Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 294 of 322
Found at i:97701025 original size:13 final size:14
Alignment explanation
Indices: 97701000--97701028 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
97700990 CTAGTCGAGG
97701000 TAAATTCGTGTAAT
1 TAAATTCGTGTAAT
97701014 TAAATT-GTGTAAT
1 TAAATTCGTGTAAT
97701027 TA
1 TA
97701029 TATGCTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.38, C:0.03, G:0.14, T:0.45
Consensus pattern (14 bp):
TAAATTCGTGTAAT
Found at i:97703765 original size:6 final size:6
Alignment explanation
Indices: 97703747--97703890 Score: 125
Period size: 6 Copynumber: 23.3 Consensus size: 6
97703737 AAGAAACATT
97703747 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * *
97703795 ATTAG- GTGACAGA ATCCGA ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
* * *
97703845 ATCAAA ATCAGA ATCAGT ATCAAGTA A-CAGA ATCTAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATC-AG-A ATCAGA ATC-AGA ATCAGA AT
97703891 GTGAATGCAA
Statistics
Matches: 112, Mismatches: 14, Indels: 24
0.75 0.09 0.16
Matches are distributed among these distances:
5 6 0.05
6 89 0.79
7 14 0.12
8 3 0.03
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:97703844 original size:37 final size:37
Alignment explanation
Indices: 97703767--97703878 Score: 137
Period size: 37 Copynumber: 3.2 Consensus size: 37
97703757 GAATCAGAAT
* * * *
97703767 CAGAATCAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCCGAATCAGAATCAGAATCAGTATCAGGTAA
97703804 CAGAATCCGAATCAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCCGAATCAGAATCAGAATCAGTATCAGGTAA
*
97703841 CAGAAT-C--A--A-AATCAGAATCAGTATCAAGTAA
1 CAGAATCCGAATCAGAATCAGAATCAGTATCAGGTAA
97703872 CAGAATC
1 CAGAATC
97703879 TAAAATCAGA
Statistics
Matches: 69, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
31 27 0.39
32 1 0.01
34 1 0.01
36 1 0.01
37 39 0.57
ACGTcount: A:0.46, C:0.17, G:0.18, T:0.19
Consensus pattern (37 bp):
CAGAATCCGAATCAGAATCAGAATCAGTATCAGGTAA
Found at i:97703847 original size:31 final size:30
Alignment explanation
Indices: 97703747--97703890 Score: 143
Period size: 31 Copynumber: 4.7 Consensus size: 30
97703737 AAGAAACATT
*
97703747 ATCAGAA-CTAGAATCAGAATCAGAATCAGA
1 ATCAGAATC-AGAATCAGAATCAGTATCAGA
*
97703777 ATCAGAATCAGAATCAGAATTAGGTGA-CAGA
1 ATCAGAATCAGAATCAGAATCA-GT-ATCAGA
*
97703808 ATCCGAATCAGAATCAGAATCAGTATCAGGTA
1 ATCAGAATCAGAATCAGAATCAGTATCA-G-A
*
97703840 A-CAGAATCAAAATCAGAATCAGTATCAAGTA
1 ATCAGAATCAGAATCAGAATCAGTATC-AG-A
*
97703871 A-CAGAATCTAAAATCAGAAT
1 ATCAGAATC-AGAATCAGAAT
97703891 GTGAATGCAA
Statistics
Matches: 100, Mismatches: 6, Indels: 14
0.83 0.05 0.12
Matches are distributed among these distances:
29 1 0.01
30 23 0.23
31 61 0.61
32 15 0.15
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.19
Consensus pattern (30 bp):
ATCAGAATCAGAATCAGAATCAGTATCAGA
Found at i:97704070 original size:27 final size:26
Alignment explanation
Indices: 97704027--97704113 Score: 68
Period size: 27 Copynumber: 3.2 Consensus size: 26
97704017 GCTCAGTTAT
* **
97704027 CAGATATTGTGATAGAGTTACCAGATA
1 CAGATATTGTGACAGAGCCACCAGA-A
* *
97704054 TAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGACAGAGCCACCAGAA
* *
97704080 CAGATATT-TGTAGCATAGCCACTAGAAA
1 CAGATATTGTG-A-CAGAGCCACCAG-AA
97704108 CAGATA
1 CAGATA
97704114 ATGTAGCAAA
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
25 2 0.04
26 8 0.17
27 30 0.62
28 8 0.17
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (26 bp):
CAGATATTGTGACAGAGCCACCAGAA
Found at i:97704118 original size:27 final size:26
Alignment explanation
Indices: 97704055--97704129 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 26
97704045 TACCAGATAT
* * *
97704055 AGATATTGTGGCAGAGCCACCAGAAC
1 AGATATTGTAGCAAAGCCACTAGAAC
*
97704081 AGATATTTGTAGCATAGCCACTAGAAAC
1 AGATA-TTGTAGCAAAGCCACTAG-AAC
*
97704109 AGATAATGTAGCAAAGCCACT
1 AGATATTGTAGCAAAGCCACT
97704130 TAACAGAATA
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
26 5 0.12
27 29 0.69
28 8 0.19
ACGTcount: A:0.39, C:0.20, G:0.21, T:0.20
Consensus pattern (26 bp):
AGATATTGTAGCAAAGCCACTAGAAC
Found at i:97704315 original size:22 final size:21
Alignment explanation
Indices: 97704287--97704351 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 21
97704277 GCAAATACGT
97704287 TTGGCACACAGCCATAATCAGG
1 TTGGCACA-AGCCATAATCAGG
*
97704309 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACA-AGCCATAAT-CAGG
*
97704331 TTGACACGAAGCCATAATCAG
1 TTGGCAC-AAGCCATAATCAG
97704352 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
21 2 0.06
22 31 0.86
23 3 0.08
ACGTcount: A:0.32, C:0.23, G:0.25, T:0.20
Consensus pattern (21 bp):
TTGGCACAAGCCATAATCAGG
Found at i:97704835 original size:27 final size:27
Alignment explanation
Indices: 97704778--97705026 Score: 311
Period size: 27 Copynumber: 9.3 Consensus size: 27
97704768 GGGGCAAAAT
* * * *
97704778 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
97704804 TGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
97704831 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
97704858 GGTAATTCTACCCTACAAGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
97704885 GATAATTCCACCCTACAGAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
97704912 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
97704939 GGTAATTCTAACCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
97704966 GGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
97704993 GATAATTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
97705020 GGTAATT
1 GGTAATT
97705027 TTTTAAATCA
Statistics
Matches: 189, Mismatches: 33, Indels: 1
0.85 0.15 0.00
Matches are distributed among these distances:
26 13 0.07
27 176 0.93
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:97705078 original size:27 final size:27
Alignment explanation
Indices: 97705008--97705080 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 27
97704998 TTCTACCCTA
* * *
97705008 CAAGGGTATTTTGGTAATTTTTTAAAT
1 CAAGGGTAATTTGGTAATTCTGTAAAT
****
97705035 CAAGGGTAAAACAGTAATTCTGTAAAT
1 CAAGGGTAATTTGGTAATTCTGTAAAT
*
97705062 CAAGGGTACTTTGGTAATT
1 CAAGGGTAATTTGGTAATT
97705081 TTACAAGTCG
Statistics
Matches: 34, Mismatches: 12, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.37
Consensus pattern (27 bp):
CAAGGGTAATTTGGTAATTCTGTAAAT
Found at i:97705094 original size:27 final size:26
Alignment explanation
Indices: 97705059--97705353 Score: 155
Period size: 27 Copynumber: 11.0 Consensus size: 26
97705049 TAATTCTGTA
* * *
97705059 AATCAAGGGTACTTTGGTAATTTTAC
1 AATCGAGGGTATTTTGATAATTTTAC
**
97705085 AAGTCGAGGGTATTTCAATAATTTTAC
1 AA-TCGAGGGTATTTTGATAATTTTAC
* * * *
97705112 AGGTCGAAGGTATTTTAATAATTTCAC
1 A-ATCGAGGGTATTTTGATAATTTTAC
* *
97705139 AAATC-AGGGATGTTTTGGTAATTTTAC
1 -AATCGAGGG-TATTTTGATAATTTTAC
* *
97705166 AAACTAGGGGTATTTTGATAATTTTAC
1 AATCGA-GGGTATTTTGATAATTTTAC
* *
97705193 AAACGAGGGGTATTTTGGTAATTTTAC
1 AATCGA-GGGTATTTTGATAATTTTAC
* * * * *
97705220 AAACCAGGGGTATTTTGGTGATTTTAT
1 AATCGA-GGGTATTTTGATAATTTTAC
* *
97705247 AAACAAAGGGTATTTT-AGTAATTTTAC
1 AATC-GAGGGTATTTTGA-TAATTTTAC
* * *
97705274 AAACCAGGGGTATTTTGGTAATTTTGTA-
1 AATCGA-GGGTATTTTGATAA-TTT-TAC
* * * *
97705302 AACCAAGGGCATTTTGGTAATTTTAC
1 AATCGAGGGTATTTTGATAATTTTAC
* * * *
97705328 AAACCAGGGGTATTTTGGTGATTTTA
1 AATCGA-GGGTATTTTGATAATTTTA
97705354 TAAACCAAGG
Statistics
Matches: 219, Mismatches: 36, Indels: 27
0.78 0.13 0.10
Matches are distributed among these distances:
25 2 0.01
26 16 0.07
27 187 0.85
28 12 0.05
29 2 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.38
Consensus pattern (26 bp):
AATCGAGGGTATTTTGATAATTTTAC
Found at i:97705329 original size:108 final size:108
Alignment explanation
Indices: 97705146--97705412 Score: 408
Period size: 108 Copynumber: 2.5 Consensus size: 108
97705136 CACAAATCAG
* * * ** * * *
97705146 GGATGTTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACGAGGGGTATTTTGG
1 GGATATTTTAGTAATTTTACAAACCAGGGGTATTTTGATAATTTTGTAAACCAAGGGCATTTTGG
97705211 TAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACAAA
66 TAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACAAA
* *
97705254 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGCATTTTGG
1 GGATATTTTAGTAATTTTACAAACCAGGGGTATTTTGATAATTTTGTAAACCAAGGGCATTTTGG
*
97705319 TAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
66 TAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACAAA
* * *
97705362 GGATATTCTAGTAATTTTACAAACCAGGGGTATTTTGTTAATTTGGTAAAC
1 GGATATTTTAGTAATTTTACAAACCAGGGGTATTTTGATAATTTTGTAAAC
97705413 TAAAGTATTA
Statistics
Matches: 144, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
108 144 1.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (108 bp):
GGATATTTTAGTAATTTTACAAACCAGGGGTATTTTGATAATTTTGTAAACCAAGGGCATTTTGG
TAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACAAA
Found at i:97705412 original size:27 final size:27
Alignment explanation
Indices: 97705120--97705405 Score: 347
Period size: 27 Copynumber: 10.6 Consensus size: 27
97705110 ACAGGTCGAA
** * *
97705120 GGTATTTTAATAATTTCACAAATCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
* * *
97705147 GATGTTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
* *
97705174 GGTATTTTGATAATTTTACAAACGAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
97705201 GGTATTTTGGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
* * * *
97705228 GGTATTTTGGTGATTTTATAAACAAAG
1 GGTATTTTGGTAATTTTACAAACCAGG
*
97705255 GGTATTTTAGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
** *
97705282 GGTATTTTGGTAATTTTGTAAACCAAG
1 GGTATTTTGGTAATTTTACAAACCAGG
*
97705309 GGCATTTTGGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
* * *
97705336 GGTATTTTGGTGATTTTATAAACCAAG
1 GGTATTTTGGTAATTTTACAAACCAGG
* * *
97705363 GATATTCTAGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
*
97705390 GGTATTTTGTTAATTT
1 GGTATTTTGGTAATTT
97705406 GGTAAACTAA
Statistics
Matches: 215, Mismatches: 44, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 215 1.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACCAGG
Found at i:97709130 original size:40 final size:40
Alignment explanation
Indices: 97709083--97709385 Score: 455
Period size: 40 Copynumber: 7.6 Consensus size: 40
97709073 CTACTTGCTC
* *
97709083 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* * *
97709123 AATGCCTTCGGGACTTAGCTCGAATATAGTAGCTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* *
97709163 AATGCCTTCGGGACTTAGCCCGGATGTAATAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
*
97709203 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCCCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* * * *
97709243 AATGCCTTCGGGACTTAGCCCGAATGTAATAACTCGCATA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
97709283 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* * *
97709323 AATGCCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACA
97709363 AATGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
97709386 TTATCATCCG
Statistics
Matches: 237, Mismatches: 25, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
39 1 0.00
40 236 1.00
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
Found at i:97715807 original size:27 final size:27
Alignment explanation
Indices: 97715777--97715954 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
97715767 ATATTGAGTC
* * * *
97715777 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
97715804 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
97715831 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
97715859 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
97715886 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
97715913 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
97715940 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
97715955 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:97715916 original size:82 final size:81
Alignment explanation
Indices: 97715798--97715953 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
97715788 TGCTATATAA
* *
97715798 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
97715863 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
97715880 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
97715944 CACTTAGTGC
65 CACTTAGTGC
97715954 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:97723996 original size:27 final size:27
Alignment explanation
Indices: 97723966--97724143 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
97723956 ATATTGAGCC
* *
97723966 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
97723993 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
97724020 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
97724048 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
97724075 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
97724102 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
97724129 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
97724144 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:97724078 original size:55 final size:54
Alignment explanation
Indices: 97723966--97724143 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
97723956 ATATTGAGCC
* * * * *
97723966 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
97724020 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
97724075 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
