TTTTTAACTT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 43 1.00
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.24
Consensus pattern (52 bp):
ACATATATCGCATCCATTATGAACTCAGACCAACTCAACGACCTCGGATGCC
Found at i:97111080 original size:19 final size:19
Alignment explanation
Indices: 97111056--97111130 Score: 62
Period size: 20 Copynumber: 3.8 Consensus size: 19
97111046 TTTCTTTCAA
97111056 ATTTTTCCTATGCATGCCC
1 ATTTTTCCTATGCATGCCC
* ** *
97111075 ATTTTTGTCTA-AAAAGCCC
1 ATTTTT-CCTATGCATGCCC
97111094 ATTTTTTCCTATGCATGCCC
1 A-TTTTTCCTATGCATGCCC
*
97111114 TTTTTATTCCTATGCAT
1 -ATTT-TTCCTATGCAT
97111131 TCCCTCTTAA
Statistics
Matches: 42, Mismatches: 9, Indels: 8
0.71 0.15 0.14
Matches are distributed among these distances:
19 15 0.36
20 16 0.38
21 11 0.26
ACGTcount: A:0.20, C:0.25, G:0.09, T:0.45
Consensus pattern (19 bp):
ATTTTTCCTATGCATGCCC
Found at i:97111125 original size:21 final size:20
Alignment explanation
Indices: 97111057--97111135 Score: 72
Period size: 21 Copynumber: 4.0 Consensus size: 20
97111047 TTCTTTCAAA
97111057 TTTTTCCTATGCATGCCCATT
1 TTTTTCCTATGCATGCCC-TT
* ** * *
97111078 TTTGT-CTA-AAAAGCCCAT
1 TTTTTCCTATGCATGCCCTT
97111096 TTTTTCCTATGCATGCCCTT
1 TTTTTCCTATGCATGCCCTT
*
97111116 TTTATTCCTATGCATTCCCT
1 TTT-TTCCTATGCATGCCCT
97111136 CTTAATTTAT
Statistics
Matches: 44, Mismatches: 11, Indels: 6
0.72 0.18 0.10
Matches are distributed among these distances:
18 5 0.11
19 8 0.18
20 12 0.27
21 19 0.43
ACGTcount: A:0.18, C:0.28, G:0.09, T:0.46
Consensus pattern (20 bp):
TTTTTCCTATGCATGCCCTT
Found at i:97114716 original size:22 final size:24
Alignment explanation
Indices: 97114686--97114735 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
97114676 TATACCCTAC
* *
97114686 CGGTTTGGC-ACGA-CCTATCACA
1 CGGTCTGGCAACGAGCCGATCACA
97114708 CGGTCTGGCATACGAGCCGATCACA
1 CGGTCTGGCA-ACGAGCCGATCACA
97114733 CGG
1 CGG
97114736 ACTTGTGGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 8 0.35
24 4 0.17
25 11 0.48
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.18
Consensus pattern (24 bp):
CGGTCTGGCAACGAGCCGATCACA
Found at i:97120228 original size:49 final size:49
Alignment explanation
Indices: 97120073--97120249 Score: 207
Period size: 49 Copynumber: 3.6 Consensus size: 49
97120063 CAAGGCTATA
* * * * *
97120073 TCCCAGATATGGTCTTACATAGGATCACGTA--CTACTGCCAATGCCATG
1 TCCCAGACATGGTCTTACATGGGATCTCATATTCGA-TGCCAATGCCATG
* * *
97120121 TCCCAAACATGGTCTTACATGGGATATTACATATT-GATGCCAATGCCATA
1 TCCCAGACATGGTCTTACATGGGAT-CT-CATATTCGATGCCAATGCCATG
*
97120171 TCCTAGACATGGTCTTACATGGGATCTCATATTCGATGCCAATGCCATG
1 TCCCAGACATGGTCTTACATGGGATCTCATATTCGATGCCAATGCCATG
* *
97120220 TCCCAGACATGGTCCTACATGGGATTTCAT
1 TCCCAGACATGGTCTTACATGGGATCTCAT
97120250 TGGTCACGGG
Statistics
Matches: 109, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
48 28 0.26
49 42 0.39
50 38 0.35
51 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (49 bp):
TCCCAGACATGGTCTTACATGGGATCTCATATTCGATGCCAATGCCATG
Found at i:97123863 original size:52 final size:50
Alignment explanation
Indices: 97123744--97123876 Score: 176
Period size: 50 Copynumber: 2.6 Consensus size: 50
97123734 ACAATCTAGT
* *
97123744 ACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCGGAT
1 ACACGTAGTAGCCTGCACATAGTACTACACACGTGACCTAACCATCGGAA
* * ***
97123794 ACACGTAGTAGCATGCACCTAGTACTACACACGTGACCTAAAACCATTTTAA
1 ACACGTAGTAGCCTGCACATAGTACTACACACGTGACCT--AACCATCGGAA
*
97123846 ACACATAGTAGCCTGCACATAGTACTACACA
1 ACACGTAGTAGCCTGCACATAGTACTACACA
97123877 TGTGTTCTTA
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
50 37 0.51
52 35 0.49
ACGTcount: A:0.35, C:0.29, G:0.15, T:0.22
Consensus pattern (50 bp):
ACACGTAGTAGCCTGCACATAGTACTACACACGTGACCTAACCATCGGAA
Found at i:97132389 original size:39 final size:39
Alignment explanation
Indices: 97132225--97132407 Score: 170
Period size: 40 Copynumber: 4.6 Consensus size: 39
97132215 TTGAATGCTG
* * * * * * *
97132225 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTATGTCCCGAAGGCATTGTGC-GAGTTACTAAA
* * * *
97132265 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTATG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
* **
97132305 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTATGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
97132345 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTATGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
97132384 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTATGTCCCGAAGGCATT
97132408 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
39 38 0.31
40 74 0.61
41 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGGTTATGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:97132427 original size:79 final size:80
Alignment explanation
Indices: 97132261--97132442 Score: 190
Period size: 79 Copynumber: 2.3 Consensus size: 80
97132251 GCTAAGTGAA
* * * *
97132261 TATATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGG
1 TATATCCGGGTTAAG-TCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGG
** ** *
97132325 CATTCGTGCGAGTTGT
65 CATTCGAACGAGGAGC
* * * * *
97132341 TAAATCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 TATATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
*
97132405 ATTTGAACGAGGAGC
66 ATTCGAACGAGGAGC
*
97132420 TATATCC-GGTTAAATCCCGAAGG
1 TATATCCGGGTTAAGTCCCGAAGG
97132443 TACGTGATTT
Statistics
Matches: 83, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
78 14 0.17
79 50 0.60
80 19 0.23
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (80 bp):
TATATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
ATTCGAACGAGGAGC
Found at i:97133850 original size:28 final size:29
Alignment explanation
Indices: 97133808--97133922 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
97133798 TACCTGTAAC
* *
97133808 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
97133836 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
* *
97133865 TGGCCTATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
97133894 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
97133922 T
1 T
97133923 TCATGCTCAC
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 27 0.36
29 47 0.63
30 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:97133905 original size:58 final size:57
Alignment explanation
Indices: 97133799--97133909 Score: 152
Period size: 58 Copynumber: 1.9 Consensus size: 57
97133789 AATTTCACAT
*
97133799 ACCTGTAACTGGCCCATTAAGCCCAATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTAACTGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
* * * *
97133856 ACCTGTATA-TGGCCTATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTGTA-ACTGGCCCATTAAGCCC-AATCACATTCATATGGCCCATTAGGCCCA
97133910 GTCACATTCA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
57 20 0.43
58 27 0.57
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (57 bp):
ACCTGTAACTGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:97134023 original size:19 final size:19
Alignment explanation
Indices: 97133990--97134043 Score: 83
Period size: 19 Copynumber: 2.9 Consensus size: 19
97133980 TGGGCCATAC
*
97133990 AGCCCA-TCGGGCCCATTT
1 AGCCCATTCCGGCCCATTT
*
97134008 AGCCTATTCCGGCCCATTT
1 AGCCCATTCCGGCCCATTT
97134027 AGCCCATTCCGGCCCAT
1 AGCCCATTCCGGCCCAT
97134044 ATGGCCAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
18 5 0.16
19 27 0.84
ACGTcount: A:0.17, C:0.41, G:0.19, T:0.24
Consensus pattern (19 bp):
AGCCCATTCCGGCCCATTT
Found at i:97134184 original size:24 final size:24
Alignment explanation
Indices: 97134152--97134202 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
97134142 GTAGCCAAAC
*
97134152 TTTCGGCTTTTCGGCATTTCAACT
1 TTTCAGCTTTTCGGCATTTCAACT
*
97134176 TTTCAGCTTTTCGGCATTTCAGCT
1 TTTCAGCTTTTCGGCATTTCAACT
97134200 TTT
1 TTT
97134203 GTCGATACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.12, C:0.24, G:0.16, T:0.49
Consensus pattern (24 bp):
TTTCAGCTTTTCGGCATTTCAACT
Found at i:97135307 original size:16 final size:16
Alignment explanation
Indices: 97135286--97135316 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
97135276 AAAAATTCAA
97135286 GATTTCGGGATTTTTT
1 GATTTCGGGATTTTTT
97135302 GATTTCGGGATTTTT
1 GATTTCGGGATTTTT
97135317 GTGGCGTTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.13, C:0.06, G:0.26, T:0.55
Consensus pattern (16 bp):
GATTTCGGGATTTTTT
Found at i:97136272 original size:50 final size:50
Alignment explanation
Indices: 97136213--97136449 Score: 267
Period size: 50 Copynumber: 4.7 Consensus size: 50
97136203 TCGATACGCA
* *
97136213 TAGTAGCCTGCACTTAGTACTACACATGCGAGCTAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGGTACACG
** * * * *
97136263 TAGTAGCCTGCACTTAGTACTACACACATGACCTGACCATCAGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGGTACACG
* * * * * * *
97136313 TAGTAGCCTGCACTTAGTCCTATACACGTGACCGAAGCTATCGGGTACACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAA-CAATCTGGTACACG
* * * * *
97136364 TAGTAGCCTGCACTTAGTACGACACATGCAACCTAACAATCTAGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGGTACACG
* *
97136414 TAGTAGACTGCACTTAGTACTACACACGTGACCTAA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
