Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 293 of 322
Found at i:97310062 original size:26 final size:24
Alignment explanation
Indices: 97310022--97310081 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
97310012 TTATTTTATT
* * *
97310022 AAATAAAAAAATTTAAAAATATAA
1 AAATAAATATATTTAAAAACATAA
97310046 TAAATCAAATATATTTAAAAACATAA
1 -AAAT-AAATATATTTAAAAACATAA
97310072 AAATAAATAT
1 AAATAAATAT
97310082 TCAAACAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.28
Consensus pattern (24 bp):
AAATAAATATATTTAAAAACATAA
Found at i:97310244 original size:66 final size:66
Alignment explanation
Indices: 97310174--97310306 Score: 257
Period size: 66 Copynumber: 2.0 Consensus size: 66
97310164 ATTTAAAATG
97310174 ATTAAAAATAAAATAAAAAATATATATTAATATATAATTCGGGCCGGGCCGGGCCAAAAAACTCT
1 ATTAAAAATAAAATAAAAAATATATATTAATATATAATTCGGGCCGGGCCGGGCCAAAAAACTCT
97310239 T
66 T
*
97310240 ATTAAAAATAAAATAAAATATATATATTAATATATAATTCGGGCCGGGCCGGGCCAAAAAACTCT
1 ATTAAAAATAAAATAAAAAATATATATTAATATATAATTCGGGCCGGGCCGGGCCAAAAAACTCT
97310305 T
66 T
97310306 A
1 A
97310307 CCCTAGGCCC
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.47, C:0.14, G:0.14, T:0.26
Consensus pattern (66 bp):
ATTAAAAATAAAATAAAAAATATATATTAATATATAATTCGGGCCGGGCCGGGCCAAAAAACTCT
T
Found at i:97315134 original size:44 final size:44
Alignment explanation
Indices: 97314971--97315264 Score: 269
Period size: 44 Copynumber: 6.7 Consensus size: 44
97314961 CGCCATCGTC
* * * **
97314971 GATCTGCTTTCTTCGATCTTCTTCACCACCAGTACGGGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCA-CACCAATATAGGAAGACAA
* * *
97315016 GATCTGC-ATCTTCGATCCACTTC-CTACCAGTATGGGAAGACCAA
1 GATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGA-CAA
* * * * *
97315060 -ATCTGC-ATCGTCGGTCCACTTC-CTACCAATATAGGAAGATAG
1 GATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAA
* * * *
97315102 GATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAA
* *
97315146 GATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCA-CACCAATATAGGAAGACAA
* * *
97315191 GATCTGC-ATCTTCGATCTATTTC-CTACCAATATAGGAAGATAG
1 GATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAA
* *
97315234 GATCTGCTACCTTCGATCTACTTCACGCCAA
1 GATCTGCTATCTTCGATCTACTTCACACCAA
97315265 CACATGAAGA
Statistics
Matches: 207, Mismatches: 33, Indels: 19
0.80 0.13 0.07
Matches are distributed among these distances:
42 3 0.01
43 76 0.37
44 97 0.47
45 31 0.15
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.28
Consensus pattern (44 bp):
GATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAA
Found at i:97315226 original size:132 final size:130
Alignment explanation
Indices: 97314971--97315275 Score: 414
Period size: 132 Copynumber: 2.3 Consensus size: 130
97314961 CGCCATCGTC
* * * * **
97314971 GATCTGCTTTCTTCGATCTTCTTCACCACCAGTACGGGAAGACAAGATCTGCATCTTCGATCCAC
1 GATCTGCTATCTTCGATCTACTTCA-CGCCAATACATGAAGACAAGATCTGCATCTTCGATCCAC
* * *
97315036 TTCCTACCAGTATGGGAAGACCAAATCTGCATCGTCGGTCCACTTCCTACCAATATAGGAAGATA
65 TTCCCACCAATATGGGAAGACCAAATCTGCATCGTCGATCCACTTCCTACCAATATAGGAAGATA
97315101 G
130 G
* * *
97315102 GATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTAC
1 GATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGC-ATCTTCGATCCAC
* * *
97315167 TTCACCACCAATATGGGAAGA-CAAGATCTGCATCTTCGATCTATTTCCTACCAATATAGGAAGA
65 TTC-CCACCAATATGGGAAGACCAA-ATCTGCATCGTCGATCCACTTCCTACCAATATAGGAAGA
97315231 TAG
128 TAG
* *
97315234 GATCTGCTACCTTCGATCTACTTCACGCCAACACATGAAGAC
1 GATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
97315276 TCTATTCCAC
Statistics
Matches: 153, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
130 22 0.14
131 39 0.25
132 92 0.60
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (130 bp):
GATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCATCTTCGATCCACT
TCCCACCAATATGGGAAGACCAAATCTGCATCGTCGATCCACTTCCTACCAATATAGGAAGATAG
Found at i:97315443 original size:44 final size:45
Alignment explanation
Indices: 97315349--97315752 Score: 252
Period size: 44 Copynumber: 9.1 Consensus size: 45
97315339 GGGAGGTAAA
* * * * * *
97315349 ATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAGG
1 ATCTGCTATCTTCGATCTACTTCACTGCC-AATACAGGAAGACAAG
* *
97315395 ATCTGCAATCTTCGATCTACTTCAC-GCCAATACATGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAG
* * * *
97315439 ATCTGCTTTCTTCAATCTA-TTCCACTGCCAAATACAGGGAGA-TAG
1 ATCTGCTATCTTCGATCTACTT-CACTGCC-AATACAGGAAGACAAG
** ** * * * *** * ** *
97315484 AGT-TATTGGCTTCAATGTACTCCACTG-TGGT-CAGGGAGGTAAA
1 A-TCTGCTATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAG
* * * * * *
97315527 ATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAGG
1 ATCTGCTATCTTCGATCTACTTCACTGCC-AATACAGGAAGACAAG
* * *
97315573 ATCTGCAATCTTCGATCTACTTCAC-GCCAATACATGAAGATAAG
1 ATCTGCTATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAG
* * * ** **
97315617 ATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAG
* * * * *
97315662 ATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGATAGG
1 ATCTGCTATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAG
* *
97315705 ATCTGCTACCTTCGATCTACTTCAC-GCCAATACATGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAG
97315749 ATCT
1 ATCT
97315753 ACTTTAATGA
Statistics
Matches: 271, Mismatches: 74, Indels: 28
0.73 0.20 0.08
Matches are distributed among these distances:
42 8 0.03
43 41 0.15
44 110 0.41
45 50 0.18
46 62 0.23
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (45 bp):
ATCTGCTATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAG
Found at i:97315563 original size:88 final size:88
Alignment explanation
Indices: 97315285--97315564 Score: 273
Period size: 88 Copynumber: 3.2 Consensus size: 88
97315275 CTCTATTCCA
97315285 CTGCCAAATACAGGGAGATAGAGTTATTGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAA
1 CTGCCAAATACAGGGAGATAGAGTTATTGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAA
97315350 TCTGCCATCTTTGATCTGCTTCG
66 TCTGCCATCTTTGATCTGCTTCG
* ** * * * * *** * *
97315373 CTGCCAAATACAGGAAGGCAG-G--ATCTGCAATCTTCGATCTACTTCAC-GCCAATACATGAAG
1 CTGCCAAATACAGGGAGATAGAGTTAT-TG---GCTTCAATGTACTCCACTG-TGGT-CAGGGAG
** * ** ** * *
97315434 ACAAGATCTGCTTTCTTCAATCT-ATTCCA
60 GTAAAATCTGCCATCTTTGATCTGCTT-CG
97315463 CTGCCAAATACAGGGAGATAGAGTTATTGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAA
1 CTGCCAAATACAGGGAGATAGAGTTATTGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAA
97315528 TCTGCCATCTTTGATCTGCTTCG
66 TCTGCCATCTTTGATCTGCTTCG
97315551 CTGCCAAATACAGG
1 CTGCCAAATACAGG
97315565 AAGGCAGGAT
Statistics
Matches: 138, Mismatches: 42, Indels: 24
0.68 0.21 0.12
Matches are distributed among these distances:
85 2 0.01
86 2 0.01
87 1 0.01
88 55 0.40
89 32 0.23
90 41 0.30
91 1 0.01
92 2 0.01
93 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (88 bp):
CTGCCAAATACAGGGAGATAGAGTTATTGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAA
TCTGCCATCTTTGATCTGCTTCG
Found at i:97315575 original size:178 final size:178
Alignment explanation
Indices: 97315276--97315627 Score: 695
Period size: 178 Copynumber: 2.0 Consensus size: 178
97315266 ACATGAAGAC
97315276 TCTATTCCACTGCCAAATACAGGGAGATAGAGTTATTGGCTTCAATGTACTCCACTGTGGTCAGG
1 TCTATTCCACTGCCAAATACAGGGAGATAGAGTTATTGGCTTCAATGTACTCCACTGTGGTCAGG
97315341 GAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAGGATCTGCAATCT
66 GAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAGGATCTGCAATCT
97315406 TCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCAA
131 TCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCAA
97315454 TCTATTCCACTGCCAAATACAGGGAGATAGAGTTATTGGCTTCAATGTACTCCACTGTGGTCAGG
1 TCTATTCCACTGCCAAATACAGGGAGATAGAGTTATTGGCTTCAATGTACTCCACTGTGGTCAGG
97315519 GAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAGGATCTGCAATCT
66 GAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAGGATCTGCAATCT
*
97315584 TCGATCTACTTCACGCCAATACATGAAGATAAGATCTGCTTTCT
131 TCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT
97315628 GCGATCTACT
Statistics
Matches: 173, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
178 173 1.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (178 bp):
TCTATTCCACTGCCAAATACAGGGAGATAGAGTTATTGGCTTCAATGTACTCCACTGTGGTCAGG
GAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAGGATCTGCAATCT
TCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCAA
Found at i:97316600 original size:14 final size:14
Alignment explanation
Indices: 97316581--97316609 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
97316571 TCGTCTTTGA
97316581 TTGAAAATTTGAAT
1 TTGAAAATTTGAAT
97316595 TTGAAAATTTGAAT
1 TTGAAAATTTGAAT
97316609 T
1 T
97316610 GCCCATTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.45
Consensus pattern (14 bp):
TTGAAAATTTGAAT
Found at i:97331862 original size:27 final size:26
Alignment explanation
Indices: 97331831--97332008 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
97331821 TAAATTGTAC
97331831 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
97331858 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
97331884 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
97331912 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
97331940 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
97331967 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
97331994 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
97332009 GGCTCAATAT
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 102 0.80
28 25 0.20
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:97331947 original size:82 final size:81
Alignment explanation
Indices: 97331832--97331987 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
97331822 AAATTGTACA
* * *
97331832 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
97331896 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
97331913 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
97331978 TGCGAGTTGA
65 TGCGAATTGA
97331988 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 17 0.26
82 48 0.73
83 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:97331999 original size:82 final size:81
Alignment explanation
Indices: 97331828--97332008 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
97331818 GATTAAATTG
* * *
97331828 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
97331893 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
97331909 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
97331973 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
97331991 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
97332009 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:97332019 original size:27 final size:27
Alignment explanation
Indices: 97331913--97332019 Score: 79
Period size: 27 Copynumber: 3.9 Consensus size: 27
97331903 TGACCATGCG
* * *
97331913 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
97331941 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
97331968 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
