Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 296 of 322
Found at i:98354678 original size:29 final size:28
Alignment explanation
Indices: 98354636--98354696 Score: 104
Period size: 29 Copynumber: 2.1 Consensus size: 28
98354626 GTGAGCATGA
98354636 ATATAAGGTGATTTGGGCCTAATGGGCC
1 ATATAAGGTGATTTGGGCCTAATGGGCC
*
98354664 ATATAAAGGTGATTTGGGCCTGATGGGCC
1 ATAT-AAGGTGATTTGGGCCTAATGGGCC
98354693 ATAT
1 ATAT
98354697 GAATATGAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 4 0.13
29 27 0.87
ACGTcount: A:0.26, C:0.13, G:0.31, T:0.30
Consensus pattern (28 bp):
ATATAAGGTGATTTGGGCCTAATGGGCC
Found at i:98354709 original size:29 final size:29
Alignment explanation
Indices: 98354648--98354729 Score: 103
Period size: 29 Copynumber: 2.8 Consensus size: 29
98354638 ATAAGGTGAT
* * ** *
98354648 TTGGGCCTAATGGGCCATATAAAGGTGAT
1 TTGGGCCTGATGGGCCATATGAATATGAA
98354677 TTGGGCCTGATGGGCCATATGAATATGAA
1 TTGGGCCTGATGGGCCATATGAATATGAA
98354706 TTGGGCCCTG-TGGGCCATATGAAT
1 TTGGG-CCTGATGGGCCATATGAAT
98354730 GAGATGGGCC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 43 0.91
30 4 0.09
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.28
Consensus pattern (29 bp):
TTGGGCCTGATGGGCCATATGAATATGAA
Found at i:98354739 original size:27 final size:29
Alignment explanation
Indices: 98354658--98354753 Score: 92
Period size: 29 Copynumber: 3.4 Consensus size: 29
98354648 TTGGGCCTAA
* ** *
98354658 TGGGCCATATAAAGGTGATTTGGG-CCTG
1 TGGGCCATATGAATATGAATTGGGCCCTG
98354686 ATGGGCCATATGAATATGAATTGGGCCCTG
1 -TGGGCCATATGAATATGAATTGGGCCCTG
**
98354716 TGGGCCATATG-A-ATGAGA-TGGGCCAAG
1 TGGGCCATATGAATATGA-ATTGGGCCCTG
98354743 TGGGCCATATG
1 TGGGCCATATG
98354754 CATGTATGTA
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
27 22 0.37
28 2 0.03
29 31 0.53
30 4 0.07
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.25
Consensus pattern (29 bp):
TGGGCCATATGAATATGAATTGGGCCCTG
Found at i:98362582 original size:29 final size:29
Alignment explanation
Indices: 98362548--98362603 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
98362538 TCTTAGAGAT
98362548 TAAATCAATAACTTACTCAAAATCTTTCA
1 TAAATCAATAACTTACTCAAAATCTTTCA
*
98362577 TAAATCAATAACTTACTCGAAATCTTT
1 TAAATCAATAACTTACTCAAAATCTTT
98362604 GATCATTACA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.43, C:0.20, G:0.02, T:0.36
Consensus pattern (29 bp):
TAAATCAATAACTTACTCAAAATCTTTCA
Found at i:98364451 original size:49 final size:48
Alignment explanation
Indices: 98364348--98364514 Score: 217
Period size: 48 Copynumber: 3.5 Consensus size: 48
98364338 ATCTCAATCG
* ** *
98364348 ATGCCATGTCCCAGACATGGTTTTACATGAAATCACATATTGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* * *
98364396 ATGCCATGTCCCAGATATGGTCTTAGATGGGGATCACATATCGATGTCA
1 ATGCCATGTCCCAGACATGGTCTTACAT-GGGATCACATATCGATGCCA
* * *
98364445 ATGCCATGTTCCAAACATGGTCTTACATAGGATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* *
98364493 ATGCCATATCCTAGACATGGTC
1 ATGCCATGTCCCAGACATGGTC
98364515 AATTCCATGT
Statistics
Matches: 101, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
48 61 0.60
49 40 0.40
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.28
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
Found at i:98364522 original size:23 final size:23
Alignment explanation
Indices: 98364491--98364537 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
98364481 ATATCGATGC
98364491 CAATGCCATATCCTAGACATGGT
1 CAATGCCATATCCTAGACATGGT
* * *
98364514 CAATTCCATGTCCTAGATATGGT
1 CAATGCCATATCCTAGACATGGT
98364537 C
1 C
98364538 TTACATGGGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.30
Consensus pattern (23 bp):
CAATGCCATATCCTAGACATGGT
Found at i:98364614 original size:37 final size:37
Alignment explanation
Indices: 98364580--98364701 Score: 190
Period size: 37 Copynumber: 3.3 Consensus size: 37
98364570 TGTCCCAGAC
** * * *
98364580 ATGGTCTTACATGGGATCACAATGTCATAGCCCAGCT
1 ATGGTCTTACATGTCATTACGATGCCATAGCCCAGCT
98364617 ATGGTCTTACATGTCATTACGATGCCATAGCCCAGCT
1 ATGGTCTTACATGTCATTACGATGCCATAGCCCAGCT
98364654 ATGGTCTTACATGTCATTACGATGCCATAGCCCAGCT
1 ATGGTCTTACATGTCATTACGATGCCATAGCCCAGCT
*
98364691 ATGGTTTTACA
1 ATGGTCTTACA
98364702 CGTACTCACA
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 79 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (37 bp):
ATGGTCTTACATGTCATTACGATGCCATAGCCCAGCT
Found at i:98369821 original size:43 final size:43
Alignment explanation
Indices: 98369773--98369854 Score: 130
Period size: 43 Copynumber: 1.9 Consensus size: 43
98369763 AACATAATGG
98369773 CTTCAGTTTATTCT-ATGATGAACTATGTGTGCTAGTATACATT
1 CTTCAGTTTA-TCTGATGATGAACTATGTGTGCTAGTATACATT
* *
98369816 CTTCAGTTTATCTGATGATGCACTATGTGTGTTAGTATA
1 CTTCAGTTTATCTGATGATGAACTATGTGTGCTAGTATA
98369855 TTTCCTTCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
42 3 0.08
43 33 0.92
ACGTcount: A:0.24, C:0.13, G:0.18, T:0.44
Consensus pattern (43 bp):
CTTCAGTTTATCTGATGATGAACTATGTGTGCTAGTATACATT
Found at i:98369881 original size:43 final size:43
Alignment explanation
Indices: 98369773--98369882 Score: 114
Period size: 43 Copynumber: 2.6 Consensus size: 43
98369763 AACATAATGG
* * * *
98369773 CTTCAGTTTATTCTATGATGAACTATGTGTGCTAGTATACATT
1 CTTCAATTTATCCAATGATGCACTATGTGTGCTAGTATACATT
* ** * *
98369816 CTTCAGTTTATCTGATGATGCACTATGTGTGTTAGTATA-TTT
1 CTTCAATTTATCCAATGATGCACTATGTGTGCTAGTATACATT
*
98369858 CCTTCAATTTATCCAATGTTGCACT
1 -CTTCAATTTATCCAATGATGCACT
98369883 GTAGTGCCAT
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 2 0.04
43 54 0.96
ACGTcount: A:0.24, C:0.16, G:0.15, T:0.45
Consensus pattern (43 bp):
CTTCAATTTATCCAATGATGCACTATGTGTGCTAGTATACATT
Found at i:98371910 original size:48 final size:47
Alignment explanation
Indices: 98371836--98371969 Score: 171
Period size: 48 Copynumber: 2.8 Consensus size: 47
98371826 TGGTAGGATG
* * * *
98371836 CCAATGCCATATCCCGGATATGGTCTTACATGGAATCACGT-ATCGGTA
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGAAT--CGTAATCGATA
* *
98371884 CCAATGTCATGTCCCAGACATGGTCTTACATGGGATCGTAGATCGATA
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGAATCGTA-ATCGATA
*
98371932 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGAATCG
98371970 CACATAATCC
Statistics
Matches: 77, Mismatches: 7, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
46 3 0.04
48 74 0.96
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (47 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGAATCGTAATCGATA
Found at i:98375557 original size:27 final size:27
Alignment explanation
Indices: 98375497--98375548 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
98375487 TCTCCACAAG
**
98375497 TGGTGAAGTGTGAGTTGTCTCTACACA
1 TGGTGAAGTGTGAAATGTCTCTACACA
98375524 TGGTGAAGTGTGAAATGTCTCTACA
1 TGGTGAAGTGTGAAATGTCTCTACA
98375549 TGTTGTGAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.33
Consensus pattern (27 bp):
TGGTGAAGTGTGAAATGTCTCTACACA
Found at i:98384601 original size:34 final size:34
Alignment explanation
Indices: 98384562--98384629 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
98384552 TGTGTGTTTT
*
98384562 TTTAGGTGTTTATGAGTATTGATCGAATTATTGA
1 TTTAGGTATTTATGAGTATTGATCGAATTATTGA
98384596 TTTAGGTATTTATGAGTATTGATCGAATTATTGA
1 TTTAGGTATTTATGAGTATTGATCGAATTATTGA
98384630 CTTACTCCTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.28, C:0.03, G:0.22, T:0.47
Consensus pattern (34 bp):
TTTAGGTATTTATGAGTATTGATCGAATTATTGA
Found at i:98398581 original size:39 final size:39
Alignment explanation
Indices: 98398527--98398609 Score: 166
Period size: 39 Copynumber: 2.1 Consensus size: 39
98398517 CATAGATGAG
98398527 CTCATCATGCAATATTCTTTCGAGTTATTATAATTTCAT
1 CTCATCATGCAATATTCTTTCGAGTTATTATAATTTCAT
98398566 CTCATCATGCAATATTCTTTCGAGTTATTATAATTTCAT
1 CTCATCATGCAATATTCTTTCGAGTTATTATAATTTCAT
98398605 CTCAT
1 CTCAT
98398610 AATTCTCATA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.28, C:0.19, G:0.07, T:0.46
Consensus pattern (39 bp):
CTCATCATGCAATATTCTTTCGAGTTATTATAATTTCAT
Found at i:98412072 original size:110 final size:110
Alignment explanation
Indices: 98411879--98412097 Score: 420
Period size: 110 Copynumber: 2.0 Consensus size: 110
98411869 GGATGTACTC
*
98411879 GTAAAACTAGATAAATTTATATTCTCTGTTGATTTTGTTGTGCTTGACATGGATGAAGATGTTGA
1 GTAAAACTAGATAAATTTATATTCTCTATTGATTTTGTTGTGCTTGACATGGATGAAGATGTTGA
98411944 GGTGCCTTTAATTTTAGATCGTCCATTTTTAGCCACTGCTAGGGT
66 GGTGCCTTTAATTTTAGATCGTCCATTTTTAGCCACTGCTAGGGT
*
98411989 GTAAAATTAGATAAATTTATATTCTCTATTGATTTTGTTGTGCTTGACATGGATGAAGATGTTGA
1 GTAAAACTAGATAAATTTATATTCTCTATTGATTTTGTTGTGCTTGACATGGATGAAGATGTTGA
98412054 GGTGCCTTTAATTTTAGATCGTCCATTTTTAGCCACTGCTAGGG
66 GGTGCCTTTAATTTTAGATCGTCCATTTTTAGCCACTGCTAGGG
98412098 CTGTTATTGA
Statistics
Matches: 107, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
110 107 1.00
ACGTcount: A:0.25, C:0.12, G:0.21, T:0.41
Consensus pattern (110 bp):
GTAAAACTAGATAAATTTATATTCTCTATTGATTTTGTTGTGCTTGACATGGATGAAGATGTTGA
GGTGCCTTTAATTTTAGATCGTCCATTTTTAGCCACTGCTAGGGT
Found at i:98416457 original size:21 final size:21
Alignment explanation
Indices: 98416416--98416458 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
98416406 TTCCTACTTC
* *
98416416 TTTTTCTCCATTTTTCATTCT
1 TTTTTCTCCATCTTCCATTCT
*
98416437 TTTTTCTCCATCTTCCTTTCT
1 TTTTTCTCCATCTTCCATTCT
98416458 T
1 T
98416459 ATCTCCTTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.07, C:0.28, G:0.00, T:0.65
Consensus pattern (21 bp):
TTTTTCTCCATCTTCCATTCT
Found at i:98416482 original size:24 final size:23
Alignment explanation
Indices: 98416453--98416500 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 23
98416443 TCCATCTTCC
98416453 TTTCTTAT-CTCCTTCTCCCTCTCT
1 TTTCTTATCCT-CTTC-CCCTCTCT
*
98416477 TTTCTTTTCCTCTTCCCCTCTCT
1 TTTCTTATCCTCTTCCCCTCTCT
98416500 T
1 T
98416501 CCTCCTCCCC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 9 0.41
24 11 0.50
25 2 0.09
ACGTcount: A:0.02, C:0.42, G:0.00, T:0.56
Consensus pattern (23 bp):
TTTCTTATCCTCTTCCCCTCTCT
Found at i:98421727 original size:45 final size:44
Alignment explanation
Indices: 98421676--98421773 Score: 144
Period size: 45 Copynumber: 2.2 Consensus size: 44
98421666 GCCAAAACAT
98421676 GTGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCA
1 GTGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCA
* * * *
98421720 GATGTCACATATATCTTGAACTCAGACCATAACTTAATGAGTTCA
1 G-TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCA
98421765 G-GTCACATA
1 GTGTCACATA
98421774 GTTCCTAGTG
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
43 8 0.16
44 1 0.02
45 40 0.82
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (44 bp):
GTGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCA
Found at i:98422589 original size:100 final size:100
Alignment explanation
Indices: 98422472--98422671 Score: 400
Period size: 100 Copynumber: 2.0 Consensus size: 100
98422462 AAAATAAAAC
98422472 CATGTTACACAAGGGTCAAATTTCATACATGAACCCTAGCTCAAAATAATGGTAGAAATAGCTAG
1 CATGTTACACAAGGGTCAAATTTCATACATGAACCCTAGCTCAAAATAATGGTAGAAATAGCTAG
98422537 ATCGGTTGATGACAACTTCAAAAATGTAAAGAACA
66 ATCGGTTGATGACAACTTCAAAAATGTAAAGAACA
98422572 CATGTTACACAAGGGTCAAATTTCATACATGAACCCTAGCTCAAAATAATGGTAGAAATAGCTAG
1 CATGTTACACAAGGGTCAAATTTCATACATGAACCCTAGCTCAAAATAATGGTAGAAATAGCTAG
98422637 ATCGGTTGATGACAACTTCAAAAATGTAAAGAACA
66 ATCGGTTGATGACAACTTCAAAAATGTAAAGAACA
98422672 TTAAAAACGG
Statistics
Matches: 100, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
100 100 1.00
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.24
Consensus pattern (100 bp):
CATGTTACACAAGGGTCAAATTTCATACATGAACCCTAGCTCAAAATAATGGTAGAAATAGCTAG
ATCGGTTGATGACAACTTCAAAAATGTAAAGAACA
Found at i:98423470 original size:30 final size:30
Alignment explanation
Indices: 98423429--98423486 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
98423419 AGGAATGAAC
*
98423429 AGGGGTCGGTTTGAATCAAAAATAAAAAAT
1 AGGGATCGGTTTGAATCAAAAATAAAAAAT
98423459 AGGGATCGGTTTGAATCAAAAATAAAAA
1 AGGGATCGGTTTGAATCAAAAATAAAAA
98423487 GTTGGGAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.48, C:0.07, G:0.22, T:0.22
Consensus pattern (30 bp):
AGGGATCGGTTTGAATCAAAAATAAAAAAT
Found at i:98433080 original size:79 final size:82
Alignment explanation