97136450 AACCATTTTA
Statistics
Matches: 152, Mismatches: 34, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
50 113 0.74
51 39 0.26
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGGTACACG
Found at i:97136338 original size:28 final size:28
Alignment explanation
Indices: 97136257--97136341 Score: 74
Period size: 28 Copynumber: 3.2 Consensus size: 28
97136247 AACAATCTGG
*
97136257 TACACGTAGTAGCCTGCACTTAGTACTA
1 TACACGTAGTAGCCTGCACTTAGTCCTA
* * * **
97136285 CACACAT-G-A-CCTG-AC-CA-TCAGA
1 TACACGTAGTAGCCTGCACTTAGTCCTA
97136307 TACACGTAGTAGCCTGCACTTAGTCCTA
1 TACACGTAGTAGCCTGCACTTAGTCCTA
97136335 TACACGT
1 TACACGT
97136342 GACCGAAGCT
Statistics
Matches: 40, Mismatches: 11, Indels: 12
0.63 0.17 0.19
Matches are distributed among these distances:
22 7 0.17
23 2 0.05
24 3 0.08
25 8 0.20
26 3 0.08
27 2 0.05
28 15 0.38
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (28 bp):
TACACGTAGTAGCCTGCACTTAGTCCTA
Found at i:97136379 original size:101 final size:99
Alignment explanation
Indices: 97136213--97136446 Score: 283
Period size: 101 Copynumber: 2.3 Consensus size: 99
97136203 TCGATACGCA
* * * * *
97136213 TAGTAGCCTGCACTTAGTACTACACATGCGAGCTAACAATCTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCGAACAATCGGGTACACGTAGTAGCCTGCACTT
* *
97136278 AGTACTACACACATG-ACCTGACCATC-AGATACACG
66 AGTAC--CACACATGAACCTAACAATCTAG-TACACG
* * * *
97136313 TAGTAGCCTGCACTTAGTCCTATACACGTGACCGAAGCTATCGGGTACACTTAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCGAA-CAATCGGGTACACGTAGTAGCCTGCACT
* *
97136378 TAGTACGACACATGCAACCTAACAATCTAGTACATG
65 TAGTACCACACATG-AACCTAACAATCTAGTACACG
*
97136414 TAGTAGACTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
97136447 TAAAACCATT
Statistics
Matches: 114, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
99 7 0.06
100 30 0.26
101 75 0.66
102 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.24
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCGAACAATCGGGTACACGTAGTAGCCTGCACTT
AGTACCACACATGAACCTAACAATCTAGTACACG
Found at i:97136490 original size:151 final size:150
Alignment explanation
Indices: 97136213--97136490 Score: 369
Period size: 151 Copynumber: 1.8 Consensus size: 150
97136203 TCGATACGCA
* * * * *
97136213 TAGTAGCCTGCACTTAGTACTACACATGCGAGCTAACAATCTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACGACACATGCAACCTAACAATCTAGTACACGTAGTAGACTGCACTT
* * * * * *
97136278 AGTACTACACACATGACCTGACCATCAGATACACGTAGTAGCCTGCACTTAGTCCTATACACGTG
66 AGTACTACACACATGACCTAACCATCAGAAACACATAGTAGCCTACACATAGTAC-ATACACGTG
97136343 ACCGAAGCTATCGGGTACACT
130 ACCGAAGCTATCGGGTACACT
*
97136364 TAGTAGCCTGCACTTAGTACGACACATGCAACCTAACAATCTAGTACATGTAGTAGACTGCACTT
1 TAGTAGCCTGCACTTAGTACGACACATGCAACCTAACAATCTAGTACACGTAGTAGACTGCACTT
* *** *
97136429 AGTACTACACACGTGACCTAAAACCATTTTAAACACATTGTAGCCTACACATAGTAC-TACAC
66 AGTACTACACACATGACCT--AACCATCAGAAACACATAGTAGCCTACACATAGTACATACAC
97136491 ATGTGTTCTC
Statistics
Matches: 108, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
151 82 0.76
153 26 0.24
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (150 bp):
TAGTAGCCTGCACTTAGTACGACACATGCAACCTAACAATCTAGTACACGTAGTAGACTGCACTT
AGTACTACACACATGACCTAACCATCAGAAACACATAGTAGCCTACACATAGTACATACACGTGA
CCGAAGCTATCGGGTACACT
Found at i:97148148 original size:33 final size:33
Alignment explanation
Indices: 97148106--97148172 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
97148096 ATGCTCCTCA
*
97148106 TTCCTGCTATCAATCTCATCAAAATAAGGTTTT
1 TTCCTGCTATCAATCTCAACAAAATAAGGTTTT
*
97148139 TTCCTGCTATCAATCTCAACAAAATAGGGTTTT
1 TTCCTGCTATCAATCTCAACAAAATAAGGTTTT
97148172 T
1 T
97148173 ATCGGGTGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.30, C:0.21, G:0.10, T:0.39
Consensus pattern (33 bp):
TTCCTGCTATCAATCTCAACAAAATAAGGTTTT
Found at i:97151960 original size:13 final size:13
Alignment explanation
Indices: 97151942--97151966 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97151932 CTCAGTAGAG
97151942 ACACGCCCGTGTA
1 ACACGCCCGTGTA
97151955 ACACGCCCGTGT
1 ACACGCCCGTGT
97151967 TCAATTACTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.40, G:0.24, T:0.16
Consensus pattern (13 bp):
ACACGCCCGTGTA
Found at i:97157857 original size:27 final size:27
Alignment explanation
Indices: 97157834--97158120 Score: 342
Period size: 27 Copynumber: 10.6 Consensus size: 27
97157824 TTAGTTTACC
*
97157834 AAATTACCAATATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* ** **
97157861 AAATTACAAAAATACCTTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
97157888 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
97157915 AAATTACTAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
**
97157942 AAATTACCAAAATACCCCTATTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
97157969 AAATTACTAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
97157996 TAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
97158023 AAATTACCAAAATACCCATGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
97158050 AAATTATCAAAATACCTCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
97158077 AAATTACCAAAATACCCCTGATTTATG
1 AAATTACCAAAATACCCCTGGTTTGTA
97158104 AAATTA-CAGAAATACCC
1 AAATTACCA-AAATACCC
97158121 TCGACCTAAA
Statistics
Matches: 218, Mismatches: 41, Indels: 2
0.84 0.16 0.01
Matches are distributed among these distances:
26 2 0.01
27 216 0.99
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:97157903 original size:54 final size:54
Alignment explanation
Indices: 97157827--97158120 Score: 401
Period size: 54 Copynumber: 5.4 Consensus size: 54
97157817 GAATACTTTA
* * * *
97157827 GTTTACCAAATTACCAATATACCCCTGGTTTGTAAAATTACAAAAATACCTTTG
1 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTG
*
97157881 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTG
1 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTG
** *
97157935 GTTTACAAAATTACCAAAATACCCCTATTTTGTAAAATTACTAAAATACCCTTG
1 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTG
* * *
97157989 GTTTACATAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCATG
1 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTG
** * * *
97158043 GTTTGTAAAATTATCAAAATACCTCTGGTTTGTAAAATTACCAAAATACCCCTG
1 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTG
* **
97158097 ATTTATGAAATTA-CAGAAATACCC
1 GTTTACAAAATTACCA-AAATACCC
97158121 TCGACCTAAA
Statistics
Matches: 216, Mismatches: 23, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
53 2 0.01
54 214 0.99
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (54 bp):
GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTG
Found at i:97158134 original size:81 final size:81
Alignment explanation
Indices: 97157834--97158227 Score: 323
Period size: 81 Copynumber: 4.9 Consensus size: 81
97157824 TTAGTTTACC
* * * * * * * *
97157834 AAATTACCAATATACCCCTGGTTTGTAAAATTACAAAAATACCTTTGGTTTACAAAATTACCAAA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTCGATTTATAAAATTATCAAA
*
97157899 ATACCCCTGGTTTGTA
66 ATACCTCTGGTTTGTA
* * * * *
97157915 AAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCC-CTATTTTGTAAAATTA-CTA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTCGA-TTTATAAAATTATC-A
**
97157978 AAATACC-CTTGGTTTACA
64 AAATACCTC-TGGTTTGTA
* * * * *
97157996 TAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCAT-GGTTTGTAAAATTATCAA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCC-TCGATTTATAAAATTATCAA
97158060 AATACCTCTGGTTTGTA
65 AATACCTCTGGTTTGTA
* * ** * *
97158077 AAATTACCAAAATACCCCTGATTTATGAAATTA-CAGAAATACCCTCGACCTAAAAAATTATTAA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACCA-AAATACCCTCGATTTATAAAATTATCAA
**
97158141 AATACCATC-GACTTGTA
65 AATACC-TCTGGTTTGTA
* * * * * **** * * *
97158158 AAATTACCAAAGTACCCCTGATTTACAGAATTATCGTTTTACCCTCGATTTACAAAATTACCGAA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTCGATTTATAAAATTATCAAA
97158223 ATACC
66 ATACC
97158228 CCTATAGGGT
Statistics
Matches: 253, Mismatches: 49, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
80 5 0.02
81 243 0.96
82 5 0.02
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTCGATTTATAAAATTATCAAA
ATACCTCTGGTTTGTA
Found at i:97158227 original size:27 final size:27
Alignment explanation
Indices: 97157834--97158228 Score: 230
Period size: 27 Copynumber: 14.6 Consensus size: 27
97157824 TTAGTTTACC
* * *
97157834 AAATTACCAATATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTATA
* * * * *
97157861 AAATTACAAAAATACCTTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* *
97157888 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTATA
* * * *
97157915 AAATTACTAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* *
97157942 AAATTACCAAAATACCC-CTATTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTATA
* * * *
97157969 AAATTACTAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* * * *
97157996 TAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* *
97158023 AAATTACCAAAATACCCAT-GGTTTGTA
1 AAATTACCAAAATACCC-TCGATTTATA
* * *
97158050 AAATTATCAAAATA-CCTCTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTATA
*
97158077 AAATTACCAAAATACCC-CTGATTTATG