97331995 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
97332020 CATTCGTGAA
Statistics
Matches: 67, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
27 52 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:97338052 original size:237 final size:240
Alignment explanation
Indices: 97337630--97338110 Score: 833
Period size: 237 Copynumber: 2.0 Consensus size: 240
97337620 AAAGTAAAGG
* *
97337630 TAATCCGTGAAAGTCTGAAGGTAGCCACAGATCGTCAAAAATCGTATGCGGATCTGAAACGGAAG
1 TAATCCGTGAAAGTCTGAAGGTAGCCACAGATCGTCAAAAATCGTACGCAGATCT---A-GGAAG
*
97337695 GACATTGAATATCAGGTGGGAGATAAAGTGTTCCTCAAAGTTTCGCCTTGGAAAAAGGTACTCAG
62 GACATTGAATATCAGGTGGGAGATAAAGTGTTCCTCAAAGTATCGCCTTGGAAAAAGGTACTCAG
97337760 ATTTGGCCGTAAAGGCAAGTTGAGCCCGAGATTCATTGGGCCGTACGAAATTTCCGAACGAGTGG
127 ATTTGGCCGTAAAGGCAAGTTGAGCCCGAGATTCATTGGGCCGTACGAAATTTCCGAACGAGTGG
97337825 GGCCGGTTGCATATAGATTGATTTTGCCTCCTGAACTTGAAAAGATTCA
192 GGCCGGTTGCATATAGATTGATTTTGCCTCCTGAACTTGAAAAGATTCA
* * * *
97337874 TAATCCGTGAAAGTCTGAAGGTAGCCACGGATCGTCAGAAGTCGTACGCAGAT-T-TG-AGGACA
1 TAATCCGTGAAAGTCTGAAGGTAGCCACAGATCGTCAAAAATCGTACGCAGATCTAGGAAGGACA
*
97337936 TTGAATATCAGGTGGTAGATAAAGTGTTCCTCAAAGTATCGCCTTGGAAAAAGGTACTCAGATTT
66 TTGAATATCAGGTGGGAGATAAAGTGTTCCTCAAAGTATCGCCTTGGAAAAAGGTACTCAGATTT
97338001 GGCCGTAAAGGCAAGTTGAGCCCGAGATTCATTGGGCCGTACGAAATTTCCGAACGAGTGGGGCC
131 GGCCGTAAAGGCAAGTTGAGCCCGAGATTCATTGGGCCGTACGAAATTTCCGAACGAGTGGGGCC
97338066 GGTTGCATATAGATTGATTTTGCCTCCTGAACTTGAAAAGATTCA
196 GGTTGCATATAGATTGATTTTGCCTCCTGAACTTGAAAAGATTCA
97338111 CGACGTCTTT
Statistics
Matches: 229, Mismatches: 8, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
237 179 0.78
238 1 0.00
243 1 0.00
244 48 0.21
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (240 bp):
TAATCCGTGAAAGTCTGAAGGTAGCCACAGATCGTCAAAAATCGTACGCAGATCTAGGAAGGACA
TTGAATATCAGGTGGGAGATAAAGTGTTCCTCAAAGTATCGCCTTGGAAAAAGGTACTCAGATTT
GGCCGTAAAGGCAAGTTGAGCCCGAGATTCATTGGGCCGTACGAAATTTCCGAACGAGTGGGGCC
GGTTGCATATAGATTGATTTTGCCTCCTGAACTTGAAAAGATTCA
Found at i:97340135 original size:27 final size:26
Alignment explanation
Indices: 97340104--97340281 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
97340094 TAAATTGTAC
97340104 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
97340131 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
97340157 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
97340185 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
97340213 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
97340240 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
97340267 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
97340282 GGCTCAATAT
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 102 0.80
28 25 0.20
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:97340220 original size:82 final size:81
Alignment explanation
Indices: 97340105--97340260 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
97340095 AAATTGTACA
* * *
97340105 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
97340169 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
97340186 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
97340251 TGCGAGTTGA
65 TGCGAATTGA
97340261 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 17 0.26
82 48 0.73
83 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:97340272 original size:82 final size:81
Alignment explanation
Indices: 97340101--97340281 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
97340091 GATTAAATTG
* * *
97340101 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
97340166 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
97340182 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
97340246 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
97340264 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
97340282 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:97340292 original size:27 final size:27
Alignment explanation
Indices: 97340186--97340292 Score: 79
Period size: 27 Copynumber: 3.9 Consensus size: 27
97340176 TGACCATGCG
* * *
97340186 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
97340214 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
97340241 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
97340268 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
97340293 CATTCGTGAA
Statistics
Matches: 67, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
27 52 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:97342434 original size:48 final size:48
Alignment explanation
Indices: 97342342--97342476 Score: 155
Period size: 48 Copynumber: 2.8 Consensus size: 48
97342332 AAACCGAGGT
* * * * * * * *
97342342 TGATGCCATATCCCACATATGGTCTCACACTGGCACACATATCAATGGC
1 TGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCACATCAA-CGC
*
97342391 -GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATCAACGC
1 TGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCACATCAACGC
* *
97342438 TGATGCCATGTCCCAGACATTGTCTTACACTGGCTCTCA
1 TGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCA
97342477 TAAATCATAG
Statistics
Matches: 73, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
47 2 0.03
48 71 0.97
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (48 bp):
TGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCACATCAACGC
Found at i:97350124 original size:42 final size:42
Alignment explanation
Indices: 97350065--97350180 Score: 124
Period size: 42 Copynumber: 2.8 Consensus size: 42
97350055 TTCGGTGCCG
* * **
97350065 ATGCCATGTCCCAGACATAGTCTTATATGGGACCTCATATCA
1 ATGCCATGTCCAAGACATAGTCTTACATGAAACCTCATATCA
* *
97350107 ATGCCATGTCCAAGACATGGTCTTACATGAAATCTCATATCA
1 ATGCCATGTCCAAGACATAGTCTTACATGAAACCTCATATCA
* * * * * *
97350149 ACGACATATCCCAGATATGGTCTTACATGAAA
1 ATGCCATGTCCAAGACATAGTCTTACATGAAA
97350181 TCAGATACGG
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.28
Consensus pattern (42 bp):
ATGCCATGTCCAAGACATAGTCTTACATGAAACCTCATATCA
Found at i:97350143 original size:90 final size:90
Alignment explanation
Indices: 97349978--97350144 Score: 210
Period size: 90 Copynumber: 1.9 Consensus size: 90
97349968 AATGCCAATT
* * * * * *
97349978 CCATGTCCCTGACATGGTCTTACATGGGTCTACATACCGATGCCATATCCCAGATATGGTCTTAA
1 CCATGTCCCAGACATAGTCTTACATGGGCCTACATACCAATGCCATATCCAAGACATGGTCTTAA
*
97350043 ACGAAGTCTCATTTCGGTGCCGATG
66 ACGAAATCTCATTTCGGTGCCGATG
* * *
97350068 CCATGTCCCAGACATAGTCTTATATGGGACCT-CATATCAATGCCATGTCCAAGACATGGTCTTA
1 CCATGTCCCAGACATAGTCTTACATGGG-CCTACATACCAATGCCATATCCAAGACATGGTCTTA
* *
97350132 CATGAAATCTCAT
65 AACGAAATCTCAT
97350145 ATCAACGACA
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
90 62 0.97
91 2 0.03
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (90 bp):
CCATGTCCCAGACATAGTCTTACATGGGCCTACATACCAATGCCATATCCAAGACATGGTCTTAA
ACGAAATCTCATTTCGGTGCCGATG
Found at i:97350181 original size:42 final size:42
Alignment explanation
Indices: 97350098--97350182 Score: 125
Period size: 42 Copynumber: 2.0 Consensus size: 42
97350088 TATATGGGAC
* * *
97350098 CTCATATCAATGCCATGTCCAAGACATGGTCTTACATGAAAT
1 CTCATATCAACGACATATCCAAGACATGGTCTTACATGAAAT
* *
97350140 CTCATATCAACGACATATCCCAGATATGGTCTTACATGAAAT
1 CTCATATCAACGACATATCCAAGACATGGTCTTACATGAAAT
97350182 C
1 C
97350183 AGATACGGAG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (42 bp):
CTCATATCAACGACATATCCAAGACATGGTCTTACATGAAAT
Found at i:97350325 original size:48 final size:47
Alignment explanation
Indices: 97350193--97350331 Score: 197
Period size: 48 Copynumber: 2.9 Consensus size: 47
97350183 AGATACGGAG
* * * *
97350193 GCTGATGCCATATCCCAGATATGGTCTTACACTGGCACACATATCAAT
1 GCTGATGCCATGT-CCAGACATGGTCTTACACTGGCTCTCATATCAAT
* *
97350241 GCCGATGCCATGTCCTAGACATGGTTTTACACTGGCTCTCATATCAAT
1 GCTGATGCCATGTCC-AGACATGGTCTTACACTGGCTCTCATATCAAT
97350289 GCTGATGCCATGTCTCAGACATGGTCTTACACTGGCTCTCATA
1 GCTGATGCCATGTC-CAGACATGGTCTTACACTGGCTCTCATA
97350332 AATCGTGGTG
Statistics
Matches: 81, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
47 2 0.02
48 78 0.96
49 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.29
Consensus pattern (47 bp):
GCTGATGCCATGTCCAGACATGGTCTTACACTGGCTCTCATATCAAT
Found at i:97356933 original size:15 final size:15
Alignment explanation
Indices: 97356903--97356931 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
97356893 ACTATTAATA
97356903 ATTTTTTAAATATTT
1 ATTTTTTAAATATTT
97356918 ATTTTTT-AATATTT
1 ATTTTTTAAATATTT
97356932 TACCATAGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
ATTTTTTAAATATTT
Found at i:97362253 original size:7 final size:7
Alignment explanation
Indices: 97362223--97362266 Score: 67
Period size: 7 Copynumber: 6.7 Consensus size: 7
97362213 CTCAAAAATT
97362223 AAATG-G
1 AAATGAG
97362229 AAATG-G
1 AAATGAG
97362235 AAATGA-
1 AAATGAG
97362241 AAATGAG
1 AAATGAG
97362248 AAATGAG
1 AAATGAG
97362255 AAATGAG
1 AAATGAG
97362262 AAATG
1 AAATG
97362267 GTTGATTTCA
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
6 17 0.47
7 19 0.53
ACGTcount: A:0.57, C:0.00, G:0.27, T:0.16
Consensus pattern (7 bp):
AAATGAG
Found at i:97366698 original size:27 final size:27
Alignment explanation
Indices: 97366617--97366702 Score: 93
Period size: 27 Copynumber: 3.2 Consensus size: 27
97366607 ATTACTGAAA
* ***
97366617 TACCCTCGACTT-GTAAAATTACCAAAG
1 TACCCTCGATTTAG-AAAATTACCATTT
* * *
97366644 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTAGAAAATTACCATTT
97366671 TACCCTCGATTTAGAAAATTACCATTT
1 TACCCTCGATTTAGAAAATTACCATTT
97366698 TACCC
1 TACCC
97366703 CTAGGGTGTT
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.31, C:0.26, G:0.09, T:0.34
Consensus pattern (27 bp):
TACCCTCGATTTAGAAAATTACCATTT
Found at i:97367047 original size:27 final size:27
Alignment explanation
Indices: 97367001--97367491 Score: 685
Period size: 27 Copynumber: 18.2 Consensus size: 27
97366991 ATTACTGAAA
* * ***
97367001 TACCCTCGACTTGTAAAATTACCAAAG
1 TACCCTCGATTTATAAAATTACCATTT
* *
97367028 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCATTT
97367055 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTATAAAATTACCATTT
* *
97367082 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTATAAAATTACCATTT
* * *
97367109 TACCATCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCATTT
97367136 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTATAAAATTACCATTT
* *
97367163 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTATAAAATTACCATTT
* * *
97367190 TACCATCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCATTT
97367217 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTATAAAATTACCATTT
* *
97367244 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTATAAAATTACCATTT
* * *
97367271 TACCATCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCATTT
97367298 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTATAAAATTACCATTT
* *
97367325 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTATAAAATTACCATTT
* * *