97724129 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
97724144 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:97728899 original size:40 final size:40
Alignment explanation
Indices: 97728702--97728885 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
97728692 CGAATGATGT
* * * * *
97728702 CCGGGCTAAGCCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * * *
97728742 CTGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
* *
97728782 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
97728821 CCGGGTTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
97728861 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
97728886 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
39 32 0.27
40 81 0.68
41 7 0.06
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:97728916 original size:79 final size:79
Alignment explanation
Indices: 97728753--97728918 Score: 185
Period size: 79 Copynumber: 2.1 Consensus size: 79
97728743 TGGACTAAGA
* **
97728753 TCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTA
1 TCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTA
**
97728818 AAACCGGGTTAGGT
66 AAACCGGGTTAAAT
* * * *
97728832 CCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAG
1 TCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-
* *
97728895 CTATATCC-GGTTAAAT
63 CTAAAACCGGGTTAAAT
97728911 TCCGAAGG
1 TCCGAAGG
97728919 TACGTGATTC
Statistics
Matches: 72, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.65
80 23 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTA
AAACCGGGTTAAAT
Found at i:97748013 original size:85 final size:85
Alignment explanation
Indices: 97747884--97748742 Score: 1700
Period size: 85 Copynumber: 10.1 Consensus size: 85
97747874 TATTTTATTG
*
97747884 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
97747949 TAGCCATAACAGCTTGTCCA
66 TAGCCATAACAGCTTGTCCA
97747969 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
97748034 TAGCCATAACAGCTTGTCCA
66 TAGCCATAACAGCTTGTCCA
97748054 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
97748119 TAGCCATAACAGCTTGTCCA
66 TAGCCATAACAGCTTGTCCA
97748139 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
97748204 TAGCCATAACAGCTTGTCCA
66 TAGCCATAACAGCTTGTCCA
97748224 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
97748289 TAGCCATAACAGCTTGTCCA
66 TAGCCATAACAGCTTGTCCA
97748309 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
97748374 TAGCCATAACAGCTTGTCCA
66 TAGCCATAACAGCTTGTCCA
97748394 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
97748459 TAGCCATAACAGCTTGTCCA
66 TAGCCATAACAGCTTGTCCA
97748479 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
97748544 TAGCCATAACAGCTTGTCCA
66 TAGCCATAACAGCTTGTCCA
97748564 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
97748629 TAGCCATAACAGCTTGTCCA
66 TAGCCATAACAGCTTGTCCA
97748649 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
*
97748714 TAGCCATAACATCTTGTCCA
66 TAGCCATAACAGCTTGTCCA
97748734 CCCATGCTC
1 CCCATGCTC
97748743 ATGGCCGGCC
Statistics
Matches: 772, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 772 1.00
ACGTcount: A:0.27, C:0.26, G:0.09, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACAGCTTGTCCA
Found at i:97749787 original size:16 final size:17
Alignment explanation
Indices: 97749755--97749787 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
97749745 CATCAATAAG
97749755 GGTTTTCGATGAAAACAT
1 GGTTTTCGA-GAAAACAT
97749773 GGTTTTCGA-AAAACA
1 GGTTTTCGAGAAAACA
97749788 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.30
Consensus pattern (17 bp):
GGTTTTCGAGAAAACAT
Found at i:97750567 original size:51 final size:51
Alignment explanation
Indices: 97750491--97750592 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 51
97750481 CACCTATTGC
*
97750491 TTAGTCCTTAATGTTTTACAATGTTTTCCAATTAGTAGAATTTCCTTACAT
1 TTAGTCCTTAATGTTTTACAATGTTTTCCAATTAGCAGAATTTCCTTACAT
97750542 TTAGTCCTTAATGTTTTACAATGTTTTCCAATTAGCAGAATTTCCTTACAT
1 TTAGTCCTTAATGTTTTACAATGTTTTCCAATTAGCAGAATTTCCTTACAT
97750593 CATTACTATG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.27, C:0.17, G:0.10, T:0.46
Consensus pattern (51 bp):
TTAGTCCTTAATGTTTTACAATGTTTTCCAATTAGCAGAATTTCCTTACAT
Found at i:97750881 original size:5 final size:5
Alignment explanation
Indices: 97750871--97750897 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
97750861 GTCTGATGTA
97750871 TTATT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TT
97750898 TTAGTACCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:97752190 original size:23 final size:21
Alignment explanation
Indices: 97752148--97752190 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
97752138 ATCGAGAACT
* *
97752148 TTAGAAATTTTTTTACAACAC
1 TTAGAAATTTTTCTAAAACAC
97752169 TTAGAAAATTTTTGCTAAAACA
1 TTAG-AAATTTTT-CTAAAACA
97752191 GTGGTAACAC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 4 0.22
22 8 0.44
23 6 0.33
ACGTcount: A:0.42, C:0.12, G:0.07, T:0.40
Consensus pattern (21 bp):
TTAGAAATTTTTCTAAAACAC
Found at i:97753167 original size:10 final size:10
Alignment explanation
Indices: 97753152--97753180 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
97753142 GTGTGATAGG
97753152 ATCTCCGGTA
1 ATCTCCGGTA
97753162 ATCTCCGGTA
1 ATCTCCGGTA
97753172 ATCTCCGGT
1 ATCTCCGGT
97753181 TGATAGTGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.17, C:0.31, G:0.21, T:0.31
Consensus pattern (10 bp):
ATCTCCGGTA
Found at i:97753924 original size:42 final size:42
Alignment explanation
Indices: 97753761--97753924 Score: 159
Period size: 42 Copynumber: 3.9 Consensus size: 42
97753751 TACTGTACCA
* ** *
97753761 ATGCCATGTCCCAGATATGGTCTTACATATAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
* * * * * *
97753803 ATGCCAATAGCCCAGCTATAGCCTTACCCGAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGTAATCTCATATCG
* * * * *
97753846 ATGTCATATCCAAGATATGGTCTTATACG-AAGTCTCACATTG
1 ATGCCATATCCCAGATATGGTCTTACACGTAA-TCTCATATCG
*
97753888 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
97753925 GTAACCCTAA
Statistics
Matches: 95, Mismatches: 24, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
41 2 0.02
42 60 0.63
43 33 0.35
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
Found at i:97757719 original size:46 final size:45
Alignment explanation
Indices: 97757620--97757730 Score: 136
Period size: 46 Copynumber: 2.4 Consensus size: 45
97757610 TGATATGTGT
* *
97757620 GCTAGTGTAAGACATGTCTGGTACATGCATCAGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAG-CACATTACGAGA
*
97757666 GCCAGTGTAAGACATGTCTGGGACATGCATC-G-ACATTGAAACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACATT---ACGAGA
*
97757712 TCTAGTGTAAGACATGTCT
1 GCTAGTGTAAGACATGTCT
97757731 AGGAGCATCA
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
43 5 0.09
45 1 0.02
46 51 0.89
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACATTACGAGA
Found at i:97757865 original size:49 final size:48
Alignment explanation
Indices: 97757803--97758073 Score: 271
Period size: 49 Copynumber: 5.6 Consensus size: 48
97757793 TGTTGTGTGT
* *
97757803 CAGTTTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTGATAGATGAAAGC
* * * *
97757852 CAGTGTAAGACCTGTCTGGGGCATGACATC-AGCCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGA-CCT-GATAGATGAAAGC
* * *
97757901 CAGTGTAAGACCTGTCTGGGACATGGTATCGAGACC-GATAGGTGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATC--GACCTGATAGATGAAAGC
* * * * * *
97757950 TAGTGTAAGACCTATCTAGGACATGGCATCGGCCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCT-GATAGATGAAAGC
* * **
97757999 CAGTGTAAGACCTGTCTAGGACATGGCATCGACTTTGAT--ATGCTAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTGATAGATGAAAGC
97758046 CAGTGTAAGACCATGTCTGGGACATGGC
1 CAGTGTAAGACC-TGTCTGGGACATGGC
97758074 GTCGGCATCT
Statistics
Matches: 183, Mismatches: 30, Indels: 19
0.79 0.13 0.08
Matches are distributed among these distances:
47 20 0.11
48 17 0.09
49 142 0.78
50 1 0.01
51 2 0.01
52 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTGATAGATGAAAGC
Found at i:97757910 original size:142 final size:135
Alignment explanation
Indices: 97757668--97757926 Score: 322
Period size: 142 Copynumber: 1.9 Consensus size: 135
97757658 TTATGAGAGC
* * *
97757668 CAGTGTAAGACATGTCTGGGACATGCATCGACATTGAAACGAGATCTAGTGTAAGACATGTCTAG
1 CAGTGTAAGACATGTCTGGGACATGCATCGACACTGAAACGAGAGCCAGTGTAAGACATGTCTAG
*
97757733 GAGCATCAGCCTCGAGATATGCAAGCTAGTATAAGACCTGTATAGGACATGGCGTCAGCTTGTTG
66 GAGCATCAGCCTCGAGATATGAAAGCTAGTATAAGACCTGTATAGGACATGGCGTCAGCTTGTTG
97757798 TGTGT
131 TGTGT
* * * *
97757803 CAGTTTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAGAGCCAGTGTAAGACCTGTC
1 CAGTGTAAGACATGTCTGGGACAT-GCATCGACACTGA-A-ACGAGAGCCAGTGTAAGACATGTC
* * * * *
97757868 TGGGGCATGACATCAGCCTCGATATATGAAAG-TCAGTGTAAGACCTGTCTGGGACATGG
63 T-AGG-A-G-CATCAGCCTCGAGATATGAAAGCT-AGTATAAGACCTGTATAGGACATGG
97757927 TATCGAGACC
Statistics
Matches: 103, Mismatches: 13, Indels: 9
0.82 0.10 0.07
Matches are distributed among these distances:
135 22 0.21
136 12 0.12
137 1 0.01
138 21 0.20
139 2 0.02
140 1 0.01
141 2 0.02
142 42 0.41
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (135 bp):
CAGTGTAAGACATGTCTGGGACATGCATCGACACTGAAACGAGAGCCAGTGTAAGACATGTCTAG
GAGCATCAGCCTCGAGATATGAAAGCTAGTATAAGACCTGTATAGGACATGGCGTCAGCTTGTTG
TGTGT
Found at i:97757914 original size:98 final size:98
Alignment explanation
Indices: 97757801--97758071 Score: 375
Period size: 98 Copynumber: 2.8 Consensus size: 98
97757791 CTTGTTGTGT
*
97757801 GTCAGTTTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAGAGCCAGTGTAAGACCTG
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAGAGCCAGTGTAAGACCTG
*
97757866 TCTGGGGCATGACATCAGCCTCGATATATGAAA
66 TCTGGGACATGACATCAGCCTCGATATATGAAA
* * * * * *
97757899 GTCAGTGTAAGACCTGTCTGGGACATGGTATCGAGACCGATAGGTGAGAGCTAGTGTAAGACCTA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAGAGCCAGTGTAAGACCTG
* * *
97757964 TCTAGGACATGGCATCGGCCTCGATATATGAAA
66 TCTGGGACATGACATCAGCCTCGATATATGAAA
* ** **
97757997 GTCAGTGTAAGACCTGTCTAGGACATGGCATCGACTTTGAT--ATGCTAGCCAGTGTAAGACCAT
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAGAGCCAGTGTAAGACC-T
97758060 GTCTGGGACATG
65 GTCTGGGACATG
97758072 GCGTCGGCAT
Statistics
Matches: 149, Mismatches: 23, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
96 16 0.11
97 11 0.07
98 122 0.82
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (98 bp):
GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAGAGCCAGTGTAAGACCTG
TCTGGGACATGACATCAGCCTCGATATATGAAA
Found at i:97758012 original size:147 final size:146
Alignment explanation
Indices: 97757808--97758072 Score: 347
Period size: 147 Copynumber: 1.8 Consensus size: 146
97757798 TGTGTCAGTT
* * * * *
97757808 TAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAGAGCCAGTGTAAGACCTGTCTGGGG
1 TAAGACCTATCTAGGACATGGCATCGACACTGATAGATGAAAGCCAGTGTAAGACCTGTCTAGGA
* *
97757873 CATGACATCAGCCTCGAT-ATATGAAAGTCAGTGTAAGACC-TGTCTGGGACATGGTATCGAGAC
66 CATGACATC-GACT--ATGATATGAAAGCCAGTGTAAGACCATGTCTGGGACATGGTATCGAGAC
97757936 CGATAGGTGAGAGCTAGTG
128 CGATAGGTGAGAGCTAGTG
* * *
97757955 TAAGACCTATCTAGGACATGGCATCGGC-CTCGATATATGAAAGTCAGTGTAAGACCTGTCTAGG
1 TAAGACCTATCTAGGACATGGCATCGACACT-GATAGATGAAAGCCAGTGTAAGACCTGTCTAGG
* * **
97758019 ACATGGCATCGACTTTGATATGCTAGCCAGTGTAAGACCATGTCTGGGACATGG
65 ACATGACATCGACTATGATATGAAAGCCAGTGTAAGACCATGTCTGGGACATGG
97758073 CGTCGGCATC
Statistics
Matches: 101, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
144 1 0.01
145 19 0.19
146 19 0.19
147 62 0.61
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (146 bp):
TAAGACCTATCTAGGACATGGCATCGACACTGATAGATGAAAGCCAGTGTAAGACCTGTCTAGGA
CATGACATCGACTATGATATGAAAGCCAGTGTAAGACCATGTCTGGGACATGGTATCGAGACCGA
TAGGTGAGAGCTAGTG
Found at i:97765107 original size:27 final size:27
Alignment explanation
Indices: 97765076--97765253 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
97765066 TAAATTGTAC
97765076 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
97765103 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
97765129 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
97765157 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
97765185 GGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
97765212 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
97765239 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
97765254 GACTCGATAT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 107 0.82
28 24 0.18
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:97765190 original size:82 final size:81
Alignment explanation
Indices: 97765077--97765232 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
97765067 AAATTGTACA
*
97765077 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
97765141 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
97765158 GCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTGGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
97765223 TGCGAGTTGA
65 TGCGAATTGA
97765233 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:97765244 original size:82 final size:81
Alignment explanation
Indices: 97765073--97765253 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
97765063 GATTAAATTG
*
97765073 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAATGAATATGATGCACTAA
97765138 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
97765154 TGCGGCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTGGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