1 AAATTACCAAAATACCCTC-GATTTATA
** *
97158104 AAATTA-CAGAAATACCCTCGACCTAAA
1 AAATTACCA-AAATACCCTCGATTTATA
** * * *
97158131 AAATTATTAAAATACCATCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* *
97158158 AAATTACCAAAGTACCC-CTGATTTACA
1 AAATTACCAAAATACCCTC-GATTTATA
* * **** *
97158185 GAATTATCGTTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
*
97158212 AAATTACCGAAATACCC
1 AAATTACCAAAATACCC
97158229 CTATAGGGTA
Statistics
Matches: 290, Mismatches: 64, Indels: 28
0.76 0.17 0.07
Matches are distributed among these distances:
25 1 0.00
26 5 0.02
27 278 0.96
28 6 0.02
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTATA
Found at i:97158246 original size:27 final size:27
Alignment explanation
Indices: 97158213--97158389 Score: 239
Period size: 27 Copynumber: 6.6 Consensus size: 27
97158203 CGATTTACAA
*
97158213 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
97158240 AAATACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
97158267 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * **
97158294 AATTATTGCAATACAACTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
97158321 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
97158348 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
97158375 AATTACC-AAGATACC
1 AATTACCGAA-ATACC
97158390 TTGTGGGGTA
Statistics
Matches: 130, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 2 0.02
27 128 0.98
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:97158886 original size:22 final size:22
Alignment explanation
Indices: 97158834--97158898 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
97158824 TTAAAGCCTT
* *
97158834 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
97158856 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
97158878 CTGATTATGGC-CGTGTGCCAA
1 CTGATTATGGCTC-TGTGCCAA
97158899 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
21 2 0.06
22 33 0.92
23 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:97159087 original size:27 final size:27
Alignment explanation
Indices: 97159057--97159158 Score: 125
Period size: 27 Copynumber: 3.8 Consensus size: 27
97159047 ATTCTGTTAA
*
97159057 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTTTGCCACAATATCTGTTTCTG
*
97159084 GTGGCTATGCCACAAATATCTGTTT-TG
1 GTGGCTTTGCCAC-AATATCTGTTTCTG
* * *
97159111 GTGGCTCTGCCACAATATCTGTATCTA
1 GTGGCTTTGCCACAATATCTGTTTCTG
* *
97159138 GTGACTTTGTCACAATATCTG
1 GTGGCTTTGCCACAATATCTG
97159159 ATAACTGAGC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 10 0.15
27 45 0.69
28 10 0.15
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.38
Consensus pattern (27 bp):
GTGGCTTTGCCACAATATCTGTTTCTG
Found at i:97159333 original size:6 final size:6
Alignment explanation
Indices: 97159295--97159414 Score: 68
Period size: 6 Copynumber: 19.3 Consensus size: 6
97159285 TTGCATTCAC
* * *
97159295 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTC-G
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
97159344 GTTACCTG ATACTG ATTCTA ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
97159395 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
97159415 AATGTTTCTT
Statistics
Matches: 86, Mismatches: 16, Indels: 24
0.68 0.13 0.19
Matches are distributed among these distances:
5 7 0.08
6 63 0.73
7 12 0.14
8 4 0.05
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:97159341 original size:31 final size:31
Alignment explanation
Indices: 97159295--97159430 Score: 150
Period size: 31 Copynumber: 4.4 Consensus size: 31
97159285 TTGCATTCAC
*
97159295 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCTGATACTG
* *
97159327 ATTCTGATTTTGATTCGGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* * * *
97159358 ATTCTAATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
*
97159389 ATTCTGATTCTGATTCTAGTT--CTGATAATG
1 ATTCTGATTCTGATTCT-GTTACCTGATACTG
* *
97159419 TTTCTTATTCTG
1 ATTCTGATTCTG
97159431 TAATGGGTTA
Statistics
Matches: 89, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
30 16 0.18
31 64 0.72
32 9 0.10
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:97161758 original size:20 final size:20
Alignment explanation
Indices: 97161733--97161790 Score: 98
Period size: 20 Copynumber: 2.9 Consensus size: 20
97161723 CTAGAAAATA
97161733 TGTGATCTGAGCTCATGAGT
1 TGTGATCTGAGCTCATGAGT
97161753 TGTGATCTGAGCTCATGAGT
1 TGTGATCTGAGCTCATGAGT
* *
97161773 TGTGGTCTGAGTTCATGA
1 TGTGATCTGAGCTCATGA
97161791 TATAGGTGAC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.19, C:0.14, G:0.31, T:0.36
Consensus pattern (20 bp):
TGTGATCTGAGCTCATGAGT
Found at i:97162073 original size:48 final size:50
Alignment explanation
Indices: 97161950--97162088 Score: 178
Period size: 50 Copynumber: 2.8 Consensus size: 50
97161940 ATGAGTAATG
* *
97161950 AGAT-CCATGTAAGACCATGTTTGGGACATGGAATTCGCAT-GGATATGT
1 AGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGGATATGT
* *
97161998 GAGATCCCATGTAGGACCATGTCTGGGACATGGCATTGGCATCGG-TATGT
1 -AGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGGATATGT
* * *
97162048 -GATCCCATGTAAGACCATATTTGGGATATGGCCTTGGCATC
1 AGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATC
97162089 TTATTACATG
Statistics
Matches: 79, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
48 36 0.46
49 4 0.05
50 37 0.47
51 2 0.03
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (50 bp):
AGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGGATATGT
Found at i:97167394 original size:27 final size:26
Alignment explanation
Indices: 97167364--97167540 Score: 167
Period size: 27 Copynumber: 6.5 Consensus size: 26
97167354 AAATTGTGCG
*
97167364 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTA
* *
97167391 GCACTAAGTGTGCGAAATGAATATG-A
1 GCACTAAGTGTGCG-ATTGACTATGTA
* **
97167417 TGCACTAAGTGTGCGAATTGACCATGCG
1 -GCACTAAGTGTGCG-ATTGACTATGTA
97167445 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-T-TGACTATGTA
* * *
97167473 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-TTGACTATGTA
* *
97167500 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTA
*
97167527 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
97167541 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 19, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 25 0.20
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTA
Found at i:97167483 original size:82 final size:81
Alignment explanation
Indices: 97167360--97167519 Score: 232
Period size: 82 Copynumber: 2.0 Consensus size: 81
97167350 GATTAAATTG
* * *
97167360 TGCGGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTA
1 TGCGGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTA
97167424 AGTGTGCGAATTGACCA
65 AGTGTGCGAATTGACCA
** *
97167441 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTA
1 TGCGGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTA
*
97167506 AGTGTGCGAGTTGA
65 AGTGTGCGAATTGA
97167520 TTATATAGCA
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
81 22 0.31
82 48 0.69
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
TGCGGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAA
GTGTGCGAATTGACCA
Found at i:97167531 original size:82 final size:81
Alignment explanation
Indices: 97167364--97167540 Score: 212
Period size: 82 Copynumber: 2.2 Consensus size: 81
97167354 AAATTGTGCG
* * *
97167364 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
* *
97167429 GCGAATTGACCATGCG
66 GCGAATTGACCATACA
** *
97167445 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAGT
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
* ** *
97167509 GTGCGAGTTGATTATATA
64 GTGCGAATTGACCATACA
*
97167527 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
97167541 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.22
82 63 0.78
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATACA
Found at i:97175513 original size:27 final size:26
Alignment explanation
Indices: 97175483--97175659 Score: 158
Period size: 27 Copynumber: 6.5 Consensus size: 26
97175473 AAATTGTGCG
*
97175483 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTA
* * *
97175510 GCACTAAGTGTGTGAAATGAATATG-A
1 GCACTAAGTGTGCG-ATTGACTATGTA
* **
97175536 TGCACTAAGTGTGCGAATTGACCATGCG
1 -GCACTAAGTGTGCG-ATTGACTATGTA
97175564 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-T-TGACTATGTA
* * *
97175592 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-TTGACTATGTA
* *
97175619 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTA
*
97175646 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
97175660 GGCTCAATAT
Statistics
Matches: 124, Mismatches: 21, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
26 1 0.01
27 98 0.79
28 25 0.20
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTA
Found at i:97175602 original size:82 final size:81
Alignment explanation
Indices: 97175479--97175638 Score: 223
Period size: 82 Copynumber: 2.0 Consensus size: 81
97175469 GATTAAATTG
* * * *
97175479 TGCGGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGTGAAATGAATATGAT-GCACTA
1 TGCGGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTA
97175543 AGTGTGCGAATTGACCA