97367352 TACCATCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCATTT
97367379 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTATAAAATTACCATTT
* *
97367406 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTATAAAATTACCATTT
* * *
97367433 TACCATCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCATTT
*
97367460 TACCCTCGATTTAGAAAATTACCATTT
1 TACCCTCGATTTATAAAATTACCATTT
97367487 TACCC
1 TACCC
97367492 CTAGGGTGTT
Statistics
Matches: 404, Mismatches: 60, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 404 1.00
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCATTT
Found at i:97367124 original size:81 final size:81
Alignment explanation
Indices: 97367028--97367491 Score: 910
Period size: 81 Copynumber: 5.7 Consensus size: 81
97367018 ATTACCAAAG
*
97367028 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATT
1 TACCATCGATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATT
97367093 TACAAAATTACTATTT
66 TACAAAATTACTATTT
97367109 TACCATCGATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATT
1 TACCATCGATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATT
97367174 TACAAAATTACTATTT
66 TACAAAATTACTATTT
97367190 TACCATCGATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATT
1 TACCATCGATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATT
97367255 TACAAAATTACTATTT
66 TACAAAATTACTATTT
97367271 TACCATCGATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATT
1 TACCATCGATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATT
97367336 TACAAAATTACTATTT
66 TACAAAATTACTATTT
97367352 TACCATCGATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATT
1 TACCATCGATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATT
97367417 TACAAAATTACTATTT
66 TACAAAATTACTATTT
*
97367433 TACCATCGATTTATAGAATTACCGTTTTACCCTCGATTTAGAAAATTACCATTTTACCC
1 TACCATCGATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTACCC
97367492 CTAGGGTGTT
Statistics
Matches: 381, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 381 1.00
ACGTcount: A:0.32, C:0.22, G:0.06, T:0.40
Consensus pattern (81 bp):
TACCATCGATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATT
TACAAAATTACTATTT
Found at i:97367847 original size:27 final size:26
Alignment explanation
Indices: 97367790--97367874 Score: 82
Period size: 27 Copynumber: 3.2 Consensus size: 26
97367780 ATTACTGAAA
***
97367790 TACCCTCGACTTGTA-AAATTACCAAAG
1 TACCCTCGA-TT-TAGAAATTACCATTT
* *
97367817 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTAGA-AATTACCATTT
*
97367844 TACCCTCGATTTAGAAATTACTATTT
1 TACCCTCGATTTAGAAATTACCATTT
97367870 TACCC
1 TACCC
97367875 CTAGGGTGTT
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
25 2 0.04
26 17 0.35
27 30 0.61
ACGTcount: A:0.31, C:0.25, G:0.09, T:0.35
Consensus pattern (26 bp):
TACCCTCGATTTAGAAATTACCATTT
Found at i:97367876 original size:27 final size:27
Alignment explanation
Indices: 97367817--97367874 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 27
97367807 ATTACCAAAG
* *
97367817 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTAGAGAATTACCATTT
*
97367844 TACCCTCGATTTAGA-AATTACTATTT
1 TACCCTCGATTTAGAGAATTACCATTT
97367870 TACCC
1 TACCC
97367875 CTAGGGTGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 14 0.50
27 14 0.50
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTAGAGAATTACCATTT
Found at i:97368215 original size:31 final size:32
Alignment explanation
Indices: 97368177--97368238 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
97368167 CTCGCTGCAA
* *
97368177 TCTGGTGGCTTCGCCAC-ATATATATATCTGT
1 TCTGGTGGCCTAGCCACAATATATATATCTGT
*
97368208 TCTGGTGGCCTAGCCACAATATCTATATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
97368239 GTGACTTCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 15 0.56
32 12 0.44
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.35
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:97368413 original size:31 final size:31
Alignment explanation
Indices: 97368378--97368480 Score: 138
Period size: 31 Copynumber: 3.4 Consensus size: 31
97368368 TTGCATTCAC
* *
97368378 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATTCTG
* *
97368409 ATTCTGATTCTAATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATTCTG
*
97368440 ATTCTGATTCTGATTCTAATT--CTGATTCTG
1 ATTCTGATTCTGATTCT-GTTACCTGATTCTG
97368470 ATTCTGATTCT
1 ATTCTGATTCT
97368481 CATTTTTATT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
30 20 0.31
31 43 0.67
32 1 0.02
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATTCTG
Found at i:97368417 original size:6 final size:6
Alignment explanation
Indices: 97368378--97368480 Score: 111
Period size: 6 Copynumber: 16.8 Consensus size: 6
97368368 TTGCATTCAC
* * *
97368378 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
97368427 -TCACCTG ATTCTG ATTCTG ATTCTG ATTCTA ATTCTG ATTCTG ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
97368476 ATTCT
1 ATTCT
97368481 CATTTTTATT
Statistics
Matches: 81, Mismatches: 10, Indels: 12
0.79 0.10 0.12
Matches are distributed among these distances:
5 3 0.04
6 70 0.86
7 6 0.07
8 2 0.02
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:97375494 original size:37 final size:37
Alignment explanation
Indices: 97375442--97375512 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
97375432 ACCGGGATGT
*
97375442 CGAACCCACAGGAACTAAAAGTACTAGTATTAACCGC
1 CGAACCCACAAGAACTAAAAGTACTAGTATTAACCGC
97375479 CGAACCCACAAGAACTAAAAGTACTAGTATTAAC
1 CGAACCCACAAGAACTAAAAGTACTAGTATTAAC
97375513 TTTCTTTTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.44, C:0.25, G:0.14, T:0.17
Consensus pattern (37 bp):
CGAACCCACAAGAACTAAAAGTACTAGTATTAACCGC
Found at i:97382807 original size:19 final size:18
Alignment explanation
Indices: 97382785--97382832 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
97382775 GTTCACAACA
97382785 TAATTCACATTTCATTTTC
1 TAATTCACATTTCA-TTTC
* *
97382804 TAATCCACTTTTTCATTTC
1 TAATTCAC-ATTTCATTTC
*
97382823 TAAATCACAT
1 TAATTCACAT
97382833 ACTTTACCAT
Statistics
Matches: 23, Mismatches: 5, Indels: 3
0.74 0.16 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.29, C:0.23, G:0.00, T:0.48
Consensus pattern (18 bp):
TAATTCACATTTCATTTC
Found at i:97386467 original size:24 final size:24
Alignment explanation
Indices: 97386440--97386491 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
97386430 CCATAATAGA
* *
97386440 GAAGTTCACAAAGAACCTTATCAG
1 GAAGTTCACAAAAAACCATATCAG
97386464 GAAGTTCACAAAAAACCATATCAG
1 GAAGTTCACAAAAAACCATATCAG
97386488 GAAG
1 GAAG
97386492 CTCCGGATAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.46, C:0.19, G:0.17, T:0.17
Consensus pattern (24 bp):
GAAGTTCACAAAAAACCATATCAG
Found at i:97407639 original size:13 final size:13
Alignment explanation
Indices: 97407621--97407650 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
97407611 TGAATGAAAA
*
97407621 TTGCATTGCGGTT
1 TTGCATTGCAGTT
97407634 TTGCATTGCAGTT
1 TTGCATTGCAGTT
97407647 TTGC
1 TTGC
97407651 TTTTCAGTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.10, C:0.17, G:0.27, T:0.47
Consensus pattern (13 bp):
TTGCATTGCAGTT
Found at i:97409074 original size:19 final size:19
Alignment explanation
Indices: 97409050--97409093 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
97409040 CTAGAATAAG
*
97409050 AATAAAACTTATCTTCCTA
1 AATAAAACTTATCTACCTA
* *
97409069 AATAAAATTTGTCTACCTA
1 AATAAAACTTATCTACCTA
97409088 AATAAA
1 AATAAA
97409094 TTTAAAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.48, C:0.16, G:0.02, T:0.34
Consensus pattern (19 bp):
AATAAAACTTATCTACCTA
Found at i:97411913 original size:9 final size:9
Alignment explanation
Indices: 97411899--97411924 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
97411889 ATGTTTTGCT
97411899 AATTCACAA
1 AATTCACAA
97411908 AATTCACAA
1 AATTCACAA
97411917 AATTCACA
1 AATTCACA
97411925 GTGATATGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.54, C:0.23, G:0.00, T:0.23
Consensus pattern (9 bp):
AATTCACAA
Found at i:97420479 original size:26 final size:26
Alignment explanation
Indices: 97420449--97420498 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
97420439 ATATTTAAAG
97420449 TAAACTATATCATTAGTCATTAAACA
1 TAAACTATATCATTAGTCATTAAACA
*
97420475 TAAACTATATCATTAGTTATTAAA
1 TAAACTATATCATTAGTCATTAAA
97420499 TTATGAGTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.46, C:0.12, G:0.04, T:0.38
Consensus pattern (26 bp):
TAAACTATATCATTAGTCATTAAACA
Found at i:97420612 original size:31 final size:31
Alignment explanation
Indices: 97420554--97420613 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
97420544 ATTTAGTCGT
*
97420554 TGAATTATTCAAAAAATTTCATTTAAGTTGC
1 TGAATTATTCAAAAAATTTCATGTAAGTTGC
* ** *
97420585 TGAATTATTGAAAAGTTTTTATGTAAGTT
1 TGAATTATTCAAAAAATTTCATGTAAGTT
97420614 ACTGTGTTGT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.37, C:0.05, G:0.13, T:0.45
Consensus pattern (31 bp):
TGAATTATTCAAAAAATTTCATGTAAGTTGC
Found at i:97428170 original size:202 final size:201
Alignment explanation
Indices: 97427800--97428199 Score: 676
Period size: 202 Copynumber: 2.0 Consensus size: 201
97427790 TGCTTCAACT
97427800 CTTTTATAAGCGACTGCATATAAATGCCAATATCATTCTTTAGACCTTTCTCCTCAAGGATTATC
1 CTTTTATAAGCGACTGCATATAAATGCCAATATCATTCTTTAGACCTTTCTCCTCAAGGATTATC
* * *
97427865 ATAGATAAGATAAAAGAAATTGTTTCATGCAAATCAATGGAGGCAAATTGTAAGGAAAAAGCACA
66 ATAGATAAGATAAAAAAAATTGTTTCATGCAAATCAATGGAGGAAAATTGTAAAGAAAAAGCACA
*
97427930 ATAGGCCAAGCACTATATGAAGGACTCATGATTTTAAAAGGATTAAGGCCATCAGATGCAAGCCC
131 ACAGGCCAAGCACTATATGAAGGACTCATGATTTTAAAAGGATTAAGGCCATCAGATGCAAGCCC
97427995 AAGAAA
196 AAGAAA
* *
97428001 CTTTTATAAGCGATTGCATATAAATGCCAATATCATTCTTTATACCTTTCTCC-CTAAGGATTAT
1 CTTTTATAAGCGACTGCATATAAATGCCAATATCATTCTTTAGACCTTTCTCCTC-AAGGATTAT
* *
97428065 CATAGATAAGATAAAAAAAGATTGTTTCATGCAAATCCATGGAGGAAAATTGTAAAGAACAAGCA
65 CATAGATAAGATAAAAAAA-ATTGTTTCATGCAAATCAATGGAGGAAAATTGTAAAGAAAAAGCA
* * *
97428130 CAACAGGCCAAGTACTATATGAAGGACTCGTGATTTTAAAAGGATTAAGGCCATCAGATGCACGC
129 CAACAGGCCAAGCACTATATGAAGGACTCATGATTTTAAAAGGATTAAGGCCATCAGATGCAAGC
97428195 CCAAG
194 CCAAG
97428200 CCTCACATTC
Statistics
Matches: 186, Mismatches: 11, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
200 1 0.01
201 78 0.42
202 107 0.58
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (201 bp):
CTTTTATAAGCGACTGCATATAAATGCCAATATCATTCTTTAGACCTTTCTCCTCAAGGATTATC
ATAGATAAGATAAAAAAAATTGTTTCATGCAAATCAATGGAGGAAAATTGTAAAGAAAAAGCACA
ACAGGCCAAGCACTATATGAAGGACTCATGATTTTAAAAGGATTAAGGCCATCAGATGCAAGCCC
AAGAAA
Found at i:97429146 original size:234 final size:235
Alignment explanation
Indices: 97428487--97429176 Score: 1127
Period size: 235 Copynumber: 2.9 Consensus size: 235
97428477 TATGTATAGT
* *
97428487 AATGCCAATATAGTTCTTTAGACCTTTCTCCCCAAGGATTATCATAGATAAAATAAAAGAAGATT
1 AATGCCAATATCGTTCTTTAGACCTTTCTCCCCAAGGATTATCATAGATAAGATAAAAGAAGATT
* * * * *
97428552 GTTTCATGCAAA-TCTATGGAGGCATATTGTAAGGATCAAGCATAACAGGCGAAGTACTATATGA