Indices: 98432969--98433153 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
98432959 GCTACTCGTT
* *
98432969 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
98433032 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
98433049 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
98433112 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
98433129 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
98433154 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:98433153 original size:40 final size:40
Alignment explanation
Indices: 98432950--98433153 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
98432940 CGGAATTTAA
** *
98432950 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
98432990 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
98433030 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
98433069 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
98433109 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
98433149 CCGGA
1 CCGGA
98433154 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:98441058 original size:79 final size:82
Alignment explanation
Indices: 98440941--98441125 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
98440931 GCTACTCGTT
* *
98440941 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
98441004 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
98441021 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
98441084 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
98441101 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
98441126 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:98441125 original size:40 final size:40
Alignment explanation
Indices: 98440908--98441125 Score: 241
Period size: 40 Copynumber: 5.5 Consensus size: 40
98440898 AAATCACGTA
* * **
98440908 CCTTCGGAATTTAG-CCGGATATAGCT-ACTCGTTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
98440947 CCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
98440987 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
98441027 CCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* * * *
98441066 CCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-G
1 CCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCACAAATG
98441106 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAGCCCGGA
98441126 CATCATTCAA
Statistics
Matches: 152, Mismatches: 19, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.01
39 44 0.29
40 94 0.62
41 12 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:98442584 original size:152 final size:151
Alignment explanation
Indices: 98442337--98442639 Score: 581
Period size: 152 Copynumber: 2.0 Consensus size: 151
98442327 CCTTAGAATT
98442337 TTCGGCCAAAAGAAGATGAAAAAGGATGAACAAAATTTTTCTTTTCTTTTCTTTAACTCACGGCA
1 TTCGGCCAAAAGAAGATGAAAAAGGATGAACAAAATTTTTCTTTTCTTTTCTTTAACTCACGGCA
*
98442402 ATGGGGGGGGGAAACAACCACACACTTTTTTTTTTGTTTCCATTTCTTTATTATCCATACTCCTT
66 ATGGGGGGGGGAAACAACCACACAC-TTTTTTTTTGTTTCCATTTCTTTATTACCCATACTCCTT
98442467 ATTTTATTTTTCCTAACATACC
130 ATTTTATTTTTCCTAACATACC
98442489 TTCGGCCAAAAGAAGATGAAAAAGGATGAACAAAATTTTTCTTTTCTTTTCTTTAACTCACGGCA
1 TTCGGCCAAAAGAAGATGAAAAAGGATGAACAAAATTTTTCTTTTCTTTTCTTTAACTCACGGCA
98442554 ATGGGGGGGGG-AACAACCACACACTTTTTTTTTGTTTCCATTTCTTTATTACCCATACTCCTTA
66 ATGGGGGGGGGAAACAACCACACACTTTTTTTTTGTTTCCATTTCTTTATTACCCATACTCCTTA
98442618 TTTTATTTTTCCTAACATACC
131 TTTTATTTTTCCTAACATACC
98442639 T
1 T
98442640 CACTAACATA
Statistics
Matches: 150, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
150 61 0.41
151 13 0.09
152 76 0.51
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.39
Consensus pattern (151 bp):
TTCGGCCAAAAGAAGATGAAAAAGGATGAACAAAATTTTTCTTTTCTTTTCTTTAACTCACGGCA
ATGGGGGGGGGAAACAACCACACACTTTTTTTTTGTTTCCATTTCTTTATTACCCATACTCCTTA
TTTTATTTTTCCTAACATACC
Found at i:98444273 original size:12 final size:12
Alignment explanation
Indices: 98444256--98444281 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
98444246 CATTCCGAAG
98444256 TATATATATACA
1 TATATATATACA
98444268 TATATATATACA
1 TATATATATACA
98444280 TA
1 TA
98444282 AGTATGCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:98444793 original size:27 final size:27
Alignment explanation
Indices: 98444762--98444939 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
98444752 TAAATTGTAC
98444762 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
98444789 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
98444815 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
98444843 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
98444871 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
98444898 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
98444925 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
98444940 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:98444876 original size:82 final size:81
Alignment explanation
Indices: 98444763--98444918 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
98444753 AAATTGTACA
* *
98444763 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
98444827 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
98444844 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
98444909 TGCGAGTTGA
65 TGCGAATTGA
98444919 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:98444930 original size:82 final size:81
Alignment explanation
Indices: 98444759--98444939 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
98444749 GATTAAATTG
* *
98444759 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
98444824 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
98444840 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
98444904 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
98444922 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
98444940 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:98458213 original size:12 final size:13
Alignment explanation
Indices: 98458196--98458242 Score: 62
Period size: 12 Copynumber: 3.8 Consensus size: 13
98458186 AACACTCCAT
98458196 AAATATTTAT-AA
1 AAATATTTATAAA
**
98458208 AAATATTTATGGA
1 AAATATTTATAAA
98458221 AAATATTT-TAAA
1 AAATATTTATAAA
98458233 AAATATTTAT
1 AAATATTTAT
98458243 GGCTCGGTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
12 20 0.67
13 10 0.33
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (13 bp):
AAATATTTATAAA
Found at i:98458224 original size:25 final size:25
Alignment explanation
Indices: 98458196--98458244 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
98458186 AACACTCCAT
98458196 AAATA-TTTATAAAAATATTTATGGA
1 AAATATTTTA-AAAAATATTTATGGA
98458221 AAATATTTTAAAAAATATTTATGG
1 AAATATTTTAAAAAATATTTATGG
98458245 CTCGGTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 19 0.83
26 4 0.17
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.41
Consensus pattern (25 bp):
AAATATTTTAAAAAATATTTATGGA
Found at i:98459601 original size:21 final size:22
Alignment explanation
Indices: 98459561--98459604 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
98459551 ATCGTTTCTA
*
98459561 TTTACAAAAAACCTTAGTTTTT
1 TTTACAAAAAACCATAGTTTTT
*
98459583 TTTAGAAAAAACCAT-GTTTTT
1 TTTACAAAAAACCATAGTTTTT
98459604 T
1 T
98459605 GGAGTTGCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.36, C:0.11, G:0.07, T:0.45
Consensus pattern (22 bp):
TTTACAAAAAACCATAGTTTTT
Found at i:98463168 original size:16 final size:16
Alignment explanation
Indices: 98463147--98463178 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
98463137 TGATTGAAAG
*
98463147 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
98463163 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
98463179 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:98465915 original size:32 final size:32
Alignment explanation
Indices: 98465869--98465943 Score: 105
Period size: 32 Copynumber: 2.3 Consensus size: 32
98465859 ACAGTCACCT
* *
98465869 CCAATGGTCATTTAAAAATTTGACAATTGGGG
1 CCAAAGGTCATTTAAAAATTTGACAATTAGGG
**
98465901 CCAAAGGTCATTTAAAAATTTGACTGTTAGGG
1 CCAAAGGTCATTTAAAAATTTGACAATTAGGG
*
98465933 CCAACGGTCAT
1 CCAAAGGTCAT
98465944 GAAAAAAATT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.29
Consensus pattern (32 bp):
CCAAAGGTCATTTAAAAATTTGACAATTAGGG
Found at i:98465950 original size:32 final size:32
Alignment explanation
Indices: 98465882--98465950 Score: 84
Period size: 32 Copynumber: 2.2 Consensus size: 32
98465872 ATGGTCATTT
* **
98465882 AAAAATTTGACAATTGGGGCCAAAGGTCATTT
1 AAAAATTTGACAATTAGGGCCAAAGGTCATGA
** *
98465914 AAAAATTTGACTGTTAGGGCCAACGGTCATGA
1 AAAAATTTGACAATTAGGGCCAAAGGTCATGA
98465946 AAAAA
1 AAAAA
98465951 ATTATAAACC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.41, C:0.13, G:0.22, T:0.25
Consensus pattern (32 bp):
AAAAATTTGACAATTAGGGCCAAAGGTCATGA
Found at i:98466231 original size:19 final size:20
Alignment explanation
Indices: 98466198--98466236 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
98466188 GTTAATTTCA
*
98466198 ATTTTTTAATATTATTTAAT
1 ATTTTTTAATATTATGTAAT
*
98466218 ATTTTTTCAT-TTATGTAAT
1 ATTTTTTAATATTATGTAAT
98466237 TTAAATTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (20 bp):
ATTTTTTAATATTATGTAAT
Found at i:98466257 original size:10 final size:10
Alignment explanation
Indices: 98466242--98466267 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
98466232 GTAATTTAAA
98466242 TTTATATTTT
1 TTTATATTTT
98466252 TTTATATTTT
1 TTTATATTTT
98466262 TTTATA
1 TTTATA
98466268 ACAGTCGGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (10 bp):
TTTATATTTT
Found at i:98475983 original size:37 final size:37
Alignment explanation
Indices: 98475942--98476793 Score: 1704
Period size: 37 Copynumber: 23.0 Consensus size: 37
98475932 TGTCGAAAAG
98475942 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
1 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
98475979 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
1 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
98476016 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
1 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
98476053 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
1 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
98476090 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
1 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
98476127 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
1 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
98476164 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
1 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
98476201 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
1 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
98476238 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
1 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
98476275 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
1 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
98476312 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
1 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
98476349 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
1 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
98476386 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
1 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
98476423 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
1 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
98476460 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
1 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
98476497 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
1 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
98476534 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
1 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
98476571 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
1 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
98476608 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
1 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
98476645 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
1 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
98476682 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