97765218 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
97765236 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
97765254 GACTCGATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:97769641 original size:141 final size:138
Alignment explanation
Indices: 97769393--97769649 Score: 329
Period size: 141 Copynumber: 1.8 Consensus size: 138
97769383 TGTGATAGTC
* * * * *
97769393 TAAGACATGTCTGGGACATGCATCGGCATTGAAACGAGAGCTAATGTAAGACATGTCTAGAACAT
1 TAAGACATGTCTGGGACATGCATAGGCACTGAAACGAGAGCCAAAGTAAGACATGTCTAGAACAG
*
97769458 ACATCAGCCTCGAGATATGCAAGCTAGTATAAGACCTGTCTGGGACATGGCGTCAGCTTGTTGTG
66 ACATCAGCCTCGAGATATGAAAGCTAGTATAAGACCTGTCTGGGACATGGCGTCAGCTTGTTGTG
97769523 TGTCAGTT
131 TGTCAGTT
* * * *
97769531 TAAGACCTGTCTGGGACATGGCATAGGCACTGATAGA-GAGAGCCAAAGTAAGACCTGTCTGGGA
1 TAAGACATGTCTGGGACAT-GCATAGGCACTGA-A-ACGAGAGCCAAAGTAAGACATGTCTAGAA
* * * *
97769595 CACGGCATCAGCCTCGATATATGAAAG-TCAGTGTAAGACTTGTCTGGGACATGGC
63 CA-GACATCAGCCTCGAGATATGAAAGCT-AGTATAAGACCTGTCTGGGACATGGC
97769650 ATCGACAACG
Statistics
Matches: 100, Mismatches: 14, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
138 18 0.18
139 11 0.11
140 26 0.26
141 45 0.45
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (138 bp):
TAAGACATGTCTGGGACATGCATAGGCACTGAAACGAGAGCCAAAGTAAGACATGTCTAGAACAG
ACATCAGCCTCGAGATATGAAAGCTAGTATAAGACCTGTCTGGGACATGGCGTCAGCTTGTTGTG
TGTCAGTT
Found at i:97769707 original size:98 final size:97
Alignment explanation
Indices: 97769524--97769753 Score: 354
Period size: 98 Copynumber: 2.4 Consensus size: 97
97769514 CTTGTTGTGT
* * * *
97769524 GTCAGTTTAAGACCTGTCTGGGACATGGCATAGGCACTGATAGAGAGAGCCAAAGTAAGACCTGT
1 GTCAGTGTAAGACTTGTCTGGGACATGGCATCGACACTGATAGAGAGAGCCAAAGTAAGACCTGT
*
97769589 CTGGGACACGGCATCAGCCTCGATATATGAAA
66 CTGGGACACGGCATCAGCCTCAATATATGAAA
**
97769621 GTCAGTGTAAGACTTGTCTGGGACATGGCATCGACAAC-GATAGATGAGAGCCAGTGTAAGACCT
1 GTCAGTGTAAGACTTGTCTGGGACATGGCATCGAC-ACTGATAGA-GAGAGCCAAAGTAAGACCT
*
97769685 GTCTGGGACACGGCATCGGCCTCAATATATGAAA
64 GTCTGGGACACGGCATCAGCCTCAATATATGAAA
*
97769719 GTCAGTGTAAGACTTGTCTGGGACATGACATCGAC
1 GTCAGTGTAAGACTTGTCTGGGACATGGCATCGAC
97769754 TTTGATATGC
Statistics
Matches: 122, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
97 37 0.30
98 85 0.70
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (97 bp):
GTCAGTGTAAGACTTGTCTGGGACATGGCATCGACACTGATAGAGAGAGCCAAAGTAAGACCTGT
CTGGGACACGGCATCAGCCTCAATATATGAAA
Found at i:97769751 original size:49 final size:49
Alignment explanation
Indices: 97769524--97769743 Score: 246
Period size: 49 Copynumber: 4.5 Consensus size: 49
97769514 CTTGTTGTGT
* * * * *
97769524 GTCAGTTTAAGACCTGTCTGGGACATGGCATAGGCACT-GATAGA-GAGA
1 GTCAGTGTAAGACCTGTCTGGGACACGGCATCGGC-CTCGATATATGAAA
* ** *
97769572 GCCAAAGTAAGACCTGTCTGGGACACGGCATCAGCCTCGATATATGAAA
1 GTCAGTGTAAGACCTGTCTGGGACACGGCATCGGCCTCGATATATGAAA
* * * ** * *
97769621 GTCAGTGTAAGACTTGTCTGGGACATGGCATCGACAACGATAGATGAGA
1 GTCAGTGTAAGACCTGTCTGGGACACGGCATCGGCCTCGATATATGAAA
* *
97769670 GCCAGTGTAAGACCTGTCTGGGACACGGCATCGGCCTCAATATATGAAA
1 GTCAGTGTAAGACCTGTCTGGGACACGGCATCGGCCTCGATATATGAAA
*
97769719 GTCAGTGTAAGACTTGTCTGGGACA
1 GTCAGTGTAAGACCTGTCTGGGACA
97769744 TGACATCGAC
Statistics
Matches: 139, Mismatches: 31, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
47 2 0.01
48 33 0.24
49 104 0.75
ACGTcount: A:0.30, C:0.20, G:0.29, T:0.22
Consensus pattern (49 bp):
GTCAGTGTAAGACCTGTCTGGGACACGGCATCGGCCTCGATATATGAAA
Found at i:97787121 original size:51 final size:51
Alignment explanation
Indices: 97787043--97787146 Score: 138
Period size: 51 Copynumber: 2.0 Consensus size: 51
97787033 AAATCACAAA
* * *
97787043 TTCTTTCCTAGATTCCGGTTGCACTAACATTGGTGCTTCGGTCAATAACAT
1 TTCTTTCCTAGATTCCGGTTGCACTAACACTGGTGCCTCAGTCAATAACAT
* **
97787094 TTCTTTCCCT-GATTCTGGTTGTTCTAACACTGGTGCCTCAGTCAATAACAT
1 TTCTTT-CCTAGATTCCGGTTGCACTAACACTGGTGCCTCAGTCAATAACAT
97787145 TT
1 TT
97787147 TCAATTTCTT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
51 43 0.93
52 3 0.07
ACGTcount: A:0.20, C:0.24, G:0.16, T:0.39
Consensus pattern (51 bp):
TTCTTTCCTAGATTCCGGTTGCACTAACACTGGTGCCTCAGTCAATAACAT
Found at i:97795158 original size:870 final size:870
Alignment explanation
Indices: 97793473--97796889 Score: 6771
Period size: 870 Copynumber: 3.9 Consensus size: 870
97793463 AATTGACGAT
* * * * *
97793473 TTTTTTTCCATTAATATGAGTTGCATGATAAATCTTATTGCTATTCAAAAAGGTTGTTAAATGCT
1 TTTTTGTCCATTAATATGAGTTGCATGATGAATATTATTGCTGTTCAGAAAGGTTGTTAAATGCT
* *
97793538 TATGTATTTTAAAAAAGGATTGATTAGTGAAGAGATAATCGTTATATGCTGTAGATCGTGATGTT
66 TATGTATTTTAAAAAAGGATTGATTAGTGAAGAGATAATCGTTCTATGCTATAGATCGTGATGTT
97793603 CGGTAGGTAGATAAAGGAAGTTCAAATGCTGAAATTCATTGCGTTTGAAGAGTAATATGCTGTAA
131 CGGTAGGTAGATAAAGGAAGTTCAAATGCTGAAATTCATTGCGTTTGAAGAGTAATATGCTGTAA
97793668 ATAATAATGTTTGAATGGTAAAATAATGATATTTATATGCTACACCTTGTTATGCTTGAAAGTTA
196 ATAATAATGTTTGAATGGTAAAATAATGATATTTATATGCTACACCTTGTTATGCTTGAAAGTTA
97793733 AGTCTAGAATTGTTTAAGGTTGTAACTTATGGTGTTGAAAGGTTGTTATTTTCATGACTAAATGT
261 AGTCTAGAATTGTTTAAGGTTGTAACTTATGGTGTTGAAAGGTTGTTATTTTCATGACTAAATGT
97793798 TAAACCTGATATTGTTCGTACGATGGATTTACAATAATCATCTTAACATTAATGTGCCTTAACTA
326 TAAACCTGATATTGTTCGTACGATGGATTTACAATAATCATCTTAACATTAATGTGCCTTAACTA
97793863 AGCTATAGATGTGTTTAAGTGTTTCATACATTATTAATGTTTCTATGATCTGAGTTAAGTCATAT
391 AGCTATAGATGTGTTTAAGTGTTTCATACATTATTAATGTTTCTATGATCTGAGTTAAGTCATAT
97793928 GATGTTGTAGTTTACCTTGTCTGAGTTAAGTCAAATAAACGGTGAGAAGTAAATTCGTATGTGAC
456 GATGTTGTAGTTTACCTTGTCTGAGTTAAGTCAAATAAACGGTGAGAAGTAAATTCGTATGTGAC
97793993 ATTTGTATATAAACTGTTATGTATTCGAATCACAAATCATGTGTATATAAATGTGTTATGGTGTC
521 ATTTGTATATAAACTGTTATGTATTCGAATCACAAATCATGTGTATATAAATGTGTTATGGTGTC
97794058 TTTAAAGTGTGAAATAATATTTTGGCTACGAAAGGACTAAAATTGTTATGGGATTTGGGCACTTA
586 TTTAAAGTGTGAAATAATATTTTGGCTACGAAAGGACTAAAATTGTTATGGGATTTGGGCACTTA
97794123 TTATGCTCAGATTGAATAGTTATGGCTTAGTGACTTTGAATGCTTAGTATGTGGTATACATATAC
651 TTATGCTCAGATTGAATAGTTATGGCTTAGTGACTTTGAATGCTTAGTATGTGGTATACATATAC
97794188 AAGTAGATATACATGTTTTTTTTAGAATACCTAAACACCCAATATTTTTGAAGGAGTTAGTGTTT
716 AAGTAGATATACATGTTTTTTTTAGAATACCTAAACACCCAATATTTTTGAAGGAGTTAGTGTTT
97794253 AAAAGAAGTCTAAAGGCAACTATCTAAATCCTCTAAATGTAACTTATCTTGGATGGTGTTACAAT
781 AAAAGAAGTCTAAAGGCAACTATCTAAATCCTCTAAATGTAACTTATCTTGGATGGTGTTACAAT
97794318 ATTGTATGTGTGCATATTGTTGATA
846 ATTGTATGTGTGCATATTGTTGATA
97794343 TTTTTGTCCATTAATATGAGTTGCATGATGAATATTATTGCTGTTCAGAAAGGTTGTTAAATGCT
1 TTTTTGTCCATTAATATGAGTTGCATGATGAATATTATTGCTGTTCAGAAAGGTTGTTAAATGCT
97794408 TATGTATTTTAAAAAAGGATTGATTAGTGAAGAGATAATCGTTCTATGCTATAGATCGTGATGTT
66 TATGTATTTTAAAAAAGGATTGATTAGTGAAGAGATAATCGTTCTATGCTATAGATCGTGATGTT
97794473 CGGTAGGTAGATAAAGGAAGTTCAAATGCTGAAATTCATTGCGTTTGAAGAGTAATATGCTGTAA
131 CGGTAGGTAGATAAAGGAAGTTCAAATGCTGAAATTCATTGCGTTTGAAGAGTAATATGCTGTAA
97794538 ATAATAATGTTTGAATGGTAAAATAATGATATTTATATGCTACACCTTGTTATGCTTGAAAGTTA
196 ATAATAATGTTTGAATGGTAAAATAATGATATTTATATGCTACACCTTGTTATGCTTGAAAGTTA
97794603 AGTCTAGAATTGTTTAAGGTTGTAACTTATGGTGTTGAAAGGTTGTTATTTTCATGACTAAATGT
261 AGTCTAGAATTGTTTAAGGTTGTAACTTATGGTGTTGAAAGGTTGTTATTTTCATGACTAAATGT
97794668 TAAACCTGATATTGTTCGTACGATGGATTTACAATAATCATCTTAACATTAATGTGCCTTAACTA
326 TAAACCTGATATTGTTCGTACGATGGATTTACAATAATCATCTTAACATTAATGTGCCTTAACTA
97794733 AGCTATAGATGTGTTTAAGTGTTTCATACATTATTAATGTTTCTATGATCTGAGTTAAGTCATAT
391 AGCTATAGATGTGTTTAAGTGTTTCATACATTATTAATGTTTCTATGATCTGAGTTAAGTCATAT
97794798 GATGTTGTAGTTTACCTTGTCTGAGTTAAGTCAAATAAACGGTGAGAAGTAAATTCGTATGTGAC
456 GATGTTGTAGTTTACCTTGTCTGAGTTAAGTCAAATAAACGGTGAGAAGTAAATTCGTATGTGAC
97794863 ATTTGTATATAAACTGTTATGTATTCGAATCACAAATCATGTGTATATAAATGTGTTATGGTGTC
521 ATTTGTATATAAACTGTTATGTATTCGAATCACAAATCATGTGTATATAAATGTGTTATGGTGTC
97794928 TTTAAAGTGTGAAATAATATTTTGGCTACGAAAGGACTAAAATTGTTATGGGATTTGGGCACTTA
586 TTTAAAGTGTGAAATAATATTTTGGCTACGAAAGGACTAAAATTGTTATGGGATTTGGGCACTTA
97794993 TTATGCTCAGATTGAATAGTTATGGCTTAGTGACTTTGAATGCTTAGTATGTGGTATACATATAC
651 TTATGCTCAGATTGAATAGTTATGGCTTAGTGACTTTGAATGCTTAGTATGTGGTATACATATAC
97795058 AAGTAGATATACATGTTTTTTTTAGAATACCTAAACACCCAATATTTTTGAAGGAGTTAGTGTTT
716 AAGTAGATATACATGTTTTTTTTAGAATACCTAAACACCCAATATTTTTGAAGGAGTTAGTGTTT
97795123 AAAAGAAGTCTAAAGGCAACTATCTAAATCCTCTAAATGTAACTTATCTTGGATGGTGTTACAAT
781 AAAAGAAGTCTAAAGGCAACTATCTAAATCCTCTAAATGTAACTTATCTTGGATGGTGTTACAAT
97795188 ATTGTATGTGTGCATATTGTTGATA
846 ATTGTATGTGTGCATATTGTTGATA
97795213 TTTTTGTCCATTAATATGAGTTGCATGATGAATATTATTGCTGTTCAGAAAGGTTGTTAAATGCT
1 TTTTTGTCCATTAATATGAGTTGCATGATGAATATTATTGCTGTTCAGAAAGGTTGTTAAATGCT
97795278 TATGTATTTTAAAAAAGGATTGATTAGTGAAGAGATAATCGTTCTATGCTATAGATCGTGATGTT
66 TATGTATTTTAAAAAAGGATTGATTAGTGAAGAGATAATCGTTCTATGCTATAGATCGTGATGTT
97795343 CGGTAGGTAGATAAAGGAAGTTCAAATGCTGAAATTCATTGCGTTTGAAGAGTAATATGCTGTAA
131 CGGTAGGTAGATAAAGGAAGTTCAAATGCTGAAATTCATTGCGTTTGAAGAGTAATATGCTGTAA
97795408 ATAATAATGTTTGAATGGTAAAATAATGATATTTATATGCTACACCTTGTTATGCTTGAAAGTTA
196 ATAATAATGTTTGAATGGTAAAATAATGATATTTATATGCTACACCTTGTTATGCTTGAAAGTTA
97795473 AGTCTAGAATTGTTTAAGGTTGTAACTTATGGTGTTGAAAGGTTGTTATTTTCATGACTAAATGT
261 AGTCTAGAATTGTTTAAGGTTGTAACTTATGGTGTTGAAAGGTTGTTATTTTCATGACTAAATGT
97795538 TAAACCTGATATTGTTCGTACGATGGATTTACAATAATCATCTTAACATTAATGTGCCTTAACTA
326 TAAACCTGATATTGTTCGTACGATGGATTTACAATAATCATCTTAACATTAATGTGCCTTAACTA
97795603 AGCTATAGATGTGTTTAAGTGTTTCATACATTATTAATGTTTCTATGATCTGAGTTAAGTCATAT
391 AGCTATAGATGTGTTTAAGTGTTTCATACATTATTAATGTTTCTATGATCTGAGTTAAGTCATAT
97795668 GATGTTGTAGTTTACCTTGTCTGAGTTAAGTCAAATAAACGGTGAGAAGTAAATTCGTATGTGAC
456 GATGTTGTAGTTTACCTTGTCTGAGTTAAGTCAAATAAACGGTGAGAAGTAAATTCGTATGTGAC
97795733 ATTTGTATATAAACTGTTATGTATTCGAATCACAAATCATGTGTATATAAATGTGTTATGGTGTC
521 ATTTGTATATAAACTGTTATGTATTCGAATCACAAATCATGTGTATATAAATGTGTTATGGTGTC
97795798 TTTAAAGTGTGAAATAATATTTTGGCTACGAAAGGACTAAAATTGTTATGGGATTTGGGCACTTA
586 TTTAAAGTGTGAAATAATATTTTGGCTACGAAAGGACTAAAATTGTTATGGGATTTGGGCACTTA
97795863 TTATGCTCAGATTGAATAGTTATGGCTTAGTGACTTTGAATGCTTAGTATGTGGTATACATATAC
651 TTATGCTCAGATTGAATAGTTATGGCTTAGTGACTTTGAATGCTTAGTATGTGGTATACATATAC
97795928 AAGTAGATATACATGTTTTTTTTAGAATACCTAAACACCCAATATTTTTGAAGGAGTTAGTGTTT
716 AAGTAGATATACATGTTTTTTTTAGAATACCTAAACACCCAATATTTTTGAAGGAGTTAGTGTTT
97795993 AAAAGAAGTCTAAAGGCAACTATCTAAATCCTCTAAATGTAACTTATCTTGGATGGTGTTACAAT
781 AAAAGAAGTCTAAAGGCAACTATCTAAATCCTCTAAATGTAACTTATCTTGGATGGTGTTACAAT
97796058 ATTGTATGTGTGCATATTGTTGATA
846 ATTGTATGTGTGCATATTGTTGATA
97796083 TTTTTGTCCATTAATATGAGTTGCATGATGAATATTATTGCTGTTCAGAAAGGTTGTTAAATGCT
1 TTTTTGTCCATTAATATGAGTTGCATGATGAATATTATTGCTGTTCAGAAAGGTTGTTAAATGCT
97796148 TATGTATTTTAAAAAAGGATTGATTAGTGAAGAGATAATCGTTCTATGCTATAGATCGTGATGTT
66 TATGTATTTTAAAAAAGGATTGATTAGTGAAGAGATAATCGTTCTATGCTATAGATCGTGATGTT
97796213 CGGTAGGTAGATAAAGGAAGTTCAAATGCTGAAATTCATTGCGTTTGAAGAGTAATATGCTGTAA
131 CGGTAGGTAGATAAAGGAAGTTCAAATGCTGAAATTCATTGCGTTTGAAGAGTAATATGCTGTAA
97796278 ATAATAATGTTTGAATGGTAAAATAATGATATTTATATGCTACACCTTGTTATGCTTGAAAGTTA
196 ATAATAATGTTTGAATGGTAAAATAATGATATTTATATGCTACACCTTGTTATGCTTGAAAGTTA
97796343 AGTCTAGAATTGTTTAAGGTTGTAACTTATGGTGTTGAAAGGTTGTTATTTTCATGACTAAATGT
261 AGTCTAGAATTGTTTAAGGTTGTAACTTATGGTGTTGAAAGGTTGTTATTTTCATGACTAAATGT
97796408 TAAACCTGATATTGTTCGTACGATGGATTTACAATAATCATCTTAACATTAATGTGCCTTAACTA
326 TAAACCTGATATTGTTCGTACGATGGATTTACAATAATCATCTTAACATTAATGTGCCTTAACTA
97796473 AGCTATAGATGTGTTTAAGTGTTTCATACATTATTAATGTTTCTATGATCTGAGTTAAGTCATAT
391 AGCTATAGATGTGTTTAAGTGTTTCATACATTATTAATGTTTCTATGATCTGAGTTAAGTCATAT
97796538 GATGTTGTAGTTTACCTTGTCTGAGTTAAGTCAAATAAACGGTGAGAAGTAAATTCGTATGTGAC
456 GATGTTGTAGTTTACCTTGTCTGAGTTAAGTCAAATAAACGGTGAGAAGTAAATTCGTATGTGAC
97796603 ATTTGTATATAAACTGTTATGTATTCGAATCACAAATCATGTGTATATAAATGTGTTATGGTGTC
521 ATTTGTATATAAACTGTTATGTATTCGAATCACAAATCATGTGTATATAAATGTGTTATGGTGTC
97796668 TTTAAAGTGTGAAATAATATTTTGGCTACGAAAGGACTAAAATTGTTATGGGATTTGGGCACTTA
586 TTTAAAGTGTGAAATAATATTTTGGCTACGAAAGGACTAAAATTGTTATGGGATTTGGGCACTTA
97796733 TTATGCTCAGATTGAATAGTTATGGCTTAGTGACTTTGAATGCTTAGTATGTGGTATACATATAC
651 TTATGCTCAGATTGAATAGTTATGGCTTAGTGACTTTGAATGCTTAGTATGTGGTATACATATAC
97796798 AAGTAGATATACATGTTTTTTTTAGAATACCTAAACACCCAATATTTTTGAAGGAGTTAGTGTTT
716 AAGTAGATATACATGTTTTTTTTAGAATACCTAAACACCCAATATTTTTGAAGGAGTTAGTGTTT
97796863 AAAAGAAGTCTAAAGGCAACTATCTAA
781 AAAAGAAGTCTAAAGGCAACTATCTAA
97796890 GACTAAACCA
Statistics
Matches: 2540, Mismatches: 7, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
870 2540 1.00
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.38
Consensus pattern (870 bp):
TTTTTGTCCATTAATATGAGTTGCATGATGAATATTATTGCTGTTCAGAAAGGTTGTTAAATGCT
TATGTATTTTAAAAAAGGATTGATTAGTGAAGAGATAATCGTTCTATGCTATAGATCGTGATGTT
CGGTAGGTAGATAAAGGAAGTTCAAATGCTGAAATTCATTGCGTTTGAAGAGTAATATGCTGTAA
ATAATAATGTTTGAATGGTAAAATAATGATATTTATATGCTACACCTTGTTATGCTTGAAAGTTA
AGTCTAGAATTGTTTAAGGTTGTAACTTATGGTGTTGAAAGGTTGTTATTTTCATGACTAAATGT
TAAACCTGATATTGTTCGTACGATGGATTTACAATAATCATCTTAACATTAATGTGCCTTAACTA
AGCTATAGATGTGTTTAAGTGTTTCATACATTATTAATGTTTCTATGATCTGAGTTAAGTCATAT
GATGTTGTAGTTTACCTTGTCTGAGTTAAGTCAAATAAACGGTGAGAAGTAAATTCGTATGTGAC
ATTTGTATATAAACTGTTATGTATTCGAATCACAAATCATGTGTATATAAATGTGTTATGGTGTC
TTTAAAGTGTGAAATAATATTTTGGCTACGAAAGGACTAAAATTGTTATGGGATTTGGGCACTTA
TTATGCTCAGATTGAATAGTTATGGCTTAGTGACTTTGAATGCTTAGTATGTGGTATACATATAC
AAGTAGATATACATGTTTTTTTTAGAATACCTAAACACCCAATATTTTTGAAGGAGTTAGTGTTT
AAAAGAAGTCTAAAGGCAACTATCTAAATCCTCTAAATGTAACTTATCTTGGATGGTGTTACAAT
ATTGTATGTGTGCATATTGTTGATA
Found at i:97802683 original size:40 final size:41
Alignment explanation
Indices: 97802606--97802717 Score: 131