66 GTTTCATGCAAATTC-ATGGAGGCAAATTGTAAGGAACAAGCACAACAAGCCAAGTACTATATGA
*
97428616 AGGACTCATGATTTTAAAAGGATTAAGGCCATCAGATGCAAGCCCAAGCCTCACATTCTTAAGAT
130 AGGACTCATGATTTTAAAAGGATTAAGGCCATCAGATGCAAGCCCAAGCCTCACATTCTTAGGAT
97428681 TGT-TTGCAAAACTTAGAAACTTTTATAAGCGACTGCATATA
195 T-TCTTGCAAAACTTAGAAACTTTTATAAGCGACTGCATATA
* * * *
97428722 AATGCCAATATCATTCTTTAGACCTTTCTCCCTAGGGATTATCATAGATAAGATAAAATAAGATT
1 AATGCCAATATCGTTCTTTAGACCTTTCTCCCCAAGGATTATCATAGATAAGATAAAAGAAGATT
* *
97428787 GTTTCATGCAAATCCATAGAGGCAAATTGTAAGGAACAAGCACAACAAGCCAAGTACTATATGAA
66 GTTTCATGCAAATTCATGGAGGCAAATTGTAAGGAACAAGCACAACAAGCCAAGTACTATATGAA
* *
97428852 GGACTCATGATTTTAAAAGGATTAAGGCTATCAGATGCAAGCCTAAGCCTCACATTCTTAGGATT
131 GGACTCATGATTTTAAAAGGATTAAGGCCATCAGATGCAAGCCCAAGCCTCACATTCTTAGGATT
*
97428917 TCTTGCAAAACTTAGAAACTTTTATAAGTGACTGCATATA
196 TCTTGCAAAACTTAGAAACTTTTATAAGCGACTGCATATA
* *
97428957 AATGCCAATATCGTTCTTTAGACCTTTCACCCCAAAGATTATCATAGATAAGATAAAAGAA-ATT
1 AATGCCAATATCGTTCTTTAGACCTTTCTCCCCAAGGATTATCATAGATAAGATAAAAGAAGA-T
*
97429021 TGTTTCATG-AAATTCATGGAGGCAAATTGTAAGGAACAAACACAACAAGCCAAGTACTATATGA
65 TGTTTCATGCAAATTCATGGAGGCAAATTGTAAGGAACAAGCACAACAAGCCAAGTACTATATGA
97429085 AGGACTCATGATTTTAAAAGGATTAAGGCCATCAGATGCAAGCCCAAGCCTCACATTCTTAGGAT
130 AGGACTCATGATTTTAAAAGGATTAAGGCCATCAGATGCAAGCCCAAGCCTCACATTCTTAGGAT
*
97429150 TTCTTGCAAAACTTGGAAACGTTTTAT
195 TTCTTGCAAAACTTAGAAAC-TTTTAT
97429177 CAAATGATTT
Statistics
Matches: 422, Mismatches: 29, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
234 136 0.32
235 285 0.68
236 1 0.00
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (235 bp):
AATGCCAATATCGTTCTTTAGACCTTTCTCCCCAAGGATTATCATAGATAAGATAAAAGAAGATT
GTTTCATGCAAATTCATGGAGGCAAATTGTAAGGAACAAGCACAACAAGCCAAGTACTATATGAA
GGACTCATGATTTTAAAAGGATTAAGGCCATCAGATGCAAGCCCAAGCCTCACATTCTTAGGATT
TCTTGCAAAACTTAGAAACTTTTATAAGCGACTGCATATA
Found at i:97434160 original size:49 final size:48
Alignment explanation
Indices: 97434042--97434166 Score: 153
Period size: 48 Copynumber: 2.6 Consensus size: 48
97434032 CATATCGGTA
* *
97434042 CCGATGCCAT-TTTCCAGACATGGTCTTACACTGGCACACATATCAACG
1 CCGATGCCATGTCT-CAAACATGGTCTTACACTGGCACACATATCAACG
* * * * *
97434090 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATCTCGAATG
1 CCGATGCCATGTCTCAAACATGGTCTTACACTGGCACACATATC-AACG
*
97434139 CCGATGCCATGTCTCATACATGGTCTTA
1 CCGATGCCATGTCTCAAACATGGTCTTA
97434167 GACGGGATCT
Statistics
Matches: 66, Mismatches: 9, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
48 36 0.55
49 30 0.45
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (48 bp):
CCGATGCCATGTCTCAAACATGGTCTTACACTGGCACACATATCAACG
Found at i:97438535 original size:13 final size:12
Alignment explanation
Indices: 97438517--97438554 Score: 51
Period size: 13 Copynumber: 3.1 Consensus size: 12
97438507 TTATAAAAAA
97438517 TCATTTTAACATT
1 TCATTTTAA-ATT
97438530 TCA-TTTAAATT
1 TCATTTTAAATT
97438541 TCATCTTTAAATT
1 TCAT-TTTAAATT
97438554 T
1 T
97438555 GTGTTTTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 6 0.26
12 5 0.22
13 12 0.52
ACGTcount: A:0.32, C:0.13, G:0.00, T:0.55
Consensus pattern (12 bp):
TCATTTTAAATT
Found at i:97453623 original size:18 final size:17
Alignment explanation
Indices: 97453581--97453625 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
97453571 AAATAAACAT
*
97453581 AAAATAAAAAGAAAAGAG
1 AAAAT-AAAAGAAAAGAA
*
97453599 AAGATAAAAGAAAAGAAA
1 AAAATAAAAGAAAAG-AA
97453617 AAAATAAAA
1 AAAATAAAA
97453626 AAATAAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 10 0.43
18 13 0.57
ACGTcount: A:0.80, C:0.00, G:0.13, T:0.07
Consensus pattern (17 bp):
AAAATAAAAGAAAAGAA
Found at i:97460350 original size:25 final size:25
Alignment explanation
Indices: 97460304--97460351 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
97460294 AAGTTCATAC
* *
97460304 GAGCTGAGTATCGGTAAGCTAATAA
1 GAGCTGAGAATCGGTAACCTAATAA
97460329 GAGCTG-GAATCGGTAACCCTAAT
1 GAGCTGAGAATCGGTAA-CCTAAT
97460352 GGCATGTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.23
Consensus pattern (25 bp):
GAGCTGAGAATCGGTAACCTAATAA
Found at i:97461680 original size:45 final size:45
Alignment explanation
Indices: 97461631--97461717 Score: 120
Period size: 45 Copynumber: 1.9 Consensus size: 45
97461621 AGACAATGCC
* * *
97461631 GAAAGATGCTATGTAATTAGGATAAAAAAGAGTAATACCATAATT
1 GAAAGATGCTATGGAATCAGGATAAAAAAGAGTAAGACCATAATT
* **
97461676 GAAAGATGCTATGGCATCAGGATAAAATTGAGTAAGACCATA
1 GAAAGATGCTATGGAATCAGGATAAAAAAGAGTAAGACCATA
97461718 GCTCAAAGAC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.46, C:0.09, G:0.21, T:0.24
Consensus pattern (45 bp):
GAAAGATGCTATGGAATCAGGATAAAAAAGAGTAAGACCATAATT
Found at i:97463853 original size:20 final size:21
Alignment explanation
Indices: 97463816--97463854 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
97463806 TTTGTGTTTG
97463816 GATTGAATTTCTTCTTGATCA
1 GATTGAATTTCTTCTTGATCA
97463837 GATT-AATTCTCTT-TTGAT
1 GATTGAATT-TCTTCTTGAT
97463855 TCTTTTTGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.23, C:0.13, G:0.13, T:0.51
Consensus pattern (21 bp):
GATTGAATTTCTTCTTGATCA
Found at i:97464828 original size:23 final size:23
Alignment explanation
Indices: 97464802--97464847 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
97464792 AAAACTAGAG
*
97464802 TTATCATGGTAATTATTGTAAAT
1 TTATCAGGGTAATTATTGTAAAT
97464825 TTATCAGGGTAATTATTGTAAAT
1 TTATCAGGGTAATTATTGTAAAT
97464848 ACTAAAGATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.04, G:0.15, T:0.46
Consensus pattern (23 bp):
TTATCAGGGTAATTATTGTAAAT
Found at i:97480588 original size:28 final size:28
Alignment explanation
Indices: 97480556--97480643 Score: 131
Period size: 28 Copynumber: 3.1 Consensus size: 28
97480546 AGACCATTGA
* * *
97480556 ATACTCAATGTCTCGCATACTAAGTGCC
1 ATACTCGATATCTCGCACACTAAGTGCC
97480584 ATACTCGATATCTCGCACACTAAGTGCC
1 ATACTCGATATCTCGCACACTAAGTGCC
* *
97480612 ACACTCGATATCTCACACACTAAGTGCC
1 ATACTCGATATCTCGCACACTAAGTGCC
97480640 ATAC
1 ATAC
97480644 ATAGTCGAAG
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 54 1.00
ACGTcount: A:0.31, C:0.32, G:0.12, T:0.25
Consensus pattern (28 bp):
ATACTCGATATCTCGCACACTAAGTGCC
Found at i:97480682 original size:40 final size:40
Alignment explanation
Indices: 97480627--97480731 Score: 129
Period size: 40 Copynumber: 2.6 Consensus size: 40
97480617 CGATATCTCA
* *
97480627 CACACTAAGTGCCATACATAGTCGAAGCTATCTCAAATTG
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATCG
* * * *
97480667 CACACTAATTGCCATATATAGCCGAAGCTATGTCGAATCG
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATCG
* * *
97480707 CACACTAGGTGCCACAAATAGCCGA
1 CACACTAAGTGCCATACATAGCCGA
97480732 TTTGTTGTCG
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.22
Consensus pattern (40 bp):
CACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATCG
Found at i:97487058 original size:50 final size:50
Alignment explanation
Indices: 97486986--97487210 Score: 199
Period size: 50 Copynumber: 4.5 Consensus size: 50
97486976 TGAATACATG
*
97486986 TGTGT-GTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCACA
* * ** ** *
97487035 TGTTTAGTACTAAGTGCAGGCTACTATGCATACTCAATGACT-TCGA-TCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-C-AT-ACTGTTAAGTCACA
* * * * *
97487086 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCA-AATGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACT-GTTAAGTCACA
** * * *
97487136 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCACA
* *
97487185 TGAGTAGTACTAAGAGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
97487211 TGCGTATCAG
Statistics
Matches: 143, Mismatches: 25, Indels: 16
0.78 0.14 0.09
Matches are distributed among these distances:
47 2 0.01
49 35 0.24
50 65 0.45
51 34 0.24
52 4 0.03
53 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCACA
Found at i:97487443 original size:50 final size:50
Alignment explanation
Indices: 97487378--97487478 Score: 184
Period size: 50 Copynumber: 2.0 Consensus size: 50
97487368 GAAAAGTTAG
* *
97487378 GAGCTATGTGCTCAATAATTGGGTGAATTCTGGTATAACAAAAAGGCCTA
1 GAGCTATGTGCTCAATAATTGAGTGAATTCTGGTATAACAAAAAGGACTA
97487428 GAGCTATGTGCTCAATAATTGAGTGAATTCTGGTATAACAAAAAGGACTA
1 GAGCTATGTGCTCAATAATTGAGTGAATTCTGGTATAACAAAAAGGACTA
97487478 G
1 G
97487479 GTGAAATTAT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.28
Consensus pattern (50 bp):
GAGCTATGTGCTCAATAATTGAGTGAATTCTGGTATAACAAAAAGGACTA
Found at i:97489519 original size:32 final size:32
Alignment explanation
Indices: 97489478--97489541 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
97489468 ACATGTCAGT
97489478 ATAACATAAGCTTAGGCTGGCACTCTGGCCTC
1 ATAACATAAGCTTAGGCTGGCACTCTGGCCTC
*
97489510 ATAACATAAGCTTAGGCTGGCCCTCTGGCCTC
1 ATAACATAAGCTTAGGCTGGCACTCTGGCCTC
97489542 CGACTGATGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (32 bp):
ATAACATAAGCTTAGGCTGGCACTCTGGCCTC
Found at i:97499756 original size:40 final size:40
Alignment explanation
Indices: 97499710--97499790 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
97499700 AAAAGTAATA
*
97499710 ATCAAAACTGTAACATAAACAGCGTGTGTGGCTTCTTCCG
1 ATCAAAACTGTAACATAAACAGCGTGTGTGGCTTCCTCCG
*
97499750 ATCAAAACTGTAACATAAACAGTGTGTGTGGCTTCCTCCG
1 ATCAAAACTGTAACATAAACAGCGTGTGTGGCTTCCTCCG
97499790 A
1 A
97499791 GCCCCTCCCA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (40 bp):
ATCAAAACTGTAACATAAACAGCGTGTGTGGCTTCCTCCG
Found at i:97500058 original size:6 final size:6
Alignment explanation
Indices: 97500028--97500231 Score: 134
Period size: 6 Copynumber: 33.3 Consensus size: 6
97500018 AAGAAACATT
* * * *
97500028 ATCAGA A-CTAGA ATCAAA ATGAGA ATTAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * *
97500077 ATCAGA ATCAGT ATCAGGTA A-CAGA ATTAGA ATCAAA ATTAGA ATCAGA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * * *
97500126 ATCAGA ATCAGT ATTAG- GTGACAGA AGCAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
97500176 ATCAGA ATCAGA A-CAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
97500224 ATCAGA AT
1 ATCAGA AT
97500232 GTGAATGCAA
Statistics
Matches: 154, Mismatches: 26, Indels: 36
0.71 0.12 0.17
Matches are distributed among these distances:
5 14 0.09
6 121 0.79
7 15 0.10
8 4 0.03
ACGTcount: A:0.47, C:0.14, G:0.20, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:97500083 original size:25 final size:25
Alignment explanation
Indices: 97500049--97500231 Score: 179
Period size: 25 Copynumber: 7.7 Consensus size: 25
97500039 AATCAAAATG
* *
97500049 AGAATTAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTAAC
*
97500074 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGGTAAC
* * *
97500099 AGAATTAGAATCAAAATTA-G-AATC
1 AGAATCAGAATCAGAATCAGGTAA-C
* * *
97500123 AGAATCAGAATCAGTATTAGGTGAC
1 AGAATCAGAATCAGAATCAGGTAAC
* *
97500148 AGAAGCAGAATCAGTATCAGGT---
1 AGAATCAGAATCAGAATCAGGTAAC
97500170 --AA-CAGAATCAGAATCA-G-AAC
1 AGAATCAGAATCAGAATCAGGTAAC
*
97500190 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGGTAAC
97500215 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
97500232 GTGAATGCAA
Statistics
Matches: 131, Mismatches: 16, Indels: 22
0.78 0.09 0.13
Matches are distributed among these distances:
18 1 0.01
19 13 0.10
20 2 0.02
22 2 0.02
23 15 0.11
24 19 0.15
25 78 0.60
26 1 0.01
ACGTcount: A:0.46, C:0.14, G:0.20, T:0.20
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTAAC
Found at i:97500170 original size:74 final size:73
Alignment explanation
Indices: 97500049--97500209 Score: 241
Period size: 74 Copynumber: 2.2 Consensus size: 73
97500039 AATCAAAATG
* * *
97500049 AGAATTAGAATCAGAATCAGGTGACAGAATCAGAATCAGTATCAGGTAACAGAATTAGAATCAAA
1 AGAATCAGAATCAGAATCAGGTGACAGAAGCAGAATCAGTATCAGGTAACAGAATCAGAATCAAA
*
97500114 ATTAGAATC
66 A-CAGAATC
* * *
97500123 AGAATCAGAATCAGTATTAGGTGACAGAAGCAGAATCAGTATCAGGTAACAGAATCAGAATCAGA
1 AGAATCAGAATCAGAATCAGGTGACAGAAGCAGAATCAGTATCAGGTAACAGAATCAGAATCAAA
97500188 ACAGAATC
66 ACAGAATC
*
97500196 AGAATCAGTATCAG
1 AGAATCAGAATCAG
97500210 GTAACAGAAT
Statistics
Matches: 79, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
73 19 0.24
74 60 0.76
ACGTcount: A:0.46, C:0.14, G:0.20, T:0.20
Consensus pattern (73 bp):
AGAATCAGAATCAGAATCAGGTGACAGAAGCAGAATCAGTATCAGGTAACAGAATCAGAATCAAA
ACAGAATC
Found at i:97500199 original size:42 final size:42
Alignment explanation
Indices: 97500146--97500230 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
97500136 GTATTAGGTG
97500146 ACAGAAGCAGAATCAGTATCAGGTAACAGAATCAGAATCAGA
1 ACAGAAGCAGAATCAGTATCAGGTAACAGAATCAGAATCAGA
*
97500188 ACAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGA
1 ACAGAAGCAGAATCAGTATCAGGTAACAGAATCAGAATCAGA
97500230 A
1 A
97500231 TGTGAATGCA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.48, C:0.16, G:0.20, T:0.15
Consensus pattern (42 bp):
ACAGAAGCAGAATCAGTATCAGGTAACAGAATCAGAATCAGA
Found at i:97500402 original size:27 final size:27
Alignment explanation
Indices: 97500348--97500428 Score: 85
Period size: 27 Copynumber: 3.0 Consensus size: 27
97500338 AGCATGGCTT
* * **
97500348 CCAGAAT-AGATATTGTGACAAAATCA
1 CCAGAATCAGATAATGTGGCAAAGCCA
* *
97500374 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAAAGCCA
97500401 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAATCAGATAATGTGGCAAAGCCA
97500428 C
1 C
97500429 TTAATAGAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
25 2 0.04
26 4 0.09
27 38 0.83
28 2 0.04
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.19
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAAAGCCA
Found at i:97501968 original size:54 final size:54
Alignment explanation
Indices: 97501076--97501960 Score: 1698
Period size: 54 Copynumber: 16.4 Consensus size: 54
97501066 AAAATGGAAA
* * * *
97501076 TTTTACCCCACAAGGGTATCTCGGTAATTCTATCCTACAGGGGTATTTCGGTAT
1 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAT
97501130 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAT
1 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAT
97501184 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAT
1 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAT
97501238 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAT
1 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAT
97501292 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAT
1 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAT
97501346 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAT
1 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAT
97501400 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAT
1 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAT
97501454 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAT
1 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAT
97501508 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAT
1 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAT
97501562 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAT
1 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAT
97501616 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAT
1 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAT
97501670 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAT
1 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAT
97501724 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAT
1 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAT
97501778 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAT
1 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAT
97501832 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAT
1 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAT
* * *
97501886 TTTTACCCTACAAGGGTATTTCGATAATTCTACCATACAGGGGTATTTCAGTAA
1 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAT
*
97501940 TTTTACCCTACAGGGGTATTT
1 TTTTACCCTACAAGGGTATTT
97501961 TAATAATTTC
Statistics
Matches: 823, Mismatches: 8, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
54 823 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (54 bp):
TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAT
Found at i:97502037 original size:27 final size:26
Alignment explanation
Indices: 97502007--97502212 Score: 182
Period size: 27 Copynumber: 7.7 Consensus size: 26
97501997 TGTAAATTGG
* **
97502007 GGGTACTTTGGTAATTTTACAAGTTGA
1 GGGTATTTTGGTAATTTTACAA-TCCA
** * *
97502034 GGGT-TTTTCAATAATTTTACAGGTCGA
1 GGGTATTTT-GGTAATTTTACA-ATCCA
** *
97502061 GGGTATTTCAGTAATTTCACAAGT-CA
1 GGGTATTTTGGTAATTTTACAA-TCCA
*
97502087 GGGGTATTTTGGTAATTTTACAAACCA
1 -GGGTATTTTGGTAATTTTACAATCCA
*
97502114 GGGGTATTTTGGTAATTTTACAAACCAA
1 -GGGTATTTTGGTAATTTTACAATCC-A
*
97502142 GGGTATTTTGGTAATTTTACAAACCA
1 GGGTATTTTGGTAATTTTACAATCCA
* *
97502168 GGGATATTTTGGTAATTTTGCTAATCGA
1 GGG-TATTTTGGTAATTTTAC-AATCCA
97502196 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
97502213 GGTAAACTAA
Statistics
Matches: 153, Mismatches: 17, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
26 8 0.05
27 134 0.88
28 11 0.07
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.40
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAATCCA
Found at i:97502130 original size:81 final size:81
Alignment explanation
Indices: 97502060--97502212 Score: 209
Period size: 81 Copynumber: 1.9 Consensus size: 81
97502050 TTACAGGTCG
** *
97502060 AGGGTATTTCAGTAATTTCACAAGTCAGGGGTATTTTGGTAATTTTACAAACC-AGGGGTATTTT
1 AGGGTATTTCAGTAATTTCACAAACCAGGGATATTTTGGTAATTTTACAAACCGA-GGGTATTTT
97502124 GGTAATTTTACAAACCA
65 GGTAATTTTACAAACCA
** * * * *
97502141 AGGGTATTTTGGTAATTTTACAAACCAGGGATATTTTGGTAATTTTGCTAATCGAGGGTATTTTG
1 AGGGTATTTCAGTAATTTCACAAACCAGGGATATTTTGGTAATTTTACAAACCGAGGGTATTTTG
97502206 GTAATTT
66 GTAATTT
97502213 GGTAAACTAA
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
81 61 0.98
82 1 0.02
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (81 bp):
AGGGTATTTCAGTAATTTCACAAACCAGGGATATTTTGGTAATTTTACAAACCGAGGGTATTTTG
GTAATTTTACAAACCA
Found at i:97503686 original size:44 final size:44
Alignment explanation
Indices: 97503617--97503708 Score: 123
Period size: 44 Copynumber: 2.1 Consensus size: 44
97503607 CCGAATTAAC
*
97503617 AGTAACAGTACGACACACAAGGTGCCTCATCAACTTAAAGTCGA
1 AGTAACAGTACGACACACAAGGTGCCTCATCAACTCAAAGTCGA
** * *
97503661 AGTAACAGTACGACACTTATA-GTGCCTCATCGACTCAATGTCGA
1 AGTAACAGTACGACACACA-AGGTGCCTCATCAACTCAAAGTCGA
97503705 AGTA
1 AGTA
97503709 TCCCTGAACA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 41 0.98
45 1 0.02
ACGTcount: A:0.36, C:0.24, G:0.18, T:0.22
Consensus pattern (44 bp):
AGTAACAGTACGACACACAAGGTGCCTCATCAACTCAAAGTCGA
Found at i:97504398 original size:12 final size:11
Alignment explanation
Indices: 97504358--97504398 Score: 55
Period size: 12 Copynumber: 3.5 Consensus size: 11
97504348 TTAATATTTA
97504358 AATTTCTTATTC
1 AATTTC-TATTC
97504370 AATTTCTATTC
1 AATTTCTATTC
*
97504381 AATTTCTACTTT
1 AATTTCTA-TTC
97504393 AATTTC
1 AATTTC
97504399 AATTTTAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 13 0.48
12 14 0.52
ACGTcount: A:0.27, C:0.17, G:0.00, T:0.56
Consensus pattern (11 bp):
AATTTCTATTC
Found at i:97505945 original size:12 final size:11
Alignment explanation
Indices: 97505905--97505945 Score: 55
Period size: 12 Copynumber: 3.5 Consensus size: 11
97505895 TTAATATTTA
97505905 AATTTCTTATTC
1 AATTTC-TATTC
97505917 AATTTCTATTC
1 AATTTCTATTC
*
97505928 AATTTCTACTTT
1 AATTTCTA-TTC
97505940 AATTTC
1 AATTTC
97505946 AATTTTAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 13 0.48
12 14 0.52
ACGTcount: A:0.27, C:0.17, G:0.00, T:0.56
Consensus pattern (11 bp):
AATTTCTATTC
Found at i:97506832 original size:5 final size:5
Alignment explanation
Indices: 97506822--97506875 Score: 65
Period size: 5 Copynumber: 10.6 Consensus size: 5
97506812 TTATTTCATA
* *
97506822 ATAAT ATAAT ATAAT ATAAC ATAAT ATAAT -TAAT ATAATT CAAAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAA-T -ATAAT ATAAT
97506873 ATA
1 ATA
97506876 GTTTAATATT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
4 4 0.10
5 33 0.79
6 2 0.05
7 3 0.07
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (5 bp):
ATAAT
Found at i:97508616 original size:47 final size:47
Alignment explanation
Indices: 97508521--97508650 Score: 147
Period size: 47 Copynumber: 2.8 Consensus size: 47
97508511 GTATGAATAA
* * * *
97508521 TACCTTGATGTGGCTACAGGCCATGGTATAGGTATTCATAGAGGAGT
1 TACCTTGATTTGTCTACAGGCCATGGTATAGGTACTCATAGAGAAGT
* *
97508568 TACCTTGATTTGTCTACAGGCCATGGTATAGGTACT-ATGGGATAAGT
1 TACCTTGATTTGTCTACAGGCCATGGTATAGGTACTCAT-AGAGAAGT
* * *
97508615 TATCTTGATTTGGT-TACGGGACATGGTATAGGTACT
1 TACCTTGATTT-GTCTACAGGCCATGGTATAGGTACT
97508651 TATCAATTGT
Statistics
Matches: 72, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
46 2 0.03
47 68 0.94
48 2 0.03
ACGTcount: A:0.25, C:0.14, G:0.28, T:0.34
Consensus pattern (47 bp):
TACCTTGATTTGTCTACAGGCCATGGTATAGGTACTCATAGAGAAGT
Found at i:97514477 original size:21 final size:19
Alignment explanation
Indices: 97514451--97514499 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
97514441 CTTCCTTTTC
97514451 TTCTTTTCTTCTCTTCACCTT
1 TTCTTTTCTTCTC-TC-CCTT
* *
97514472 TTCTTTTATTTTCTCCCTT
1 TTCTTTTCTTCTCTCCCTT
*
97514491 TTCCTTTCT
1 TTCTTTTCT
97514500 CTTCCTTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
19 11 0.46
20 2 0.08
21 11 0.46
ACGTcount: A:0.04, C:0.31, G:0.00, T:0.65
Consensus pattern (19 bp):
TTCTTTTCTTCTCTCCCTT
Found at i:97517984 original size:55 final size:55
Alignment explanation
Indices: 97517914--97518103 Score: 272
Period size: 55 Copynumber: 3.5 Consensus size: 55
97517904 TGTGCCCTTA
* * *
97517914 GCCCGTGTGCAACACTGACTTTAAAACACGGCCATGACACATGCCCGTGTGGCCT
1 GCCCGTGTACAACACTGACTTTAAAACACGGCCTTGACACACGCCCGTGTGGCCT
* * *
97517969 ACCCGTGTACGACACTGACTTTAAAACACGGCCTTGACACACGCCCGTGTAGCCT
1 GCCCGTGTACAACACTGACTTTAAAACACGGCCTTGACACACGCCCGTGTGGCCT
* * *
97518024 GCCCGTGTACGACACTGACTTTAAAACACGGCCTTGATACACGCCCGTGTGGCTT
1 GCCCGTGTACAACACTGACTTTAAAACACGGCCTTGACACACGCCCGTGTGGCCT
* * *
97518079 GCTCGTGTTCAACACTAACTTTAAA