1 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
98476719 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
1 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
98476756 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
1 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
98476793 A
1 A
98476794 ATATGAACAT
Statistics
Matches: 815, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 815 1.00
ACGTcount: A:0.49, C:0.08, G:0.05, T:0.38
Consensus pattern (37 bp):
ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
Found at i:98485252 original size:24 final size:24
Alignment explanation
Indices: 98485225--98485283 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 24
98485215 AAATGAATCA
**
98485225 AATTATGTATGTTCAAATGGAGTG
1 AATTATGTATGTTCAAATCAAGTG
* * *
98485249 AATTATCATATGTTTAATTCAAGTG
1 AATTAT-GTATGTTCAAATCAAGTG
98485274 AATTATGTAT
1 AATTATGTAT
98485284 AAATACACTA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
24 9 0.32
25 19 0.68
ACGTcount: A:0.36, C:0.05, G:0.17, T:0.42
Consensus pattern (24 bp):
AATTATGTATGTTCAAATCAAGTG
Found at i:98488394 original size:59 final size:58
Alignment explanation
Indices: 98488315--98488432 Score: 173
Period size: 59 Copynumber: 2.0 Consensus size: 58
98488305 TTATTCTAAA
* * * * *
98488315 GTTTTCTTGTAGGAATGTGACTGAGATCATTTCCCTGCCACTAACACATTTGTTTGTTT
1 GTTTTCTGGCAGGAACGTGACTGAGATCATTTCCCCGCCAAT-ACACATTTGTTTGTTT
*
98488374 GTTTTCTGGCAGGAACGTGACTTAGATCATTTCCCCGCCAATACACATTTGTTTGTTT
1 GTTTTCTGGCAGGAACGTGACTGAGATCATTTCCCCGCCAATACACATTTGTTTGTTT
98488432 G
1 G
98488433 CGTATGTTAG
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
58 17 0.32
59 36 0.68
ACGTcount: A:0.20, C:0.20, G:0.19, T:0.40
Consensus pattern (58 bp):
GTTTTCTGGCAGGAACGTGACTGAGATCATTTCCCCGCCAATACACATTTGTTTGTTT
Found at i:98489940 original size:26 final size:25
Alignment explanation
Indices: 98489909--98489999 Score: 100
Period size: 26 Copynumber: 3.6 Consensus size: 25
98489899 CTTATTAGCG
98489909 TCCCGA-TATATGGCTCTTCGTGAGCT
1 TCCCGATTA-ATGGCTCTTC-TGAGCT
*
98489935 TCCCGATTAAAGGCTCTTTCTGAGCT
1 TCCCGATTAATGGCTC-TTCTGAGCT
*
98489961 TCCTGATTAATGGCTC-TCTAGAGCT
1 TCCCGATTAATGGCTCTTCT-GAGCT
98489986 TCCCGA-T-ATGGCTC
1 TCCCGATTAATGGCTC
98490000 GCTTGAACTT
Statistics
Matches: 58, Mismatches: 4, Indels: 9
0.82 0.06 0.13
Matches are distributed among these distances:
23 7 0.12
24 4 0.07
25 10 0.17
26 32 0.55
27 5 0.09
ACGTcount: A:0.18, C:0.27, G:0.21, T:0.34
Consensus pattern (25 bp):
TCCCGATTAATGGCTCTTCTGAGCT
Found at i:98490120 original size:25 final size:26
Alignment explanation
Indices: 98490051--98490122 Score: 67
Period size: 25 Copynumber: 2.8 Consensus size: 26
98490041 TATGGCTCTT
* **
98490051 ATGAGCTTCCTGTTATATAGC-ATGG
1 ATGAGCTTCCTGTTATATGGCTATAC
* ** *
98490076 ATAAGCTTCCCATTACATGGCTA-AC
1 ATGAGCTTCCTGTTATATGGCTATAC
98490101 ATGAGCTTCCTGTTATATGGCT
1 ATGAGCTTCCTGTTATATGGCT
98490123 CGAGAGAGAG
Statistics
Matches: 35, Mismatches: 11, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
25 34 0.97
26 1 0.03
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (26 bp):
ATGAGCTTCCTGTTATATGGCTATAC
Found at i:98495093 original size:28 final size:28
Alignment explanation
Indices: 98495053--98495109 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
98495043 TATCACAGCC
98495053 AGTTACAATATCAGAATGGAAGTGGGAA
1 AGTTACAATATCAGAATGGAAGTGGGAA
*
98495081 AGTTACAATATCAGAATGTAAGTGGGAA
1 AGTTACAATATCAGAATGGAAGTGGGAA
98495109 A
1 A
98495110 TAGTTACTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.44, C:0.07, G:0.26, T:0.23
Consensus pattern (28 bp):
AGTTACAATATCAGAATGGAAGTGGGAA
Found at i:98497458 original size:26 final size:26
Alignment explanation
Indices: 98497422--98497475 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
98497412 CTCTTGAGCT
98497422 TCCCGTTAATAGCTCTTCGAAGAATC
1 TCCCGTTAATAGCTCTTCGAAGAATC
*
98497448 TCCCGTTAATAGCTCTTCGAAGCATC
1 TCCCGTTAATAGCTCTTCGAAGAATC
98497474 TC
1 TC
98497476 AATCGGTTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.31
Consensus pattern (26 bp):
TCCCGTTAATAGCTCTTCGAAGAATC
Found at i:98511222 original size:6 final size:6
Alignment explanation
Indices: 98511217--98511250 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
98511207 ACTAAAAAAG
98511217 GGAAA- GGAAAT GGAAAT GGAAAT GGAAAT GGAAA
1 GGAAAT GGAAAT GGAAAT GGAAAT GGAAAT GGAAA
98511251 AAAACTAACA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 5 0.18
6 23 0.82
ACGTcount: A:0.53, C:0.00, G:0.35, T:0.12
Consensus pattern (6 bp):
GGAAAT
Found at i:98512553 original size:13 final size:13
Alignment explanation
Indices: 98512535--98512559 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
98512525 GGTTTGTTTA
98512535 TTAAACTAATTAT
1 TTAAACTAATTAT
98512548 TTAAACTAATTA
1 TTAAACTAATTA
98512560 ACTGATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:98515485 original size:24 final size:23
Alignment explanation
Indices: 98515440--98515522 Score: 73
Period size: 24 Copynumber: 3.6 Consensus size: 23
98515430 TATGTCTTTC
* *
98515440 AAAATAAAATAATAAAATTGAAATG
1 AAAAT-AAA-AATAAAAGTGAAATA
98515465 AAAATAAAAATCAAAAGTGAAATA
1 AAAATAAAAAT-AAAAGTGAAATA
*
98515489 AAAAT-AAAAT-AAAG-AAAATA
1 AAAATAAAAATAAAAGTGAAATA
* *
98515509 AAAATTAGAATAAA
1 AAAATAAAAATAAA
98515523 TAAAAAAATA
Statistics
Matches: 51, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
20 10 0.20
21 8 0.16
22 2 0.04
23 8 0.16
24 18 0.35
25 5 0.10
ACGTcount: A:0.72, C:0.01, G:0.07, T:0.19
Consensus pattern (23 bp):
AAAATAAAAATAAAAGTGAAATA
Found at i:98515512 original size:21 final size:20
Alignment explanation
Indices: 98515440--98515527 Score: 63
Period size: 18 Copynumber: 4.2 Consensus size: 20
98515430 TATGTCTTTC
98515440 AAAATAAAATAATAAAATTGAAATG
1 AAAAT-AAA-AATAAAA-T-AAA-G
* **
98515465 AAAATAAAAATCAAA-AGTG
1 AAAATAAAAATAAAATAAAG
98515484 -AAATAAAAATAAAATAAAG
1 AAAATAAAAATAAAATAAAG
* *
98515503 AAAATAAAAATTAGAATAAAT
1 AAAATAAAAA-TAAAATAAAG
98515524 AAAA
1 AAAA
98515528 AAATAGGAGG
Statistics
Matches: 52, Mismatches: 8, Indels: 10
0.74 0.11 0.14
Matches are distributed among these distances:
18 13 0.25
19 3 0.06
20 10 0.19
21 12 0.23
23 6 0.12
24 3 0.06
25 5 0.10
ACGTcount: A:0.73, C:0.01, G:0.07, T:0.19
Consensus pattern (20 bp):
AAAATAAAAATAAAATAAAG
Found at i:98515530 original size:38 final size:43
Alignment explanation
Indices: 98515441--98515532 Score: 108
Period size: 38 Copynumber: 2.3 Consensus size: 43
98515431 ATGTCTTTCA
*
98515441 AAATAAAATAATAAAATTGAAATGAAAATAAAAATCAAAAGTG
1 AAATAAAAAAATAAAATTGAAATGAAAATAAAAATCAAAAGTG
* *
98515484 AAAT--AAAAATAAAA-T-AAA-GAAAATAAAAATTAGAA-T-
1 AAATAAAAAAATAAAATTGAAATGAAAATAAAAATCAAAAGTG
98515520 AAATAAAAAAATA
1 AAATAAAAAAATA
98515533 GGAGGATTCA
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
36 4 0.09
37 1 0.02
38 22 0.50
39 3 0.07
40 1 0.02
41 9 0.20
43 4 0.09
ACGTcount: A:0.73, C:0.01, G:0.07, T:0.20
Consensus pattern (43 bp):
AAATAAAAAAATAAAATTGAAATGAAAATAAAAATCAAAAGTG
Found at i:98519822 original size:9 final size:9
Alignment explanation
Indices: 98519808--98519984 Score: 210
Period size: 9 Copynumber: 19.6 Consensus size: 9
98519798 TGATATTTAT
*
98519808 TTATGTCAA
1 TTATGTAAA
98519817 TTATGTAAA
1 TTATGTAAA
* * *
98519826 ATAGGTAAG
1 TTATGTAAA
*
98519835 TTATGAAAA
1 TTATGTAAA
98519844 TTAATGTAAA
1 TT-ATGTAAA
*
98519854 TCATGTAAA
1 TTATGTAAA
*
98519863 TTATGTAAG
1 TTATGTAAA
*
98519872 TTATGAAAA
1 TTATGTAAA
98519881 TTATGTAAA
1 TTATGTAAA
*
98519890 TTATGTACA
1 TTATGTAAA
98519899 TTATGTAAA
1 TTATGTAAA
*
98519908 TTATGTAAG
1 TTATGTAAA
98519917 TTATGTAAA
1 TTATGTAAA
98519926 TTATGTAAA
1 TTATGTAAA
*
98519935 TTATGTAAG
1 TTATGTAAA
98519944 TTATGTAAA
1 TTATGTAAA
*
98519953 TTATGTAAG
1 TTATGTAAA
*
98519962 TTATGTAAG
1 TTATGTAAA
* *
98519971 TTATATAAG
1 TTATGTAAA
98519980 TTATG
1 TTATG
98519985 ACATTTATGA
Statistics
Matches: 143, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
9 136 0.95
10 7 0.05
ACGTcount: A:0.41, C:0.02, G:0.15, T:0.42
Consensus pattern (9 bp):
TTATGTAAA
Found at i:98519992 original size:18 final size:18
Alignment explanation
Indices: 98519808--98520136 Score: 222
Period size: 18 Copynumber: 17.9 Consensus size: 18
98519798 TGATATTTAT
98519808 TTATGTCAA-TTATGTAAA
1 TTATGT-AAGTTATGTAAA
* * *
98519826 ATAGGTAAGTTATGAAAA
1 TTATGTAAGTTATGTAAA
* *
98519844 TTAATGTAAATCATGTAAA
1 TT-ATGTAAGTTATGTAAA
*
98519863 TTATGTAAGTTATGAAAA
1 TTATGTAAGTTATGTAAA
* *
98519881 TTATGTAAATTATGTACA
1 TTATGTAAGTTATGTAAA
* *
98519899 TTATGTAAATTATGTAAG
1 TTATGTAAGTTATGTAAA
*
98519917 TTATGTAAATTATGTAAA
1 TTATGTAAGTTATGTAAA
98519935 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATGTAAA
*
98519953 TTATGTAAGTTATGTAAG
1 TTATGTAAGTTATGTAAA
* *
98519971 TTATATAAGTTATG-ACAT
1 TTATGTAAGTTATGTA-AA
* * * *
98519989 TTATGATATGATATAT-AT
1 TTATG-TAAGTTATGTAAA
*
98520007 TTATGT-A-TTATGTAAG
1 TTATGTAAGTTATGTAAA
*
98520023 TTATGTAAGTTTTGATATGATA
1 TTATGTAAGTTATG-TA--A-A
* *
98520045 TATATTTATAAGTTATGTAAG
1 T-TA--TGTAAGTTATGTAAA
* * *
98520066 TTATGTATGTTATGTGAG
1 TTATGTAAGTTATGTAAA
* *
98520084 GTATGTAAGTTATG-ATA
1 TTATGTAAGTTATGTAAA
* * *
98520101 TGATATACATTTATGTAAGA
1 TTATGTA-AGTTATGTAA-A
98520121 -TATGTAAGTTATGTAA
1 TTATGTAAGTTATGTAA
98520137 TTTTAAAGAA
Statistics
Matches: 243, Mismatches: 50, Indels: 36
0.74 0.15 0.11
Matches are distributed among these distances:
15 4 0.02
16 7 0.03
17 9 0.04
18 176 0.72
19 27 0.11
20 3 0.01
21 2 0.01
22 2 0.01
23 2 0.01
24 2 0.01
25 9 0.04
ACGTcount: A:0.38, C:0.02, G:0.16, T:0.44
Consensus pattern (18 bp):
TTATGTAAGTTATGTAAA
Found at i:98519992 original size:27 final size:27
Alignment explanation
Indices: 98519809--98520136 Score: 206
Period size: 27 Copynumber: 12.3 Consensus size: 27
98519799 GATATTTATT
* ** *
98519809 TATGTCAATTATGTAAAATAGGTAAGT
1 TATGTAAATTATGTAAGTTATGTAAGT
* * * *
98519836 TATGAAAATTAATGTAAATCATGTAAAT
1 TATGTAAATT-ATGTAAGTTATGTAAGT
* * * *
98519864 TATGTAAGTTATGAAAATTATGTAAAT
1 TATGTAAATTATGTAAGTTATGTAAGT
* *
98519891 TATGTACATTATGTAAATTATGTAAGT
1 TATGTAAATTATGTAAGTTATGTAAGT
*
98519918 TATGTAAATTATGTAAATTATGTAAGT
1 TATGTAAATTATGTAAGTTATGTAAGT
98519945 TATGTAAATTATGTAAGTTATGTAAGT
1 TATGTAAATTATGTAAGTTATGTAAGT
* * * * *
98519972 TATATAAGTTATG-ACATTTATGATATGA
1 TATGTAAATTATGTA-AGTTATG-TAAGT
* *
98520000 TATAT-ATTTATGT-A-TTATGTAAGT
1 TATGTAAATTATGTAAGTTATGTAAGT
* * * * *
98520024 TATGTAAGTTTTGATATGATATAT-A-T
1 TATGTAAATTATG-TAAGTTATGTAAGT
* * *
98520050 T-TATAAGTTATGTAAGTTATGTATGT
1 TATGTAAATTATGTAAGTTATGTAAGT
* **
98520076 TATGTGAGGTATGTAAGTTATG-ATA-T
1 TATGTAAATTATGTAAGTTATGTA-AGT
* * * *
98520102 GATATACATTTATGTAAGATATGTAAGT
1 TATGTA-AATTATGTAAGTTATGTAAGT
98520130 TATGTAA
1 TATGTAA
98520137 TTTTAAAGAA
Statistics
Matches: 238, Mismatches: 48, Indels: 30
0.75 0.15 0.09
Matches are distributed among these distances:
24 14 0.06
25 19 0.08
26 12 0.05
27 154 0.65
28 39 0.16
ACGTcount: A:0.38, C:0.02, G:0.16, T:0.44
Consensus pattern (27 bp):
TATGTAAATTATGTAAGTTATGTAAGT
Found at i:98520028 original size:9 final size:9
Alignment explanation
Indices: 98520014--98520136 Score: 76
Period size: 9 Copynumber: 13.9 Consensus size: 9
98520004 TATTTATGTA
98520014 TTATGTAAG
1 TTATGTAAG
98520023 TTATGTAAG
1 TTATGTAAG
* *
98520032 TTTTGATATG
1 TTATG-TAAG
* *
98520042 ATATAT-A-
1 TTATGTAAG
*
98520049 TT-TATAAG
1 TTATGTAAG
98520057 TTATGTAAG
1 TTATGTAAG
*
98520066 TTATGTATG
1 TTATGTAAG
*
98520075 TTATGTGAG
1 TTATGTAAG
*
98520084 GTATGTAAG
1 TTATGTAAG
98520093 TTATG-ATA-
1 TTATGTA-AG
* * *
98520101 TGATATACAT
1 TTATGTA-AG
98520111 TTATGTAAG
1 TTATGTAAG
*
98520120 ATATGTAAG
1 TTATGTAAG
98520129 TTATGTAA
1 TTATGTAA
98520137 TTTTAAAGAA
Statistics
Matches: 85, Mismatches: 22, Indels: 14
0.70 0.18 0.12
Matches are distributed among these distances:
6 3 0.04
7 2 0.02
8 6 0.07
9 64 0.75
10 10 0.12
ACGTcount: A:0.34, C:0.01, G:0.20, T:0.46
Consensus pattern (9 bp):
TTATGTAAG
Found at i:98520039 original size:43 final size:44
Alignment explanation
Indices: 98519917--98520072 Score: 151
Period size: 43 Copynumber: 3.5 Consensus size: 44
98519907 ATTATGTAAG
* * * * * * *
98519917 TTATGTAAATTATGTAAATTATGTAAGTTATGTAAATTATGTA-AG
1 TTATGT-AGTTATGTAAGTTATGTAAGTTTTG-ATATGATATATAT
*