Period size: 40 Copynumber: 2.8 Consensus size: 41
97802596 ACATTAAACT
*
97802606 GAAGCTATCTTAGTATTGCACACTTAGTGCCACATATAGCC
1 GAAGCTATCTTAGTATTGCACACTAAGTGCCACATATAGCC
* * *
97802647 GAAGCTAT-TTTG-ATTCGCACACTAAGTGCTATATATAGCC
1 GAAGCTATCTTAGTATT-GCACACTAAGTGCCACATATAGCC
* * *
97802687 GAAGCTATCTCA-AAATGCACACTAAGTGCCA
1 GAAGCTATCTTAGTATTGCACACTAAGTGCCA
97802718 AACAAAGTCG
Statistics
Matches: 60, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
39 3 0.05
40 46 0.77
41 11 0.18
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (41 bp):
GAAGCTATCTTAGTATTGCACACTAAGTGCCACATATAGCC
Found at i:97811309 original size:42 final size:42
Alignment explanation
Indices: 97811208--97811382 Score: 154
Period size: 43 Copynumber: 4.1 Consensus size: 42
97811198 TCGTAAACTC
* * ** * ** *
97811208 ATACAATGCCAACGTCCCAGATGTGGTCTTACATGTTATCAA
1 ATACGATGCCAATGTCCCAGACATGGTCTTACACGAAATCAT
* * *
97811250 ATATCGATGCCACTGTCCCAGACAAGGTCATACACGAAATCAT
1 ATA-CGATGCCAATGTCCCAGACATGGTCTTACACGAAATCAT
97811293 ATACGATGCCAATGTCCCAGACATGGTCTTACACGTAAATC-T
1 ATACGATGCCAATGTCCCAGACATGGTCTTACACG-AAATCAT
* * * * * *
97811335 CAAATCGATGCCAACGACCCAAACATGGTCTTACACGAAGTCAC
1 -ATA-CGATGCCAATGTCCCAGACATGGTCTTACACGAAATCAT
97811379 ATAC
1 ATAC
97811383 CGAAATCCTA
Statistics
Matches: 107, Mismatches: 21, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
42 34 0.32
43 44 0.41
44 29 0.27
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (42 bp):
ATACGATGCCAATGTCCCAGACATGGTCTTACACGAAATCAT
Found at i:97814484 original size:40 final size:40
Alignment explanation
Indices: 97814423--97814749 Score: 285
Period size: 40 Copynumber: 8.2 Consensus size: 40
97814413 CGGATGATAA
*
97814423 CCGGGCTAAGTCCCGAGAGCATTTGAGCTAGTGGCTTATT
1 CCGGGCTAAGTCCCGAAAGCATTTGAGCTAGTGGCTTATT
* * * *
97814463 TCGGGCTAAGTCCCGAAAGCA-TTCATGCGAGCT-AC-TATAT
1 CCGGGCTAAGTCCCGAAAGCATTTGA-GCTAG-TGGCTTAT-T
* * * * *
97814503 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCT--ATTATAT
1 CCGGGCTAAGTCCCGAAAGCATTTGAGCTAG-TGGCTTAT-T
*
97814543 CCGGGCTAAGTCCCGAGAGCATTTGAGCTAGTGGCTTATT
1 CCGGGCTAAGTCCCGAAAGCATTTGAGCTAGTGGCTTATT
* *
97814583 TCGGGCTAAGTCCCGAGAGCATTTGAGCTAGTGGCTTATT
1 CCGGGCTAAGTCCCGAAAGCATTTGAGCTAGTGGCTTATT
* * * * ** *
97814623 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-TATTATA
1 CCGGGCTAAGTCCCGAAAGCATTTGAGCTAGTGGCTTATT
* * * ** *
97814662 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTAC-TATAA
1 CCGGGCTAAGTCCCGAAAGCATTTGAGCTAGTGGCTTAT-T
*
97814702 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGC-TATAT
1 CCGGGCTAAGTCCCGAAAGCATTTGAGCTAGTGGCTTAT-T
97814742 CC-GGCTAA
1 CCGGGCTAA
97814750 ACTCCGAAGG
Statistics
Matches: 244, Mismatches: 34, Indels: 19
0.82 0.11 0.06
Matches are distributed among these distances:
39 50 0.20
40 187 0.77
41 7 0.03
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAAGCATTTGAGCTAGTGGCTTATT
Found at i:97814612 original size:22 final size:22
Alignment explanation
Indices: 97814547--97814612 Score: 52
Period size: 22 Copynumber: 3.2 Consensus size: 22
97814537 TTATATCCGG
97814547 GCTAAGTCCCGAGAGCATTTGA
1 GCTAAGTCCCGAGAGCATTTGA
*** *
97814569 GCT-AGT---G-GCTTATTTCGG
1 GCTAAGTCCCGAGAGCATTT-GA
97814587 GCTAAGTCCCGAGAGCATTTGA
1 GCTAAGTCCCGAGAGCATTTGA
97814609 GCTA
1 GCTA
97814613 GTGGCTTATT
Statistics
Matches: 30, Mismatches: 8, Indels: 12
0.60 0.16 0.24
Matches are distributed among these distances:
17 5 0.17
18 5 0.17
19 3 0.10
21 3 0.10
22 9 0.30
23 5 0.17
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (22 bp):
GCTAAGTCCCGAGAGCATTTGA
Found at i:97814636 original size:120 final size:119
Alignment explanation
Indices: 97814422--97814749 Score: 420
Period size: 120 Copynumber: 2.8 Consensus size: 119
97814412 TCGGATGATA
97814422 ACCGGGCTAAGTCCCGAGAGCATTTGAGCTAGTGGCTTATTTCGGGCTAAGTCCCGAAAGCA-TT
1 ACCGGGCTAAGTCCCGAGAGCATTTGAGCTAGTGGCTTATTTCGGGCTAAGTCCCG-AAGCATTT
* * * *
97814486 CATGCGAGCT-AC-TATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTAT
65 GA-GCTAG-TGGCTTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTAT
97814541 ATCCGGGCTAAGTCCCGAGAGCATTTGAGCTAGTGGCTTATTTCGGGCTAAGTCCCGAGAGCATT
1 A-CCGGGCTAAGTCCCGAGAGCATTTGAGCTAGTGGCTTATTTCGGGCTAAGTCCCGA-AGCATT
* *
97814606 TGAGCTAGTGGCTTAT-TTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAT
64 TGAGCTAGTGGCTTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTAT
* * ** **
97814661 ACCGGGCTAAGTCCCGA-AGGCATTTGTGCAAGTTAC-TATAACCGGGCTAAGTCCCGAAGGCAT
1 ACCGGGCTAAGTCCCGAGA-GCATTTGAGCTAGTGGCTTAT-TTCGGGCTAAGTCCCGAA-GCAT
97814724 TTGAGCTAGTGGC-TATATCC-GGCTAA
63 TTGAGCTAGTGGCTTATATCCGGGCTAA
97814750 ACTCCGAAGG
Statistics
Matches: 187, Mismatches: 13, Indels: 19
0.85 0.06 0.09
Matches are distributed among these distances:
118 14 0.07
119 66 0.35
120 101 0.54
121 6 0.03
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (119 bp):
ACCGGGCTAAGTCCCGAGAGCATTTGAGCTAGTGGCTTATTTCGGGCTAAGTCCCGAAGCATTTG
AGCTAGTGGCTTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTAT
Found at i:97822678 original size:40 final size:39
Alignment explanation
Indices: 97822655--97823545 Score: 1505
Period size: 40 Copynumber: 22.3 Consensus size: 39
97822645 AGTGGCTAAT
* *
97822655 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATA
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTA-TATA
97822695 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTA-TATA
97822735 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTA-TATA
97822775 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTA-TATA
97822815 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTA-TATA
97822855 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTA-TATA
97822895 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTA-TATA
97822935 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTA-TATA
97822975 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTA-TATA
97823015 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTA-TATA
97823055 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTA-TATA
97823095 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTA-TATA
97823135 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTA-TATA
97823175 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTA-TATA
97823215 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTA-TATA
97823255 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTA-TATA
97823295 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTA-TATA
97823335 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTA-TATA
97823375 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTA-TATA
97823415 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTA-TATA
* *
97823455 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAT-TA
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATATA
* * *
97823493 TACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
1 T-CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTA-TATA
*
97823534 ACCGGGCTAAGT
1 TCCGGGCTAAGT
97823546 AGATGCTGAT
Statistics
Matches: 841, Mismatches: 7, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
38 3 0.00
39 34 0.04
40 802 0.95
41 2 0.00
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.27
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATATA
Found at i:97822749 original size:80 final size:80
Alignment explanation
Indices: 97822655--97823545 Score: 1685
Period size: 80 Copynumber: 11.2 Consensus size: 80
97822645 AGTGGCTAAT
* * *
97822655 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTT
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
97822720 GTGCGAGCTATTATA
66 GTGCGAGCTATTATA
97822735 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
97822800 GTGCGAGCTATTATA
66 GTGCGAGCTATTATA
97822815 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
97822880 GTGCGAGCTATTATA
66 GTGCGAGCTATTATA
97822895 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
97822960 GTGCGAGCTATTATA
66 GTGCGAGCTATTATA
97822975 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
97823040 GTGCGAGCTATTATA
66 GTGCGAGCTATTATA
97823055 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
97823120 GTGCGAGCTATTATA
66 GTGCGAGCTATTATA
97823135 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
97823200 GTGCGAGCTATTATA
66 GTGCGAGCTATTATA
97823215 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
97823280 GTGCGAGCTATTATA
66 GTGCGAGCTATTATA
97823295 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
97823360 GTGCGAGCTATTATA
66 GTGCGAGCTATTATA
97823375 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
97823440 GTGCGAGCTATTATA
66 GTGCGAGCTATTATA
* * *
97823455 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
* * *
97823519 GTGCAAGTTACTATA
66 GTGCGAGCTATTATA
*
97823534 ACCGGGCTAAGT
1 TCCGGGCTAAGT
97823546 AGATGCTGAT
Statistics
Matches: 801, Mismatches: 10, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
79 46 0.06
80 755 0.94
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
GTGCGAGCTATTATA
Found at i:97822829 original size:120 final size:120
Alignment explanation
Indices: 97822655--97823545 Score: 1685
Period size: 120 Copynumber: 7.4 Consensus size: 120
97822645 AGTGGCTAAT
* * *
97822655 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTT
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
97822720 GTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
66 GTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
97822775 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
97822840 GTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
66 GTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
97822895 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
97822960 GTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
66 GTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
97823015 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
97823080 GTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
66 GTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
97823135 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
97823200 GTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
66 GTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
97823255 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
97823320 GTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
66 GTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
97823375 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
* *
97823440 GTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA
66 GTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
* * * * *
97823495 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAACCGGGCTAAGT
1 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGT
97823546 AGATGCTGAT
Statistics
Matches: 761, Mismatches: 10, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
119 46 0.06
120 715 0.94
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.27
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTT
GTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
Found at i:97829841 original size:44 final size:43
Alignment explanation
Indices: 97829769--97829873 Score: 122
Period size: 44 Copynumber: 2.4 Consensus size: 43
97829759 TCTCAGATGT
* * ** *
97829769 GGTCTTACATGTAATCACATATTAATGCCGTCGTCCCAAAGAG
1 GGTCTTACACGTAATCACAAATTAATGCCAACGTCCCAAACAG
* * *
97829812 GGTCTTACACGTAAATCACAAATTGATGCCAACGTCCCAGACAT
1 GGTCTTACACGT-AATCACAAATTAATGCCAACGTCCCAAACAG
97829856 GGTCTTACACG-AATCACA
1 GGTCTTACACGTAATCACA
97829874 TATCGGAATC
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
42 7 0.13
43 11 0.21
44 35 0.66
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (43 bp):
GGTCTTACACGTAATCACAAATTAATGCCAACGTCCCAAACAG
Found at i:97831009 original size:13 final size:13
Alignment explanation
Indices: 97830991--97831017 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
97830981 CACAAACGAT
97830991 AAAATTTTCACAC
1 AAAATTTTCACAC
97831004 AAAATTTTCACAC
1 AAAATTTTCACAC
97831017 A
1 A
97831018 TATCAATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (13 bp):
AAAATTTTCACAC
Found at i:97839542 original size:27 final size:27
Alignment explanation
Indices: 97839481--97839570 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
97839471 AGGAAGCGTC
97839481 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* * *
97839509 CTGGTGGCCCTGCCACATATACCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
97839536 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
97839565 CTGGTG
1 CTGGTG
97839571 ACTCCGTCAC
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 22 0.42
28 24 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.31
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:97846058 original size:23 final size:23
Alignment explanation
Indices: 97846032--97846076 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
97846022 AGTGGTGCCG
*
97846032 TTTCCTGACTTTTCTCCTCATCT
1 TTTCCTGACTCTTCTCCTCATCT
* **
97846055 TTTCTTTTCTCTTCTCCTCATC
1 TTTCCTGACTCTTCTCCTCATC
97846077 AACCTTTTTC
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.07, C:0.36, G:0.02, T:0.56
Consensus pattern (23 bp):
TTTCCTGACTCTTCTCCTCATCT
Found at i:97847373 original size:27 final size:27
Alignment explanation
Indices: 97847312--97847401 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
97847302 AGGAAGCGTC