1 GCCCGTGTACAACACTGACTTTAAA
97518104 TTTTAAGTAC
Statistics
Matches: 121, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 121 1.00
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.23
Consensus pattern (55 bp):
GCCCGTGTACAACACTGACTTTAAAACACGGCCTTGACACACGCCCGTGTGGCCT
Found at i:97518940 original size:49 final size:47
Alignment explanation
Indices: 97518887--97519134 Score: 179
Period size: 44 Copynumber: 5.3 Consensus size: 47
97518877 TTTTAGACTT
*
97518887 GGTCTTACACTGGCTATCATCATCGAGGCTGATGCCATGTCCTAGACA
1 GGTCTTACACTGGCTATCATCATCGAGGCTGATG-CATGTCCCAGACA
* * ** * *
97518935 GGGTCTTATACTAGCCCTCTTCTAT--ATGTGCTGATGCATGTCCCAAACA
1 -GGTCTTACACTGGCTATCATC-ATCGA-G-GCTGATGCATGTCCCAGACA
* * * * * * *
97518984 TGTCTTACACTAGC-A-CAAC-TCTTA-GCCGATGCGTGTCCCAAACA
1 GGTCTTACACTGGCTATCATCATC-GAGGCTGATGCATGTCCCAGACA
* *
97519028 CGTCTTACACTGGCTATCATCATCGAGGCTGATACATGTCCCAGACA
1 GGTCTTACACTGGCTATCATCATCGAGGCTGATGCATGTCCCAGACA
* * * *
97519075 TGGTCTTACACTGGCTA-CAT-ATTGTGGCCGATGCATGTCTCAGACA
1 -GGTCTTACACTGGCTATCATCATCGAGGCTGATGCATGTCCCAGACA
* *
97519121 TGTCTTTCACTGGC
1 GGTCTTACACTGGC
97519135 ACACAAGTAA
Statistics
Matches: 158, Mismatches: 30, Indels: 26
0.74 0.14 0.12
Matches are distributed among these distances:
44 31 0.20
45 13 0.08
46 27 0.17
47 22 0.14
48 28 0.18
49 28 0.18
50 9 0.06
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (47 bp):
GGTCTTACACTGGCTATCATCATCGAGGCTGATGCATGTCCCAGACA
Found at i:97519087 original size:48 final size:48
Alignment explanation
Indices: 97518881--97519134 Score: 188
Period size: 49 Copynumber: 5.4 Consensus size: 48
97518871 GCCATGTTTT
* *
97518881 AGACTTGGTCTTACACTGGCTATCATCATCGAGGCTGATGCCATGTCCT
1 AGACATGGTCTTACACTGGCTATCATCATCGAGGCTGATG-CATGTCCC
* * * ** *
97518930 AGACAGGGTCTTATACTAGCCCTCTTCTAT--ATGTGCTGATGCATGTCCC
1 AGACATGGTCTTACACTGGCTATCATC-ATCGA-G-GCTGATGCATGTCCC
* * * * * *
97518979 AAACAT-GTCTTACACTAGC-A-CAAC-TCTTA-GCCGATGCGTGTCCC
1 AGACATGGTCTTACACTGGCTATCATCATC-GAGGCTGATGCATGTCCC
* * *
97519023 AAACA-CGTCTTACACTGGCTATCATCATCGAGGCTGATACATGTCCC
1 AGACATGGTCTTACACTGGCTATCATCATCGAGGCTGATGCATGTCCC
* * * *
97519070 AGACATGGTCTTACACTGGCTA-CAT-ATTGTGGCCGATGCATGTCTC
1 AGACATGGTCTTACACTGGCTATCATCATCGAGGCTGATGCATGTCCC
*
97519116 AGACAT-GTCTTTCACTGGC
1 AGACATGGTCTTACACTGGC
97519135 ACACAAGTAA
Statistics
Matches: 163, Mismatches: 30, Indels: 28
0.74 0.14 0.13
Matches are distributed among these distances:
44 31 0.19
45 13 0.08
46 28 0.17
47 22 0.13
48 28 0.17
49 32 0.20
50 9 0.06
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (48 bp):
AGACATGGTCTTACACTGGCTATCATCATCGAGGCTGATGCATGTCCC
Found at i:97519134 original size:93 final size:91
Alignment explanation
Indices: 97518964--97519134 Score: 211
Period size: 93 Copynumber: 1.9 Consensus size: 91
97518954 TTCTATATGT
* *
97518964 GCTGATGCATGTCCCAAACATGTCTTACACTAGCACAACTCTTAGCCGATGCGTGTCCCAAACAC
1 GCTGATACATGTCCCAAACATGTCTTACACTAGCACAACTCTTAGCCGATGCATGTCCCAAACAC
97519029 GTCTTACACTGGCTATCATCATCGAG
66 GTCTTACACTGGCTATCATCATCGAG
* * * * *
97519055 GCTGATACATGTCCCAGACATGGTCTTACACTGGCTACATA-T-TGTGGCCGATGCATGTCTCAG
1 GCTGATACATGTCCCAAACAT-GTCTTACACTAGC-ACA-ACTCT-TAGCCGATGCATGTCCCAA
* *
97519118 ACATGTCTTTCACTGGC
62 ACACGTCTTACACTGGC
97519135 ACACAAGTAA
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
91 19 0.28
92 13 0.19
93 34 0.51
94 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (91 bp):
GCTGATACATGTCCCAAACATGTCTTACACTAGCACAACTCTTAGCCGATGCATGTCCCAAACAC
GTCTTACACTGGCTATCATCATCGAG
Found at i:97519516 original size:30 final size:30
Alignment explanation
Indices: 97519476--97519532 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
97519466 AATTCACATA
* *
97519476 TTTGGTAAAATGACCATTTTGCCCCTAGAC
1 TTTGGCAAAATGACCATTTTACCCCTAGAC
97519506 TTTGGCAAAATGACCATTTTACCCCTA
1 TTTGGCAAAATGACCATTTTACCCCTA
97519533 TGCTAGAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (30 bp):
TTTGGCAAAATGACCATTTTACCCCTAGAC
Found at i:97521919 original size:18 final size:20
Alignment explanation
Indices: 97521896--97521938 Score: 63
Period size: 18 Copynumber: 2.2 Consensus size: 20
97521886 TAAAATTGGA
*
97521896 AATTTTATAAA-TA-TTTTG
1 AATTTTAAAAACTATTTTTG
97521914 AATTTTAAAAACTATTTTTG
1 AATTTTAAAAACTATTTTTG
97521934 AATTT
1 AATTT
97521939 CTTTTTGTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 10 0.45
19 2 0.09
20 10 0.45
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.53
Consensus pattern (20 bp):
AATTTTAAAAACTATTTTTG
Found at i:97540419 original size:43 final size:43
Alignment explanation
Indices: 97540369--97540454 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 43
97540359 TTTGTGATTC
* *
97540369 CGATATGTGTTTACGA-GTAAGACC-CTGTCTGGGACAATGGCAT
1 CGATATGTGGTTAC-ATGTAAGACCAC-GTCTAGGACAATGGCAT
*
97540412 CGATATGTGGTTACATGTAAGACCACGTCTAGGACATTGGCAT
1 CGATATGTGGTTACATGTAAGACCACGTCTAGGACAATGGCAT
97540455 TGTATGATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 1 0.03
43 36 0.95
44 1 0.03
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (43 bp):
CGATATGTGGTTACATGTAAGACCACGTCTAGGACAATGGCAT
Found at i:97551432 original size:47 final size:44
Alignment explanation
Indices: 97551380--97551637 Score: 128
Period size: 47 Copynumber: 5.5 Consensus size: 44
97551370 TCGATGCGTA
* *
97551380 TCCCAGACACATCTTACACTGGCTATCTCTGTCGAGGCCGATG-TATG
1 TCCCAGACACGTCTTACACTGGCTATCTCTGT----GCCGATGCAATG
* *
97551427 TCCCAGACATGTCTTACACTAGCACTCATCTCTGTGCCGATGCAATG
1 TCCCAGACACGTCTTACACT-G-GCT-ATCTCTGTGCCGATGCAATG
* * * **
97551474 TCCCAGACATGGTCTTACACTGGCTATCATAGTATGGTTGATGC-ATG
1 TCCCAGACA-CGTCTTACACTGGCTATC-T-CTGT-GCCGATGCAATG
* * * * *
97551521 TCCCAGACATGTCTTACACTAGCCCT-TGTCTAGATGTCGATGCCATG
1 TCCCAGACACGTCTTACACT-G-GCTATCTCT-G-TGCCGATGCAATG
* * * *
97551568 TCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGAAGC-ATG
1 TCCCAGACA-CGTCTTACACTGGCTATC-T-CTGT-GCCGATGCAATG
* * *
97551615 TCCCAGGCATGTCTTACATTGGC
1 TCCCAGACACGTCTTACACTGGC
97551638 GCACAAATCA
Statistics
Matches: 168, Mismatches: 25, Indels: 37
0.73 0.11 0.16
Matches are distributed among these distances:
45 4 0.02
46 42 0.25
47 74 0.44
48 37 0.22
49 3 0.02
50 8 0.05
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (44 bp):
TCCCAGACACGTCTTACACTGGCTATCTCTGTGCCGATGCAATG
Found at i:97551529 original size:94 final size:93
Alignment explanation
Indices: 97551276--97551632 Score: 325
Period size: 94 Copynumber: 3.8 Consensus size: 93
97551266 GGATATATTA
* * * * * ** *
97551276 CCGATGCCATGTCCTAGATATGGTCTTACACTAGCTCTCATA-TACGCGTGTTGATGCATGTCCT
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTA--TG-GCCGATGCATGTCCC
*
97551340 AGACATGTCTTACACTAGCA-CAACTCT-TAG
63 AGACATGTCTTACACTAGCACCATCTCTGT-G
* * * ** * *
97551370 TCGATG-CGTATCCCAGACA-CATCTTACACTGGCTATC-TCTGTCGA-GGCCGATGTATGTCCC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AGT--ATGGCCGATGCATGTCCC
97551431 AGACATGTCTTACACTAGCACTCATCTCTGTG
63 AGACATGTCTTACACTAGCAC-CATCTCTGTG
* **
97551463 CCGATGCAATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGTTGATGCATGTCCCAGA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCAGA
* *
97551528 CATGTCTTACACTAGC-CCTTGTCTAGATG
66 CATGTCTTACACTAGCACCATCTCT-G-TG
* * * * * *
97551557 TCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCCAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCAGA
97551622 CATGTCTTACA
66 CATGTCTTACA
97551633 TTGGCGCACA
Statistics
Matches: 214, Mismatches: 36, Indels: 26
0.78 0.13 0.09
Matches are distributed among these distances:
91 32 0.15
92 20 0.09
93 25 0.12
94 117 0.55
95 19 0.09
96 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (93 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCAGA
CATGTCTTACACTAGCACCATCTCTGTG
Found at i:97552018 original size:30 final size:30
Alignment explanation
Indices: 97551977--97552034 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
97551967 AAATTTACAT
* *
97551977 CTTTGGTAAAATGACCATTTTGCCCCTAGA
1 CTTTGGCAAAATGACCATTTTACCCCTAGA
97552007 CTTTGGCAAAATGACCATTTTACCCCTA
1 CTTTGGCAAAATGACCATTTTACCCCTA
97552035 TGCCCAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTACCCCTAGA
Found at i:97560719 original size:30 final size:30
Alignment explanation
Indices: 97560685--97560745 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
97560675 TCCTTAACTC
97560685 AAACTTTTGCAAAATTACAATTTTACCCCT
1 AAACTTTTGCAAAATTACAATTTTACCCCT
* * * * *
97560715 AAACTTTTTCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTACCCCT
97560745 A
1 A
97560746 GGCTTGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.25, G:0.03, T:0.41
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTACCCCT
Found at i:97563169 original size:13 final size:13
Alignment explanation
Indices: 97563153--97563185 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
97563143 TTTAATTAAA
*
97563153 TTAGTTAATTAGT
1 TTAGATAATTAGT
97563166 TTAGATAATTAGT
1 TTAGATAATTAGT
97563179 TTA-ATAA
1 TTAGATAA
97563186 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:97567955 original size:40 final size:40
Alignment explanation
Indices: 97567857--97568199 Score: 485
Period size: 40 Copynumber: 8.6 Consensus size: 40
97567847 TCCTCGTTCA
* * * * *
97567857 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
97567896 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
97567936 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
97567976 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
97568016 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
97568056 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
97568096 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
97568136 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
97568176 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
97568200 CAGCATTCAA
Statistics
Matches: 280, Mismatches: 20, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
39 37 0.13
40 235 0.84
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:97583633 original size:17 final size:17
Alignment explanation
Indices: 97583611--97583683 Score: 78
Period size: 17 Copynumber: 4.4 Consensus size: 17
97583601 TTGAATCATC
97583611 TTATTTGATTTTTATTT
1 TTATTTGATTTTTATTT
*
97583628 TTATTT-ATTTATT-TAT
1 TTATTTGATTT-TTATTT
* *
97583644 TTATTTTATTCTTATTT
1 TTATTTGATTTTTATTT
*
97583661 TTCTTTGATTTTTATTT
1 TTATTTGATTTTTATTT
*
97583678 TCATTT
1 TTATTT
97583684 CAATTTTCTT
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
16 14 0.31
17 31 0.69
ACGTcount: A:0.18, C:0.04, G:0.03, T:0.75
Consensus pattern (17 bp):
TTATTTGATTTTTATTT
Found at i:97588856 original size:21 final size:22
Alignment explanation
Indices: 97588809--97588862 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 22
97588799 AAAGGAAGTG
*
97588809 AGAAAAAGAAATCGAGAGAAGA
1 AGAAAAAGAAATCGAGAGAAAA
* *
97588831 A-AAAAAGACATGGA-AGAAAA
1 AGAAAAAGAAATCGAGAGAAAA
*
97588851 AGAAAAGGAAAT
1 AGAAAAAGAAAT
97588863 AAAAAGAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