98519962 TTATGTAAGTTATATAAGTTATG-ACA-TTTATGATATGATATATAT
1 TTATGT-AGTTATGTAAGTTATGTA-AGTTT-TGATATGATATATAT
98520007 TTATGTA-TTATGTAAGTTATGTAAGTTTTGATATGATATATAT
1 TTATGTAGTTATGTAAGTTATGTAAGTTTTGATATGATATATAT
*
98520050 TTAT-AAGTTATGTAAGTTATGTA
1 TTATGTAGTTATGTAAGTTATGTA
98520073 TGTTATGTGA
Statistics
Matches: 95, Mismatches: 10, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
42 1 0.01
43 49 0.52
44 15 0.16
45 30 0.32
ACGTcount: A:0.37, C:0.01, G:0.15, T:0.47
Consensus pattern (44 bp):
TTATGTAGTTATGTAAGTTATGTAAGTTTTGATATGATATATAT
Found at i:98520052 original size:61 final size:61
Alignment explanation
Indices: 98519940--98520135 Score: 204
Period size: 61 Copynumber: 3.2 Consensus size: 61
98519930 GTAAATTATG
* *
98519940 TAAGTTATGTAAATTATGTAAGTTATGTAAGTTAT-ATAAGTTATGACATTTATGATATGATATA
1 TAAGTTATGT--ATTATGTAAGTTATGTAAGTTATGATATGATAT-ACATTTATGATA-GATATA
* * * * *
98520004 T-ATTTATGTATTATGTAAGTTATGTAAGTTTTGATATGATATATATTTAT-A-AGTTATG
1 TAAGTTATGTATTATGTAAGTTATGTAAGTTATGATATGATATACATTTATGATAGATATA
* * *
98520062 TAAGTTATGTATGTTATGTGAGGTATGTAAGTTATGATATGATATACATTTATG-TAAGATATG
1 TAAGTTATGTA--TTATGTAAGTTATGTAAGTTATGATATGATATACATTTATGAT-AGATATA
98520125 TAAGTTATGTA
1 TAAGTTATGTA
98520136 ATTTTAAAGA
Statistics
Matches: 112, Mismatches: 13, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
58 5 0.04
59 9 0.08
60 1 0.01
61 65 0.58
62 7 0.06
63 24 0.21
64 1 0.01
ACGTcount: A:0.35, C:0.01, G:0.18, T:0.46
Consensus pattern (61 bp):
TAAGTTATGTATTATGTAAGTTATGTAAGTTATGATATGATATACATTTATGATAGATATA
Found at i:98523950 original size:48 final size:48
Alignment explanation
Indices: 98523812--98523950 Score: 181
Period size: 48 Copynumber: 2.9 Consensus size: 48
98523802 ACGTTTGGGT
* * * *
98523812 GATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGACATCAGCCAC
1 GATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
* * * * *
98523860 GTTATGAGAGCCAATGTAAGACCAT-ACTTGGGACATGGCATCGGCCTC
1 GATATGTGAGCCAGTGTAAGACCATGTC-TGGGACATGGCATCGGCCAC
98523908 GATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
98523951 ATAATTTACC
Statistics
Matches: 76, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
47 1 0.01
48 74 0.97
49 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.23
Consensus pattern (48 bp):
GATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
Found at i:98526133 original size:21 final size:20
Alignment explanation
Indices: 98526060--98526134 Score: 53
Period size: 21 Copynumber: 3.5 Consensus size: 20
98526050 ACTAATTAAT
98526060 CTAAACCTTAAACCCCTAACC
1 CTAAACCTT-AACCCCTAACC
* ** * *
98526081 TTATCCCTTAAACCCTAAATCT
1 CTAAACCTTAACCCCT-AA-CC
98526103 CT-AACACTTAACCCCTAACCC
1 CTAAAC-CTTAACCCCTAA-CC
98526124 CTAAACCTTAA
1 CTAAACCTTAA
98526135 ATCCCAACTC
Statistics
Matches: 39, Mismatches: 11, Indels: 8
0.67 0.19 0.14
Matches are distributed among these distances:
20 6 0.15
21 19 0.49
22 14 0.36
ACGTcount: A:0.36, C:0.39, G:0.00, T:0.25
Consensus pattern (20 bp):
CTAAACCTTAACCCCTAACC
Found at i:98526184 original size:15 final size:14
Alignment explanation
Indices: 98526146--98526190 Score: 63
Period size: 14 Copynumber: 3.1 Consensus size: 14
98526136 TCCCAACTCT
*
98526146 TAAACCATAAACCA
1 TAAACCATAATCCA
*
98526160 TAAACCATAATCCC
1 TAAACCATAATCCA
98526174 TAAACCCATAATCCA
1 TAAA-CCATAATCCA
98526189 TA
1 TA
98526191 TACCTTAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
14 16 0.59
15 11 0.41
ACGTcount: A:0.49, C:0.31, G:0.00, T:0.20
Consensus pattern (14 bp):
TAAACCATAATCCA
Found at i:98527492 original size:30 final size:30
Alignment explanation
Indices: 98527456--98527517 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
98527446 ACTTATTTTA
* *
98527456 TTGTTAATTTTCTTATTATTTTAAAGGCAT
1 TTGTTAATTTTCTTATTACTTTAAAGCCAT
* *
98527486 TTGTTAATTTTTTTATTACTTTAGAGCCAT
1 TTGTTAATTTTCTTATTACTTTAAAGCCAT
98527516 TT
1 TT
98527518 ACTTGTTAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.24, C:0.08, G:0.10, T:0.58
Consensus pattern (30 bp):
TTGTTAATTTTCTTATTACTTTAAAGCCAT
Found at i:98541991 original size:21 final size:21
Alignment explanation
Indices: 98541961--98542000 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
98541951 AATAAGTAGC
*
98541961 CTTAAAATGGTTGATTGATAA
1 CTTAAAATGGTTGAATGATAA
*
98541982 CTTAATATGGTTGAATGAT
1 CTTAAAATGGTTGAATGAT
98542001 GAAAGATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.05, G:0.20, T:0.40
Consensus pattern (21 bp):
CTTAAAATGGTTGAATGATAA
Found at i:98554095 original size:51 final size:50
Alignment explanation
Indices: 98553955--98554096 Score: 162
Period size: 51 Copynumber: 2.8 Consensus size: 50
98553945 CGGATGCCCG
* * *
98553955 GTGGCCTGCACATAGTACCACCCTTGT-AGTCAAAGCTACCTTCTT-CACAAA
1 GTGGCCTGCACATAGTA-CACACTTGTGA-TCAAAGCTATCTT-TTACACATA
* *
98554006 GTGGCCTTCACATAGTACTACACTTGTGACCAAAGCTATCTTTTACACATA
1 GTGGCCTGCACATAGTAC-ACACTTGTGATCAAAGCTATCTTTTACACATA
* *
98554057 GTGGCCTGCACTTAGTAGCACACATGTGATCAAAGCTATC
1 GTGGCCTGCACATAGTA-CACACTTGTGATCAAAGCTATC
98554097 GGGTACGCAT
Statistics
Matches: 78, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
50 3 0.04
51 73 0.94
52 2 0.03
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.27
Consensus pattern (50 bp):
GTGGCCTGCACATAGTACACACTTGTGATCAAAGCTATCTTTTACACATA
Found at i:98554108 original size:51 final size:51
Alignment explanation
Indices: 98554000--98554131 Score: 149
Period size: 51 Copynumber: 2.6 Consensus size: 51
98553990 CTACCTTCTT
* * * * ***
98554000 CACAAAGTGGCCTTCACATAGTACTACACTTGTGACCAAAGCTATCTTTTA
1 CACATAGTGGCCTGCACTTAGTACTACACATGTGACCAAAGCTATCGGGTA
*
98554051 CACATAGTGGCCTGCACTTAGTAGC-ACACATGTGATCAAAGCTATCGGGTA
1 CACATAGTGGCCTGCACTTAGTA-CTACACATGTGACCAAAGCTATCGGGTA
* * *
98554102 CGCATAGTAGCATGCACTTAGTACTACACA
1 CACATAGTGGCCTGCACTTAGTACTACACA
98554132 CATAACCTAA
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
50 1 0.01
51 66 0.97
52 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (51 bp):
CACATAGTGGCCTGCACTTAGTACTACACATGTGACCAAAGCTATCGGGTA
Found at i:98556731 original size:28 final size:28
Alignment explanation
Indices: 98556691--98556764 Score: 78
Period size: 27 Copynumber: 2.6 Consensus size: 28
98556681 GCTCTCTAAT
* *
98556691 CCTTTTGGTGAACCCCCTACTCACCAAG
1 CCTTTTGGCGAACCCCCAACTCACCAAG
* **
98556719 CCTTTTGGCGAA-CACCAACTCGTCAAG
1 CCTTTTGGCGAACCCCCAACTCACCAAG
*
98556746 CCTTCTGGCGAACTCCCCA
1 CCTTTTGGCGAAC-CCCCA
98556765 GGCCTAAAAC
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
27 22 0.59
28 11 0.30
29 4 0.11
ACGTcount: A:0.22, C:0.39, G:0.16, T:0.23
Consensus pattern (28 bp):
CCTTTTGGCGAACCCCCAACTCACCAAG
Found at i:98560063 original size:16 final size:16
Alignment explanation
Indices: 98560042--98560072 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
98560032 ATAAATTTGA
98560042 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
98560058 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
98560073 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:98567266 original size:55 final size:54
Alignment explanation
Indices: 98567177--98567432 Score: 255
Period size: 55 Copynumber: 4.8 Consensus size: 54
98567167 CATTAGGGTT
* * **
98567177 CAAGGATATCATGTAAGACCATGCCAAGGTATGGCAATTGGTAAGGTTTCTAAGG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAA-GTTTCTAAGG
* * * *
98567232 CAAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTT--TCTAAGG
* * *
98567287 CAAAGG-TCCCATGTAAGACCATG-CTAAGGCATGGC-ATTGGTGAG-TTCATAAGG
1 C-AAGGATACCATGTAAGACCATGTC-AAGACATGGCAATTGGTAAGTTTC-TAAGG
98567340 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA--
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGG
* * *
98567390 -AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAG
98567433 GTACCCATGT
Statistics
Matches: 173, Mismatches: 19, Indels: 24
0.80 0.09 0.11
Matches are distributed among these distances:
49 40 0.23
52 7 0.04
53 40 0.23
54 14 0.08
55 68 0.39
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGG
Found at i:98567384 original size:108 final size:110
Alignment explanation
Indices: 98567186--98567385 Score: 307
Period size: 108 Copynumber: 1.8 Consensus size: 110
98567176 TCAAGGATAT
* *
98567186 CATGTAAGACCATGCCAAGGTATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGAC
1 CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGAC
*
98567251 CATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCC
66 CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCC
* * *
98567296 CATGTAAGACCATGCTAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAGA
1 CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGA
*
98567358 CCATGTCAAGACATGGCAATGGTAAGTT
65 CCATGTCAAGACATGGCAATGATAAGTT
98567386 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.59
109 7 0.09
110 24 0.29
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (110 bp):
CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGAC
CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCC
Found at i:98567650 original size:16 final size:16
Alignment explanation
Indices: 98567629--98567659 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
98567619 ATAAATTTGA
98567629 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
98567645 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
98567660 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:98569095 original size:18 final size:18
Alignment explanation
Indices: 98569072--98569120 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
98569062 CTTGGCCCAT
*
98569072 TGCAGTAATAGTAAACAG
1 TGCAGTAACAGTAAACAG
*
98569090 TGCAGTAACGGTAAACAG
1 TGCAGTAACAGTAAACAG
*
98569108 TGCAGAAACAGTA
1 TGCAGTAACAGTA
98569121 TACGGTATGC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.43, C:0.14, G:0.24, T:0.18
Consensus pattern (18 bp):
TGCAGTAACAGTAAACAG
Found at i:98569487 original size:27 final size:27
Alignment explanation
Indices: 98569452--98569675 Score: 249
Period size: 27 Copynumber: 8.4 Consensus size: 27
98569442 AAACATACAT
* *
98569452 CACAT-AGGGAAAAACAGTCA-TCTTAC
1 CACATAAGGGCAAAATAGTCATTC-TAC
* * *
98569478 CATATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTCTAC
* * *
98569505 CATATAAGGGAAAAATAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTCTAC
*
98569532 CACATAAGGGTAAAATAGTCATTCTAC
1 CACATAAGGGCAAAATAGTCATTCTAC
* *
98569559 CACATCAGGGCAAAACAGTCATTCTAC
1 CACATAAGGGCAAAATAGTCATTCTAC
98569586 CACATAAGGGCAAAATAGTCATTCTAC
1 CACATAAGGGCAAAATAGTCATTCTAC
*
98569613 CACATAAGGGCAAAATAGTCATT-TAAT
1 CACATAAGGGCAAAATAGTCATTCT-AC
* * * * *
98569640 CACACAGGGGCAATATAGTCATTTTCC
1 CACATAAGGGCAAAATAGTCATTCTAC
98569667 CACA-AAGGG
1 CACATAAGGG
98569676 AGTCTAGATA
Statistics
Matches: 174, Mismatches: 20, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
26 9 0.05
27 163 0.94
28 2 0.01
ACGTcount: A:0.40, C:0.21, G:0.16, T:0.23
Consensus pattern (27 bp):
CACATAAGGGCAAAATAGTCATTCTAC
Found at i:98571892 original size:47 final size:47
Alignment explanation
Indices: 98571823--98572918 Score: 1993
Period size: 47 Copynumber: 23.4 Consensus size: 47
98571813 CAGCCAAGAC
* * * *
98571823 AGTGTATATATGTTATAAGGCCTAATAGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
98571870 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
98571917 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
98571964 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
98572011 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
98572058 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
*
98572105 AGTG--T-T-TGTAATAAGGCCTAATGGCCGATGTGATGAATGTGGA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
98572148 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
98572195 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
98572242 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
98572289 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
98572336 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
98572383 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
98572430 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
98572477 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
98572524 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
98572571 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