65 AGTGTGCGAATTGACCA
** *
97175560 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTA
1 TGCGGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTA
*
97175625 AGTGTGCGAGTTGA
65 AGTGTGCGAATTGA
97175639 TTATATAGCA
Statistics
Matches: 69, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
81 22 0.32
82 47 0.68
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (81 bp):
TGCGGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAA
GTGTGCGAATTGACCA
Found at i:97175650 original size:82 final size:81
Alignment explanation
Indices: 97175483--97175659 Score: 203
Period size: 82 Copynumber: 2.2 Consensus size: 81
97175473 AAATTGTGCG
* * * *
97175483 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGTGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
* *
97175548 GCGAATTGACCATGCG
66 GCGAATTGACCATACA
** *
97175564 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAGT
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
* ** *
97175628 GTGCGAGTTGATTATATA
64 GTGCGAATTGACCATACA
*
97175646 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
97175660 GGCTCAATAT
Statistics
Matches: 80, Mismatches: 14, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
81 18 0.22
82 62 0.77
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATACA
Found at i:97191575 original size:45 final size:46
Alignment explanation
Indices: 97191496--97191620 Score: 128
Period size: 46 Copynumber: 2.7 Consensus size: 46
97191486 CGTAAGGTGT
* *
97191496 CGATGCAATGTCCCAGACATGGTCTTACGCTAGCTCAAATCTC-AAGC
1 CGATGC-ATGTCCCTGACAT-GTCTTACACTAGCTCAAATCTCGAAGC
* * * ** *
97191543 TGATGCATGTCCCTGACATGTCTTACCCTAGCTTACGTCTCGAGGC
1 CGATGCATGTCCCTGACATGTCTTACACTAGCTCAAATCTCGAAGC
*
97191589 CGATGCATGT-CCTAAACATGTCTTACACTAGC
1 CGATGCATGTCCCT-GACATGTCTTACACTAGC
97191621 ACTCGTCCCG
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
45 21 0.32
46 40 0.61
47 5 0.08
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (46 bp):
CGATGCATGTCCCTGACATGTCTTACACTAGCTCAAATCTCGAAGC
Found at i:97199185 original size:15 final size:15
Alignment explanation
Indices: 97199161--97199204 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
97199151 TATGATATCG
97199161 TATCTTGGATTTCTC
1 TATCTTGGATTTCTC
* *
97199176 TATTTTGGATTACTC
1 TATCTTGGATTTCTC
*
97199191 TATCTTGGTTTTCT
1 TATCTTGGATTTCT
97199205 TGTCATCTTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.14, C:0.16, G:0.14, T:0.57
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:97202291 original size:39 final size:40
Alignment explanation
Indices: 97202207--97202291 Score: 100
Period size: 40 Copynumber: 2.1 Consensus size: 40
97202197 ACTTAATTCA
* * * *
97202207 CCAGCATTAAGCCTGCGGGACTTTAAACCCGGATACAATC
1 CCAGCATGAAGCCAGCGGGACTCTAAACCCGGACACAATC
* *
97202247 CCAGCATGAAGCCAGCGGGTCTCT-AACCCGGACGCAATC
1 CCAGCATGAAGCCAGCGGGACTCTAAACCCGGACACAATC
*
97202286 TCAGCA
1 CCAGCA
97202292 CAATTCATTT
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 18 0.47
40 20 0.53
ACGTcount: A:0.28, C:0.33, G:0.22, T:0.16
Consensus pattern (40 bp):
CCAGCATGAAGCCAGCGGGACTCTAAACCCGGACACAATC
Found at i:97202416 original size:45 final size:46
Alignment explanation
Indices: 97202362--97202470 Score: 150
Period size: 47 Copynumber: 2.3 Consensus size: 46
97202352 TGCACACTTT
* *
97202362 TCACAATTGGTCATTCGGCCTTATCACATAT-TCACTTACACATAT-A
1 TCAC-ATTGGCCATTCGGCCTTATCACATATAACACTTACACAT-TCA
*
97202408 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATA-ACACTTACACATTCA
97202455 TCACATTGGCCATTCG
1 TCACATTGGCCATTCG
97202471 ATCTTAAGCT
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
45 25 0.44
46 5 0.09
47 27 0.47
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (46 bp):
TCACATTGGCCATTCGGCCTTATCACATATAACACTTACACATTCA
Found at i:97204995 original size:22 final size:20
Alignment explanation
Indices: 97204955--97204995 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
97204945 AGTCCTATTA
*
97204955 ACTAAATTCACATGCAATTG
1 ACTAAATTCACATGAAATTG
97204975 ACTAAATTCAAACATGAAATT
1 ACTAAATTC--ACATGAAATT
97204996 TTCACACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.29
Consensus pattern (20 bp):
ACTAAATTCACATGAAATTG
Found at i:97205482 original size:22 final size:23
Alignment explanation
Indices: 97205454--97205516 Score: 76
Period size: 22 Copynumber: 2.8 Consensus size: 23
97205444 GCAAATACAT
*
97205454 TTGGCACACAGCCATAATCT-GG
1 TTGGCACAAAGCCATAATCTAGG
* *
97205476 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAATCTAGG
*
97205498 TTGGCGCAAAGCCATAATC
1 TTGGCACAAAGCCATAATC
97205517 AAAACAATTG
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
21 3 0.09
22 29 0.85
23 2 0.06
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.22
Consensus pattern (23 bp):
TTGGCACAAAGCCATAATCTAGG
Found at i:97205722 original size:41 final size:41
Alignment explanation
Indices: 97205660--97205782 Score: 176
Period size: 41 Copynumber: 3.0 Consensus size: 41
97205650 TAAAAGCCAC
* **
97205660 CGGTGGATCCACGAG-CATCAAGCAACCATAAGATCCTTAAT
1 CGGTGGATCCAC-AGTCGTCAAGCAACCATGCGATCCTTAAT
*
97205701 CGGTGGATCCACAGTCGTCAAGCAACCATGCGATCCTCAAT
1 CGGTGGATCCACAGTCGTCAAGCAACCATGCGATCCTTAAT
* *
97205742 CGGCGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAAT
1 CGGTGGATCCACAGTCGTCAAGCAACCATGCGATCCTTAAT
97205783 TTCTCCCTCC
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
40 2 0.03
41 72 0.97
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (41 bp):
CGGTGGATCCACAGTCGTCAAGCAACCATGCGATCCTTAAT
Found at i:97206163 original size:54 final size:54
Alignment explanation
Indices: 97206003--97206345 Score: 255
Period size: 54 Copynumber: 6.3 Consensus size: 54
97205993 CACCCTACAA
* * * * ** *
97206003 GGGTGTTTTGGTAAATTTACAAACCAATGGTATTTCGATAATTTTGCAAATCAA
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGATAATTTCACAAATCAG
* * ** ** * * ***
97206057 TGGTACTTCAGTAATTTTTTAAAGTTAAAGGTATTTCTG-TAATTTTGTAAATCAG
1 GGGTATTTTGGTAATTTTACAAA-TCAAGGGTATTTC-GATAATTTCACAAATCAG
* * *
97206112 GGGTATTTTTGTAATTTTCCAAATCAAGGGTATTTCGATAATTTCCCAAATCAG
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGATAATTTCACAAATCAG
* * * *
97206166 AGGTATTTTGGTAATTTTACAAATCAAGGGTAATTT-GGTAATTTTA-AAAGT-TG
1 GGGTATTTTGGTAATTTTACAAATCAAGGGT-ATTTCGATAATTTCACAAA-TCAG
* * ** * *
97206219 AGGGTATTTCGGTAATTTTATAGGTCGAGGGTATTTCGATAATTTCACAAATTAG
1 -GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGATAATTTCACAAATCAG
* * * * * * *
97206274 GAGTATTTTGGTAATTTCATAAATCAGGGGTATTTTGGTAATTTTACAAA-CTAG
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGATAATTTCACAAATC-AG
97206328 GGGTATTTTGGTAATTTT
1 GGGTATTTTGGTAATTTT
97206346 GCTAATCGAG
Statistics
Matches: 226, Mismatches: 53, Indels: 20
0.76 0.18 0.07
Matches are distributed among these distances:
53 9 0.04
54 167 0.74
55 49 0.22
56 1 0.00
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGATAATTTCACAAATCAG
Found at i:97206207 original size:81 final size:81
Alignment explanation
Indices: 97206008--97206372 Score: 258
Period size: 81 Copynumber: 4.5 Consensus size: 81
97205998 TACAAGGGTG
* * * * * * * *
97206008 TTTTGGTAAATTTACAAACCAATGGTATTTCGATAATTTTGCAAATCAATGGTACTTC-AGTAAT
1 TTTTGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTCCAAATCAAGGGTATTTCGA-TAAT
** * *
97206072 TTTTTAAAGTTAAAGGTA
65 TTTACAAA-TCAGAGGTA
** * *
97206090 TTTCT-GTAATTTTGTAAATCAGGGGTATTTTTGTAATTTTCCAAATCAAGGGTATTTCGATAAT
1 TTT-TGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTCCAAATCAAGGGTATTTCGATAAT
**
97206154 TTCCCAAATCAGAGGTA
65 TTTACAAATCAGAGGTA
* * ** *
97206171 TTTTGGTAATTTTACAAATCAAGGGTAATTTGGTAATTTT-AAAAGTTGAGGGTATTTCGGTAAT
1 TTTTGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTCCAAA-TCAAGGGTATTTCGATAAT
* **
97206235 TTTATAGGTC-GAGGGTA
65 TTTACAAATCAGA-GGTA
* * * * * * * *
97206252 TTTCGATAATTTCACAAAT-TAGGAGTATTTTGGTAA-TTTCATAAATCAGGGGTATTTTGGTAA
1 TTTTGGTAATTTTACAAATCAAGG-GTATTTTGGTAATTTTC-CAAATCAAGGGTATTTCGATAA
*
97206315 TTTTACAAA-CTAGGGGTA
64 TTTTACAAATC-AGAGGTA
* * * *
97206333 TTTTGGTAATTTTGCTAATCGAGTGTATTTTGGTAATTTT
1 TTTTGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTT
97206373 GTAAACCAAA
Statistics
Matches: 219, Mismatches: 52, Indels: 24
0.74 0.18 0.08
Matches are distributed among these distances:
80 13 0.06
81 142 0.65
82 62 0.28
83 2 0.01
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.42
Consensus pattern (81 bp):
TTTTGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTCCAAATCAAGGGTATTTCGATAATT
TTACAAATCAGAGGTA
Found at i:97206355 original size:108 final size:106
Alignment explanation
Indices: 97206110--97206371 Score: 310
Period size: 108 Copynumber: 2.4 Consensus size: 106
97206100 TTTGTAAATC
* * * *
97206110 AGGGGTATTTTTGTAATTTTCCAAATCAAGGGTATTTCGATAATTTCCCAAATCAGAGGTATTTT
1 AGGGGTATTTTGGTAATTTT-CTAATCGAGGGTATTTCGATAATTTCACAAATCAGAGGTATTTT
* *
97206175 GGTAATTTTACAAATCAAGGGTAATTTGGTAATTTTAAAAGT
65 GGTAATTTCACAAATCAAGGGTAATTTGGTAATTTTAAAACT
* * * * *
97206217 TGAGGGTATTTCGGTAATTTTATAGGTCGAGGGTATTTCGATAATTTCACAAATTAG-GAGTATT
1 AG-GGGTATTTTGGTAATTTTCTA-ATCGAGGGTATTTCGATAATTTCACAAATCAGAG-GTATT
* * *
97206281 TTGGTAATTTCATAAATCAGGGGTATTTTGGTAATTTTACAAACT