97847312 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* * *
97847340 CTGGTGGCCCTGCCACATATACCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
97847367 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
97847396 CTGGTG
1 CTGGTG
97847402 ACTCCGTCAC
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 22 0.42
28 24 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.31
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:97852115 original size:22 final size:22
Alignment explanation
Indices: 97852090--97852145 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 22
97852080 TAGTTAAAAA
97852090 AATTAGA-TAATTATTAATATAT
1 AATTAGATTAATTA-TAATATAT
* *
97852112 AATTATATTCATTATAATATAT
1 AATTAGATTAATTATAATATAT
97852134 -ATTA-ATT-ATTAT
1 AATTAGATTAATTAT
97852146 CAATTTTAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
19 5 0.16
20 3 0.10
21 4 0.13
22 14 0.45
23 5 0.16
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (22 bp):
AATTAGATTAATTATAATATAT
Found at i:97852134 original size:16 final size:15
Alignment explanation
Indices: 97852101--97852142 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
97852091 ATTAGATAAT
97852101 TATTAATATATAATTA
1 TATTAAT-TATAATTA
*
97852117 TATTCATTATAATATA
1 TATTAATTATAAT-TA
97852133 TATTAATTAT
1 TATTAATTAT
97852143 TATCAATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 6 0.26
16 17 0.74
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTAATTATAATTA
Found at i:97852244 original size:22 final size:24
Alignment explanation
Indices: 97852199--97852244 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
97852189 TAATCTTTAA
97852199 TATATAATTATATCTATTATAATT
1 TATATAATTATATCTATTATAATT
97852223 TATAT-ATTA-ATCT-TTATCAATT
1 TATATAATTATATCTATTAT-AATT
97852245 AGCATAGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 4 0.19
22 8 0.38
23 4 0.19
24 5 0.24
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (24 bp):
TATATAATTATATCTATTATAATT
Found at i:97865769 original size:31 final size:31
Alignment explanation
Indices: 97865726--97865901 Score: 302
Period size: 31 Copynumber: 5.7 Consensus size: 31
97865716 TTAGTCTTGA
*
97865726 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
97865756 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
97865787 CATATCACT-GGCTGAAGCCTTTTCATATAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
97865817 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
97865848 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
97865879 CATATCACTGGGTCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
97865902 ACTATAAACG
Statistics
Matches: 138, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
30 33 0.24
31 105 0.76
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:97865806 original size:61 final size:62
Alignment explanation
Indices: 97865726--97865901 Score: 302
Period size: 61 Copynumber: 2.9 Consensus size: 62
97865716 TTAGTCTTGA
*
97865726 CATAT-ACTGGGCCGAAGCCTTTCCATAAATCATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAATCATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
97865787 CATATCACT-GGCTGAAGCCTTTTCATATATCATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAATCATATCACTGGGCCGAAGCCTTTTCATAAAT
*
97865848 CATATCACTGGGCCGAAGCCTTTTCATAAATCATATCACTGGGTCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTTTCATAAATCATATCACTGGGCCGAAGCCTTT
97865902 ACTATAAACG
Statistics
Matches: 107, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
61 63 0.59
62 44 0.41
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (62 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAATCATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:97865888 original size:92 final size:92
Alignment explanation
Indices: 97865726--97865901 Score: 318
Period size: 92 Copynumber: 1.9 Consensus size: 92
97865716 TTAGTCTTGA
97865726 CATATACTGGGCCGAAGCCTTTCCATAAATCATATCACTGGGCCGAAGCCTTTTCATAAATCATA
1 CATATACTGGGCCGAAGCCTTTCCATAAATCATATCACTGGGCCGAAGCCTTTTCATAAATCATA
97865791 TCACTGGCT-GAAGCCTTTTCATATAT
66 TCACTGGCTCGAAGCCTTTTCATATAT
*
97865817 CATATCACTGGGCCGAAGCCTTTTCATAAATCATATCACTGGGCCGAAGCCTTTTCATAAATCAT
1 CATAT-ACTGGGCCGAAGCCTTTCCATAAATCATATCACTGGGCCGAAGCCTTTTCATAAATCAT
*
97865882 ATCACTGGGTCGAAGCCTTT
65 ATCACTGGCTCGAAGCCTTT
97865902 ACTATAAACG
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
91 5 0.06
92 67 0.83
93 9 0.11
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (92 bp):
CATATACTGGGCCGAAGCCTTTCCATAAATCATATCACTGGGCCGAAGCCTTTTCATAAATCATA
TCACTGGCTCGAAGCCTTTTCATATAT
Found at i:97865984 original size:42 final size:42
Alignment explanation
Indices: 97865925--97866730 Score: 1603
Period size: 42 Copynumber: 19.2 Consensus size: 42
97865915 TGGCCCTTAG
*
97865925 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
97865967 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
97866009 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
97866051 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
97866093 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
97866135 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
97866177 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
97866219 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
97866261 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
97866303 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
97866345 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
97866387 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
97866429 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
97866471 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
97866513 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
97866555 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
97866597 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
97866639 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
97866681 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
97866723 GCCCATTT
1 GCCCATTT
97866731 GGGGAGACTA
Statistics
Matches: 763, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 763 1.00
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (42 bp):
GCCCATTTAAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:97866910 original size:25 final size:24
Alignment explanation
Indices: 97866878--97866946 Score: 93
Period size: 25 Copynumber: 2.8 Consensus size: 24
97866868 CTCTTTTAAT
97866878 AACTGGGGCAAAGCCCTTTCTGATA
1 AACTGGGGCAAAGCCCTTTC-GATA
*
97866903 AACTGGGGCAAAGCCCGTTTCGGTA
1 AACTGGGGCAAAGCCC-TTTCGATA
* *
97866928 AACTAGGGCAGAGCCCTTT
1 AACTGGGGCAAAGCCCTTT
97866947 TAACACTTCC
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
24 3 0.08
25 33 0.82
26 4 0.10
ACGTcount: A:0.26, C:0.25, G:0.28, T:0.22
Consensus pattern (24 bp):
AACTGGGGCAAAGCCCTTTCGATA
Found at i:97867913 original size:27 final size:27
Alignment explanation
Indices: 97867853--97868061 Score: 167
Period size: 27 Copynumber: 7.7 Consensus size: 27
97867843 TTCATCCTAC
* * *
97867853 AAGGGTGTTTTGGTAAATCTACAAAAC-
1 AAGGGTATTTTGGTAATTTTAC-AAACT
* **
97867880 AAGGGTATTTTAGTAATTTTGTAAACT
1 AAGGGTATTTTGGTAATTTTACAAACT
* * * *
97867907 AATGGTATTTCT-ATAATTTTTAGAAAAT
1 AAGGGTATTT-TGGTAA-TTTTACAAACT
**
97867935 CAAGGGTATTTCT-GTAATTTTGTAAA-T
1 -AAGGGTATTT-TGGTAATTTTACAAACT
* * *
97867962 CAGGGGTGTTTTGGTAATTTTACAAATT
1 -AAGGGTATTTTGGTAATTTTACAAACT
*
97867990 AAGGGTATTTTGATAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACT
97868017 -AGAGGTATTTTGGTAATTTTACAAACT
1 AAG-GGTATTTTGGTAATTTTACAAACT
*
97868044 AGGGGTATTTTGGTAATT
1 AAGGGTATTTTGGTAATT
97868062 CTATCCTACA
Statistics
Matches: 149, Mismatches: 25, Indels: 16
0.78 0.13 0.08
Matches are distributed among these distances:
26 7 0.05
27 110 0.74
28 18 0.12
29 14 0.09
ACGTcount: A:0.33, C:0.06, G:0.20, T:0.42
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAACT
Found at i:97868117 original size:27 final size:27
Alignment explanation
Indices: 97868082--97868198 Score: 135
Period size: 27 Copynumber: 4.3 Consensus size: 27
97868072 GTAATTACAC
97868082 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* *
97868109 AAGCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * * *
97868136 AATCAAAGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * * **
97868163 AATTGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTTTGTA
97868190 AATCGAGGG
1 AATCGAGGG
97868199 CATTTTAGTA
Statistics
Matches: 76, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 76 1.00
ACGTcount: A:0.40, C:0.08, G:0.25, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:97875140 original size:47 final size:46
Alignment explanation
Indices: 97874983--97875337 Score: 244
Period size: 47 Copynumber: 7.6 Consensus size: 46
97874973 CGATTTGTGC
* * * **
97874983 GCCAGAGTAAGACATGGCTGGGACATGCATCGGCCACATTATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATACGATGATA
* * **
97875029 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATCCAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATAC-GATGATA
** * *
97875077 GTTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATACGATGATA
* * * * *
97875123 GCCAATGTAAGGCCATGTCTGGCATATGGCATCGGCACAGA-GATGAGTA
1 GCCAGTGTAA-GACATGTCTGGGACAT-GCATCGGC-CATACGATGA-TA
97875172 -CCAGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGACAGA-GATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAT--AC-GATGATA
* * * * * *
97875218 GCTAGTGTAAGACTTGTTTGGGACACGCATTGG-C-TAAGA-GATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATACGATGATA
* ** *
97875261 TGCTAGTGTAAGACATGTCTGGGACATGCATC-AACACT-CGTATATGAGA
1 -GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCA-TACG---ATGATA
97875310 GCCAGTGTAAGACCATGTCTGGGACATG
1 GCCAGTGTAAGA-CATGTCTGGGACATG
97875338 GCATTGGCAA
Statistics
Matches: 242, Mismatches: 45, Indels: 41
0.74 0.14 0.12
Matches are distributed among these distances:
43 6 0.02
44 29 0.12
45 2 0.01
46 41 0.17
47 88 0.36
48 53 0.22
49 23 0.10
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATACGATGATA
Found at i:97875152 original size:94 final size:93
Alignment explanation
Indices: 97874989--97875346 Score: 311
Period size: 94 Copynumber: 3.8 Consensus size: 93
97874979 GTGCGCCAGA
* * * * *
97874989 GTAAGACATGGCTGGGACATGCATCGGCCACATTATGATAGCCAGTGTAAGACCATGTCTGGGAC
1 GTAAGACATGTCTGGGACATGCATCAGCCACACTATGATAGCCAATGTAAGACCATGTCTGGCAC
* *
97875054 ATGGCATCGGCATCCAGACGA-GGGT-TAGT
66 ATGGCATCGGCA--CAGA-GATGAGTACAGT
* * *
97875083 GTAAGACATGTCTGGGACATGCATCAGCCATACTATGATAGCCAATGTAAGGCCATGTCTGGCAT
1 GTAAGACATGTCTGGGACATGCATCAGCCACACTATGATAGCCAATGTAAGACCATGTCTGGCAC
97875148 ATGGCATCGGCACAGAGATGAGTACCAGT
66 ATGGCATCGGCACAGAGATGAGTA-CAGT
* * * * * * * *
97875177 GTAAGACATGTCTGGGACATGCATCGGCCTCGAC-AGAGATAGCTAGTGTAAGA-CTTGTTTGGG
1 GTAAGACATGTCTGGGACATGCATCAGCCAC-ACTA-TGATAGCCAATGTAAGACCATGTCTGGC
* * *
97875240 ACA-CGCATTGGCTA-AGAGAT-A-TGCTAGT
64 ACATGGCATCGGC-ACAGAGATGAGTAC-AGT
* * * *
97875268 GTAAGACATGTCTGGGACATGCATCA-ACACTCGTATATGAGAGCCAGTGTAAGACCATGTCTGG
1 GTAAGACATGTCTGGGACATGCATCAGCCACAC---TATGATAGCCAATGTAAGACCATGTCTGG
* *
97875332 GACATGGCATTGGCA
63 CACATGGCATCGGCA
97875347 ATATATCCCA
Statistics
Matches: 217, Mismatches: 34, Indels: 27
0.78 0.12 0.10
Matches are distributed among these distances:
89 1 0.00
90 3 0.01
91 31 0.14
92 22 0.10
93 26 0.12
94 119 0.55
95 15 0.07
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (93 bp):
GTAAGACATGTCTGGGACATGCATCAGCCACACTATGATAGCCAATGTAAGACCATGTCTGGCAC
ATGGCATCGGCACAGAGATGAGTACAGT
Found at i:97880264 original size:41 final size:42
Alignment explanation
Indices: 97880219--97880325 Score: 155
Period size: 41 Copynumber: 2.6 Consensus size: 42
97880209 TGATGAATCA
*
97880219 GCTATATATGGCACTTAGTGTGCGAGATCGAAATAGCTT-CG
1 GCTATATATGGCACTTAGTGTGCGAGATCGAAATAGATTCCG
* * *
97880260 GCTATATATGGAACTTAGTGTGCGAGATTGAGATAGATTCCG
1 GCTATATATGGCACTTAGTGTGCGAGATCGAAATAGATTCCG
*
97880302 G-TATATATGGCCCTTAGTGTGCGA
1 GCTATATATGGCACTTAGTGTGCGA
97880326 TTTGAGATAG
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
41 56 0.95
42 3 0.05
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (42 bp):
GCTATATATGGCACTTAGTGTGCGAGATCGAAATAGATTCCG
Found at i:97883684 original size:28 final size:29
Alignment explanation
Indices: 97883647--97883713 Score: 91
Period size: 28 Copynumber: 2.3 Consensus size: 29
97883637 AAGTCTACAT
*
97883647 ACATGCATATGGCCCACTAAGCCC-AATC
1 ACATTCATATGGCCCACTAAGCCCAAATC
* * *
97883675 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCACTAAGCCCAAATC
97883704 ACATTCATAT
1 ACATTCATAT
97883714 ACATGCTTTC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
28 20 0.61
29 13 0.39
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.25
Consensus pattern (29 bp):
ACATTCATATGGCCCACTAAGCCCAAATC
Found at i:97887924 original size:69 final size:69
Alignment explanation
Indices: 97887851--97887989 Score: 278
Period size: 69 Copynumber: 2.0 Consensus size: 69
97887841 CCGAATCTAA
97887851 AGAAAAAAAAAGGGGAACAAGAGCATTCGGTGATGAAAACAAGTTGTGTCCTTTGATTCTTCTTG
1 AGAAAAAAAAAGGGGAACAAGAGCATTCGGTGATGAAAACAAGTTGTGTCCTTTGATTCTTCTTG
97887916 GCCG
66 GCCG
97887920 AGAAAAAAAAAGGGGAACAAGAGCATTCGGTGATGAAAACAAGTTGTGTCCTTTGATTCTTCTTG
1 AGAAAAAAAAAGGGGAACAAGAGCATTCGGTGATGAAAACAAGTTGTGTCCTTTGATTCTTCTTG
97887985 GCCG
66 GCCG
97887989 A
1 A
97887990 ATTGAAAGGA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.35, C:0.14, G:0.26, T:0.24
Consensus pattern (69 bp):