98572618 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
98572665 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
98572712 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
*
98572759 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
* *
98572806 AGTGTATATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
* * * * * * * * *
98572853 AGTTTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
* *
98572900 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
98572919 TCCCGAAGGG
Statistics
Matches: 1023, Mismatches: 22, Indels: 8
0.97 0.02 0.01
Matches are distributed among these distances:
43 40 0.04
44 1 0.00
45 2 0.00
46 1 0.00
47 979 0.96
ACGTcount: A:0.30, C:0.09, G:0.31, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
Found at i:98573093 original size:37 final size:37
Alignment explanation
Indices: 98573037--98573115 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
98573027 CCGAGCTCTA
* *
98573037 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
98573074 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
98573111 AAGAC
1 AAGAC
98573116 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:98575996 original size:27 final size:27
Alignment explanation
Indices: 98575961--98576210 Score: 242
Period size: 27 Copynumber: 9.4 Consensus size: 27
98575951 AAACATACAT
* *
98575961 CACAT-AGGGCAAAACAGTC-GTCTTAT
1 CACATAAGGGCAAAACAGTCATTC-TAC
* * *
98575987 CATATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTCTAC
* *
98576014 CATATAAGGGCAAAACAGTCATTCTAT
1 CACATAAGGGCAAAACAGTCATTCTAC
98576041 CACATAAGGGCAAAACAGTCATTCTAC
1 CACATAAGGGCAAAACAGTCATTCTAC
*
98576068 CACATAAGGGCAAAATAGTCATTCTAC
1 CACATAAGGGCAAAACAGTCATTCTAC
* * * *
98576095 CACATAAGGGC-ACATAGTTATTTTAC
1 CACATAAGGGCAAAACAGTCATTCTAC
* *
98576121 CATATAAGGGCAAAATAGTCACTT-TAC
1 CACATAAGGGCAAAACAGTCA-TTCTAC
* *
98576148 CACATAAGGGCAAAATAGTCATT-TAAT
1 CACATAAGGGCAAAACAGTCATTCT-AC
* * * * *
98576175 CACACAAGAGCAATATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTCTAC
98576202 CACA-AAGGG
1 CACATAAGGG
98576211 GGTCTAGGTG
Statistics
Matches: 194, Mismatches: 24, Indels: 12
0.84 0.10 0.05
Matches are distributed among these distances:
26 33 0.17
27 157 0.81
28 4 0.02
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTCTAC
Found at i:98576029 original size:54 final size:54
Alignment explanation
Indices: 98575966--98576171 Score: 274
Period size: 54 Copynumber: 3.8 Consensus size: 54
98575956 TACATCACAT
* * *
98575966 AGGGCAAAACAGTC-GTCTTATCATATAAGGGCAAAATAGTCATTTTACCATATA
1 AGGGCAAAACAGTCATTC-TACCACATAAGGGCAAAATAGTCATTTTACCATATA
* * * *
98576020 AGGGCAAAACAGTCATTCTATCACATAAGGGCAAAACAGTCATTCTACCACATA
1 AGGGCAAAACAGTCATTCTACCACATAAGGGCAAAATAGTCATTTTACCATATA
* * *
98576074 AGGGCAAAATAGTCATTCTACCACATAAGGGC-ACATAGTTATTTTACCATATA
1 AGGGCAAAACAGTCATTCTACCACATAAGGGCAAAATAGTCATTTTACCATATA
*
98576127 AGGGCAAAATAGTCACTT-TACCACATAAGGGCAAAATAGTCATTT
1 AGGGCAAAACAGTCA-TTCTACCACATAAGGGCAAAATAGTCATTT
98576172 AATCACACAA
Statistics
Matches: 135, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
53 45 0.33
54 88 0.65
55 2 0.01
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.25
Consensus pattern (54 bp):
AGGGCAAAACAGTCATTCTACCACATAAGGGCAAAATAGTCATTTTACCATATA
Found at i:98576152 original size:107 final size:108
Alignment explanation
Indices: 98575990--98576210 Score: 306
Period size: 107 Copynumber: 2.1 Consensus size: 108
98575980 GTCTTATCAT
*
98575990 ATAAGGGCAAAATAGTCATTTTACCATATAAGGGCAAAACAGTCATTCTATCACATAAGGGCAAA
1 ATAAGGGCAAAATAGTCATTTTACCATATAAGGGCAAAACAGTCATTCTACCACATAAGGGCAAA
* *
98576055 ACAGTCATTCT-ACCACATAAGGGCAAAATAGTCATTCTACCAC
66 ACAGTCATT-TAACCACACAAGAGCAAAATAGTCATTCTACCAC
* * *
98576098 ATAAGGGC-ACATAGTTATTTTACCATATAAGGGCAAAATAGTCACTT-TACCACATAAGGGCAA
1 ATAAGGGCAAAATAGTCATTTTACCATATAAGGGCAAAACAGTCA-TTCTACCACATAAGGGCAA
* * * *
98576161 AATAGTCATTTAATCACACAAGAGCAATATAGTCATTTTACCAC
65 AACAGTCATTTAACCACACAAGAGCAAAATAGTCATTCTACCAC
98576205 A-AAGGG
1 ATAAGGG
98576211 GGTCTAGGTG
Statistics
Matches: 101, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
106 6 0.06
107 85 0.84
108 10 0.10
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.24
Consensus pattern (108 bp):
ATAAGGGCAAAATAGTCATTTTACCATATAAGGGCAAAACAGTCATTCTACCACATAAGGGCAAA
ACAGTCATTTAACCACACAAGAGCAAAATAGTCATTCTACCAC
Found at i:98576201 original size:54 final size:54
Alignment explanation
Indices: 98575990--98576210 Score: 286
Period size: 54 Copynumber: 4.1 Consensus size: 54
98575980 GTCTTATCAT
* * *
98575990 ATAAGGGCAAAATAGTCATTTTACCATATAAGGGCAAAACAGTCATTCTATCAC
1 ATAAGGGCAAAATAGTCATTTTACCACATAAGGGCAAAATAGTCATTCTACCAC
* *
98576044 ATAAGGGCAAAACAGTCATTCTACCACATAAGGGCAAAATAGTCATTCTACCAC
1 ATAAGGGCAAAATAGTCATTTTACCACATAAGGGCAAAATAGTCATTCTACCAC
* * *
98576098 ATAAGGGC-ACATAGTTATTTTACCATATAAGGGCAAAATAGTCACTT-TACCAC
1 ATAAGGGCAAAATAGTCATTTTACCACATAAGGGCAAAATAGTCA-TTCTACCAC
* * * * * *
98576151 ATAAGGGCAAAATAGTCATTTAATCACACAAGAGCAATATAGTCATTTTACCAC
1 ATAAGGGCAAAATAGTCATTTTACCACATAAGGGCAAAATAGTCATTCTACCAC
98576205 A-AAGGG
1 ATAAGGG
98576211 GGTCTAGGTG
Statistics
Matches: 146, Mismatches: 18, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
53 52 0.36
54 94 0.64
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.24
Consensus pattern (54 bp):
ATAAGGGCAAAATAGTCATTTTACCACATAAGGGCAAAATAGTCATTCTACCAC
Found at i:98576228 original size:80 final size:80
Alignment explanation
Indices: 98575990--98576210 Score: 250
Period size: 80 Copynumber: 2.8 Consensus size: 80
98575980 GTCTTATCAT
* * * * * * * *
98575990 ATAAGGGCAAAATAGTCATTTTACCATATAAGGGCAAAACAGTCATTCTATCACATAAGGGCAAA
1 ATAAGGGCAAAATAGTCATTCTACCACACAAGAGC-ACATAGTCATTTTACCACATAAGGGCAAA
*
98576055 ACAGTCA-TTCTACCAC
65 ATAGTCACTT-TACCAC
* * * *
98576071 ATAAGGGCAAAATAGTCATTCTACCACATAAGGGCACATAGTTATTTTACCATATAAGGGCAAAA
1 ATAAGGGCAAAATAGTCATTCTACCACACAAGAGCACATAGTCATTTTACCACATAAGGGCAAAA
98576136 TAGTCACTTTACCAC
66 TAGTCACTTTACCAC
* *
98576151 ATAAGGGCAAAATAGTCATT-TAATCACACAAGAGCAATATAGTCATTTTACCACA-AAGGG
1 ATAAGGGCAAAATAGTCATTCT-ACCACACAAGAGC-ACATAGTCATTTTACCACATAAGGG
98576211 GGTCTAGGTG
Statistics
Matches: 122, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
79 1 0.01
80 70 0.57
81 51 0.42
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.24
Consensus pattern (80 bp):
ATAAGGGCAAAATAGTCATTCTACCACACAAGAGCACATAGTCATTTTACCACATAAGGGCAAAA
TAGTCACTTTACCAC
Found at i:98577412 original size:81 final size:81
Alignment explanation
Indices: 98577277--98577602 Score: 634
Period size: 81 Copynumber: 4.0 Consensus size: 81
98577267 AGAAGAACAG
98577277 TTGAAAGTGTTCGATTTTAGCAACACAAGAAGGGGCGCTTGATGAAAGTTGAAAGAACAGAGATA
1 TTGAAAGTGTTCGATTTTAGCAACACAAGAAGGGGCGCTTGATGAAAGTTGAAAGAACAGAGATA
98577342 AGGAGAGAAAAAGGTA
66 AGGAGAGAAAAAGGTA
98577358 TTGAAAGTGTTCGATTTTAGCAACACAAGAAGGGGCGCTTGATGAAAGTTGAAAGAACAGAGATA
1 TTGAAAGTGTTCGATTTTAGCAACACAAGAAGGGGCGCTTGATGAAAGTTGAAAGAACAGAGATA
98577423 AGGAGAGAAAAAGGTA
66 AGGAGAGAAAAAGGTA
98577439 TTGAAAGTGTTCGATTTTAGCAACACAAGAAGGGGCGCTTGATGAAAGTTGAAAGAACAGAGATA
1 TTGAAAGTGTTCGATTTTAGCAACACAAGAAGGGGCGCTTGATGAAAGTTGAAAGAACAGAGATA
98577504 AGGAGAGAAAAAGGTA
66 AGGAGAGAAAAAGGTA
*
98577520 TTGAAAGTGTTCGATTTTAGCAACACAAGAAGGGGCGCTTGATGAAAGCTGAAAGAACAGAGATA
1 TTGAAAGTGTTCGATTTTAGCAACACAAGAAGGGGCGCTTGATGAAAGTTGAAAGAACAGAGATA
*
98577585 AGGAGAGAAAATGGTA
66 AGGAGAGAAAAAGGTA
98577601 TT
1 TT
98577603 CGGCTAAGGT
Statistics
Matches: 243, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 243 1.00
ACGTcount: A:0.41, C:0.09, G:0.29, T:0.20
Consensus pattern (81 bp):
TTGAAAGTGTTCGATTTTAGCAACACAAGAAGGGGCGCTTGATGAAAGTTGAAAGAACAGAGATA
AGGAGAGAAAAAGGTA
Found at i:98583446 original size:336 final size:335
Alignment explanation
Indices: 98582665--98583666 Score: 1454
Period size: 336 Copynumber: 3.0 Consensus size: 335
98582655 AGGTGCTTTA
* * *
98582665 GTGAGTATCACCTTAAGTTTTTCAAAGCTTTTTTGTCTTTCCTCTATCCATACAAACTCCACATC
1 GTGAGCATCACCTTAAGTTTTTCAAAGCTTTTTTGTCTTTCCTCTATCCATGCGAACTCCACATC
* * * * *
98582730 TTTCTACAGTAGCTTTATTATGGGTATTGCAATGGTGGCGAACATTTCCACAAATTTGTAATAGT
66 TTTCTACAGTAGCTTTATTATGGGTGTAGCAATGGTGGCGAACCTTTCCACAAACTTGCAATAGT
* * *
98582795 ATTCTACTGACCTCATAAAGCTTCGCACCTCAGTAACACTTATTGGTCATTTCCACTCTAAAATC
131 ATTCTACTAACCTCATAAAGCTTCGCACCTCAGTAACACTTTTTGGTCATTTCCACTCTAAAATT
* * * *
98582860 TCCTCAATCTTTTTTTGGGTTTACGCAAACTCCCTCTGCAAAAATCACATAACCCAAGAATACTA
196 TCCTCAATC-TTCTTTGGGTCTACGCAAACTCCCTCTG-AAAAACCACATAACCCAAGAATGCTA
* * * * * *
98582925 CCTCTCTTAACAAAAATTCACACTTGCTGAGCTTCATGAATAGTTGCTTCTCACATAAAATATGT
259 CCTCCCTTAACCAAAATTCACACTTGCTGAGCTTCACGAATAGTTGCTTCTCTCGTAAAATTTGT
*
98582990 AACACAATTTGCAG
324 -A-ACAATTTACAG
*
98583004 GTGAGCATCACCTTAAGTTTTTCAAAGCTTTTTTGTCTTTCCTCTATCTATGCGAACTCCACATC
1 GTGAGCATCACCTTAAGTTTTTCAAAGCTTTTTTGTCTTTCCTCTATCCATGCGAACTCCACATC
* *
98583069 TTTCTGCAGTAGCTTTATTATGGGTGTCA-CAATGGTGGCGAACCTTTCCATAAACTTGCAATAG
66 TTTCTACAGTAGCTTTATTATGGGTGT-AGCAATGGTGGCGAACCTTTCCACAAACTTGCAATAG
* * * *
98583133 TATTCTACTAACCTCATAAAGTTTCGCACCTCAATAACACTTTTTGGTCATTTCCAATCTATAAT
130 TATTCTACTAACCTCATAAAGCTTCGCACCTCAGTAACACTTTTTGGTCATTTCCACTCTAAAAT
*
98583198 TTCCTCAATCTTCTTTGGGTCTACGCAAACTCCCTCCGTAAAAACCACATAACCCAAGAATGCTA
195 TTCCTCAATCTTCTTTGGGTCTACGCAAACTCCCTCTG-AAAAACCACATAACCCAAGAATGCTA
*
98583263 CCTCCCTTAACCAAAATTCACACTTGCTGAGCTTCACGAATAGTTGCTTCTCTCGCT-GAATTTG
259 CCTCCCTTAACCAAAATTCACACTTGCTGAGCTTCACGAATAGTTGCTTCTCTCG-TAAAATTTG
*
98583327 TAACAGTTTACAG
323 TAACAATTTACAG
* *
98583340 GTGAGCATCATCTTAAGTTTTTCAAATC-TTTTTGCTCTTTCCTCTATCCATGCGAACTCCACAT
1 GTGAGCATCACCTTAAGTTTTTCAAAGCTTTTTTG-TCTTTCCTCTATCCATGCGAACTCCACAT
* * * *
98583404 CTTTTTACAATAGCTTTATTATGGGTGTAGCAATGGTGGCGAACCCTTT-TACAAACTTGCCATA
65 CTTTCTACAGTAGCTTTATTATGGGTGTAGCAATGGTGGCGAA-CCTTTCCACAAACTTGCAATA
* * * *
98583468 GTATTCTACTAACTTCTTAAAGCTTCGCACCCCAGTAACACTTTTTGGTCATTTACACTCTAAAA
129 GTATTCTACTAACCTCATAAAGCTTCGCACCTCAGTAACACTTTTTGGTCATTTCCACTCTAAAA
* * * *
98583533 TTTCCTCAATCTTCTTTGCGTCTATGCAAACTCCCTCTGAAAAACTACATAACCCAAGAACGCTA
194 TTTCCTCAATCTTCTTTGGGTCTACGCAAACTCCCTCTGAAAAACCACATAACCCAAGAATGCTA
* * *
98583598 CCTCCCTTAACCAAAATTCACACTTGCTGAACTTTACGAATAGTTGTTTCTCTCGTAAAATTTGT
259 CCTCCCTTAACCAAAATTCACACTTGCTGAGCTTCACGAATAGTTGCTTCTCTCGTAAAATTTGT
98583663 AACA
324 AACA
98583667 CAGTTCGTAG
Statistics
Matches: 598, Mismatches: 59, Indels: 16
0.89 0.09 0.02
Matches are distributed among these distances:
334 1 0.00
335 94 0.16
336 206 0.34
337 6 0.01
338 105 0.18
339 186 0.31
ACGTcount: A:0.28, C:0.25, G:0.12, T:0.35
Consensus pattern (335 bp):
GTGAGCATCACCTTAAGTTTTTCAAAGCTTTTTTGTCTTTCCTCTATCCATGCGAACTCCACATC
TTTCTACAGTAGCTTTATTATGGGTGTAGCAATGGTGGCGAACCTTTCCACAAACTTGCAATAGT
ATTCTACTAACCTCATAAAGCTTCGCACCTCAGTAACACTTTTTGGTCATTTCCACTCTAAAATT
TCCTCAATCTTCTTTGGGTCTACGCAAACTCCCTCTGAAAAACCACATAACCCAAGAATGCTACC
TCCCTTAACCAAAATTCACACTTGCTGAGCTTCACGAATAGTTGCTTCTCTCGTAAAATTTGTAA
CAATTTACAG
Found at i:98590830 original size:77 final size:78
Alignment explanation
Indices: 98590736--98590897 Score: 236
Period size: 77 Copynumber: 2.1 Consensus size: 78
98590726 CAGTGATGTT
* * * *
98590736 TATCCGGACCTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCAGAC-TAGGGTCCGCAGGCTA
1 TATCCGGACCTAAGGTCCGCAGGCTATGTGCTAGAATTATAACCAGACTTAAGGTCCGCAGGCTA
* *
98590800 TGTGCTGGAATTA
66 CGTGCTGGAAATA
* *
98590813 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTAGAATTATAACTAGACTTAAGGTCCGCAGGCTA
1 TATCCGGACCTAAGGTCCGCAGGCTATGTGCTAGAATTATAACCAGACTTAAGGTCCGCAGGCTA
98590878 CGTGCTGGAAATA
66 CGTGCTGGAAATA
*
98590891 TGTCCGG
1 TATCCGG
98590898 GAAAAAGTCC
Statistics
Matches: 75, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
77 43 0.57
78 32 0.43
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (78 bp):
TATCCGGACCTAAGGTCCGCAGGCTATGTGCTAGAATTATAACCAGACTTAAGGTCCGCAGGCTA
CGTGCTGGAAATA
Found at i:98590841 original size:39 final size:39
Alignment explanation
Indices: 98590736--98590897 Score: 218
Period size: 39 Copynumber: 4.2 Consensus size: 39
98590726 CAGTGATGTT
* *
98590736 TATCCGGACCTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* *
98590775 TATCCAGAC-TAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
*