63 TTGGTAATTTCACAAATCAAGGGTAATTTGGTAATTTTA-AAACT
* * *
97206326 AGGGGTATTTTGGTAATTTTGCTAATCGAGTGTATTTTGGTAATTT
1 AGGGGTATTTTGGTAATTTT-CTAATCGAGGGTATTTCGATAATTT
97206372 TGTAAACCAA
Statistics
Matches: 129, Mismatches: 21, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
107 3 0.02
108 119 0.92
109 7 0.05
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.41
Consensus pattern (106 bp):
AGGGGTATTTTGGTAATTTTCTAATCGAGGGTATTTCGATAATTTCACAAATCAGAGGTATTTTG
GTAATTTCACAAATCAAGGGTAATTTGGTAATTTTAAAACT
Found at i:97206386 original size:27 final size:27
Alignment explanation
Indices: 97206000--97206414 Score: 142
Period size: 27 Copynumber: 15.4 Consensus size: 27
97205990 TTTCACCCTA
* * **
97206000 CAAGGGTGTTTTGGTAAATTTACAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* * * * *
97206027 CAATGGTATTTCGATAATTTTGCAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* * ** * *
97206054 CAATGGTACTTCAGTAATTTTTTAAAGT
1 CAAGGGTATTTTGGTAATTTTGTAAA-C
* * *
97206082 TAAAGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTGTAAAC
* * ** *
97206109 CAGGGGTATTTTTGTAATTTTCCAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* * *** *
97206136 CAAGGGTATTTCGATAATTTCCCAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAC
** *
97206163 C-AGAGGTATTTTGGTAATTTTACAAAT
1 CAAG-GGTATTTTGGTAATTTTGTAAAC
* * *
97206190 CAAGGGTAATTTGGTAATTTT-AAAAGT
1 CAAGGGTATTTTGGTAATTTTGTAAA-C
** * * ***
97206217 TGAGGGTATTTCGGTAATTTTATAGGT
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* * * ***
97206244 CGAGGGTATTTCGATAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTGTAAAC
** ** *
97206270 TTAGGAGTATTTTGGTAATTTCATAAAT
1 CAAGG-GTATTTTGGTAATTTTGTAAAC
* **
97206298 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* * *
97206325 TAGGGGTATTTTGGTAATTTTGCT-AAT
1 CAAGGGTATTTTGGTAATTTTG-TAAAC
* *
97206352 CGAGTGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
** **
97206379 CAAATGTA-TTCAGTAATTTTGT-AAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
97206404 CAAGGGTATTT
1 CAAGGGTATTT
97206415 CAGTAATTCT
Statistics
Matches: 304, Mismatches: 72, Indels: 25
0.76 0.18 0.06
Matches are distributed among these distances:
25 9 0.03
26 24 0.08
27 245 0.81
28 26 0.09
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTGTAAAC
Found at i:97206412 original size:25 final size:27
Alignment explanation
Indices: 97206365--97206422 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 27
97206355 GTGTATTTTG
*
97206365 GTAATTTTGTAAACCAAATGTA-TTCA
1 GTAATTTTGTAAACCAAAGGTATTTCA
*
97206391 GTAATTTTGT-AACCAAGGGTATTTCA
1 GTAATTTTGTAAACCAAAGGTATTTCA
97206417 GTAATT
1 GTAATT
97206423 CTACCCTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 9 0.31
26 20 0.69
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTGTAAACCAAAGGTATTTCA
Found at i:97206446 original size:27 final size:27
Alignment explanation
Indices: 97206408--97206515 Score: 137
Period size: 27 Copynumber: 4.0 Consensus size: 27
97206398 TGTAACCAAG
97206408 GGTATTTCAGTAATTCTACCCTATAGA
1 GGTATTTCAGTAATTCTACCCTATAGA
* * *
97206435 GGTATTTTAGTAATTCTATCCTACA-A
1 GGTATTTCAGTAATTCTACCCTATAGA
* *
97206461 GGGCATTTCAGTAATTCTACCCTATAGG
1 -GGTATTTCAGTAATTCTACCCTATAGA
* *
97206489 GGTATTTCAGTAATACTAGCCTATAGA
1 GGTATTTCAGTAATTCTACCCTATAGA
97206516 TATGAGATTC
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 1 0.01
27 66 0.99
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.36
Consensus pattern (27 bp):
GGTATTTCAGTAATTCTACCCTATAGA
Found at i:97206469 original size:54 final size:54
Alignment explanation
Indices: 97206404--97206511 Score: 171
Period size: 54 Copynumber: 2.0 Consensus size: 54
97206394 ATTTTGTAAC
* * * *
97206404 CAAGGGTATTTCAGTAATTCTACCCTATAGAGGTATTTTAGTAATTCTATCCTA
1 CAAGGGCATTTCAGTAATTCTACCCTATAGAGGTATTTCAGTAATACTAGCCTA
*
97206458 CAAGGGCATTTCAGTAATTCTACCCTATAGGGGTATTTCAGTAATACTAGCCTA
1 CAAGGGCATTTCAGTAATTCTACCCTATAGAGGTATTTCAGTAATACTAGCCTA
97206512 TAGATATGAG
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.35
Consensus pattern (54 bp):
CAAGGGCATTTCAGTAATTCTACCCTATAGAGGTATTTCAGTAATACTAGCCTA
Found at i:97221102 original size:6 final size:6
Alignment explanation
Indices: 97221083--97221130 Score: 55
Period size: 6 Copynumber: 8.3 Consensus size: 6
97221073 GTTTAAAGAC
* * *
97221083 TTTT-T TTTTA- TTTTAT TTTTAT TTTTAT TTTCAA TTTTAT CTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
97221129 TT
1 TT
97221131 ATCTTCTTTA
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
5 9 0.26
6 26 0.74
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:97221120 original size:18 final size:17
Alignment explanation
Indices: 97221083--97221130 Score: 62
Period size: 18 Copynumber: 2.8 Consensus size: 17
97221073 GTTTAAAGAC
*
97221083 TTTT-TTTTTATTTTAT
1 TTTTATTTTTATTTTAA
97221099 TTTTATTTTTATTTTCAA
1 TTTTATTTTTATTTT-AA
*
97221117 TTTTATCTTTATTT
1 TTTTATTTTTATTT
97221131 ATCTTCTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 4 0.14
17 10 0.36
18 14 0.50
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTATTTTTATTTTAA
Found at i:97221159 original size:25 final size:26
Alignment explanation
Indices: 97221124--97221181 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 26
97221114 CAATTTTATC
97221124 TTTA-TTTATCTTC-TTTAAGTACT-T
1 TTTATTTTATCTTCATTTAA-TACTAT
97221148 TTTATTTTATCTTCATTTAATACTAT
1 TTTATTTTATCTTCATTTAATACTAT
*
97221174 TTCATTTT
1 TTTATTTT
97221182 TAGGTTTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 4 0.13
25 13 0.43
26 13 0.43
ACGTcount: A:0.22, C:0.12, G:0.02, T:0.64
Consensus pattern (26 bp):
TTTATTTTATCTTCATTTAATACTAT
Found at i:97228019 original size:12 final size:12
Alignment explanation
Indices: 97228004--97228068 Score: 51
Period size: 12 Copynumber: 5.4 Consensus size: 12
97227994 CCTTGATTAG
97228004 CTCCTAAATCTT
1 CTCCTAAATCTT
** *
97228016 CTCCTCTATCTG
1 CTCCTAAATCTT
*
97228028 CTCCTAAATCCT
1 CTCCTAAATCTT
* **
97228040 CTCCCT-TATCAG
1 CT-CCTAAATCTT
97228052 CTCCTAAATCTT
1 CTCCTAAATCTT
97228064 CTCCT
1 CTCCT
97228069 GACAGCCTTT
Statistics
Matches: 38, Mismatches: 13, Indels: 4
0.69 0.24 0.07
Matches are distributed among these distances:
11 3 0.08
12 32 0.84
13 3 0.08
ACGTcount: A:0.18, C:0.40, G:0.03, T:0.38
Consensus pattern (12 bp):
CTCCTAAATCTT
Found at i:97228030 original size:24 final size:25
Alignment explanation
Indices: 97228002--97228068 Score: 102
Period size: 24 Copynumber: 2.8 Consensus size: 25
97227992 CTCCTTGATT
97228002 AGCTCCTAAATCTTCTCCTC-TATC
1 AGCTCCTAAATCTTCTCCTCTTATC
* *
97228026 TGCTCCTAAATCCTCTCC-CTTATC
1 AGCTCCTAAATCTTCTCCTCTTATC
97228050 AGCTCCTAAATCTTCTCCT
1 AGCTCCTAAATCTTCTCCT
97228069 GACAGCCTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
23 1 0.03
24 36 0.97
ACGTcount: A:0.19, C:0.39, G:0.04, T:0.37
Consensus pattern (25 bp):
AGCTCCTAAATCTTCTCCTCTTATC
Found at i:97229607 original size:27 final size:27
Alignment explanation
Indices: 97229577--97229754 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
97229567 ATATTGAGTC
* * * *
97229577 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
97229604 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
97229631 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
97229659 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
97229686 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
97229713 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
97229740 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
97229755 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:97229716 original size:82 final size:81
Alignment explanation
Indices: 97229598--97229753 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
97229588 TGCTATATAA
* *
97229598 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
97229663 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
97229680 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
97229744 CACTTAGTGC
65 CACTTAGTGC
97229754 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:97246400 original size:24 final size:24
Alignment explanation
Indices: 97246361--97246466 Score: 140
Period size: 24 Copynumber: 4.4 Consensus size: 24
97246351 GCTGGCCAAT
*
97246361 TCCTGCTCCTTGATCAGCTCCTAAA
1 TCCT-CTCCTTTATCAGCTCCTAAA
* * *
97246386 TCTTTTCCTTTATCAGCTCTTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
97246410 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
97246434 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
97246458 TCTTCTCCT
1 TCCTCTCCT
97246467 GACAGCCTTT
Statistics
Matches: 71, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
24 68 0.96
25 3 0.04
ACGTcount: A:0.19, C:0.37, G:0.06, T:0.39
Consensus pattern (24 bp):
TCCTCTCCTTTATCAGCTCCTAAA
Found at i:97247718 original size:30 final size:30
Alignment explanation
Indices: 97247684--97247741 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
97247674 AATTGATTTT
* *
97247684 CAAGTCTAGGGGTAAAATGGTCATTTTGTG
1 CAAGTCTAAGGGCAAAATGGTCATTTTGTG
97247714 CAAGTCTAAGGGCAAAATGGTCATTTTG
1 CAAGTCTAAGGGCAAAATGGTCATTTTG
97247742 CCCAATTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.29, C:0.12, G:0.28, T:0.31