20 6 0.23
21 19 0.73
22 1 0.04
ACGTcount: A:0.67, C:0.04, G:0.24, T:0.06
Consensus pattern (22 bp):
AGAAAAAGAAATCGAGAGAAAA
Found at i:97590930 original size:18 final size:18
Alignment explanation
Indices: 97590907--97590971 Score: 94
Period size: 18 Copynumber: 3.6 Consensus size: 18
97590897 TGGCCCATTA
*
97590907 CAGTAACAATAATCAGTG
1 CAGTAACAGTAATCAGTG
* *
97590925 CAGTAACAGTAATCGGTA
1 CAGTAACAGTAATCAGTG
*
97590943 CAGTAACAGTAATTAGTG
1 CAGTAACAGTAATCAGTG
97590961 CAGTAACAGTA
1 CAGTAACAGTA
97590972 TACAAGTCCT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 41 1.00
ACGTcount: A:0.42, C:0.15, G:0.20, T:0.23
Consensus pattern (18 bp):
CAGTAACAGTAATCAGTG
Found at i:97599383 original size:40 final size:40
Alignment explanation
Indices: 97599301--97599376 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
97599291 TATTCGGATG
*
97599301 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACT
*
97599341 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
97599377 AGCTATATCC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACT
Found at i:97607367 original size:40 final size:40
Alignment explanation
Indices: 97607301--97607415 Score: 187
Period size: 40 Copynumber: 2.9 Consensus size: 40
97607291 ATTCGGATTA
97607301 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
97607340 ATATCCGGGCTAAGTCCCGAAGACATTTGTGCAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
97607380 ATAACCGGGCCAAGTCCCGAAGGCATTTGTGCGAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
97607416 CAAGTCCCGA
Statistics
Matches: 68, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
39 13 0.19
40 55 0.81
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:97607426 original size:26 final size:26
Alignment explanation
Indices: 97607390--97607441 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
97607380 ATAACCGGGC
*
97607390 CAAGTCCCGAAGGCATTTGTGCGAGT
1 CAAGTCCCGAAGGCAATTGTGCGAGT
97607416 CAAGTCCCGAAGGCAATTGTGCGAGT
1 CAAGTCCCGAAGGCAATTGTGCGAGT
97607442 TACTATAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.31, T:0.21
Consensus pattern (26 bp):
CAAGTCCCGAAGGCAATTGTGCGAGT
Found at i:97607461 original size:66 final size:66
Alignment explanation
Indices: 97607351--97607481 Score: 217
Period size: 66 Copynumber: 2.0 Consensus size: 66
97607341 TATCCGGGCT
* *
97607351 AAGTCCCGAAGACATTTGTGCAAGTTACTATAACCGGGCCAAGTCCCGAAGGCATTTGTGCGAGT
1 AAGTCCCGAAGACAATTGTGCAAGTTACTATAACCGGGCCAAGTCCCGAAGGCATTTGAGCGAGT
97607416 C
66 C
* * *
97607417 AAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 AAGTCCCGAAGACAATTGTGCAAGTTACTATAACCGGGCCAAGTCCCGAAGGCATTTGAGCGAGT
97607482 AGCTATATCC
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
66 60 1.00
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22
Consensus pattern (66 bp):
AAGTCCCGAAGACAATTGTGCAAGTTACTATAACCGGGCCAAGTCCCGAAGGCATTTGAGCGAGT
C
Found at i:97611955 original size:53 final size:54
Alignment explanation
Indices: 97611875--97612081 Score: 209
Period size: 53 Copynumber: 3.8 Consensus size: 54
97611865 TTCCTTTTTA
* * * *
97611875 AACTTACCATTGTCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * *
97611928 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** ** * * * * *
97611982 TAGTTTATAAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * *
97612037 AACTTACCAATGCCATGCCTTGGCATGGTCCTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
97612082 AAACTCTAAT
Statistics
Matches: 121, Mismatches: 31, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
53 45 0.37
54 36 0.30
55 40 0.33
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:97612030 original size:55 final size:53
Alignment explanation
Indices: 97611888--97612081 Score: 172
Period size: 55 Copynumber: 3.6 Consensus size: 53
97611878 TTACCATTGT
* * *
97611888 CATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCATTGC
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACAAATGC
* * * * ** * *
97611941 CATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGTAGTTTATAAATGC
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G-AACTCACAAATGC
* * * * * *
97611996 CATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAAAACTTACCAATGC
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACAAATGC
* * * *
97612050 CATGCCTTGGCATGGTCCTACTTGGTATCCTT
1 CATGTCTTGACATGGTCTTACATGGTATCCTT
97612082 AAACTCTAAT
Statistics
Matches: 110, Mismatches: 29, Indels: 3
0.77 0.20 0.02
Matches are distributed among these distances:
53 34 0.31
54 36 0.33
55 40 0.36
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.37
Consensus pattern (53 bp):
CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACAAATGC
Found at i:97614127 original size:8 final size:8
Alignment explanation
Indices: 97614116--97614151 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
97614106 GTAAAACGGT
97614116 AAAAGCTG
1 AAAAGCTG
97614124 AAAAGCTG
1 AAAAGCTG
*
97614132 AAAAGTTG
1 AAAAGCTG
*
97614140 AAAAGCCG
1 AAAAGCTG
97614148 AAAA
1 AAAA
97614152 ATAGGCTGTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.56, C:0.11, G:0.22, T:0.11
Consensus pattern (8 bp):
AAAAGCTG
Found at i:97614908 original size:34 final size:32
Alignment explanation
Indices: 97614828--97614924 Score: 104
Period size: 34 Copynumber: 2.9 Consensus size: 32
97614818 CTGATTGCAT
* * *
97614828 ACTGTACTGATACTGTAATGGGCTTAGGCCCC
1 ACTGTACTGTTACTGAAATGGGCTTAGGCCAC
* *
97614860 ACTAATACTGTTACTGAAATGGGCTTAGGCCAAG
1 ACT-GTACTGTTACTGAAATGGGCTTAGGCC-AC
* *
97614894 ACTGCTACTGTTACTGATATGGGCTAAGGCC
1 ACTG-TACTGTTACTGAAATGGGCTTAGGCC
97614925 CTAACTGAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
32 3 0.06
33 24 0.44
34 27 0.50
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.28
Consensus pattern (32 bp):
ACTGTACTGTTACTGAAATGGGCTTAGGCCAC
Found at i:97615731 original size:10 final size:10
Alignment explanation
Indices: 97615716--97615747 Score: 64
Period size: 10 Copynumber: 3.2 Consensus size: 10
97615706 CAGCTCAGTT
97615716 TGGCCCAAAA
1 TGGCCCAAAA
97615726 TGGCCCAAAA
1 TGGCCCAAAA
97615736 TGGCCCAAAA
1 TGGCCCAAAA
97615746 TG
1 TG
97615748 ACCTCGGCCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.38, C:0.28, G:0.22, T:0.12
Consensus pattern (10 bp):
TGGCCCAAAA
Found at i:97618676 original size:18 final size:18
Alignment explanation
Indices: 97618653--97618735 Score: 114
Period size: 18 Copynumber: 4.6 Consensus size: 18
97618643 TGGCCCATTA
*
97618653 CAGTAACAATAATCAGTG
1 CAGTAACAGTAATCAGTG
*
97618671 CAGTAACAGTAA-CCGATG
1 CAGTAACAGTAATCAG-TG
*
97618689 TAGTAACAGTAATCAGTG
1 CAGTAACAGTAATCAGTG
97618707 CAGTAACAGTAATCAGTG
1 CAGTAACAGTAATCAGTG
*
97618725 TAGTAACAGTA
1 CAGTAACAGTA
97618736 TACAAGTCTT
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
17 2 0.04
18 53 0.93
19 2 0.04
ACGTcount: A:0.41, C:0.16, G:0.20, T:0.23
Consensus pattern (18 bp):
CAGTAACAGTAATCAGTG
Found at i:97618702 original size:36 final size:36
Alignment explanation
Indices: 97618654--97618735 Score: 130
Period size: 36 Copynumber: 2.3 Consensus size: 36
97618644 GGCCCATTAC
*
97618654 AGTAACAATAATCAGTGCAGTAACAGTAACC-GATGT
1 AGTAACAGTAATCAGTGCAGTAACAGTAACCAG-TGT
*
97618690 AGTAACAGTAATCAGTGCAGTAACAGTAATCAGTGT
1 AGTAACAGTAATCAGTGCAGTAACAGTAACCAGTGT
97618726 AGTAACAGTA
1 AGTAACAGTA
97618736 TACAAGTCTT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
36 42 0.98
37 1 0.02
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.23
Consensus pattern (36 bp):
AGTAACAGTAATCAGTGCAGTAACAGTAACCAGTGT
Found at i:97620683 original size:19 final size:19
Alignment explanation
Indices: 97620656--97620696 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
97620646 TTTTTAAGGA
* *
97620656 TTTTTTTTAATTTAATAAG
1 TTTTATTTAAATTAATAAG
97620675 TTTTATTTAAATTAATAAG
1 TTTTATTTAAATTAATAAG
97620694 TTT
1 TTT
97620697 GCATATTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (19 bp):
TTTTATTTAAATTAATAAG
Found at i:97620803 original size:50 final size:52
Alignment explanation
Indices: 97620749--97620865 Score: 150
Period size: 50 Copynumber: 2.3 Consensus size: 52
97620739 AATAAAGTAA
**
97620749 TGCATTATGTAACTTTCATGTTAG-TTAAGTATGCATCA-TAAA-TAATGACT
1 TGCATTATGTAACTCCCATGTTAGTTTAAGTATGCATCATTAAATTAA-GACT
* * *
97620799 TGCATTATGTAACTCCCATGTTAGTTTAAGTCTGCATTATTAAATTAAGTCT
1 TGCATTATGTAACTCCCATGTTAGTTTAAGTATGCATCATTAAATTAAGACT
*
97620851 TGCATTAAGTAACTC
1 TGCATTATGTAACTC
97620866 ATCTATTTAT
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
50 22 0.38
51 12 0.21
52 21 0.36
53 3 0.05
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.40
Consensus pattern (52 bp):
TGCATTATGTAACTCCCATGTTAGTTTAAGTATGCATCATTAAATTAAGACT
Found at i:97621024 original size:9 final size:9
Alignment explanation
Indices: 97621006--97621078 Score: 52
Period size: 9 Copynumber: 8.6 Consensus size: 9
97620996 TTTATTTAAG
97621006 TTAA-GTGT
1 TTAATGTGT
97621014 TTAATGTGT
1 TTAATGTGT
97621023 TT--TGTGT
1 TTAATGTGT
97621030 TTAATAAGTGCT
1 TTAAT--GTG-T
*
97621042 TAAATGTGT
1 TTAATGTGT
*
97621051 TTAATATG-
1 TTAATGTGT
97621059 TT--TGT-T
1 TTAATGTGT
97621065 TTAATGTGT
1 TTAATGTGT
97621074 TTAAT
1 TTAAT
97621079 TGCAAGTGTC
Statistics
Matches: 51, Mismatches: 4, Indels: 19
0.69 0.05 0.26
Matches are distributed among these distances:
6 4 0.08
7 7 0.14
8 9 0.18
9 20 0.39
10 3 0.06
11 3 0.06
12 5 0.10
ACGTcount: A:0.25, C:0.01, G:0.19, T:0.55
Consensus pattern (9 bp):
TTAATGTGT
Found at i:97621182 original size:24 final size:24
Alignment explanation
Indices: 97621155--97621204 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
97621145 TTCAAGTGAT
97621155 TTTCGATTAAATACAAGGGAGACA
1 TTTCGATTAAATACAAGGGAGACA
* *
97621179 TTTCGGTTACATACAAGGGAGACA
1 TTTCGATTAAATACAAGGGAGACA
97621203 TT
1 TT
97621205 ATACATCATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (24 bp):
TTTCGATTAAATACAAGGGAGACA
Found at i:97629287 original size:44 final size:44
Alignment explanation
Indices: 97629238--97629321 Score: 168
Period size: 44 Copynumber: 1.9 Consensus size: 44
97629228 ATACGCTATA
97629238 TTAGTTTGAGAATTGACTAAATCATAGCTCTGATACCACTTATG
1 TTAGTTTGAGAATTGACTAAATCATAGCTCTGATACCACTTATG
97629282 TTAGTTTGAGAATTGACTAAATCATAGCTCTGATACCACT
1 TTAGTTTGAGAATTGACTAAATCATAGCTCTGATACCACT
97629322 AAATGTAACA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (44 bp):
TTAGTTTGAGAATTGACTAAATCATAGCTCTGATACCACTTATG
Found at i:97636950 original size:43 final size:42
Alignment explanation
Indices: 97636803--97636959 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 42
97636793 TGTGTTATCG
* * *
97636803 TGTAAGACCATGCCTGGGACATTGGCATCGACT-TGTGATTTACA
1 TGTAAGACCACGTCTGGGACAGTGGCATCGA-TAT-TGA-TTACA
* * * *
97636847 CGTAAGACCACGTCTGGGAC-GTTGGCATCG-TATTTGGTTTCG
1 TGTAAGACCACGTCTGGGACAG-TGGCATCGATA-TTGATTACA
97636889 TGTAAGACC-CTGTCTGGGACAGTGGCATCGATAATTGATTACA
1 TGTAAGACCAC-GTCTGGGACAGTGGCATCGAT-ATTGATTACA
*
97636932 TGTAAGACCACGTCTGGGACATTGGCAT
1 TGTAAGACCACGTCTGGGACAGTGGCAT
97636960 TGTACAAGAT