AGAAAAAAAAAGGGGAACAAGAGCATTCGGTGATGAAAACAAGTTGTGTCCTTTGATTCTTCTTG
GCCG
Found at i:97901107 original size:27 final size:25
Alignment explanation
Indices: 97901073--97901147 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 25
97901063 TCATTACGGA
97901073 GTTTGCCACAAAGGCATTCATTTCAT
1 GTTTGCCACAAAGGC-TTCATTTCAT
* **
97901099 GTTTCGCCACAAGGGCTTTTTTTCAT
1 GTTT-GCCACAAAGGCTTCATTTCAT
*
97901125 ATTATGCCACAAAGGCTATCATT
1 GTT-TGCCACAAAGGCT-TCATT
97901148 GCAGGGTTCG
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
26 25 0.64
27 14 0.36
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (25 bp):
GTTTGCCACAAAGGCTTCATTTCAT
Found at i:97902686 original size:29 final size:29
Alignment explanation
Indices: 97902654--97902712 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
97902644 TAAGTCATTG
97902654 GACGGATTATACTTTGCCAGACAAACTAT
1 GACGGATTATACTTTGCCAGACAAACTAT
97902683 GACGGATTATACTTTGCCAGACAAACTAT
1 GACGGATTATACTTTGCCAGACAAACTAT
97902712 G
1 G
97902713 TTACTACTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (29 bp):
GACGGATTATACTTTGCCAGACAAACTAT
Found at i:97907208 original size:35 final size:35
Alignment explanation
Indices: 97907169--97907239 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
97907159 TTTTCTATCT
97907169 AGTTGCTAAATTTAAAAAAATAACTACAAGATAAA
1 AGTTGCTAAATTTAAAAAAATAACTACAAGATAAA
*
97907204 AGTTGCTAATTTTAAAAAAATAACTACAAGATAAA
1 AGTTGCTAAATTTAAAAAAATAACTACAAGATAAA
97907239 A
1 A
97907240 TGATCCTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.56, C:0.08, G:0.08, T:0.27
Consensus pattern (35 bp):
AGTTGCTAAATTTAAAAAAATAACTACAAGATAAA
Found at i:97912724 original size:26 final size:26
Alignment explanation
Indices: 97912693--97912800 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
97912683 TGAAATGCCC
*
97912693 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
97912719 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
97912745 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
97912771 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
97912797 ATCA
1 ATCA
97912801 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:97914017 original size:21 final size:21
Alignment explanation
Indices: 97913978--97914025 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 21
97913968 GGCACGTTAT
*
97913978 TTTTTGTTCTGTTTCTTCTTG
1 TTTTTGTTCTGTGTCTTCTTG
*
97913999 ATTTTTGTTCT-TGTGTTCTTG
1 -TTTTTGTTCTGTGTCTTCTTG
97914020 TTTTTG
1 TTTTTG
97914026 CTTTTTGGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 6 0.25
21 8 0.33
22 10 0.42
ACGTcount: A:0.02, C:0.10, G:0.17, T:0.71
Consensus pattern (21 bp):
TTTTTGTTCTGTGTCTTCTTG
Found at i:97915709 original size:21 final size:21
Alignment explanation
Indices: 97915685--97915724 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
97915675 CTGCAATATC
*
97915685 TATTTGACTATTTGATTGAAT
1 TATTTGACTATCTGATTGAAT
*
97915706 TATTTGACTGTCTGATTGA
1 TATTTGACTATCTGATTGA
97915725 TTGAGGAGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.07, G:0.17, T:0.50
Consensus pattern (21 bp):
TATTTGACTATCTGATTGAAT
Found at i:97921550 original size:50 final size:51
Alignment explanation
Indices: 97921457--97921618 Score: 154
Period size: 50 Copynumber: 3.3 Consensus size: 51
97921447 TGTGCAGTGT
* * * * **
97921457 TAAGTGCAGGCT-ACTACGTGTACCAGATTGATAGGTCGTATGTGTAGTAC
1 TAAGTGCAGGCTAACTACCTATACCAGAATGATAAGTCACATGTGTAGTAC
* * * *
97921507 TAAGTGCAGGCTAA-TACGTGTATCA-AATGGTCAAGTCACATGTGTAGTAC
1 TAAGTGCAGGCTAACTACCTATACCAGAATGAT-AAGTCACATGTGTAGTAC
* * * *
97921557 T-AGTACAGG-AAACTACCTATACCAGATTGATAGGTCACATGTGTAGTAC
1 TAAGTGCAGGCTAACTACCTATACCAGAATGATAAGTCACATGTGTAGTAC
97921606 TAAGTGCAGGCTA
1 TAAGTGCAGGCTA
97921619 CTATGCATAC
Statistics
Matches: 90, Mismatches: 16, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
48 2 0.02
49 37 0.41
50 49 0.54
51 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.28
Consensus pattern (51 bp):
TAAGTGCAGGCTAACTACCTATACCAGAATGATAAGTCACATGTGTAGTAC
Found at i:97921853 original size:16 final size:16
Alignment explanation
Indices: 97921832--97921863 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
97921822 AGAATGGAGT
97921832 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
97921848 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
97921864 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:97932946 original size:46 final size:46
Alignment explanation
Indices: 97932892--97933067 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
97932882 TGGTTGAGCA
97932892 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
97932938 TCCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GAT-CTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
97932983 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
97933031 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
97933068 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:97933048 original size:93 final size:93
Alignment explanation
Indices: 97932889--97933060 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
97932879 GGATGGTTGA
* *
97932889 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
97932954 TGAGTCCGAGTTCGTGAGATCTAACTAG
66 TGAGTCCGAGTTCGTGAGATCTAACTAG
* *
97932982 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
97933047 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
97933061 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATCTAACTAG
Found at i:97934895 original size:150 final size:150
Alignment explanation
Indices: 97934624--97934925 Score: 586
Period size: 150 Copynumber: 2.0 Consensus size: 150
97934614 GAGGAGGAGA
*
97934624 AAGGGGTCGGGAAGCCTTTCTCCAAATGATGAGTGCATGGTACATTGAGTTCGTTCGTACGAACC
1 AAGGGGTCGGGAAGCCTTTCTCCAAATGATGAGTGCATGGTACACTGAGTTCGTTCGTACGAACC
97934689 CAAATGTACAACCTCCCCCACCTCCCCCAATTCCTCAACCTGTACCCCCGATGCCTCAAGGTATG
66 CAAATGTACAACCTCCCCCACCTCCCCCAATTCCTCAACCTGTACCCCCGATGCCTCAAGGTATG
97934754 GATCTGATGAAATTGCACAG
131 GATCTGATGAAATTGCACAG
97934774 AAGGGGTCGGGAAGCCTTTCTCCAAATGATGAGTGCATGGTACACTGAGTTCGTTCGTACGAACC
1 AAGGGGTCGGGAAGCCTTTCTCCAAATGATGAGTGCATGGTACACTGAGTTCGTTCGTACGAACC
97934839 CAAATGTACAACCTCCCCCACCTCCCCCAATTCCTCAACCTGTACCCCCGATGCCTCAAGGTATG
66 CAAATGTACAACCTCCCCCACCTCCCCCAATTCCTCAACCTGTACCCCCGATGCCTCAAGGTATG
*
97934904 GATCTGATGAAATTTCACAG
131 GATCTGATGAAATTGCACAG
97934924 AA
1 AA
97934926 CTCCAGTTGA
Statistics
Matches: 150, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 150 1.00
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.23
Consensus pattern (150 bp):
AAGGGGTCGGGAAGCCTTTCTCCAAATGATGAGTGCATGGTACACTGAGTTCGTTCGTACGAACC
CAAATGTACAACCTCCCCCACCTCCCCCAATTCCTCAACCTGTACCCCCGATGCCTCAAGGTATG
GATCTGATGAAATTGCACAG
Found at i:97939804 original size:58 final size:58
Alignment explanation
Indices: 97939740--97939854 Score: 194
Period size: 58 Copynumber: 2.0 Consensus size: 58
97939730 CATTAGGCCA
*
97939740 AAATTTCAAGGATTATCCATAGCTAGGGTTTGTTGCAATCTTCCAAGCTCCATAGTAG
1 AAATTTCAAGGATTATCCATAGCTAGGGTTTGTTGCAAGCTTCCAAGCTCCATAGTAG
* * *
97939798 AAATTTCAAGGGTTCTCCATAGCTAGGGTTTGTTTCAAGCTTCCAAGCTCCATAGTA
1 AAATTTCAAGGATTATCCATAGCTAGGGTTTGTTGCAAGCTTCCAAGCTCCATAGTA
97939855 AGTGATTCCA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 53 1.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (58 bp):
AAATTTCAAGGATTATCCATAGCTAGGGTTTGTTGCAAGCTTCCAAGCTCCATAGTAG
Found at i:97940729 original size:46 final size:45
Alignment explanation
Indices: 97940679--97940854 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 45
97940669 TGATTGAGCA
97940679 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
97940725 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
* *
97940770 CATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
97940818 TCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
97940855 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:97940835 original size:93 final size:93
Alignment explanation
Indices: 97940676--97940847 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
97940666 GGATGATTGA
* *
97940676 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
97940741 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
97940769 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGTCTGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
97940834 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
97940848 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:97947081 original size:19 final size:17
Alignment explanation
Indices: 97947059--97947105 Score: 51
Period size: 19 Copynumber: 2.7 Consensus size: 17
97947049 TAATAGGTAT
97947059 AATAATACTAAATAATAA
1 AATAATACTAAATAA-AA
*
97947077 CAATAATAGT-AATAAAA
1 -AATAATACTAAATAAAA
*
97947094 ACTAATACTAAA
1 AATAATACTAAA
97947106 ATTCAAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
16 7 0.29
17 4 0.17
18 5 0.21
19 8 0.33
ACGTcount: A:0.64, C:0.09, G:0.02, T:0.26
Consensus pattern (17 bp):
AATAATACTAAATAAAA
Found at i:97948004 original size:46 final size:46
Alignment explanation
Indices: 97947937--97948029 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
97947927 CTGTGTCTAT
97947937 GTAGGGAAAATTAAAATTGAAAAAAATTAGCTCTAGTATCCACATA
1 GTAGGGAAAATTAAAATTGAAAAAAATTAGCTCTAGTATCCACATA
97947983 GTAGGGAAAATTAAAATTGAAAAAAATTAGCTCTAGTATCCACATA
1 GTAGGGAAAATTAAAATTGAAAAAAATTAGCTCTAGTATCCACATA
97948029 G
1 G
97948030 CCTGAGACAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.47, C:0.11, G:0.16, T:0.26
Consensus pattern (46 bp):
GTAGGGAAAATTAAAATTGAAAAAAATTAGCTCTAGTATCCACATA
Found at i:97948206 original size:14 final size:15
Alignment explanation
Indices: 97948169--97948210 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
97948159 AAAAAAAAAG
*
97948169 AATAATAATAACATGA
1 AATAAAAATAA-ATGA
*
97948185 AATTAAAATAAAT-A
1 AATAAAAATAAATGA
97948199 AATAAAAATAAA
1 AATAAAAATAAA
97948211 AGCACTCGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
14 12 0.52
15 2 0.09
16 9 0.39
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (15 bp):
AATAAAAATAAATGA
Found at i:97951032 original size:20 final size:20
Alignment explanation
Indices: 97950981--97951032 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
97950971 ATTAAAATGT
97950981 AAAA-ACTAAATAAAAAACA
1 AAAATACTAAATAAAAAACA
* *
97951000 AAAATATTGAAAT-AAAAATA
1 AAAATACT-AAATAAAAAACA
97951020 AAAATGACTAAAT
1 AAAAT-ACTAAAT
97951033 TAATATAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
19 4 0.15
20 17 0.63
21 6 0.22
ACGTcount: A:0.71, C:0.06, G:0.04, T:0.19
Consensus pattern (20 bp):
AAAATACTAAATAAAAAACA
Found at i:97956764 original size:34 final size:34
Alignment explanation
Indices: 97956709--97956792 Score: 136
Period size: 34 Copynumber: 2.5 Consensus size: 34
97956699 TTTTTTAATA
97956709 TAATT-AAAT-TTCATAATTATTTTTGTACACTTT
1 TAATTCAAATATT-ATAATTATTTTTGTACACTTT
*
97956742 TGATTCAAATATTATAATTATTTTTGTACACTTT
1 TAATTCAAATATTATAATTATTTTTGTACACTTT
97956776 TAATTCAAATATTATAA
1 TAATTCAAATATTATAA
97956793 CATTTTTTAT
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
33 4 0.09
34 41 0.87
35 2 0.04
ACGTcount: A:0.37, C:0.08, G:0.04, T:0.51
Consensus pattern (34 bp):
TAATTCAAATATTATAATTATTTTTGTACACTTT
Found at i:97961371 original size:33 final size:33
Alignment explanation
Indices: 97961326--97961422 Score: 92
Period size: 33 Copynumber: 2.9 Consensus size: 33
97961316 GTTACACAAT
* *
97961326 TGGGCCTAAGCCCATATCAGTCGCAATATCA-A
1 TGGGCCTTAGCCCATATCAGTAGCAATATCAGA
* *
97961358 TGTGGCCTTAGCCCA-ATACAGTATCAGTATCAGTA
1 TG-GGCCTTAGCCCATAT-CAGTAGCAATATCAG-A
* *
97961393 TGGGCCTTAGCCCATCTCAGTA-CAGTATCA
1 TGGGCCTTAGCCCATATCAGTAGCAATATCA
97961423 TAAATGCATA
Statistics
Matches: 55, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
32 4 0.07
33 30 0.55
34 17 0.31
35 4 0.07
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (33 bp):
TGGGCCTTAGCCCATATCAGTAGCAATATCAGA
Found at i:97961484 original size:22 final size:23
Alignment explanation
Indices: 97961445--97961488 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
97961435 AAGATCCTAC
*
97961445 CCATCCATCCTCTACACTCCACT
1 CCATCCAGCCTCTACACTCCACT
97961468 CCATCCAGCC-CTACACTCCAC
1 CCATCCAGCCTCTACACTCCAC
97961489 GTGGGGATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.23, C:0.55, G:0.02, T:0.20
Consensus pattern (23 bp):
CCATCCAGCCTCTACACTCCACT
Found at i:97963982 original size:13 final size:14
Alignment explanation
Indices: 97963964--97963997 Score: 52
Period size: 13 Copynumber: 2.4 Consensus size: 14
97963954 GCTTTGGACT
97963964 TTTTGGCTTTT-AA
1 TTTTGGCTTTTGAA
97963977 TTTTGGCTTTTGAA
1 TTTTGGCTTTTGAA
97963991 TTGTTGG
1 TT-TTGG
97963998 TGTTTTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 4 0.21
15 4 0.21
ACGTcount: A:0.12, C:0.06, G:0.24, T:0.59
Consensus pattern (14 bp):
TTTTGGCTTTTGAA
Found at i:97965645 original size:25 final size:26
Alignment explanation
Indices: 97965603--97965655 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
97965593 TGAATATAAG
*
97965603 TAAAATTTTGAAAATTTCATATTTAAA
1 TAAAATTTTG-AAATTTCAAATTTAAA
*
97965630 TAAAATTTTG-ACTTTCAAATTTAAA
1 TAAAATTTTGAAATTTCAAATTTAAA
97965655 T
1 T
97965656 TCTTGTTCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 14 0.58
27 10 0.42
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.45
Consensus pattern (26 bp):
TAAAATTTTGAAATTTCAAATTTAAA
Found at i:97970072 original size:44 final size:43
Alignment explanation
Indices: 97969934--97970092 Score: 162