Consensus pattern (30 bp):
CAAGTCTAAGGGCAAAATGGTCATTTTGTG
Found at i:97250112 original size:15 final size:13
Alignment explanation
Indices: 97250081--97250105 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97250071 TATTTAAAAA
97250081 TTATTTTTTGTGT
1 TTATTTTTTGTGT
97250094 TTATTTTTTGTG
1 TTATTTTTTGTG
97250106 AATTTATATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.16, T:0.76
Consensus pattern (13 bp):
TTATTTTTTGTGT
Found at i:97254647 original size:27 final size:27
Alignment explanation
Indices: 97254617--97254703 Score: 111
Period size: 27 Copynumber: 3.2 Consensus size: 27
97254607 CGATTTACAA
*
97254617 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
97254644 AATTACTAAAATACCTCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
97254671 AATTACTGAGATACCCTTGTTGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
97254698 AATTAC
1 AATTAC
97254704 CATTTTGCCC
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:97255171 original size:25 final size:26
Alignment explanation
Indices: 97255140--97255202 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 26
97255130 TTGTGCCACG
* *
97255140 TATTCTGTTAAGTGGCTTTGCCACAT
1 TATTCTGTTAAGTGGCTCTGCCACAA
*
97255166 TA-TCTGATTCTAGTGGCTCTGCCACAA
1 TATTCTG-TT-AAGTGGCTCTGCCACAA
97255193 TATTCTGTTA
1 TATTCTGTTA
97255203 TTAGCAGCTT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
25 4 0.13
26 4 0.13
27 18 0.60
28 4 0.13
ACGTcount: A:0.21, C:0.21, G:0.17, T:0.41
Consensus pattern (26 bp):
TATTCTGTTAAGTGGCTCTGCCACAA
Found at i:97255384 original size:25 final size:25
Alignment explanation
Indices: 97255319--97255388 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
97255309 TTGCATTCAC
* *
97255319 ATTCTGATTCTGATTATGGTACCTA
1 ATTCTGATTCTGATTCTGATACCTA
*
97255344 ATACTGATTCTGATTCT-ATCACCTA
1 ATTCTGATTCTGATTCTGAT-ACCTA
97255369 ATTCTGATTCTGATTCTGAT
1 ATTCTGATTCTGATTCTGAT
97255389 TCTGATTCTC
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
24 1 0.03
25 36 0.92
26 2 0.05
ACGTcount: A:0.24, C:0.19, G:0.13, T:0.44
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGATACCTA
Found at i:97255409 original size:6 final size:6
Alignment explanation
Indices: 97255319--97255407 Score: 63
Period size: 6 Copynumber: 14.5 Consensus size: 6
97255309 TTGCATTCAC
* * * * * * *
97255319 ATTCTG ATTCTG ATTATG GTACCTA ATACTG ATTCTG ATTCT- ATCACCTA
1 ATTCTG ATTCTG ATTCTG AT-TCTG ATTCTG ATTCTG ATTCTG AT--TCTG
* *
97255369 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTC ATTTTG ATT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT
97255408 TTAGTTCTGA
Statistics
Matches: 64, Mismatches: 15, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
5 2 0.03
6 56 0.88
7 4 0.06
8 2 0.03
ACGTcount: A:0.22, C:0.18, G:0.12, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:97257427 original size:27 final size:25
Alignment explanation
Indices: 97257396--97257494 Score: 74
Period size: 27 Copynumber: 3.7 Consensus size: 25
97257386 TTAGTTTACC
97257396 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGA-TT-TA
* *
97257423 AAATTAC-CAAAGTACCCCCGATTTA
1 AAATTACTGAAA-TACCCTCGATTTA
***
97257448 CAGAATTACTGTTTTACCCTCGATTTACA
1 -A-AATTACTGAAATACCCTCGATTT--A
*
97257477 AAATTATTGAAATACCCT
1 AAATTACTGAAATACCCT
97257495 TGTAAAGTAG
Statistics
Matches: 55, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
25 2 0.04
26 6 0.11
27 45 0.82
28 1 0.02
29 1 0.02
ACGTcount: A:0.36, C:0.23, G:0.09, T:0.31
Consensus pattern (25 bp):
AAATTACTGAAATACCCTCGATTTA
Found at i:97257508 original size:27 final size:27
Alignment explanation
Indices: 97257485--97257619 Score: 171
Period size: 27 Copynumber: 5.0 Consensus size: 27
97257475 CAAAATTATT
** *
97257485 GAAATACCCTTGTAAAGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
97257512 AAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
97257539 GAAATACCCTTGTCGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAATTACC
*
97257566 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* * *
97257593 GAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
97257620 ATTTTGCCCC
Statistics
Matches: 92, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 92 1.00
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
GAAATACCCTTGTAGGGTAGAATTACC
Found at i:97258188 original size:6 final size:6
Alignment explanation
Indices: 97258179--97258303 Score: 78
Period size: 6 Copynumber: 20.3 Consensus size: 6
97258169 TTGCATTCAC
* * * *
97258179 ATTCTT ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
97258229 ATTCTG ATTCTG ATTCTG ATTTTG ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
97258278 ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
97258304 AATTTTTCTT
Statistics
Matches: 91, Mismatches: 17, Indels: 22
0.70 0.13 0.17
Matches are distributed among these distances:
5 5 0.05
6 75 0.82
7 8 0.09
8 3 0.03
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:97258213 original size:25 final size:25
Alignment explanation
Indices: 97258185--97258246 Score: 97
Period size: 25 Copynumber: 2.5 Consensus size: 25
97258175 TCACATTCTT
* *
97258185 ATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGTCACCTAATACTG
*
97258210 ATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGTCACCTAATACTG
97258235 ATTCTGATTCTG
1 ATTCTGATTCTG
97258247 ATTTTGATTC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.19, C:0.21, G:0.15, T:0.45
Consensus pattern (25 bp):
ATTCTGATTCTGTCACCTAATACTG
Found at i:97258242 original size:37 final size:37
Alignment explanation
Indices: 97258201--97258294 Score: 161
Period size: 37 Copynumber: 2.5 Consensus size: 37
97258191 ATTCTGTTAC
* *
97258201 CTGATACTGATTCTGATTCTGTCACCTAATTCTGATT
1 CTGATTCTGATTTTGATTCTGTCACCTAATTCTGATT
97258238 CTGATTCTGATTTTGATTCTGTCACCTAATTCTGATT
1 CTGATTCTGATTTTGATTCTGTCACCTAATTCTGATT
*
97258275 CTGATTCTCATTTTGATTCT
1 CTGATTCTGATTTTGATTCT
97258295 AGTTCTGATA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 54 1.00
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.48
Consensus pattern (37 bp):
CTGATTCTGATTTTGATTCTGTCACCTAATTCTGATT
Found at i:97263999 original size:46 final size:47
Alignment explanation
Indices: 97263852--97264071 Score: 175
Period size: 46 Copynumber: 4.7 Consensus size: 47
97263842 TTATTTGTGT
* * * **
97263852 GCCAGTGTAAGACATGTCTAGGACATGCATCGACCACATTATG-AGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGTAGA
* * * * ** **
97263898 GCCAGTGTGAGATCATTTCTGGGACATGGCATCGACATTGAGA-CAAGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCAAGATGTAGA
*
97263946 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGTA-A
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGTAGA
* * * *
97263992 GCCAGTGTAAGACATGCCTGGGACATGTATCGG-TTACTAGATGT---
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CAAGATGTAGA
*
97264036 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
97264072 ACGTATAGAG
Statistics
Matches: 139, Mismatches: 27, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
44 11 0.08
45 14 0.10
46 66 0.47
47 26 0.19
48 22 0.16
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (47 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGTAGA
Found at i:97264096 original size:48 final size:47
Alignment explanation
Indices: 97263946--97264163 Score: 139
Period size: 46 Copynumber: 4.6 Consensus size: 47
97263936 TGAGACAAGA
*
97263946 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCC-TCA-AGATGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCGT-ATAGAGGT
* * * * *
97263990 AAGCCAGTGTAAGA-CATGCCTGGGACAT-GTATCGG--TTACTAGATGT
1 --GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCGTA-TAGAGGT
97264036 G-TCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATAGAGGT
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CGTATAGAGGT
* ** * *** * * *
97264084 GTTAGTGTAAGACCATGTCTGAAATATGGCATCAGAATGGATATGTGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GGCCGTATA-GAG-GT
*
97264134 GCTAGTGTAAGACCATGTATGGGACATGGC
1 GCTAGTGTAAGACCATGTCTGGGACATGGC
97264164 GTCAGCCTCA
Statistics
Matches: 137, Mismatches: 22, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
44 11 0.08
45 14 0.10
46 42 0.31
48 38 0.28
49 6 0.04
50 26 0.19
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCGTATAGAGGT
Found at i:97264163 original size:50 final size:48
Alignment explanation
Indices: 97264039--97264168 Score: 134
Period size: 48 Copynumber: 2.7 Consensus size: 48
97264029 TAGATGTGTC
* * * * *
97264039 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATAGAGGTGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGAACGGATAGAGGAGCT
** * * *
97264087 AGTGTAAGACCATGTCTGAAATATGGCATCAGAATGGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGAACGGATA-GAG-GAGCT
* *
97264137 AGTGTAAGACCATGTATGGGACATGGCGTCAG
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG
97264169 CCTCAATTTC
Statistics
Matches: 65, Mismatches: 15, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
48 33 0.51
49 2 0.03
50 30 0.46
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGAACGGATAGAGGAGCT
Found at i:97266685 original size:21 final size:21
Alignment explanation
Indices: 97266659--97266699 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
97266649 AAAGAAGAAG
97266659 ACTAAGATAGGGTTAGACACA
1 ACTAAGATAGGGTTAGACACA
*
97266680 ACTAAGATAGGGTTCGACAC
1 ACTAAGATAGGGTTAGACAC
97266700 TCATTTTGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.39, C:0.17, G:0.24, T:0.20
Consensus pattern (21 bp):
ACTAAGATAGGGTTAGACACA
Found at i:97273791 original size:31 final size:31
Alignment explanation
Indices: 97273753--97273831 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
97273743 TTTAACGGTT
97273753 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
97273784 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
97273815 ATTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
97273832 ACTGTAAACG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:97273906 original size:42 final size:42
Alignment explanation
Indices: 97273859--97273946 Score: 131
Period size: 42 Copynumber: 2.1 Consensus size: 42
97273849 CCTTAGGCCT
* ** *
97273859 ATTTCAATATCACATGTAATGTCAATGGATATATGCAAGCCC
1 ATTTCAATATCACATGAAATACCAATGAATATATGCAAGCCC
*
97273901 ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCCC
1 ATTTCAATATCACATGAAATACCAATGAATATATGCAAGCCC
97273943 ATTT
1 ATTT
97273947 GGGGAGACTA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (42 bp):
ATTTCAATATCACATGAAATACCAATGAATATATGCAAGCCC
Found at i:97274137 original size:26 final size:26
Alignment explanation
Indices: 97274091--97274189 Score: 146
Period size: 26 Copynumber: 3.8 Consensus size: 26
97274081 CCTCTTTAAT
*
97274091 AACTGGGGCA-AAGCTCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
97274116 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
97274142 AACTTGGGCATAAGCCCTTTTTCGGTA
1 AACTGGGGCATAAGCCC-TTTTCGGTA
97274169 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
97274190 TCAATAAACT
Statistics
Matches: 65, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
25 10 0.15
26 32 0.49
27 23 0.35
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.29
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:97274163 original size:27 final size:27
Alignment explanation
Indices: 97274091--97274200 Score: 145
Period size: 27 Copynumber: 4.2 Consensus size: 27
97274081 CCTCTTTAAT
* **
97274091 AACTGGGGCA-AAGCTC-TTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTTCAATA
97274116 AACTGGGGCATAAGCCC-TTTTCAATA
1 AACTGGGGCATAAGCCCTTTTTCAATA
* **
97274142 AACTTGGGCATAAGCCCTTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTTCAATA
97274169 AACTGGGGCATAAGCCCTTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTTCAATA
97274196 AACTG
1 AACTG
97274201 TGTAACACCC
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
25 10 0.14
26 28 0.38
27 36 0.49
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (27 bp):
AACTGGGGCATAAGCCCTTTTTCAATA
Found at i:97274165 original size:53 final size:52
Alignment explanation
Indices: 97274091--97274200 Score: 177
Period size: 53 Copynumber: 2.1 Consensus size: 52
97274081 CCTCTTTAAT
*
97274091 AACTGGGGCAAAGCTCTTTTCGGTAAACTGGGGCATAAGCCC-TTTTCAATA
1 AACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTTCAATA
*
97274142 AACTTGGGCATAAGCCCTTTTTCGGTAAACTGGGGCATAAGCCCTTTTTCAATA
1 AACTGGGGCA-AAGCCC-TTTTCGGTAAACTGGGGCATAAGCCCTTTTTCAATA
97274196 AACTG
1 AACTG
97274201 TGTAACACCC
Statistics
Matches: 53, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
51 9 0.17
52 5 0.09
53 26 0.49
54 13 0.25
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (52 bp):
AACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTTCAATA
Found at i:97276516 original size:39 final size:40
Alignment explanation
Indices: 97276473--97276640 Score: 148
Period size: 40 Copynumber: 4.2 Consensus size: 40
97276463 CTCGTTCAAG
* * * *
97276473 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
97276512 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
97276552 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
97276592 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
97276632 TGCCTTCGG
1 TGCCTTCGG
97276641 ATCTTAGTCC
Statistics
Matches: 111, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 26 0.23
40 81 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:97276624 original size:80 final size:80
Alignment explanation
Indices: 97276508--97276693 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 80
97276498 AGTAACTCAT
* * *
97276508 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
97276572 GA-ATTAGT-A-TCTCGC
65 GATA-TAGTCACT-TAGC
**
97276587 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCC
97276651 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
97276668 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
97276694 CAGCATTCAA
Statistics
Matches: 94, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
79 11 0.12
80 72 0.77
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:97276653 original size:40 final size:40
Alignment explanation
Indices: 97276510--97276693 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
97276500 TAACTCATAC
* *
97276510 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
97276550 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
97276590 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
97276630 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
97276671 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
97276694 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
39 8 0.06
40 105 0.85
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:97278855 original size:39 final size:40
Alignment explanation
Indices: 97278713--97278934 Score: 248
Period size: 39 Copynumber: 5.7 Consensus size: 40
97278703 GCTCCTCGTT
* * *
97278713 CAAATGCCTTCGGGACATAACCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
97278753 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
97278793 CAAATGCC-TCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
97278831 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
97278870 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
97278911 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
97278935 CATCATTCAA
Statistics
Matches: 165, Mismatches: 8, Indels: 19
0.86 0.04 0.10
Matches are distributed among these distances:
38 32 0.19
39 63 0.38
40 59 0.36
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:97281423 original size:27 final size:27
Alignment explanation
Indices: 97281362--97281438 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 27
97281352 GGCATATTTG
*
97281362 TCATTTTACCATACAGGGGTATTACGG
1 TCATTTTACCATACAGGGGTATTACGA
* *
97281389 TCACTTTACCCTACAGGGGCT-TTACGA
1 TCATTTTACCATACAGGGG-TATTACGA
* *
97281416 TCTTTTTACC-TATTAGGGGTATT
1 TCATTTTACCATA-CAGGGGTATT
97281439 TTAGTCATTT
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
26 3 0.07
27 37 0.90
28 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.19, T:0.38
Consensus pattern (27 bp):
TCATTTTACCATACAGGGGTATTACGA
Found at i:97281509 original size:27 final size:27
Alignment explanation
Indices: 97281456--97281665 Score: 152
Period size: 27 Copynumber: 7.7 Consensus size: 27
97281446 TTTCATCCTA
* * * * *
97281456 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
* *
97281483 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
* ** *
97281510 CAATGGTATTTCTATAATTTTTAAAAAGC
1 CAAGGGTATTTCGGTAA-TTTTATAAA-C
* * *
97281539 CAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAC
* * *
97281566 C-AGAGGTATTTTGGTAATTTTACAAAT
1 CAAG-GGTATTTCGGTAATTTTATAAAC
** * *
97281593 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
* *
97281620 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
* * *
97281647 TAGGGGTATTTTGGTAATT
1 CAAGGGTATTTCGGTAATT
97281666 NNNNNNNNNN
Statistics
Matches: 148, Mismatches: 31, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
26 2 0.01
27 114 0.77
28 16 0.11
29 16 0.11
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTATAAAC
Found at i:97298784 original size:37 final size:37
Alignment explanation
Indices: 97298713--97298784 Score: 92
Period size: 37 Copynumber: 1.9 Consensus size: 37
97298703 CATTTATATG
* * * *
97298713 TTATTTCAAATATTTTATATGTTGTTTATTTACATCA
1 TTATTGCAAATATTTTATATATTATTTATGTACATCA
97298750 TTATTGCAAATATTTTATATATATATTT-TGTACAT
1 TTATTGCAAATATTTTATATAT-TATTTATGTACAT
97298785 TTCCTAATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
37 26 0.87
38 4 0.13
ACGTcount: A:0.32, C:0.07, G:0.06, T:0.56
Consensus pattern (37 bp):
TTATTGCAAATATTTTATATATTATTTATGTACATCA
Found at i:97303323 original size:59 final size:58
Alignment explanation
Indices: 97303250--97303448 Score: 206
Period size: 59 Copynumber: 3.3 Consensus size: 58
97303240 AATACTAAGA
*
97303250 ATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAATAATTATTTTAAATTAT
1 ATTTTA-TATATTATATATTTTTGTTAAATTATATTTAATAATAATTATTTTAAATTAT
* ** * * * * *
97303309 ATTTTATAGTATTATATA-TTATGATTTTAGTAAATTCATATAAGAA-TA-TTTAATATTAAGA
1 ATTTTATA-TATTATATATTTTTG-TTAAATTATATTTA-ATAATAATTATTTTAA-ATT-A-T
*