98590813 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTAGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* ** * *
98590852 TAACTAGACTTAAGGTCCGCAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
*
98590891 TGTCCGG
1 TATCCGG
98590898 GAAAAAGTCC
Statistics
Matches: 108, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
38 37 0.34
39 71 0.66
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:98594831 original size:13 final size:14
Alignment explanation
Indices: 98594815--98594843 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
98594805 TTTTAAATAT
98594815 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
98594828 TTATAATGGTTTAA
1 TTATAATGGTTTAA
98594842 TT
1 TT
98594844 CTTCGTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:98595310 original size:21 final size:21
Alignment explanation
Indices: 98595286--98595341 Score: 112
Period size: 21 Copynumber: 2.7 Consensus size: 21
98595276 GAGGAAGCAA
98595286 CAGTGAGGGAAGCAAAGGCAG
1 CAGTGAGGGAAGCAAAGGCAG
98595307 CAGTGAGGGAAGCAAAGGCAG
1 CAGTGAGGGAAGCAAAGGCAG
98595328 CAGTGAGGGAAGCA
1 CAGTGAGGGAAGCA
98595342 GAGCAAAGCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.38, C:0.14, G:0.43, T:0.05
Consensus pattern (21 bp):
CAGTGAGGGAAGCAAAGGCAG
Found at i:98595849 original size:43 final size:44
Alignment explanation
Indices: 98595717--98595960 Score: 162
Period size: 43 Copynumber: 5.7 Consensus size: 44
98595707 AAAATGACGT
* * * * * *
98595717 TAAAGACT-ACGTTATATAGCGTTGTTTGTAGGAAAAGCGTCGT
1 TAAAGACTCACATTCTATAGCGATGTTTGTGGGAAAAGCGCCGC
** ** * * * * *
98595760 TAAATG-C-CATGTTCTATAGTAACGTTTGCGGAAAAAGCACCAC
1 TAAA-GACTCACATTCTATAGCGATGTTTGTGGGAAAAGCGCCGC
* *
98595803 TAAAGACT-ACATTCTATAGCGGTGTTTGTGGGAAAAGTGCCGC
1 TAAAGACTCACATTCTATAGCGATGTTTGTGGGAAAAGCGCCGC
* * * *
98595846 TAAA-AGTCACGTTCTATAGCG-TCGTTTGTGAGAAAAGCGCTGC
1 TAAAGACTCACATTCTATAGCGAT-GTTTGTGGGAAAAGCGCCGC
* * * * * *
98595889 TAAAGGC-CACGTTCTATAGTGACGTTTCTGGAAAAAGCGCCGC
1 TAAAGACTCACATTCTATAGCGATGTTTGTGGGAAAAGCGCCGC
*
98595932 TAAAG-GTCACATTCTATAGCGATGTTTGT
1 TAAAGACTCACATTCTATAGCGATGTTTGT
98595961 TAGAAATGCA
Statistics
Matches: 150, Mismatches: 42, Indels: 18
0.71 0.20 0.09
Matches are distributed among these distances:
42 4 0.03
43 145 0.97
44 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.29
Consensus pattern (44 bp):
TAAAGACTCACATTCTATAGCGATGTTTGTGGGAAAAGCGCCGC
Found at i:98595872 original size:86 final size:86
Alignment explanation
Indices: 98595717--98595959 Score: 227
Period size: 86 Copynumber: 2.8 Consensus size: 86
98595707 AAAATGACGT
* * * * * * * * **
98595717 TAAAGACTACGTTATATAGCGTTGTTTGTAGGAAAAGCGTCGTTAAATGCCATGTTCTATAGTAA
1 TAAAGACTACGTTCTATAGCGATGTTTGTGGGAAAAGCGCCGCTAAAAGTCACGTTCTATAGCGA
98595782 CGTTTGCGGA-AAAAGCACCAC
66 CGTTTG-GGAGAAAAGCACCAC
* * * *
98595803 TAAAGACTACATTCTATAGCGGTGTTTGTGGGAAAAGTGCCGCTAAAAGTCACGTTCTATAGCGT
1 TAAAGACTACGTTCTATAGCGATGTTTGTGGGAAAAGCGCCGCTAAAAGTCACGTTCTATAGCGA
* * **
98595868 CGTTTGTGAGAAAAGCGCTGC
66 CGTTTGGGAGAAAAGCACCAC
* * * * * * * *
98595889 TAAAGGCCACGTTCTATAGTGACGTTTCTGGAAAAAGCGCCGCTAAAGGTCACATTCTATAGCGA
1 TAAAGACTACGTTCTATAGCGATGTTTGTGGGAAAAGCGCCGCTAAAAGTCACGTTCTATAGCGA
*
98595954 TGTTTG
66 CGTTTG
98595960 TTAGAAATGC
Statistics
Matches: 126, Mismatches: 30, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
85 2 0.02
86 124 0.98
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (86 bp):
TAAAGACTACGTTCTATAGCGATGTTTGTGGGAAAAGCGCCGCTAAAAGTCACGTTCTATAGCGA
CGTTTGGGAGAAAAGCACCAC
Found at i:98595976 original size:43 final size:42
Alignment explanation
Indices: 98595814--98596086 Score: 162
Period size: 43 Copynumber: 6.4 Consensus size: 42
98595804 AAAGACTACA
* * * *
98595814 TTCTATAGCGGTGTTTGTGGGAAAAGTGCCGCTAAAAGTCACG
1 TTCTATAGCGATGTTTGTGAGAAAA-AGCCGCTAAAGGTCACG
*
98595857 TTCTATAGCG-TCGTTTGTGAG-AAAAGCGCTGCTAAAGGCCACG
1 TTCTATAGCGAT-GTTTGTGAGAAAAAGC-C-GCTAAAGGTCACG
* * * *
98595900 TTCTATAGTGACGTTTCTG-GAAAAAGCGCCGCTAAAGGTCACA
1 TTCTATAGCGATGTTTGTGAGAAAAA--GCCGCTAAAGGTCACG
* * * *
98595943 TTCTATAGCGATGTTTGTTAG-AAATGCATCGCTAAAGGTAATG
1 TTCTATAGCGATGTTTGTGAGAAAAAGC--CGCTAAAGGTCACG
*** * * *
98595986 TTCTATAGCGGCATTTG-AAGGAAAAACGCTGCTAAAGGTCATG
1 TTCTATAGCGATGTTTGTGA-GAAAAA-GCCGCTAAAGGTCACG
* ** * * *
98596029 TTCTATAGTGGCGTTTGT-AGGAAAAATGCCGCTAAAGTTTATG
1 TTCTATAGCGATGTTTGTGA-GAAAAA-GCCGCTAAAGGTCACG
*
98596072 TTCTATAGCGGTGTT
1 TTCTATAGCGATGTT
98596087 GTTTTTCAAA
Statistics
Matches: 184, Mismatches: 32, Indels: 28
0.75 0.13 0.11
Matches are distributed among these distances:
41 4 0.02
42 7 0.04
43 164 0.89
44 5 0.03
45 4 0.02
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (42 bp):
TTCTATAGCGATGTTTGTGAGAAAAAGCCGCTAAAGGTCACG
Found at i:98595976 original size:129 final size:130
Alignment explanation
Indices: 98595725--98596065 Score: 365
Period size: 129 Copynumber: 2.6 Consensus size: 130
98595715 GTTAAAGACT
* * * * *
98595725 ACGTTATATAGCGTTGTTTGTAGGAAAAGCG-TCGTTAAATGCCATGTTCTATAGTAACGTTTGC
1 ACGTTCTATAGCGTCGTTTGTAGGAAAAGCGCT-GCTAAAGGCCATGTTCTATAGTGACGTTT-C
* * * *
98595789 -GGAAAAAGCACCACTAAA-GACTACATTCTATAGCGGTGTTTGTGGGAAAAGTGCCGCTAAAAG
64 TGGAAAAAGCGCCGCTAAAGGACTACATTCTATAGCGATGTTTGTGAGAAAAGTGCCGCTAAAAG
*
98595852 TC
129 TA
*
98595854 ACGTTCTATAGCGTCGTTTGT-GAGAAAAGCGCTGCTAAAGGCCACGTTCTATAGTGACGTTTCT
1 ACGTTCTATAGCGTCGTTTGTAG-GAAAAGCGCTGCTAAAGGCCATGTTCTATAGTGACGTTTCT
* * *
98595918 GGAAAAAGCGCCGCTAAAGGTC-ACATTCTATAGCGATGTTTGTTAG-AAA-TGCATCGCTAAAG
65 GGAAAAAGCGCCGCTAAAGGACTACATTCTATAGCGATGTTTGTGAGAAAAGTGC--CGCTAAAA
98595980 GTA
128 GTA
* * * * * * * *
98595983 ATGTTCTATAGCGGCATTTGAAGGAAAAACGCTGCTAAAGGTCATGTTCTATAGTGGCGTTTGTA
1 ACGTTCTATAGCGTCGTTTGTAGGAAAAGCGCTGCTAAAGGCCATGTTCTATAGTGACGTTTCT-
*
98596048 GGAAAAA-TGCCGCTAAAG
65 GGAAAAAGCGCCGCTAAAG
98596066 TTTATGTTCT
Statistics
Matches: 180, Mismatches: 24, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
127 3 0.02
128 5 0.03
129 161 0.89
130 11 0.06
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (130 bp):
ACGTTCTATAGCGTCGTTTGTAGGAAAAGCGCTGCTAAAGGCCATGTTCTATAGTGACGTTTCTG
GAAAAAGCGCCGCTAAAGGACTACATTCTATAGCGATGTTTGTGAGAAAAGTGCCGCTAAAAGTA
Found at i:98596045 original size:86 final size:86
Alignment explanation
Indices: 98595835--98596082 Score: 211
Period size: 86 Copynumber: 2.9 Consensus size: 86
98595825 TGTTTGTGGG
* * * * **
98595835 AAAAGTGCCGCTAAAAGTCACGTTCTATAGCGTCGTTTGT-GAGAAAA-GCGCTGCTAAAGGCCA
1 AAAAGCGCCGCTAAAGGTCACATTCTATAGCGACGTTTGTAG-GAAAATGC-C-GCTAAAGGTAA
* * * * **
98595898 CGTTCTATAGTGACGTTT-CTGGA
63 TGTTCTATAGCGGCATTTGAAGGA
*
98595921 AAAAGCGCCGCTAAAGGTCACATTCTATAGCGATGTTTGTTA-G-AAATGCATCGCTAAAGGTAA
1 AAAAGCGCCGCTAAAGGTCACATTCTATAGCGACGTTTG-TAGGAAAATGC--CGCTAAAGGTAA
98595984 TGTTCTATAGCGGCATTTGAAGGA
63 TGTTCTATAGCGGCATTTGAAGGA
* ** * * * *
98596008 AAAA-CGCTGCTAAAGGTCATGTTCTATAGTGGCGTTTGTAGGAAAAATGCCGCTAAAGTTTATG
1 AAAAGCGCCGCTAAAGGTCACATTCTATAGCGACGTTTGTAGG-AAAATGCCGCTAAAGGTAATG
98596072 TTCTATAGCGG
65 TTCTATAGCGG
98596083 TGTTGTTTTT
Statistics
Matches: 132, Mismatches: 22, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
85 5 0.04
86 112 0.85
87 9 0.07
88 6 0.05
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (86 bp):
AAAAGCGCCGCTAAAGGTCACATTCTATAGCGACGTTTGTAGGAAAATGCCGCTAAAGGTAATGT
TCTATAGCGGCATTTGAAGGA
Found at i:98596762 original size:28 final size:28
Alignment explanation
Indices: 98596731--98597004 Score: 116
Period size: 28 Copynumber: 9.1 Consensus size: 28
98596721 TCAATAAGAG
98596731 TTATAAAAATAATAAATTTTAATAAAAA
1 TTATAAAAATAATAAATTTTAATAAAAA
* *
98596759 TTATTTAAAATAGAATAAATTATAAATATCGTAAAAA
1 TTA--TAAAA-ATAATAAATT-T---TA--ATAAAAA
* ** * * *
98596796 ATATAAAAATTGTAAAATGTTATAAAAA
1 TTATAAAAATAATAAATTTTAATAAAAA
* ** * * *
98596824 TTATAAAAAAAATAAAAATCAATAAGAC
1 TTATAAAAATAATAAATTTTAATAAAAA
*
98596852 TTATACAAATAATAAATTTTAATAAAAA
1 TTATAAAAATAATAAATTTTAATAAAAA
* *
98596880 TTATTTAAAATAGAATAAATTATAAATATCGTAAAAA
1 TTA--TAAAA-ATAATAAATT-T---TA--ATAAAAA
* ** * * *
98596917 ATATAAAAATTGTAAAATGTTATAAAAA
1 TTATAAAAATAATAAATTTTAATAAAAA
* ** * * *
98596945 TTATAAAAAAAATAAAAATCAATAAGAC
1 TTATAAAAATAATAAATTTTAATAAAAA
*
98596973 TTATACAAATAATAAATTTTAATAAAAA
1 TTATAAAAATAATAAATTTTAATAAAAA
98597001 TTAT
1 TTAT
98597005 TTAAAATAGA
Statistics
Matches: 173, Mismatches: 55, Indels: 36
0.66 0.21 0.14
Matches are distributed among these distances:
28 100 0.58
30 11 0.06
31 18 0.10
32 2 0.01
34 12 0.07
35 14 0.08
37 16 0.09
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.32
Consensus pattern (28 bp):
TTATAAAAATAATAAATTTTAATAAAAA
Found at i:98596795 original size:56 final size:56
Alignment explanation
Indices: 98596734--98597037 Score: 192
Period size: 58 Copynumber: 5.1 Consensus size: 56
98596724 ATAAGAGTTA
98596734 TAAAAATAATAAATTTTAATAAAAATTATTTAAAATAGAATAAATTATAAATATCG
1 TAAAAATAATAAATTTTAATAAAAATTATTTAAAATAGAATAAATTATAAATATCG
* * * * * *
98596790 TAAAAAATATAAAAATTGTAAAATGTTATAAAA--ATTATAAAA-AAAATAAA-AATCAATAAGA
1 T-AAAAATA-ATAAATT-T-TAA---TA-AAAATTATT-TAAAATAGAATAAATTATAAAT-A-T
*
98596851 CT
55 CG
98596853 TATACAAATAATAAATTTTAATAAAAATTATTTAAAATAGAATAAATTATAAATATCG
1 TA-A-AAATAATAAATTTTAATAAAAATTATTTAAAATAGAATAAATTATAAATATCG
* * * * * *
98596911 TAAAAAATATAAAAATTGTAAAATGTTATAAAA--ATTATAAAA-AAAATAAA-AATCAATAAGA
1 T-AAAAATA-ATAAATT-T-TAA---TA-AAAATTATT-TAAAATAGAATAAATTATAAAT-A-T
*
98596972 CT
55 CG
98596974 TATACAAATAATAAATTTTAATAAAAATTATTTAAAATAGAATAAATTATAAATATCG
1 TA-A-AAATAATAAATTTTAATAAAAATTATTTAAAATAGAATAAATTATAAATATCG
98597032 TAAAAA
1 TAAAAA
98597038 ATATAAAAAT
Statistics
Matches: 186, Mismatches: 28, Indels: 68
0.66 0.10 0.24
Matches are distributed among these distances:
56 4 0.02
57 21 0.11
58 32 0.17
59 25 0.13
60 14 0.08
61 14 0.08
62 26 0.14
63 32 0.17
64 18 0.10
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.32
Consensus pattern (56 bp):
TAAAAATAATAAATTTTAATAAAAATTATTTAAAATAGAATAAATTATAAATATCG
Found at i:98596821 original size:10 final size:9
Alignment explanation
Indices: 98596700--98597105 Score: 147
Period size: 9 Copynumber: 43.8 Consensus size: 9
98596690 GACATGTGTA
*
98596700 AAAAAATAT
1 AAAAATTAT
98596709 AAAAA--AT
1 AAAAATTAT
*
98596716 AAAAATCAAT
1 AAAAAT-TAT
* *
98596726 AAGAGTTAT
1 AAAAATTAT
*
98596735 AAAAATAAT
1 AAAAATTAT
**
98596744 AAATTTTAAT
1 AAAAATT-AT
98596754 AAAAATTATT
1 AAAAATTA-T
* *
98596764 TAAAA-TAG
1 AAAAATTAT
98596772 AATAAATTAT
1 AA-AAATTAT
* **
98596782 AAATATCGT
1 AAAAATTAT
*
98596791 AAAAAATAT
1 AAAAATTAT
*
98596800 AAAAATTGT
1 AAAAATTAT
*
98596809 AAAATGTTAT
1 AAAA-ATTAT
98596819 AAAAATTAT
1 AAAAATTAT
**
98596828 AAAAAAAAT
1 AAAAATTAT
*
98596837 AAAAATCAAT
1 AAAAAT-TAT
* *
98596847 AAGACTTAT
1 AAAAATTAT
* *
98596856 ACAAATAAT
1 AAAAATTAT
**
98596865 AAATTTTAAT
1 AAAAATT-AT
98596875 AAAAATTATT
1 AAAAATTA-T
* *
98596885 TAAAA-TAG
1 AAAAATTAT
98596893 AATAAATTAT
1 AA-AAATTAT
* **
98596903 AAATATCGT
1 AAAAATTAT
*
98596912 AAAAAATAT
1 AAAAATTAT
*
98596921 AAAAATTGT
1 AAAAATTAT
*
98596930 AAAATGTTAT
1 AAAA-ATTAT
98596940 AAAAATTAT
1 AAAAATTAT
**
98596949 AAAAAAAAT
1 AAAAATTAT
*
98596958 AAAAATCAAT
1 AAAAAT-TAT
* *
98596968 AAGACTTAT
1 AAAAATTAT
* *
98596977 ACAAATAAT
1 AAAAATTAT
**
98596986 AAATTTTAAT
1 AAAAATT-AT
98596996 AAAAATTATT
1 AAAAATTA-T
* *
98597006 TAAAA-TAG
1 AAAAATTAT
98597014 AATAAATTAT
1 AA-AAATTAT
* **
98597024 AAATATCGT
1 AAAAATTAT
*
98597033 AAAAAATAT
1 AAAAATTAT
*
98597042 AAAAATTGT
1 AAAAATTAT
*
98597051 AAAATGTTAT
1 AAAA-ATTAT
98597061 AAAAATTAT
1 AAAAATTAT
**
98597070 AAAAAAAAT
1 AAAAATTAT
*
98597079 AAAAATCAAT
1 AAAAAT-TAT
*
98597089 AAAAGTTAT
1 AAAAATTAT
98597098 AGAAAATT
1 A-AAAATT
98597106 TTATGCTTCT
Statistics
Matches: 278, Mismatches: 97, Indels: 43
0.67 0.23 0.10
Matches are distributed among these distances:
7 7 0.03
8 3 0.01
9 166 0.60
10 102 0.37
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.31
Consensus pattern (9 bp):
AAAAATTAT
Found at i:98596844 original size:121 final size:121
Alignment explanation
Indices: 98596709--98597104 Score: 738
Period size: 121 Copynumber: 3.3 Consensus size: 121
98596699 AAAAAAATAT
*
98596709 AAAAAATAAAAATCAATAAGAGTTATAAAAATAATAAATTTTAATAAAAATTATTTAAAATAGAA
1 AAAAAATAAAAATCAATAAGACTTATAAAAATAATAAATTTTAATAAAAATTATTTAAAATAGAA