Statistics
Matches: 93, Mismatches: 12, Indels: 17
0.76 0.10 0.14
Matches are distributed among these distances:
41 1 0.01
42 29 0.31
43 35 0.38
44 28 0.30
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACAGTGGCATCGATATTGATTACA
Found at i:97637784 original size:7 final size:8
Alignment explanation
Indices: 97637763--97637794 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
97637753 TTGTAACGCC
97637763 CCAAAAAT
1 CCAAAAAT
97637771 CCAAAAAT
1 CCAAAAAT
97637779 CCAAAAAT
1 CCAAAAAT
97637787 CCAAAAAT
1 CCAAAAAT
97637795 TTTGAATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.62, C:0.25, G:0.00, T:0.12
Consensus pattern (8 bp):
CCAAAAAT
Found at i:97639311 original size:29 final size:28
Alignment explanation
Indices: 97639269--97639370 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 28
97639259 ATACGATTTA
* *
97639269 GGCCTAATGGGCCATACGAATGAGAATTG
1 GGCCTAGTGGGCCATAAGAAT-AGAATTG
* *
97639298 GGCCTAGCGGGCCATAAGAATATGAACTG
1 GGCCTAGTGGGCCATAAGAATA-GAATTG
**
97639327 GGCC-AGATGGGCCATTTGAATA-AGATTG
1 GGCCTAG-TGGGCCATAAGAATAGA-ATTG
97639355 GGCCTAGTGGGCCATA
1 GGCCTAGTGGGCCATA
97639371 TGCATGTATG
Statistics
Matches: 60, Mismatches: 9, Indels: 9
0.77 0.12 0.12
Matches are distributed among these distances:
27 1 0.02
28 18 0.30
29 41 0.68
ACGTcount: A:0.28, C:0.19, G:0.32, T:0.21
Consensus pattern (28 bp):
GGCCTAGTGGGCCATAAGAATAGAATTG
Found at i:97647013 original size:93 final size:93
Alignment explanation
Indices: 97646854--97647024 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
97646844 CCCATAAGCA
* * *
97646854 AACTCGGACTCAACTCAACGAGCTTGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
97646919 GAGCACGGATGCCTAGTTACATCTCTCG
66 GAGCACGGATGCCTAGTTACATCTCTCG
*
97646947 AACTCGGACTCAACTCAACGAG-TTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 AACTCGGACTCAACTCAACGAGCTT-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
**
97647011 CGAGTTCGGATGCC
65 CGAGCACGGATGCC
97647025 CAAACATCCT
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCACGGATGCCTAGTTACATCTCTCG
Found at i:97647015 original size:46 final size:46
Alignment explanation
Indices: 97646845--97647020 Score: 164
Period size: 46 Copynumber: 3.8 Consensus size: 46
97646835 TGTAACCGGC
* * * *
97646845 CCATAAGCAAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAG-TTCGGACATTTGCAT
* * ** * *
97646891 CCATGAGTGAACTCGGACTCAACTCAACGAGCACGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
97646941 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
97646984 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
97647021 TGCCCAAACA
Statistics
Matches: 104, Mismatches: 16, Indels: 20
0.74 0.11 0.14
Matches are distributed among these distances:
42 1 0.01
43 8 0.08
44 1 0.01
46 59 0.57
47 27 0.26
49 1 0.01
50 6 0.06
51 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:97647039 original size:46 final size:46
Alignment explanation
Indices: 97646854--97647039 Score: 145
Period size: 46 Copynumber: 4.0 Consensus size: 46
97646844 CCCATAAGCA
* *
97646854 AACTCGGACTCAACTCAACGAGCTT-GG--GCGT-TCGCATCCATGAGTG
1 AACTCGGACTCAACTCAACGAG-TTCGGATGCCTAT-ACATCC-T-AGTG
** *
97646900 AACTCGGACTCAACTCAACGAGCACGGATGCCTAGTTACATCTCT--CG
1 AACTCGGACTCAACTCAACGAGTTCGGATGCCTA--TACATC-CTAGTG
* * *
97646947 AACTCGGACTCAACTCAACGAGTTCGGA--CATTTGCATCCATAAGTG
1 AACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCC-T-AGTG
* *
97646993 AACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCTAGTG
1 AACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCTAGTG
97647039 A
1 A
97647040 CATGTCACTT
Statistics
Matches: 111, Mismatches: 16, Indels: 26
0.73 0.10 0.17
Matches are distributed among these distances:
42 1 0.01
43 6 0.05
45 2 0.02
46 58 0.52
47 28 0.25
48 9 0.08
50 5 0.05
51 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
AACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCTAGTG
Found at i:97649345 original size:16 final size:15
Alignment explanation
Indices: 97649322--97649357 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
97649312 CAAAATGTCG
*
97649322 AAAAGCCGAAGAGCT
1 AAAAGCCGAAAAGCT
97649337 AAAATGCCGAAAAGCT
1 AAAA-GCCGAAAAGCT
97649353 AAAAG
1 AAAAG
97649358 TTGGGCTACG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.53, C:0.17, G:0.22, T:0.08
Consensus pattern (15 bp):
AAAAGCCGAAAAGCT
Found at i:97649612 original size:29 final size:28
Alignment explanation
Indices: 97649580--97649684 Score: 97
Period size: 29 Copynumber: 3.7 Consensus size: 28
97649570 ATAATATGAT
97649580 TTGGGCCTAATGGGCCATATGAATGAGAA
1 TTGGGCCTAATGGGCCATATGAAT-AGAA
** *
97649609 TTGGGCCTACCGGGCCATAAGAATATGAA
1 TTGGGCCTAATGGGCCATATGAATA-GAA
* *
97649638 CTGGGCC-AGATGGGCCATTTGAATA-AGA
1 TTGGGCCTA-ATGGGCCATATGAATAGA-A
* *
97649666 TTCGGCCTAGTGGGCCATA
1 TTGGGCCTAATGGGCCATA
97649685 AGCATGTATG
Statistics
Matches: 60, Mismatches: 12, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
27 1 0.02
28 16 0.27
29 43 0.72
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATGAATAGAA
Found at i:97649661 original size:58 final size:57
Alignment explanation
Indices: 97649572--97649686 Score: 142
Period size: 58 Copynumber: 2.0 Consensus size: 57
97649562 GCATGAATAT
** * *
97649572 AATATGATTTGGGCCTAATGGGCCATATGAATGAGAATTGGGCCTACCGGGCCATAAG
1 AATATGAACTGGGCCTAATGGGCCATATGAATAAG-ATTCGGCCTACCGGGCCATAAG
* **
97649630 AATATGAACTGGGCC-AGATGGGCCATTTGAATAAGATTCGGCCTAGTGGGCCATAAG
1 AATATGAACTGGGCCTA-ATGGGCCATATGAATAAGATTCGGCCTACCGGGCCATAAG
97649687 CATGTATGTA
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
57 20 0.41
58 29 0.59
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (57 bp):
AATATGAACTGGGCCTAATGGGCCATATGAATAAGATTCGGCCTACCGGGCCATAAG
Found at i:97659521 original size:23 final size:24
Alignment explanation
Indices: 97659495--97659541 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
97659485 TTTCATTTTT
*
97659495 TGAATA-AATCAAGAAATC-ATCTA
1 TGAATACAA-CAACAAATCGATCTA
97659518 TGAATACAACAACAAATCGATCTA
1 TGAATACAACAACAAATCGATCTA
97659542 GATACGGTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.51, C:0.17, G:0.09, T:0.23
Consensus pattern (24 bp):
TGAATACAACAACAAATCGATCTA
Found at i:97662054 original size:30 final size:30
Alignment explanation
Indices: 97662008--97662067 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
97661998 TTCCCGAGCC
97662008 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
* *
97662038 TAGGGGCAAAAA-TGTAATTTTGCCAAAGTT
1 TAGGGG-AAAAAGTGTAATTATGCAAAAGTT
97662068 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAATTATGCAAAAGTT
Found at i:97668765 original size:43 final size:43
Alignment explanation
Indices: 97668650--97668755 Score: 160
Period size: 43 Copynumber: 2.5 Consensus size: 43
97668640 TTTAATACGT
*
97668650 TGGCATC-AGTATGTGATTACGAGTAAGACCCTATCTAGGACAG
1 TGGCATCGA-TATGTGATTACGAGTAAGACCCTGTCTAGGACAG
* * *
97668693 AGGCATTGATATGTGATTACGAGTAAGACCCTGTCTGGGACAG
1 TGGCATCGATATGTGATTACGAGTAAGACCCTGTCTAGGACAG
97668736 TGGCATCGATATGTGATTAC
1 TGGCATCGATATGTGATTAC
97668756 ATGCAAGACC
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
43 55 0.98
44 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.27
Consensus pattern (43 bp):
TGGCATCGATATGTGATTACGAGTAAGACCCTGTCTAGGACAG
Found at i:97668783 original size:43 final size:43
Alignment explanation
Indices: 97668650--97668784 Score: 125
Period size: 43 Copynumber: 3.1 Consensus size: 43
97668640 TTTAATACGT
* * *
97668650 TGGCATC-AGTATGTGATTACGAGTAAGACCCTATCTAG-GACAG
1 TGGCATCGA-TATGTGATTACGAGCAAGACCATGTC-AGAGACAG
* * * * * *
97668693 AGGCATTGATATGTGATTACGAGTAAGACCCTGTCTGGGACAG
1 TGGCATCGATATGTGATTACGAGCAAGACCATGTCAGAGACAG
97668736 TGGCATCGATATGTGATTAC-ATGCAAGACCATGTCAGAGAC-G
1 TGGCATCGATATGTGATTACGA-GCAAGACCATGTCAGAGACAG
97668778 TTGGCAT
1 -TGGCAT
97668785 TGTACGATAT
Statistics
Matches: 78, Mismatches: 10, Indels: 8
0.81 0.10 0.08
Matches are distributed among these distances:
42 3 0.04
43 74 0.95
44 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (43 bp):
TGGCATCGATATGTGATTACGAGCAAGACCATGTCAGAGACAG
Found at i:97681385 original size:29 final size:29
Alignment explanation
Indices: 97681352--97681434 Score: 114
Period size: 29 Copynumber: 2.9 Consensus size: 29
97681342 ATGACTATGT
97681352 ATGTGATTTGGGCCTAATGGGCCATACAA
1 ATGTGATTTGGGCCTAATGGGCCATACAA
* **
97681381 ATGTGATTTGGGCCCAATGGGCCATATGA
1 ATGTGATTTGGGCCTAATGGGCCATACAA
* *
97681410 ATGAGA-TTGGGCCTAGTGGGCCATA
1 ATGTGATTTGGGCCTAATGGGCCATA
97681435 TACATGTATG
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 17 0.35
29 31 0.65
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (29 bp):
ATGTGATTTGGGCCTAATGGGCCATACAA
Found at i:97686556 original size:22 final size:23
Alignment explanation
Indices: 97686531--97686576 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
97686521 CAACTAAACC
97686531 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
97686553 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
97686576 A
1 A
97686577 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:97686582 original size:23 final size:23
Alignment explanation
Indices: 97686538--97686582 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
97686528 ACCAATTCAA
*
97686538 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
97686561 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
97686583 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:97693456 original size:33 final size:33
Alignment explanation
Indices: 97693414--97693479 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
97693404 GGACTTACAA
97693414 TCAAGCTTGGAAGCTTGGAAAACCCTAGCCATG
1 TCAAGCTTGGAAGCTTGGAAAACCCTAGCCATG
97693447 TCAAGCTTGGAAGCTTGGAAAACCCTAGCCATG
1 TCAAGCTTGGAAGCTTGGAAAACCCTAGCCATG
97693480 GTTTCTTCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.21
Consensus pattern (33 bp):
TCAAGCTTGGAAGCTTGGAAAACCCTAGCCATG
Found at i:97695611 original size:24 final size:25
Alignment explanation
Indices: 97695566--97695612 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
97695556 ATTTTCCAAG
*
97695566 TTCCATTACTTATTCCACTAAAAGC
1 TTCCATTACATATTCCACTAAAAGC
* *
97695591 TTCCATT-CATATTTCAGTAAAA
1 TTCCATTACATATTCCACTAAAA
97695613 TTGGGTCGGA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 12 0.63
25 7 0.37
ACGTcount: A:0.34, C:0.23, G:0.04, T:0.38
Consensus pattern (25 bp):
TTCCATTACATATTCCACTAAAAGC
Found at i:97699518 original size:41 final size:40
Alignment explanation
Indices: 97699473--97699553 Score: 135
Period size: 41 Copynumber: 2.0 Consensus size: 40
97699463 AGCATTAGTA
*
97699473 AAGAGGACTCTTGAAAATCCTCTATTCAAAGACCTAAACC
1 AAGAGGACTCCTGAAAATCCTCTATTCAAAGACCTAAACC
*
97699513 NAAGAGGACTCCTGAAAATCCTCTATTTAAAGACCTAAACC
1 -AAGAGGACTCCTGAAAATCCTCTATTCAAAGACCTAAACC
97699554 CAACGACAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.40, C:0.25, G:0.12, T:0.22
Consensus pattern (40 bp):
AAGAGGACTCCTGAAAATCCTCTATTCAAAGACCTAAACC
Done.