97303370 ATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAATAATTATTTTAAATTAT
1 ATTTTA-TATATTATATATTTTTGTTAAATTATATTTAATAATAATTATTTTAAATTAT
97303429 ATTTTATAATATTATATATT
1 ATTTTAT-ATATTATATATT
97303449 ATAATTTTAG
Statistics
Matches: 110, Mismatches: 19, Indels: 22
0.73 0.13 0.15
Matches are distributed among these distances:
58 12 0.11
59 45 0.41
60 14 0.13
61 28 0.25
62 11 0.10
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.55
Consensus pattern (58 bp):
ATTTTATATATTATATATTTTTGTTAAATTATATTTAATAATAATTATTTTAAATTAT
Found at i:97303392 original size:18 final size:17
Alignment explanation
Indices: 97303370--97303504 Score: 95
Period size: 18 Copynumber: 8.0 Consensus size: 17
97303360 AATATTAAGA
97303370 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
97303387 ATTTTTGTTAAA-T-TAT
1 A-TTTTATTAAATTATAT
* *
97303403 A-TTTAAT-AATAAT-T
1 ATTTTATTAAATTATAT
* *
97303417 ATTTTAAATTATATTTTAT
1 ATTTT--ATTAAATTATAT
* *
97303436 AATATTA-TATATTATA-
1 -ATTTTATTAAATTATAT
*
97303452 ATTTTAGTAAATTCATAT
1 ATTTTATTAAATT-ATAT
97303470 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
97303487 ATTGTTATTAAATTATAT
1 ATT-TTATTAAATTATAT
97303505 TTAATAATAA
Statistics
Matches: 92, Mismatches: 13, Indels: 25
0.71 0.10 0.19
Matches are distributed among these distances:
13 2 0.02
14 6 0.07
15 9 0.10
16 9 0.10
17 22 0.24
18 39 0.42
19 1 0.01
20 4 0.04
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.56
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:97303400 original size:120 final size:120
Alignment explanation
Indices: 97303228--97303470 Score: 459
Period size: 120 Copynumber: 2.0 Consensus size: 120
97303218 TGATACAATC
97303228 ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAAT
1 ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAAT
* *
97303293 AATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCAT
66 AATTATTTTAAATTATATTTTATAATATTATATATTATAATTTTAGTAAATTCAT
*
97303348 ATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAAT
1 ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAAT
97303413 AATTATTTTAAATTATATTTTATAATATTATATATTATAATTTTAGTAAATTCAT
66 AATTATTTTAAATTATATTTTATAATATTATATATTATAATTTTAGTAAATTCAT
97303468 ATA
1 ATA
97303471 TTTTATTAAA
Statistics
Matches: 120, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 120 1.00
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (120 bp):
ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAAT
AATTATTTTAAATTATATTTTATAATATTATATATTATAATTTTAGTAAATTCAT
Found at i:97303423 original size:26 final size:25
Alignment explanation
Indices: 97303385--97303443 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 25
97303375 ATTAAATTAT
*
97303385 ATATTTTTGTTAAATTATATTTAATA
1 ATATTATT-TTAAATTATATTTAATA
*
97303411 ATAATTATTTTAAATTATATTTTATA
1 AT-ATTATTTTAAATTATATTTAATA
97303437 ATATTAT
1 ATATTAT
97303444 ATATTATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 5 0.17
26 20 0.67
27 5 0.17
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (25 bp):
ATATTATTTTAAATTATATTTAATA
Found at i:97303442 original size:15 final size:15
Alignment explanation
Indices: 97303398--97303453 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 15
97303388 TTTTTGTTAA
*
97303398 ATTATATTTAATAAT
1 ATTATATTTTATAAT
*
97303413 AAT-TA-TTT-TAA-
1 ATTATATTTTATAAT
97303424 ATTATATTTTATAAT
1 ATTATATTTTATAAT
*
97303439 ATTATATATTATAAT
1 ATTATATTTTATAAT
97303454 TTTAGTAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
11 2 0.06
12 5 0.15
13 5 0.15
14 5 0.15
15 16 0.48
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTATATTTTATAAT
Found at i:97303471 original size:41 final size:41
Alignment explanation
Indices: 97303249--97303489 Score: 136
Period size: 41 Copynumber: 5.9 Consensus size: 41
97303239 TAATACTAAG
* *
97303249 AATTTTATTAAATTATATATTTTTGTTAA-ATTATAT-TTAAT
1 AATTTTAGTAAATTATATA-TTTT-ATAATATTATATATTAAT
** *
97303290 AATAATTATTTTAAA-T-TATATTTTATAGTATTATATATT-AT
1 AAT--TT-TAGTAAATTATATATTTTATAATATTATATATTAAT
* * *
97303331 GATTTTAGTAAATTCATATA----AGAATATT-TAATATTAAG
1 AATTTTAGTAAATT-ATATATTTTATAATATTAT-ATATTAAT
* *
97303369 AATTTTATTAAATTATATATTTTTGTTAA-ATTATAT-TTAAT
1 AATTTTAGTAAATTATATA-TTTT-ATAATATTATATATTAAT
**
97303410 AATAATTATTTTAAA-T-TATATTTTATAATATTATATATT-AT
1 AAT--TT-TAGTAAATTATATATTTTATAATATTATATATTAAT
97303451 AATTTTAGTAAATTCATATATTTTATTAA-ATTATATATT
1 AATTTTAGTAAATT-ATATATTTTA-TAATATTATATATT
97303490 GTTATTAAAT
Statistics
Matches: 156, Mismatches: 18, Indels: 52
0.69 0.08 0.23
Matches are distributed among these distances:
36 1 0.01
37 16 0.10
38 23 0.15
39 6 0.04
40 5 0.03
41 64 0.41
42 20 0.13
43 9 0.06
44 12 0.08
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.54
Consensus pattern (41 bp):
AATTTTAGTAAATTATATATTTTATAATATTATATATTAAT
Found at i:97303691 original size:21 final size:21
Alignment explanation
Indices: 97303667--97303721 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
97303657 TACCACTGTT
97303667 TCTAATCTCACTGCTACAGTA
1 TCTAATCTCACTGCTACAGTA
*
97303688 TCTAATCTCACCGCTACAGTA
1 TCTAATCTCACTGCTACAGTA
*
97303709 CCTAATCTCACTG
1 TCTAATCTCACTG
97303722 TCACCGCTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.27, C:0.33, G:0.09, T:0.31
Consensus pattern (21 bp):
TCTAATCTCACTGCTACAGTA
Found at i:97304972 original size:15 final size:15
Alignment explanation
Indices: 97304940--97304974 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
97304930 TCTTCCAAAA
**
97304940 TTTTTGTTCTTTGTT
1 TTTTTGTTCTTTCCT
97304955 TTTTTGTTCTTTCCT
1 TTTTTGTTCTTTCCT
97304970 TTTTT
1 TTTTT
97304975 ATCTTTCTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.00, C:0.11, G:0.09, T:0.80
Consensus pattern (15 bp):
TTTTTGTTCTTTCCT
Found at i:97305071 original size:16 final size:17
Alignment explanation
Indices: 97305050--97305082 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
97305040 ATTGTGTAAG
97305050 TTTTG-TTGTGACTTCT
1 TTTTGTTTGTGACTTCT
*
97305066 TTTTGTTTGTGATTTCT
1 TTTTGTTTGTGACTTCT
97305083 GTTGTATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.06, C:0.09, G:0.18, T:0.67
Consensus pattern (17 bp):
TTTTGTTTGTGACTTCT
Found at i:97305732 original size:42 final size:42
Alignment explanation
Indices: 97305655--97305734 Score: 99
Period size: 42 Copynumber: 1.9 Consensus size: 42
97305645 GACTTAGGAC
* ** *
97305655 CACATGGGTAAGCACACGGGCATGTGCCGAGGCCGTGTGAGT
1 CACACGGGTAAGCACACGACCATGTGCCGAAGCCGTGTGAGT
*
97305697 CACACGGGTAAGGACACGACCATGTGTCC-AAGCCGTGT
1 CACACGGGTAAGCACACGACCATGTG-CCGAAGCCGTGT
97305735 AACTCTTTGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
42 30 0.94
43 2 0.06
ACGTcount: A:0.24, C:0.26, G:0.34, T:0.16
Consensus pattern (42 bp):
CACACGGGTAAGCACACGACCATGTGCCGAAGCCGTGTGAGT
Found at i:97307217 original size:12 final size:12
Alignment explanation
Indices: 97307202--97307232 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
97307192 AGTAAAAGTA
97307202 GTAGTACGGTAC
1 GTAGTACGGTAC
97307214 GTAGTACGGTAC
1 GTAGTACGGTAC
*
97307226 ATAGTAC
1 GTAGTAC
97307233 CTCATCGGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (12 bp):
GTAGTACGGTAC
Found at i:97307524 original size:17 final size:18
Alignment explanation
Indices: 97307504--97307539 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
97307494 AAATAGAAAA
*
97307504 AAGGATTAAA-TTGAATT
1 AAGGATAAAAGTTGAATT
97307521 AAGGATAAAAGTTGAATT
1 AAGGATAAAAGTTGAATT
97307539 A
1 A
97307540 TAGAACAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.50, C:0.00, G:0.19, T:0.31
Consensus pattern (18 bp):
AAGGATAAAAGTTGAATT
Found at i:97307676 original size:15 final size:16
Alignment explanation
Indices: 97307656--97307693 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
97307646 TAATTAATGA
97307656 TATATAAATAT-AATT
1 TATATAAATATGAATT
97307671 TATAT-AATATGAATT
1 TATATAAATATGAATT
97307686 TATGATAA
1 TAT-ATAA
97307694 TTAAATTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 5 0.25
15 12 0.60
16 2 0.10
17 1 0.05
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (16 bp):
TATATAAATATGAATT
Found at i:97307702 original size:29 final size:28
Alignment explanation
Indices: 97307636--97307703 Score: 68
Period size: 29 Copynumber: 2.4 Consensus size: 28
97307626 TTTACTTGTT
97307636 TTAAATTATATAATTAATGATATATAAA
1 TTAAATTATATAATTAATGATATATAAA
* *
97307664 TATAATTTATATAA-T-ATGAATTTATGATAA
1 T-TAAATTATATAATTAATG-ATATAT-A-AA
97307694 TTAAATTATA
1 TTAAATTATA
97307704 ATGATATTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
27 3 0.09
28 7 0.21
29 20 0.61
30 3 0.09
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (28 bp):
TTAAATTATATAATTAATGATATATAAA
Found at i:97309155 original size:24 final size:22
Alignment explanation
Indices: 97309128--97309174 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
97309118 AGGATTTATA
*
97309128 ATATTCCGGGTGTGTTTGGGCTGG
1 ATATT-CGAGTGTGTTTGGG-TGG
*
97309152 ATATTCTAGTGTGTTTGGGTGG
1 ATATTCGAGTGTGTTTGGGTGG
97309174 A
1 A
97309175 ATCCGCGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 4 0.19
23 12 0.57
24 5 0.24
ACGTcount: A:0.13, C:0.09, G:0.38, T:0.40
Consensus pattern (22 bp):
ATATTCGAGTGTGTTTGGGTGG
Done.