98596774 TAAATTATAAATATCGTAAAAAATATAAAAATTGTAAAATGTTATAAAAATTATAA
66 TAAATTATAAATATCGTAAAAAATATAAAAATTGTAAAATGTTATAAAAATTATAA
*
98596830 AAAAAATAAAAATCAATAAGACTTATACAAATAATAAATTTTAATAAAAATTATTTAAAATAGAA
1 AAAAAATAAAAATCAATAAGACTTATAAAAATAATAAATTTTAATAAAAATTATTTAAAATAGAA
98596895 TAAATTATAAATATCGTAAAAAATATAAAAATTGTAAAATGTTATAAAAATTATAA
66 TAAATTATAAATATCGTAAAAAATATAAAAATTGTAAAATGTTATAAAAATTATAA
*
98596951 AAAAAATAAAAATCAATAAGACTTATACAAATAATAAATTTTAATAAAAATTATTTAAAATAGAA
1 AAAAAATAAAAATCAATAAGACTTATAAAAATAATAAATTTTAATAAAAATTATTTAAAATAGAA
98597016 TAAATTATAAATATCGTAAAAAATATAAAAATTGTAAAATGTTATAAAAATTATAA
66 TAAATTATAAATATCGTAAAAAATATAAAAATTGTAAAATGTTATAAAAATTATAA
* *
98597072 AAAAAATAAAAATCAATAAAAGTTATAGAAAAT
1 AAAAAATAAAAATCAATAAGACTTATA-AAAAT
98597105 TTTATGCTTC
Statistics
Matches: 269, Mismatches: 5, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
121 265 0.99
122 4 0.01
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.31
Consensus pattern (121 bp):
AAAAAATAAAAATCAATAAGACTTATAAAAATAATAAATTTTAATAAAAATTATTTAAAATAGAA
TAAATTATAAATATCGTAAAAAATATAAAAATTGTAAAATGTTATAAAAATTATAA
Found at i:98596856 original size:37 final size:37
Alignment explanation
Indices: 98596815--98596988 Score: 93
Period size: 37 Copynumber: 4.4 Consensus size: 37
98596805 TTGTAAAATG
98596815 TTATAAAAATTATAAAAAAAATAAAAATCAATAAGAC
1 TTATAAAAATTATAAAAAAAATAAAAATCAATAAGAC
* * *
98596852 TTATACAAATAATAAATTTTAATAAAAATTATTTAAAATAGAATAA-A-
1 -T-T----ATAA-AAATTATAA-AAAAA--A-TAAAAAT-CAATAAGAC
* ** * ** * *
98596899 TTATAAATATCGTAAAAAATATAAAAAT-TGTAAAATG
1 TTATAAAAATTATAAAAAAAATAAAAATCAATAAGA-C
98596936 TTATAAAAATTATAAAAAAAATAAAAATCAATAAGAC
1 TTATAAAAATTATAAAAAAAATAAAAATCAATAAGAC
* *
98596973 TTATACAAATAATAAA
1 TTATAAAAATTATAAA
98596989 TTTTAATAAA
Statistics
Matches: 101, Mismatches: 20, Indels: 31
0.66 0.13 0.20
Matches are distributed among these distances:
34 3 0.03
35 1 0.01
36 6 0.06
37 39 0.39
38 5 0.05
39 5 0.05
40 6 0.06
41 4 0.04
43 4 0.04
44 8 0.08
45 6 0.06
46 1 0.01
47 1 0.01
48 7 0.07
49 5 0.05
ACGTcount: A:0.63, C:0.04, G:0.03, T:0.30
Consensus pattern (37 bp):
TTATAAAAATTATAAAAAAAATAAAAATCAATAAGAC
Found at i:98597055 original size:28 final size:27
Alignment explanation
Indices: 98597007--98597092 Score: 64
Period size: 28 Copynumber: 3.1 Consensus size: 27
98596997 AAAATTATTT
* *
98597007 AAAATAGAATAAATTATAAATATCGTAA
1 AAAATATAA-AAATTATAAATATCATAA
* * *
98597035 AAAATATAAAAATTGTAAAATGTTATAA
1 AAAATATAAAAATTAT-AAATATCATAA
* ** *
98597063 AAATTATAAAAAAAATAAAAATCAATAA
1 AAAATATAAAAATTATAAATATC-ATAA
98597091 AA
1 AA
98597093 GTTATAGAAA
Statistics
Matches: 44, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
27 10 0.23
28 34 0.77
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.27
Consensus pattern (27 bp):
AAAATATAAAAATTATAAATATCATAA
Found at i:98597835 original size:88 final size:90
Alignment explanation
Indices: 98597699--98597907 Score: 227
Period size: 88 Copynumber: 2.4 Consensus size: 90
98597689 TTTTTTTAAA
* * * *
98597699 AAAAAAAAGCAATTAAGCCTTTGCTTTTGTTTTCACCCAATTGGATACTTGACCTATCAAAATGT
1 AAAAGAAAGCAATTAAGCCTCTGCTTTTGTTTTCACCCAATTGGATACTTAAACTATCAAAA--T
*
98597764 ACA-AAAAAAA-CTCTCAAACTTTTTC
64 ACATAAAAAAAGCCCTCAAACTTTTTC
* * *
98597789 AAAAGAAA-CAATTAAGCCTCT-CTTGTT-TTTTCACTCAATTGGATACTTAAACTGTTAAAATA
1 AAAAGAAAGCAATTAAGCCTCTGCTT-TTGTTTTCACCCAATTGGATACTTAAACTATCAAAATA
*
98597851 CATAAAAAAAGCCCTTAAACTTTTTC
65 CATAAAAAAAGCCCTCAAACTTTTTC
* *
98597877 AAAAG--AGTAATTAAGCC-CTTGCTTTTTTTTT
1 AAAAGAAAGCAATTAAGCCTC-TGCTTTTGTTTT
98597908 TGGCACTCAA
Statistics
Matches: 102, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
86 6 0.06
87 19 0.19
88 56 0.55
89 14 0.14
90 7 0.07
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.35
Consensus pattern (90 bp):
AAAAGAAAGCAATTAAGCCTCTGCTTTTGTTTTCACCCAATTGGATACTTAAACTATCAAAATAC
ATAAAAAAAGCCCTCAAACTTTTTC
Found at i:98598150 original size:9 final size:9
Alignment explanation
Indices: 98598122--98598182 Score: 50
Period size: 9 Copynumber: 6.3 Consensus size: 9
98598112 TTAGAAAATT
98598122 ATTATAAAA
1 ATTATAAAA
*
98598131 ATAGTAAAAAA
1 AT--TATAAAA
98598142 ATTATAAAA
1 ATTATAAAA
*
98598151 TTTTATAAAA
1 -ATTATAAAA
*
98598161 ATCATAAAA
1 ATTATAAAA
*
98598170 AATATATAAA
1 ATTATA-AAA
98598180 ATT
1 ATT
98598183 GTATAAAGTG
Statistics
Matches: 40, Mismatches: 8, Indels: 7
0.73 0.15 0.13
Matches are distributed among these distances:
9 19 0.47
10 13 0.32
11 8 0.20
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (9 bp):
ATTATAAAA
Found at i:98598159 original size:30 final size:29
Alignment explanation
Indices: 98598110--98598189 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 29
98598100 TTTTATTAAG
*
98598110 AATTAGAAAATTATTATAAAAAT-AGTAAAAA
1 AATTATAAAATT-TTATAAAAATCA-T-AAAA
98598141 AATTATAAAATTTTATAAAAATCATAAAA
1 AATTATAAAATTTTATAAAAATCATAAAA
*
98598170 AATATATAAAATTGTATAAA
1 AAT-TATAAAATTTTATAAA
98598190 GTGGTAAGAA
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
29 7 0.16
30 26 0.58
31 12 0.27
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.33
Consensus pattern (29 bp):
AATTATAAAATTTTATAAAAATCATAAAA
Found at i:98598161 original size:11 final size:11
Alignment explanation
Indices: 98598111--98598180 Score: 53
Period size: 10 Copynumber: 6.8 Consensus size: 11
98598101 TTTATTAAGA
* *
98598111 ATTAGAAAATT
1 ATTATAAAAAT
98598122 ATTATAAAAAT
1 ATTATAAAAAT
*
98598133 AGTA-AAAAA-
1 ATTATAAAAAT
98598142 ATTAT-AAAAT
1 ATTATAAAAAT
*
98598152 TTTATAAAAAT
1 ATTATAAAAAT
98598163 CA-TA-AAAAAT
1 -ATTATAAAAAT
98598173 A-TATAAAA
1 ATTATAAAA
98598181 TTGTATAAAG
Statistics
Matches: 48, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
9 10 0.21
10 19 0.40
11 19 0.40
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.31
Consensus pattern (11 bp):
ATTATAAAAAT
Found at i:98598511 original size:56 final size:56
Alignment explanation
Indices: 98598436--98598595 Score: 295
Period size: 56 Copynumber: 2.9 Consensus size: 56
98598426 TTTTGATTAA
*
98598436 TTTTATA-TTTTTTGTCTATTTTTAGTAAATTTTAAATATTTTTGTATTTTCATTT
1 TTTTATACTTTTTTTTCTATTTTTAGTAAATTTTAAATATTTTTGTATTTTCATTT
98598491 TTTTATACTTTTTTTTCTATTTTTAGTAAATTTTAAATATTTTTGTATTTTCATTT
1 TTTTATACTTTTTTTTCTATTTTTAGTAAATTTTAAATATTTTTGTATTTTCATTT
*
98598547 TTTTATACTTTTTTTTCTATTTTTAGTAAATTTTAAATATTTTTTTATT
1 TTTTATACTTTTTTTTCTATTTTTAGTAAATTTTAAATATTTTTGTATT
98598596 AAAATTTAAT
Statistics
Matches: 102, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
55 7 0.07
56 95 0.93
ACGTcount: A:0.24, C:0.04, G:0.04, T:0.68
Consensus pattern (56 bp):
TTTTATACTTTTTTTTCTATTTTTAGTAAATTTTAAATATTTTTGTATTTTCATTT
Found at i:98598591 original size:22 final size:21
Alignment explanation
Indices: 98598566--98598612 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
98598556 TTTTTTTCTA
* *
98598566 TTTTTAGTAAATTTTAAATATT
1 TTTTTAGTAAAATTT-AATAAT
*
98598588 TTTTTATTAAAATTTAATAAT
1 TTTTTAGTAAAATTTAATAAT
98598609 TTTT
1 TTTT
98598613 ATAAGTTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (21 bp):
TTTTTAGTAAAATTTAATAAT
Found at i:98599860 original size:49 final size:50
Alignment explanation
Indices: 98599807--98599906 Score: 139
Period size: 49 Copynumber: 2.0 Consensus size: 50
98599797 ATACATAAAA
* *
98599807 TAAAAAACAAACAACAAAATCCATTATAAG-TTTATCTCCCTAGGTATTT
1 TAAAAAACAAACAACAAAATCCATCATAAGATTCATCTCCCTAGGTATTT
* * * *
98599856 TAAAAATCAAACGACAGAATCCATCATAGGATTCATCTCCCTAGGTATTT
1 TAAAAAACAAACAACAAAATCCATCATAAGATTCATCTCCCTAGGTATTT
98599906 T
1 T
98599907 GAAATTAGTT
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
49 25 0.57
50 19 0.43
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (50 bp):
TAAAAAACAAACAACAAAATCCATCATAAGATTCATCTCCCTAGGTATTT
Found at i:98610449 original size:16 final size:17
Alignment explanation
Indices: 98610422--98610456 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
98610412 ATATAAATAA
98610422 TAAATAAATTTGAATTT
1 TAAATAAATTTGAATTT
98610439 TAAAT-AATTTGAATTT
1 TAAATAAATTTGAATTT
98610455 TA
1 TA
98610457 CAGAAATCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.49
Consensus pattern (17 bp):
TAAATAAATTTGAATTT
Found at i:98611574 original size:26 final size:26
Alignment explanation
Indices: 98611537--98611628 Score: 73
Period size: 26 Copynumber: 3.5 Consensus size: 26
98611527 AGCTAATAAC
*
98611537 ATTATAAAATTAAAGGAATCAAATTAT
1 ATTA-AAAATTAAAGAAATCAAATTAT
*
98611564 ATTAAAAATTAAA-ACATAT-AAATTAA
1 ATTAAAAATTAAAGA-A-ATCAAATTAT
* * * *
98611590 ATCT-CAAAGTAAAGAAACCAAATTTT
1 AT-TAAAAATTAAAGAAATCAAATTAT
98611616 ATTAAAAATTAAA
1 ATTAAAAATTAAA
98611629 TTAAGTATAT
Statistics
Matches: 50, Mismatches: 9, Indels: 13
0.69 0.12 0.18
Matches are distributed among these distances:
25 2 0.04
26 40 0.80
27 8 0.16
ACGTcount: A:0.59, C:0.07, G:0.04, T:0.30
Consensus pattern (26 bp):
ATTAAAAATTAAAGAAATCAAATTAT
Found at i:98612677 original size:23 final size:23
Alignment explanation
Indices: 98612651--98612694 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
98612641 AGCATACATG
*
98612651 CCGTAATGCTAACCATTCATATA
1 CCGTAATACTAACCATTCATATA
98612674 CCGTAATACTAACCATTCATA
1 CCGTAATACTAACCATTCATA
98612695 CCAAACAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (23 bp):
CCGTAATACTAACCATTCATATA
Found at i:98626166 original size:51 final size:50
Alignment explanation
Indices: 98626111--98626209 Score: 126
Period size: 51 Copynumber: 2.0 Consensus size: 50
98626101 CTACCTTATA
* * *
98626111 ACATGTAACACATCCATAATGAACTTGGACCTCTCAACGAGCTCGGATGTT
1 ACATGTAACACATCCATAATAAACTCGGACCACTCAAC-AGCTCGGATGTT
* * * *
98626162 ACATGTATCGCATCCATTATAAACTCGGACCACTCAACAGCTTGGATG
1 ACATGTAACACATCCATAATAAACTCGGACCACTCAACAGCTCGGATG
98626210 CTTGCATCCA
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
50 9 0.22
51 32 0.78
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (50 bp):
ACATGTAACACATCCATAATAAACTCGGACCACTCAACAGCTCGGATGTT
Found at i:98626337 original size:43 final size:41
Alignment explanation
Indices: 98626224--98626337 Score: 156
Period size: 43 Copynumber: 2.7 Consensus size: 41
98626214 CATCCATAAT
98626224 GAACTCGGACCACTCAACGAGCTCAGATGTCTCATATATCAC
1 GAACTCGGACCACTCAACGAGCTCAGAT-TCTCATATATCAC
* * * *
98626266 GAACTGGGACCACTCAACAAGTTTAGATTCTCACATATATCAC
1 GAACTCGGACCACTCAACGAGCTCAGATTCT--CATATATCAC
*
98626309 GAACTCGGACCGCTCAACGAGCTCAGATT
1 GAACTCGGACCACTCAACGAGCTCAGATT
98626338 TCTTAATTCC
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
41 3 0.05
42 24 0.39
43 34 0.56
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.22
Consensus pattern (41 bp):
GAACTCGGACCACTCAACGAGCTCAGATTCTCATATATCAC
Found at i:98628741 original size:26 final size:26
Alignment explanation
Indices: 98628705--98628758 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
98628695 GGTGTTGAAA
98628705 GTAAGTATAATTATGATGATTTAAAT
1 GTAAGTATAATTATGATGATTTAAAT
98628731 GTAAGTATAATTATGATGATTTAAAT
1 GTAAGTATAATTATGATGATTTAAAT
98628757 GT
1 GT
98628759 TCAATATTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.41, C:0.00, G:0.17, T:0.43
Consensus pattern (26 bp):
GTAAGTATAATTATGATGATTTAAAT
Found at i:98631187 original size:25 final size:25
Alignment explanation
Indices: 98631153--98631209 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
98631143 TTCACTGTAA
98631153 AGATACTTCACTAGGGACCCCGCAG
1 AGATACTTCACTAGGGACCCCGCAG
* * * *
98631178 AGATAGTTCATTGGGGACCCCGCTG
1 AGATACTTCACTAGGGACCCCGCAG
*
98631203 GGATACT
1 AGATACT
98631210 AGATGTTCGC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.28, T:0.21
Consensus pattern (25 bp):
AGATACTTCACTAGGGACCCCGCAG
Found at i:98641037 original size:69 final size:69
Alignment explanation
Indices: 98640926--98641541 Score: 441
Period size: 69 Copynumber: 9.1 Consensus size: 69
98640916 CTATAGTCAA
* * * * * * *
98640926 TAAAAACAAGGTTTACAGGCGAAGAGCTGAAGCCTTTGAAACAATTAGCGAGAGCAAAGCTCCCA
1 TAAAAACAAGGTTCACAGGTGAAGAGCCGCAGCCTCTAAAACAGTTAGCGAGAGCAAAGCTCCCA
98640991 GCTG
66 GCTG
* * * * * * *
98640995 TAAAAAAAAGGATCACAGATGACGATCCGTATCCTCTAAAACAGTT-----------AGCTCCCA
1 TAAAAACAAGGTTCACAGGTGAAGAGCCGCAGCCTCTAAAACAGTTAGCGAGAGCAAAGCTCCCA
**
98641049 GCAA
66 GCTG
*** * * *
98641053 TAAAAACAAGGTTTTGTAGGTGAAGAGCCGTAGCCCCTAAAACAGTTAGCAAGAGCAAAGCTCCC