Period size: 43 Copynumber: 3.7 Consensus size: 43
97969924 AGCTTGTACA
* * *
97969934 ATGCCAACGTCCCAGACGTGGTCTTTCATGT-AATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCAAA-ATCG
* * * * * *
97969977 ATGTCACTGTCCTAGACAGGGTCTTGCATG-AAATC-ATATACG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCAAAAT-CG
*
97970019 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAAATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCA-AAATCG
**
97970063 ATGCCAATGTCCCAGATGTGGTCTTACATG
1 ATGCCAATGTCCCAGACATGGTCTTACATG
97970093 ATAACACATA
Statistics
Matches: 93, Mismatches: 18, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
41 2 0.02
42 27 0.29
43 32 0.34
44 29 0.31
45 3 0.03
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCAAAATCG
Found at i:97970087 original size:86 final size:85
Alignment explanation
Indices: 97969934--97970093 Score: 198
Period size: 86 Copynumber: 1.9 Consensus size: 85
97969924 AGCTTGTACA
* * * * * *
97969934 ATGCCAACGTCCCAGACGTGGTCTTTCATGTAATCAAATATCGATGTCACTGTCCTAGACAGGGT
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCAATGTCCCAGACAGGGT
*
97969999 CTTGCATGAAATCATATACG
66 CTTACATGAAATCATATACG
* *
97970019 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAA-ATCGATGCCAATGTCCCAGA-TGT
1 ATGCCAACGTCCCAGACATGGTCTTACACGT-AATCA-AATATCGATGCCAATGTCCCAGACAG-
97970082 GGTCTTACATGA
63 GGTCTTACATGA
97970094 TAACACATAT
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
85 28 0.44
86 33 0.52
87 2 0.03
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.27
Consensus pattern (85 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCAATGTCCCAGACAGGGT
CTTACATGAAATCATATACG
Found at i:97976458 original size:99 final size:101
Alignment explanation
Indices: 97976339--97976565 Score: 271
Period size: 101 Copynumber: 2.3 Consensus size: 101
97976329 TAGTACGCAG
*
97976339 AGTAG-CTAGCACTTAGTACTACACATGCGA-CCAA-CAATCCGGTACACGTAGTAGCCTGCACT
1 AGTAGCCT-GCACTTAGTACTACACATGCGATCCAAGCAATCCGGTACACATAGTAGCCTGCACT
* * *
97976401 TAGTACCATACACGTGACCTAACCATCTGATACACGT
65 TAGTACCACACACGCGACCTAACCATCTGATACACCT
* * ** *** * *
97976438 AGTAGCCTGCACTTAGTACTACACACGTGATTGAAGTTGTCGGGTACGCATAGTAGCCTGCACTT
1 AGTAGCCTGCACTTAGTACTACACATGCGATCCAAGCAATCCGGTACACATAGTAGCCTGCACTT
* * * *
97976503 AGTACTACACATGCGACCTAACTATCTGCTACACCT
66 AGTACCACACACGCGACCTAACCATCTGATACACCT
97976539 AGTAGCCTGCACTTAGTACTACACATG
1 AGTAGCCTGCACTTAGTACTACACATG
97976566 TGTTCTTACA
Statistics
Matches: 107, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
99 25 0.23
100 4 0.04
101 78 0.73
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.25
Consensus pattern (101 bp):
AGTAGCCTGCACTTAGTACTACACATGCGATCCAAGCAATCCGGTACACATAGTAGCCTGCACTT
AGTACCACACACGCGACCTAACCATCTGATACACCT
Found at i:97976564 original size:50 final size:50
Alignment explanation
Indices: 97976339--97976565 Score: 244
Period size: 50 Copynumber: 4.5 Consensus size: 50
97976329 TAGTACGCAG
* *
97976339 AGTAG-CTAGCACTTAGTACTACACATGCGACC-AACAATCCGGTACACGT
1 AGTAGCCT-GCACTTAGTACTACACATGCGACCTAACTATCTGGTACACGT
* * * * * *
97976388 AGTAGCCTGCACTTAGTACCATACACGTGACCTAACCATCTGATACACGT
1 AGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACGT
* * * * * * * *
97976438 AGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGTTGTCGGGTACGCAT
1 AGTAGCCTGCACTTAGTACTACACATGCGACCT-AA-CTATCTGGTACACGT
* *
97976489 AGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGCTACACCT
1 AGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACGT
97976539 AGTAGCCTGCACTTAGTACTACACATG
1 AGTAGCCTGCACTTAGTACTACACATG
97976566 TGTTCTTACA
Statistics
Matches: 147, Mismatches: 26, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
49 26 0.18
50 82 0.56
51 38 0.26
52 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.25
Consensus pattern (50 bp):
AGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACGT
Found at i:97979319 original size:15 final size:15
Alignment explanation
Indices: 97979279--97979319 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
97979269 GCTAGAATAT
*
97979279 AGAAATCCAACATAA
1 AGAAATCCAATATAA
97979294 AGAAATCCAATAT-A
1 AGAAATCCAATATAA
97979308 AGAAAATCCAAT
1 AG-AAATCCAAT
97979320 CAGACTGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 3 0.12
15 21 0.88
ACGTcount: A:0.59, C:0.17, G:0.07, T:0.17
Consensus pattern (15 bp):
AGAAATCCAATATAA
Found at i:97988046 original size:25 final size:25
Alignment explanation
Indices: 97988017--97988066 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
97988007 CCTTATAACA
* * *
97988017 TGAAAATGACCGTTTTGCCCCTAGG
1 TGAAAATGACCATTATACCCCTAGG
97988042 TGAAAATGACCATTATACCCCTAGG
1 TGAAAATGACCATTATACCCCTAGG
97988067 GTTTATATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (25 bp):
TGAAAATGACCATTATACCCCTAGG
Found at i:97988135 original size:20 final size:20
Alignment explanation
Indices: 97988112--97988168 Score: 114
Period size: 20 Copynumber: 2.9 Consensus size: 20
97988102 AACATGGTAT
97988112 GTATGATATGCACATGACAC
1 GTATGATATGCACATGACAC
97988132 GTATGATATGCACATGACAC
1 GTATGATATGCACATGACAC
97988152 GTATGATATGCACATGA
1 GTATGATATGCACATGA
97988169 GGTATTCATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (20 bp):
GTATGATATGCACATGACAC
Found at i:97988246 original size:24 final size:24
Alignment explanation
Indices: 97988219--97988458 Score: 356
Period size: 24 Copynumber: 10.0 Consensus size: 24
97988209 GAGGAAGTGC
* *
97988219 AAAAGGGCTTATGCTCCAGTGATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
97988243 AAAAGGGCTTATGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATT
97988267 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
97988291 AAAAGGGATTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
97988315 GAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
97988339 AAAAGGGCTTATACCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
97988363 GAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
97988387 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
97988411 AAAAGGGCTTTTTCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
97988435 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
97988459 ATGATAAAGC
Statistics
Matches: 195, Mismatches: 19, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
24 184 0.94
25 11 0.06
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:97997444 original size:43 final size:42
Alignment explanation
Indices: 97997372--97997785 Score: 357
Period size: 43 Copynumber: 9.6 Consensus size: 42
97997362 CAAAAGTTCA
* *
97997372 CGGCGTTTTTTAGAAAAAAACGCCGCTAAAGACCATGATCTTTAG
1 CGGCGTTTTTT---AAAAAACGCCGCTAAAGACCAGGACCTTTAG
* *
97997417 CAGCGTTTTTTACAAAAGCGCCGCTAAAGACCAGGACCTTTAG
1 CGGCGTTTTTTA-AAAAACGCCGCTAAAGACCAGGACCTTTAG
* ** * * *
97997460 CGGCGCTCATAAAAAAATGCCGCTAAAGACCAGGACCTATAG
1 CGGCGTTTTTTAAAAAACGCCGCTAAAGACCAGGACCTTTAG
* *
97997502 CAGCGTTTTTTATAAAAGCGCCGCTAAAGACCAGGACCTTTAG
1 CGGCGTTTTTTA-AAAAACGCCGCTAAAGACCAGGACCTTTAG
* * * * ** **
97997545 CGGCG-CTCTTAAAAAACCGCCACCAAAGAAGAGGACCTACAG
1 CGGCGTTTTTTAAAAAA-CGCCGCTAAAGACCAGGACCTTTAG
* * ** *
97997587 CGGCATTTTTTAAAAAAGTGCCGCTAAAAGTA-CA-GTTCTATAG
1 CGGCGTTTTTTAAAAAA-CGCCGCT-AAAG-ACCAGGACCTTTAG
* *
97997630 CGGCGTTTTTTATAAAAGCGCCGCCAAAGACCAGGACCTTTAG
1 CGGCGTTTTTTA-AAAAACGCCGCTAAAGACCAGGACCTTTAG
* * * *
97997673 CGGCGCTTATTTAAAAAACGCCGCTATAGACCAAGAACTTTAG
1 CGGCG-TTTTTTAAAAAACGCCGCTAAAGACCAGGACCTTTAG
* * * * *
97997716 CGGCGCTTTTATAAAAAACGCCGCTATAGACCTGTACTTTTAG
1 CGGCG-TTTTTTAAAAAACGCCGCTAAAGACCAGGACCTTTAG
*
97997759 CGGCGCTTTTGTAAAAAACGCCGCTAA
1 CGGCG-TTTTTTAAAAAACGCCGCTAA
97997786 TTTGCTCAGT
Statistics
Matches: 296, Mismatches: 63, Indels: 22
0.78 0.17 0.06
Matches are distributed among these distances:
41 5 0.02
42 68 0.23
43 197 0.67
44 15 0.05
45 11 0.04
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.23
Consensus pattern (42 bp):
CGGCGTTTTTTAAAAAACGCCGCTAAAGACCAGGACCTTTAG
Found at i:97997528 original size:85 final size:84
Alignment explanation
Indices: 97997385--97997785 Score: 365
Period size: 85 Copynumber: 4.7 Consensus size: 84
97997375 CGTTTTTTAG
* * *
97997385 AAAAAAACGCCGCTAAAGACCATGATCTTTAGCAGCGTTTTTTACAAAAGCGCCGCTAAAGACCA
1 AAAAAAACGCCGCTAAAGACCAGGACCTATAGCAGCGTTTTTTA-AAAAGCGCCGCTAAAGACCA
*
97997450 GGACCTTTAGCGGCGCTCAT
65 GGACCTTTAGCGGCGCTCTT
*
97997470 AAAAAAATGCCGCTAAAGACCAGGACCTATAGCAGCGTTTTTTATAAAAGCGCCGCTAAAGACCA
1 AAAAAAACGCCGCTAAAGACCAGGACCTATAGCAGCGTTTTTTA-AAAAGCGCCGCTAAAGACCA
97997535 GGACCTTTAGCGGCGCTCTT
65 GGACCTTTAGCGGCGCTCTT
* * * ** * * * *
97997555 AAAAAACCGCCACCAAAGAAGAGGACCTACAGCGGCATTTTTTAAAAAAGTGCCGCTAAAAGTA-
1 AAAAAAACGCCGCTAAAGACCAGGACCTATAGCAGCGTTTTTT-AAAAAGCGCCGCT-AAAG-AC
** * * *
97997619 CA-GTTCTATAGCGGCGTTTTTT
63 CAGGACCTTTAGCGGCG-CTCTT
* * * * * * * *
97997641 ATAAAAGCGCCGCCAAAGACCAGGACCTTTAGCGGCGCTTATTTAAAAAACGCCGCTATAGACCA
1 AAAAAAACGCCGCTAAAGACCAGGACCTATAGCAGCG-TTTTTTAAAAAGCGCCGCTAAAGACCA
* * *
97997706 AGAACTTTAGCGGCGCTTTT
65 GGACCTTTAGCGGCGCTCTT
* * * * * * * *
97997726 ATAAAAAACGCCGCTATAGACCTGTACTTTTAGCGGCGCTTTTGTAAAAAACGCCGCTAA
1 A-AAAAAACGCCGCTAAAGACCAGGACCTATAGCAGCG-TTTTTTAAAAAGCGCCGCTAA
97997786 TTTGCTCAGT
Statistics
Matches: 261, Mismatches: 47, Indels: 15
0.81 0.15 0.05
Matches are distributed among these distances:
84 1 0.00
85 145 0.56
86 109 0.42
87 6 0.02
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.22
Consensus pattern (84 bp):
AAAAAAACGCCGCTAAAGACCAGGACCTATAGCAGCGTTTTTTAAAAAGCGCCGCTAAAGACCAG
GACCTTTAGCGGCGCTCTT
Found at i:97997774 original size:128 final size:127
Alignment explanation
Indices: 97997372--97997785 Score: 415
Period size: 128 Copynumber: 3.2 Consensus size: 127
97997362 CAAAAGTTCA
* * * * * * *
97997372 CGGCGTTTTTTAGAAAAAAACGCCGCTAAAGACCATGATCTTTAGCAGCGTTTTTTACAAAAGCG
1 CGGCGTTTTTT--ATAAAAGCGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTTA-AAAAACG
** *
97997437 CCGCTAAAGACCAGGACCTTTAGCGGCGCTCATA-AAAAAATGCCGCTAAAGACCAGGACCTATA
63 CCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTATAAAAAATGCCGCTAAAGACCAGTA-CTATA
97997501 G
127 G
* *
97997502 CAGCGTTTTTTATAAAAGCGCCGCTAAAGACCAGGACCTTTAGCGGCGC-TCTTAAAAAACCGCC
1 CGGCGTTTTTTATAAAAGCGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTTAAAAAA-CGCC
* * ** ** * * *
97997566 ACCAAAGAAGAGGACCTACAGCGGC-ATTTTTTAAAAAAGTGCCGCTAAAAGTA-CAGTTCTATA
65 GCTAAAGACCAGGACCTTTAGCGGCGCTTTTATAAAAAA-TGCCGCT-AAAG-ACCAGTACTATA
97997629 G
127 G
*
97997630 CGGCGTTTTTTATAAAAGCGCCGCCAAAGACCAGGACCTTTAGCGGCGCTTATTTAAAAAACGCC
1 CGGCGTTTTTTATAAAAGCGCCGCTAAAGACCAGGACCTTTAGCGGCGCTT-TTTAAAAAACGCC
* * * * * * *
97997695 GCTATAGACCAAGAACTTTAGCGGCGCTTTTATAAAAAACGCCGCTATAGACCTGTACTTTTAG
65 GCTAAAGACCAGGACCTTTAGCGGCGCTTTTATAAAAAATGCCGCTAAAGACCAGTAC-TATAG
* *
97997759 CGGCGCTTTTGTA-AAAAACGCCGCTAA
1 CGGCG-TTTTTTATAAAAGCGCCGCTAA
97997786 TTTGCTCAGT
Statistics
Matches: 230, Mismatches: 43, Indels: 23
0.78 0.15 0.08
Matches are distributed among these distances:
126 6 0.03
127 34 0.15
128 99 0.43
129 55 0.24
130 36 0.16
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.23
Consensus pattern (127 bp):
CGGCGTTTTTTATAAAAGCGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTTAAAAAACGCCG
CTAAAGACCAGGACCTTTAGCGGCGCTTTTATAAAAAATGCCGCTAAAGACCAGTACTATAG
Found at i:97998696 original size:18 final size:18
Alignment explanation
Indices: 97998664--97998701 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
97998654 TACAATATAG
97998664 TAGTAAAAATATTATTTAA
1 TAGTAAAAATATTA-TTAA
*
97998683 TAGTAAAAA-GTTATTAA
1 TAGTAAAAATATTATTAA
97998700 TA
1 TA
97998702 CTTGATAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (18 bp):
TAGTAAAAATATTATTAA
Found at i:97999030 original size:14 final size:15
Alignment explanation
Indices: 97999002--97999034 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
97998992 GGCTTATGGG
97999002 TTTTTTAAAATATTC
1 TTTTTTAAAATATTC
*
97999017 TTTTTTCAAA-ATTC
1 TTTTTTAAAATATTC
97999031 TTTT
1 TTTT
97999035 ATTGTCTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.27, C:0.09, G:0.00, T:0.64
Consensus pattern (15 bp):
TTTTTTAAAATATTC
Found at i:98004278 original size:21 final size:21
Alignment explanation
Indices: 98004254--98004293 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
98004244 AAATTAATTC
*
98004254 ATACTTAAGTTGAATCAAATA
1 ATACTTAAGTTGAACCAAATA
98004275 ATACTTAAGTTGAACCAAA
1 ATACTTAAGTTGAACCAAA
98004294 ATATAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.30
Consensus pattern (21 bp):
ATACTTAAGTTGAACCAAATA
Found at i:98004882 original size:611 final size:611
Alignment explanation
Indices: 98003719--98004978 Score: 2434
Period size: 611 Copynumber: 2.1 Consensus size: 611
98003709 TGATCAATAT
98003719 TAATACTATTTTGATAAAAATTAGTTATAATATATTTAAACAATGATCAATAATGTTATGTTGAT
1 TAATACTATTTTGATAAAAATTAGTTATAATATATTTAAACAATGATCAATAATGTTATGTTGAT
98003784 AAAATAATTTATAATTGGTCATTCAGTCGTTGAAATTTTTAATTCTTTTTTAAGGTCAATAGAAT
66 AAAATAATTTATAATTGGTCATTCAGTCGTTGAAATTTTTAATTCTTTTTTAAGGTCAATAGAAT
98003849 TATTTATAAGCTCCATAGAACTTTTTTGGAAATCTTATTAATATAAAATAATTTTAAAGACATTT
131 TATTTATAAGCTCCATAGAACTTTTTTGGAAATCTTATTAATATAAAATAATTTTAAAGACATTT
98003914 AAAAATAATAGCGATATTAAAATCAAACATGTTTAATATAAAAAATAGTAATTTGAATATAATAA
196 AAAAATAATAGCGATATTAAAATCAAACATGTTTAATATAAAAAATAGTAATTTGAATATAATAA
98003979 TATCAAGAAAGAATCGTAGTTTAATTTTTATAAGGAAACTGGAAATAAATTAAGGTTATATAAAT
261 TATCAAGAAAGAATCGTAGTTTAATTTTTATAAGGAAACTGGAAATAAATTAAGGTTATATAAAT
*
98004044 ATTCAATAGCGATAAAACTTTTTTCAATTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGT
326 ATTCAATAGCGATAAAACTTTTTTCAATTCTTTTTGAATTTTTTAAGATTCATCATACCTGGCGT
*
98004109 TGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCA
391 TGTTACACCTAGGGAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCAGGTTTCCA
98004174 GCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGGCAAGCAAGCTACATATATGG
456 GCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGGCAAGCAAGCTACATATATGG
98004239 TAATAAAATTAATTCATACTTAAGTTGAATCAAATAATACTTAAGTTGAACCAAAATATAAAAAC
521 TAATAAAATTAATTCATACTTAAGTTGAATCAAATAATACTTAAGTTGAACCAAAATATAAAAAC
98004304 TTATTCATACTTCAAATAATAATTAA
586 TTATTCATACTTCAAATAATAATTAA
98004330 TAATACTATTTTGATAAAAATTAGTTATAATATATTTAAACAATGATCAATAATGTTATGTTGAT
1 TAATACTATTTTGATAAAAATTAGTTATAATATATTTAAACAATGATCAATAATGTTATGTTGAT
98004395 AAAATAATTTATAATTGGTCATTCAGTCGTTGAAATTTTTAATTCTTTTTTAAGGTCAATAGAAT
66 AAAATAATTTATAATTGGTCATTCAGTCGTTGAAATTTTTAATTCTTTTTTAAGGTCAATAGAAT
98004460 TATTTATAAGCTCCATAGAACTTTTTTGGAAATCTTATTAATATAAAATAATTTTAAAGACATTT
131 TATTTATAAGCTCCATAGAACTTTTTTGGAAATCTTATTAATATAAAATAATTTTAAAGACATTT
98004525 AAAAATAATAGCGATATTAAAATCAAACATGTTTAATATAAAAAATAGTAATTTGAATATAATAA
196 AAAAATAATAGCGATATTAAAATCAAACATGTTTAATATAAAAAATAGTAATTTGAATATAATAA
* *
98004590 TATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAACTTGAAATAAATTAAGGTTATATAAAT
261 TATCAAGAAAGAATCGTAGTTTAATTTTTATAAGGAAACTGGAAATAAATTAAGGTTATATAAAT
* * * *
98004655 ATTCAATAGCGATAGAACTTTTTTTAATTCTTTTTGAATTTTTTAAGATTCATTATACCTGGTGT
326 ATTCAATAGCGATAAAACTTTTTTCAATTCTTTTTGAATTTTTTAAGATTCATCATACCTGGCGT
98004720 TGTTACACCTAGGGAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCAGGTTTCCA
391 TGTTACACCTAGGGAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCAGGTTTCCA
98004785 GCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGGCAAGCAAGCTACATATATGG
456 GCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGGCAAGCAAGCTACATATATGG
98004850 TAATAAAATTAATTCATACTTAAGTTGAATCAAATAATACTTAAGTTGAACCAAAATATAAAAAC
521 TAATAAAATTAATTCATACTTAAGTTGAATCAAATAATACTTAAGTTGAACCAAAATATAAAAAC
98004915 TTATTCATACTTCAAATAATAATTAA
586 TTATTCATACTTCAAATAATAATTAA
98004941 TAATACTATTTTGATAAAAATTAGTTATAA-AT-TTTAAA
1 TAATACTATTTTGATAAAAATTAGTTATAATATATTTAAA
98004979 GACATTTAAA
Statistics
Matches: 641, Mismatches: 8, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
609 6 0.01
610 2 0.00
611 633 0.99
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.37
Consensus pattern (611 bp):
TAATACTATTTTGATAAAAATTAGTTATAATATATTTAAACAATGATCAATAATGTTATGTTGAT
AAAATAATTTATAATTGGTCATTCAGTCGTTGAAATTTTTAATTCTTTTTTAAGGTCAATAGAAT
TATTTATAAGCTCCATAGAACTTTTTTGGAAATCTTATTAATATAAAATAATTTTAAAGACATTT
AAAAATAATAGCGATATTAAAATCAAACATGTTTAATATAAAAAATAGTAATTTGAATATAATAA
TATCAAGAAAGAATCGTAGTTTAATTTTTATAAGGAAACTGGAAATAAATTAAGGTTATATAAAT
ATTCAATAGCGATAAAACTTTTTTCAATTCTTTTTGAATTTTTTAAGATTCATCATACCTGGCGT
TGTTACACCTAGGGAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCAGGTTTCCA
GCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGGCAAGCAAGCTACATATATGG
TAATAAAATTAATTCATACTTAAGTTGAATCAAATAATACTTAAGTTGAACCAAAATATAAAAAC
TTATTCATACTTCAAATAATAATTAA
Found at i:98004889 original size:21 final size:21
Alignment explanation
Indices: 98004865--98004904 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
98004855 AAATTAATTC
*
98004865 ATACTTAAGTTGAATCAAATA
1 ATACTTAAGTTGAACCAAATA
98004886 ATACTTAAGTTGAACCAAA
1 ATACTTAAGTTGAACCAAA
98004905 ATATAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.30
Consensus pattern (21 bp):
ATACTTAAGTTGAACCAAATA
Found at i:98005543 original size:164 final size:160
Alignment explanation
Indices: 98005260--98005630 Score: 609
Period size: 164 Copynumber: 2.3 Consensus size: 160
98005250 GCAACCCGTT
* * * *
98005260 AGGTTTTCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAAGTTGGAGAGAAGGTCAGC
1 AGGTTTCCAGCTTATATACTTTGAATCTTTAAAATATTTAAAATAAAGATGAAGAGAAGGTCAGC
98005325 TATTGTTGTAATTATAATGGACAAGCAAGCTACAGATATGGTAATAAAATTAATTCATACTTATT
66 TATTGTTGTAATTATAATGGACAAGCAAGCTACAGATATGGTAATAAAATTAATTCATACTTATT
98005390 CATACTTCAAATAATTAATACTATAAGGTC
131 CATACTTCAAATAATTAATACTATAAGGTC
*
98005420 AGGTTGGTTTCCAGCTTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAAT-AAGAGAAGG
1 A----GGTTTCCAGCTTATATACTTTGAATCTTTAAAATATTTAAAATAAAG-ATGAAGAGAAGG
98005484 TCAGCTATTGTTGTAATTATAATGGACAAGCAAGCTACAGATATGGTAATAAAATTAATTCATAC
61 TCAGCTATTGTTGTAATTATAATGGACAAGCAAGCTACAGATATGGTAATAAAATTAATTCATAC
98005549 TTATTCATACTTCAAATAATTAATACTATAAGGTC
126 TTATTCATACTTCAAATAATTAATACTATAAGGTC
98005584 AGGTTTCCAGCCTATATATATACTTTGAATCTTTAAAATATTTAAAA
1 AGGTTTCCAG-C--T-TATATACTTTGAATCTTTAAAATATTTAAAA
98005631 CGTACCTTAA
Statistics
Matches: 197, Mismatches: 5, Indels: 14
0.91 0.02 0.06
Matches are distributed among these distances:
160 10 0.05
161 1 0.01
163 1 0.01
164 184 0.93
165 1 0.01
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (160 bp):
AGGTTTCCAGCTTATATACTTTGAATCTTTAAAATATTTAAAATAAAGATGAAGAGAAGGTCAGC
TATTGTTGTAATTATAATGGACAAGCAAGCTACAGATATGGTAATAAAATTAATTCATACTTATT
CATACTTCAAATAATTAATACTATAAGGTC
Found at i:98007264 original size:21 final size:20
Alignment explanation
Indices: 98007240--98007279 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
98007230 GTTGGATAGA
*
98007240 AACATGAAAATAGACCAAAAG
1 AACATCAAAATA-ACCAAAAG
*
98007261 AACATCTAAATAACCAAAA
1 AACATCAAAATAACCAAAA
98007280 TATAACAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.62, C:0.17, G:0.07, T:0.12
Consensus pattern (20 bp):
AACATCAAAATAACCAAAAG
Found at i:98007400 original size:133 final size:133
Alignment explanation
Indices: 98007162--98007413 Score: 477
Period size: 133 Copynumber: 1.9 Consensus size: 133
98007152 GAATTCAACA
98007162 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
*
98007227 TAAGTTGGATAGAAACATGAAAATAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
66 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
98007292 ATT
131 ATT
98007295 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
* *
98007360 TAAGTTGGATAGAAACATGAAAGCAGACCAAAAGAACATCTAATTAACCAAAAT
66 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAAT
98007414 GGAATCACCA
Statistics
Matches: 116, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
133 116 1.00
ACGTcount: A:0.51, C:0.18, G:0.11, T:0.20
Consensus pattern (133 bp):
ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
ATT
Found at i:98010471 original size:10 final size:11
Alignment explanation
Indices: 98010450--98010500 Score: 57
Period size: 12 Copynumber: 4.3 Consensus size: 11
98010440 ACTAAACCAC
98010450 TTTTCATATATA
1 TTTT-ATATATA
98010462 TATTTATATATA
1 T-TTTATATATA
*
98010474 TTTTAAAATAATA
1 TTTT-ATAT-ATA
98010487 TTTTATATATA
1 TTTTATATATA
98010498 TTT
1 TTT
98010501 ATCTTATATA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
11 9 0.26
12 15 0.44
13 10 0.29
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (11 bp):
TTTTATATATA
Found at i:98010509 original size:15 final size:15
Alignment explanation
Indices: 98010489--98010520 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
98010479 AAATAATATT
*
98010489 TTATATATATTTATC
1 TTATATACATTTATC
98010504 TTATATACATTTATC
1 TTATATACATTTATC
98010519 TT
1 TT
98010521 TTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATACATTTATC
Found at i:98011671 original size:41 final size:41
Alignment explanation
Indices: 98011573--98011750 Score: 313
Period size: 41 Copynumber: 4.4 Consensus size: 41
98011563 GGGGTTATGG
98011573 GGTTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCCCT
1 GGTTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCCCT
98011614 -GTTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCCCT
1 GGTTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCCCT
* *
98011654 GGTTTTTAGCGGCGTTTTACCTAAAGCACCGCTAATGCCTT
1 GGTTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCCCT
* *
98011695 GGTTTTTAGCGGTGTTTTACCTAAAGCGCCGCTAGTGCCCT
1 GGTTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCCCT
98011736 GGTTTTTAGCGGCGT
1 GGTTTTTAGCGGCGT
98011751 GTTAGTAAAA
Statistics
Matches: 129, Mismatches: 7, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
40 40 0.31
41 89 0.69
ACGTcount: A:0.16, C:0.25, G:0.25, T:0.34
Consensus pattern (41 bp):
GGTTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCCCT
Found at i:98022243 original size:43 final size:43
Alignment explanation
Indices: 98022168--98022298 Score: 185
Period size: 43 Copynumber: 3.0 Consensus size: 43
98022158 ACATAGGATT
*
98022168 ATCGATATGTGATTACATATAAGACCACGTCTGGGACGTTGGC
1 ATCGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGC
* * *
98022211 ATCGATATGTGATTACGTGTATGACC-CTGTCTGGGAAAG-TGGC
1 ATCGATATGTGATTACATGTAAGACCAC-GTCTGGG-ACGTTGGC
*
98022254 ATTGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGC
1 ATCGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGC
98022297 AT
1 AT
98022299 TGTACAATAT
Statistics
Matches: 76, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
42 3 0.04
43 70 0.92
44 3 0.04
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (43 bp):
ATCGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGC
Found at i:98025474 original size:31 final size:30
Alignment explanation
Indices: 98025429--98025538 Score: 175
Period size: 31 Copynumber: 3.6 Consensus size: 30
98025419 TTTAACGGTT
98025429 ACTAGGCCGAAGCCTTTCCATAAATCATATC
1 ACTAGGCCGAAGCCTTT-CATAAATCATATC
* *
98025460 ACTGGGACGAAGCCTGTTCATAAATCATATC
1 ACTAGGCCGAAGCCT-TTCATAAATCATATC
98025491 ACTAGGCCGAAGCCTTTTCATAAATCATATC
1 ACTAGGCCGAAGCC-TTTCATAAATCATATC
98025522 ACTAGGCCGAAGCCTTT
1 ACTAGGCCGAAGCCTTT
98025539 ATTGTAAACG
Statistics
Matches: 73, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
30 3 0.04
31 67 0.92
32 3 0.04
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.26
Consensus pattern (30 bp):
ACTAGGCCGAAGCCTTTCATAAATCATATC
Found at i:98025609 original size:42 final size:42
Alignment explanation
Indices: 98025562--98025653 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
98025552 TGGCCCTTAG
98025562 GCCCATTTCAATATCACATGTAATGTCAATAAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATAAATGTATGCAA
* *
98025604 GCCCATTTCAGTATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATAAATGTATGCAA
98025646 GCCCATTT
1 GCCCATTT
98025654 GGGGAGACTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATAAATGTATGCAA
Found at i:98025872 original size:16 final size:16
Alignment explanation
Indices: 98025851--98025881 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
98025841 CCCATATCCC
*
98025851 ATGCAATATGTCATGT
1 ATGCAAAATGTCATGT
98025867 ATGCAAAATGTCATG
1 ATGCAAAATGTCATG
98025882 CCCATATTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.32
Consensus pattern (16 bp):
ATGCAAAATGTCATGT
Found at i:98026658 original size:27 final size:27
Alignment explanation
Indices: 98026628--98026692 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
98026618 GGCCATATTC
*
98026628 GTCATTTTACCATACAAGGG-TATTATG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
98026655 GTCACTTTACCCTACATGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
98026682 GTCTTTTTACC
1 GTCATTTTACC
98026693 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:98026838 original size:27 final size:27
Alignment explanation
Indices: 98026806--98026895 Score: 144
Period size: 27 Copynumber: 3.3 Consensus size: 27
98026796 GTCAAGGGTA
* * *
98026806 TTGGTAATTTCACAAACCAGTGGTATT
1 TTGGTAATTTTACAAACTAGGGGTATT
*
98026833 TCGGTAATTTTACAAACTAGGGGTATT
1 TTGGTAATTTTACAAACTAGGGGTATT
98026860 TTGGTAATTTTACAAACTAGGGGTATT
1 TTGGTAATTTTACAAACTAGGGGTATT
98026887 TTGGTAATT
1 TTGGTAATT
98026896 CTATCCTTAG
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
TTGGTAATTTTACAAACTAGGGGTATT
Found at i:98026864 original size:54 final size:54
Alignment explanation
Indices: 98026806--98026928 Score: 144
Period size: 54 Copynumber: 2.3 Consensus size: 54
98026796 GTCAAGGGTA
* *
98026806 TTGGTAATTTCACAAACCAGTGGTATTTCGGTAATTTTA-CAAAC-TAGGGG-TATT
1 TTGGTAATTTCACAAACCAGGGGTATTTCGGTAATTCTATC---CTTAGGGGATATT
* * *
98026860 TTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTATCCTTAGGGGATATT
1 TTGGTAATTTCACAAACCAGGGGTATTTCGGTAATTCTATCCTTAGGGGATATT
*
98026914 TTAGTAATTTCACAA
1 TTGGTAATTTCACAA
98026929 TCGAGGGTAA
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
52 1 0.02
53 6 0.10
54 51 0.86
55 1 0.02
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (54 bp):
TTGGTAATTTCACAAACCAGGGGTATTTCGGTAATTCTATCCTTAGGGGATATT
Found at i:98026962 original size:27 final size:27
Alignment explanation
Indices: 98026927--98027124 Score: 279
Period size: 27 Copynumber: 7.3 Consensus size: 27
98026917 GTAATTTCAC
* *
98026927 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
98026954 AATCAAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
98026981 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
***
98027008 AATCGAGGGTAAAACAATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
98027035 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
98027062 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * * *
98027089 AATTGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
98027116 AATTGAGGG
1 AATCGAGGG
98027125 CATTTCAGTA
Statistics
Matches: 155, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 155 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Done.