1 TAAAAACAAGG-TTCACAGGTGAAGAGCCGCAGCCTCTAAAACAGTTAGCGAGAGCAAAGCTCCC
98641118 AGCTG
65 AGCTG
* * * *
98641123 TAAAAACAAGGTTTACAGGTGAAGAGCCGCAACCACTAAAACAGTTAGTGAGAGCAAAGCTCCCA
1 TAAAAACAAGGTTCACAGGTGAAGAGCCGCAGCCTCTAAAACAGTTAGCGAGAGCAAAGCTCCCA
*
98641188 GTTG
66 GCTG
* * *** * * * ** * *
98641192 TAAAAAAAATGTTCACAAACGAAGAGCCACAACCTCTAAAACAATTAGTAAGGGCAAAGCTCTCA
1 TAAAAACAAGGTTCACAGGTGAAGAGCCGCAGCCTCTAAAACAGTTAGCGAGAGCAAAGCTCCCA
*
98641257 GTTG
66 GCTG
* * * * * * * *
98641261 TGAAAAA-AAGGTTCGCAGGTGAAGAGCCGTAGGCTTTAAAATAGTTAGCGGGAGTAAAGCTCCT
1 T-AAAAACAAGGTTCACAGGTGAAGAGCCGCAGCCTCTAAAACAGTTAGCGAGAGCAAAGCTCCC
*
98641325 AGTTG
65 AGCTG
** * ** * * * *
98641330 GGAAAACAAGGTTTC-TAGGCAAAGAGCTGCAGCCTTTAAAACAGTTAGCAAGAGCAAAGCTCTC
1 TAAAAACAAGG-TTCACAGGTGAAGAGCCGCAGCCTCTAAAACAGTTAGCGAGAGCAAAGCTCCC
98641394 AGCTG
65 AGCTG
* * * * *
98641399 TGAAAACAAGGTTCATAGGTGAAAAGCTGCAGCCTCTAAAACAATTAGCGAGAGCAAAGCTCCCA
1 TAAAAACAAGGTTCACAGGTGAAGAGCCGCAGCCTCTAAAACAGTTAGCGAGAGCAAAGCTCCCA
98641464 GCTG
66 GCTG
* * ** * * * *
98641468 TAAAAACATA-GTTCACAGGAGAAGATCCATAGCCTTTAAAATAGATAGTGAGAGCAAAGCTCCC
1 TAAAAACA-AGGTTCACAGGTGAAGAGCCGCAGCCTCTAAAACAGTTAGCGAGAGCAAAGCTCCC
**
98641532 AATTG
65 AGCTG
98641537 TAAAA
1 TAAAA
98641542 TCAAAGCTCG
Statistics
Matches: 426, Mismatches: 104, Indels: 34
0.76 0.18 0.06
Matches are distributed among these distances:
58 20 0.05
59 26 0.06
68 7 0.02
69 343 0.81
70 30 0.07
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.19
Consensus pattern (69 bp):
TAAAAACAAGGTTCACAGGTGAAGAGCCGCAGCCTCTAAAACAGTTAGCGAGAGCAAAGCTCCCA
GCTG
Found at i:98641162 original size:128 final size:127
Alignment explanation
Indices: 98640923--98641170 Score: 316
Period size: 128 Copynumber: 1.9 Consensus size: 127
98640913 AAACTATAGT
* ** * *
98640923 CAATAAAAACAAGGTTTACAGGCGAAGAGCTGAAGCCTTTGAAACAATTAGCGAGAGCAAAGCTC
1 CAATAAAAACAAGGTTTACAGGCGAAGAGCCGAAGCCCCTAAAACAATTAGCAAGAGCAAAGCTC
* * * * *
98640988 CCAGCTGTAAAAAAAAGGATCACAGATGACGATCCGTATCCTCTAAAACAGTTAGCTCCCAG
66 CCAGCTGTAAAAAAAAGGATCACAGATGAAGAGCCGCAACCACTAAAACAGTTAGCTCCCAG
** * * *
98641050 CAATAAAAACAAGGTTTTGTAGGTGAAGAGCCGTAGCCCCTAAAACAGTTAGCAAGAGCAAAGCT
1 CAATAAAAACAAGG-TTTACAGGCGAAGAGCCGAAGCCCCTAAAACAATTAGCAAGAGCAAAGCT
* * * *
98641115 CCCAGCTGTAAAAACAAGGTTTACAGGTGAAGAGCCGCAACCACTAAAACAGTTAG
65 CCCAGCTGTAAAAAAAAGGATCACAGATGAAGAGCCGCAACCACTAAAACAGTTAG
98641171 TGAGAGCAAA
Statistics
Matches: 101, Mismatches: 19, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
127 14 0.14
128 87 0.86
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.18
Consensus pattern (127 bp):
CAATAAAAACAAGGTTTACAGGCGAAGAGCCGAAGCCCCTAAAACAATTAGCAAGAGCAAAGCTC
CCAGCTGTAAAAAAAAGGATCACAGATGAAGAGCCGCAACCACTAAAACAGTTAGCTCCCAG
Found at i:98641372 original size:207 final size:207
Alignment explanation
Indices: 98641070--98641532 Score: 491
Period size: 207 Copynumber: 2.2 Consensus size: 207
98641060 AAGGTTTTGT
** * * *
98641070 AGGTGAAGAGCCGTAGCCCCTAAAACAGTTAGCAAGAGCAAAGCTCCCAGCTGTAAAAACAAGGT
1 AGGTGAAGAGCCGTAGCCTTTAAAATAGTTAGCGAGAGCAAAGCTCCCAGCTGGAAAAACAAGGT
** ** *
98641135 TTACAGGTGAAGAGCCGCAACCACTAAAACAGTTAGTGAGAGCAAAGCTCCCAGTTGTAAAAAAA
66 TTACAGGCAAAGAGCCGCAACCACTAAAACAGTTAGCAAGAGCAAAGCTCCCAGCTGTAAAAAAA
* * * * * *
98641200 ATGTTCACAAACGAAGAGCCACAACCTCTAAAACAATTAGTAAGGGCAAAGCTCTCAGTTGTGAA
131 AGGTTCACAAACGAAAAGCCACAACCTCTAAAACAATTAGCAAGAGCAAAGCTCCCAGCTGT-AA
*
98641265 AAA-A-AGGTTCGC
195 AAACATA-GTTCAC
* * * * * *
98641277 AGGTGAAGAGCCGTAGGCTTTAAAATAGTTAGCGGGAGTAAAGCTCCTAGTTGGGAAAACAAGGT
1 AGGTGAAGAGCCGTAGCCTTTAAAATAGTTAGCGAGAGCAAAGCTCCCAGCTGGAAAAACAAGGT
* * ** * * *
98641342 TT-CTAGGCAAAGAGCTGCAGCCTTTAAAACAGTTAGCAAGAGCAAAGCTCTCAGCTGTGAAAAC
66 TTAC-AGGCAAAGAGCCGCAACCACTAAAACAGTTAGCAAGAGCAAAGCTCCCAGCTGTAAAAAA
* *** ** * *
98641406 AAGGTTCATAGGTGAAAAGCTGCAGCCTCTAAAACAATTAGCGAGAGCAAAGCTCCCAGCTGTAA
130 AAGGTTCACAAACGAAAAGCCACAACCTCTAAAACAATTAGCAAGAGCAAAGCTCCCAGCTGTAA
98641471 AAACATAGTTCAC
195 AAACATAGTTCAC
* * * * *
98641484 AGGAGAAGATCCATAGCCTTTAAAATAGATAGTGAGAGCAAAGCTCCCA
1 AGGTGAAGAGCCGTAGCCTTTAAAATAGTTAGCGAGAGCAAAGCTCCCA
98641533 ATTGTAAAAT
Statistics
Matches: 206, Mismatches: 47, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
206 6 0.03
207 199 0.97
208 1 0.00
ACGTcount: A:0.38, C:0.20, G:0.23, T:0.19
Consensus pattern (207 bp):
AGGTGAAGAGCCGTAGCCTTTAAAATAGTTAGCGAGAGCAAAGCTCCCAGCTGGAAAAACAAGGT
TTACAGGCAAAGAGCCGCAACCACTAAAACAGTTAGCAAGAGCAAAGCTCCCAGCTGTAAAAAAA
AGGTTCACAAACGAAAAGCCACAACCTCTAAAACAATTAGCAAGAGCAAAGCTCCCAGCTGTAAA
AACATAGTTCAC
Found at i:98641560 original size:19 final size:20
Alignment explanation
Indices: 98641522--98641560 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
98641512 ATAGTGAGAG
98641522 CAAAGCTCCCAATTGTAAAAT
1 CAAAGCTCCCAA-TGTAAAAT
*
98641543 CAAAGCTCGCAA-GTAAAA
1 CAAAGCTCCCAATGTAAAA
98641561 ATCTTCAGCC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
21 11 0.65
ACGTcount: A:0.46, C:0.23, G:0.13, T:0.18
Consensus pattern (20 bp):
CAAAGCTCCCAATGTAAAAT
Found at i:98648651 original size:31 final size:31
Alignment explanation
Indices: 98648616--98648674 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
98648606 GAAATAGGTC
*
98648616 GAAAACCACAATTA-CCCTAGTGGCATGGGTG
1 GAAAACCACAATTATCCC-AATGGCATGGGTG
*
98648647 GAAAACTACAATTATCCCAATGGCATGG
1 GAAAACCACAATTATCCCAATGGCATGG
98648675 ATAGAAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 22 0.88
32 3 0.12
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (31 bp):
GAAAACCACAATTATCCCAATGGCATGGGTG
Found at i:98648894 original size:14 final size:15
Alignment explanation
Indices: 98648871--98648904 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
98648861 ATTCAATATA
98648871 CAAAAACATATTTC-
1 CAAAAACATATTTCT
*
98648885 CAAAAGCATATTTCT
1 CAAAAACATATTTCT
98648900 CAAAA
1 CAAAA
98648905 CGAGTTCCAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.50, C:0.21, G:0.03, T:0.26
Consensus pattern (15 bp):
CAAAAACATATTTCT
Found at i:98650316 original size:29 final size:29
Alignment explanation
Indices: 98650012--98650349 Score: 153
Period size: 26 Copynumber: 12.3 Consensus size: 29
98650002 CCTGGTGGAC
* * * **
98650012 TTCCCCATATAAGATAGTCCTAACGGAC-
1 TTCCACATATCAGATAGTCCTCATAGACT
* ** *
98650040 TTCCACATA--AGATAGTCTTCACGGAAT
1 TTCCACATATCAGATAGTCCTCATAGACT
* * *
98650067 TTCCCCATACCAGATAGTCCTCATGGAC-
1 TTCCACATATCAGATAGTCCTCATAGACT
* ***
98650095 TTCCACATA--AGATAGTCTTGGCAGACTT
1 TTCCACATATCAGATAGTCCTCATAGAC-T
* * *
98650123 TTCC-CATATCAGATAGTCCTTACAGGC-
1 TTCCACATATCAGATAGTCCTCATAGACT
* * *
98650150 TT-C-TATATAAGATAGTCCTGATAGACT
1 TTCCACATATCAGATAGTCCTCATAGACT
**
98650177 TTCCACATATCAGGCAGTCCTCATAGACT
1 TTCCACATATCAGATAGTCCTCATAGACT
* ** *
98650206 TT-CACATA--AGATAGTCATGGTGGACT
1 TTCCACATATCAGATAGTCCTCATAGACT
* **
98650232 TTGTC-CATATCAGATAGTCCTCACGGAC-
1 TT-CCACATATCAGATAGTCCTCATAGACT
98650260 TTCCACATA--AGATAGTCCT-AGCTA-ACT
1 TTCCACATATCAGATAGTCCTCA--TAGACT
* *
98650287 TTCCACATATCAAATAGTCCTTATAGAC-
1 TTCCACATATCAGATAGTCCTCATAGACT
* * **
98650315 TTCCACATA--AGATTGTCTTGGTAGACT
1 TTCCACATATCAGATAGTCCTCATAGACT
98650342 TTCCACAT
1 TTCCACAT
98650350 TTAAGAATGT
Statistics
Matches: 240, Mismatches: 47, Indels: 47
0.72 0.14 0.14
Matches are distributed among these distances:
25 1 0.00
26 83 0.35
27 38 0.16
28 45 0.19
29 72 0.30
30 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (29 bp):
TTCCACATATCAGATAGTCCTCATAGACT
Found at i:98650362 original size:55 final size:55
Alignment explanation
Indices: 98649996--98650349 Score: 329
Period size: 55 Copynumber: 6.5 Consensus size: 55
98649986 TCCTCAAAAC
* * * * * **
98649996 GATAGTCCTGGTGGAC-TTCCCCATATAAGATAGTCCTAACGGACTTCCACATAA
1 GATAGTCTTGGTAGACTTTCCACATATCAGATAGTCCTCATAGACTTCCACATAA
**** * * * *
98650050 GATAGTCTTCACGGAATTTCCCCATACCAGATAGTCCTCATGGACTTCCACATAA
1 GATAGTCTTGGTAGACTTTCCACATATCAGATAGTCCTCATAGACTTCCACATAA
* * * * * *
98650105 GATAGTCTTGGCAGACTTTTCC-CATATCAGATAGTCCTTACAGGCTTCTATATAA
1 GATAGTCTTGGTAGAC-TTTCCACATATCAGATAGTCCTCATAGACTTCCACATAA
* * ** *
98650160 GATAGTCCTGATAGACTTTCCACATATCAGGCAGTCCTCATAGACTTTCACATAA
1 GATAGTCTTGGTAGACTTTCCACATATCAGATAGTCCTCATAGACTTCCACATAA
* * * **
98650215 GATAGTCATGGTGGACTTTGTC-CATATCAGATAGTCCTCACGGACTTCCACATAA
1 GATAGTCTTGGTAGACTTT-CCACATATCAGATAGTCCTCATAGACTTCCACATAA
* * * *
98650270 GATAGTCCTAGCTA-ACTTTCCACATATCAAATAGTCCTTATAGACTTCCACATAA
1 GATAGT-CTTGGTAGACTTTCCACATATCAGATAGTCCTCATAGACTTCCACATAA
*
98650325 GATTGTCTTGGTAGACTTTCCACAT
1 GATAGTCTTGGTAGACTTTCCACAT
98650350 TTAAGAATGT
Statistics
Matches: 241, Mismatches: 52, Indels: 13
0.79 0.17 0.04
Matches are distributed among these distances:
54 22 0.09
55 210 0.87
56 9 0.04
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (55 bp):
GATAGTCTTGGTAGACTTTCCACATATCAGATAGTCCTCATAGACTTCCACATAA
Found at i:98650362 original size:110 final size:109
Alignment explanation
Indices: 98649996--98650345 Score: 402
Period size: 110 Copynumber: 3.2 Consensus size: 109
98649986 TCCTCAAAAC
* * * * *
98649996 GATAGTCCTGGTGGACTTCCCCATATAAGATAGTCCTAACGGACTTCCACATAAGATAGTCTTCA
1 GATAGTCTTGGTAGACTTTCCCATATCAGATAGTCCTAACGGACTTCCACATAAGATAGTCCT-A
* * * *
98650061 -CGGAA-TTTCCCCATACCAGATAGTCCTCATGGACTTCCACATAA
65 GC-TAACTTTCCACATATCAGATAGTCCTCATAGACTTCCACATAA
* * * *
98650105 GATAGTCTTGGCAGACTTTTCCCATATCAGATAGTCCTTACAGG-CTTCTATATAAGATAGTCCT
1 GATAGTCTTGGTAGAC-TTTCCCATATCAGATAGTCCTAAC-GGACTTCCACATAAGATAGTCCT
* ** *
98650169 -GATAGACTTTCCACATATCAGGCAGTCCTCATAGACTTTCACATAA
64 AGCTA-ACTTTCCACATATCAGATAGTCCTCATAGACTTCCACATAA
* * * *
98650215 GATAGTCATGGTGGACTTTGTCCATATCAGATAGTCCTCACGGACTTCCACATAAGATAGTCCTA
1 GATAGTCTTGGTAGACTTT-CCCATATCAGATAGTCCTAACGGACTTCCACATAAGATAGTCCTA
* *
98650280 GCTAACTTTCCACATATCAAATAGTCCTTATAGACTTCCACATAA
65 GCTAACTTTCCACATATCAGATAGTCCTCATAGACTTCCACATAA
*
98650325 GATTGTCTTGGTAGACTTTCC
1 GATAGTCTTGGTAGACTTTCC
98650346 ACATTTAAGA
Statistics
Matches: 199, Mismatches: 34, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
108 1 0.01
109 20 0.10
110 173 0.87
111 5 0.03
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (109 bp):
GATAGTCTTGGTAGACTTTCCCATATCAGATAGTCCTAACGGACTTCCACATAAGATAGTCCTAG
CTAACTTTCCACATATCAGATAGTCCTCATAGACTTCCACATAA
Found at i:98650884 original size:75 final size:76
Alignment explanation
Indices: 98650760--98650907 Score: 226
Period size: 75 Copynumber: 2.0 Consensus size: 76
98650750 ATCACCATAT
* * * * * * *
98650760 ATCAAGGATTCTCCATAACATACTCATTTTTTGTAAGTTTATCACAAACTGCATGCAACATGGCA
1 ATCAAGGATTCTCCATAACAAACTAATCTTTTGTAAGCTTATCACAAACTACACGCAACATGACA
98650825 CCTTTACTTAC
66 CCTTTACTTAC
98650836 ATCAAGGATTCTCCATAACAAAC-AATCTTTTGTAAGCTTATCACAAACTACACGCAACATGACA
1 ATCAAGGATTCTCCATAACAAACTAATCTTTTGTAAGCTTATCACAAACTACACGCAACATGACA
98650900 CCTTTACT
66 CCTTTACT
98650908 CACAACCATA
Statistics
Matches: 65, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
75 43 0.66
76 22 0.34
ACGTcount: A:0.34, C:0.25, G:0.09, T:0.31
Consensus pattern (76 bp):
ATCAAGGATTCTCCATAACAAACTAATCTTTTGTAAGCTTATCACAAACTACACGCAACATGACA
CCTTTACTTAC
Found at i:98651652 original size:35 final size:35
Alignment explanation
Indices: 98651613--98651687 Score: 141
Period size: 35 Copynumber: 2.1 Consensus size: 35
98651603 CCCCCTTGCA
*
98651613 ACTTAAGACTTAATAAACCCAGGTGTGACATAGCC
1 ACTTAAGACTTAACAAACCCAGGTGTGACATAGCC
98651648 ACTTAAGACTTAACAAACCCAGGTGTGACATAGCC
1 ACTTAAGACTTAACAAACCCAGGTGTGACATAGCC
98651683 ACTTA
1 ACTTA
98651688 CTTGATTAAC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.37, C:0.24, G:0.16, T:0.23
Consensus pattern (35 bp):
ACTTAAGACTTAACAAACCCAGGTGTGACATAGCC
Found at i:98653662 original size:15 final size:15
Alignment explanation
Indices: 98653642--98653671 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
98653632 AAGTTTACTT
98653642 TCGATAACCAGTTTA
1 TCGATAACCAGTTTA
98653657 TCGATAACCAGTTTA
1 TCGATAACCAGTTTA
98653672 ATCCTATTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.33
Consensus pattern (15 bp):
TCGATAACCAGTTTA
Found at i:98654446 original size:19 final size:18
Alignment explanation
Indices: 98654420--98654459 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
98654410 TATAAATATA
98654420 TTTAATATTTT-TAAATTT
1 TTTAATATTTTCT-AATTT
98654438 TTTATATATTTTCTAATTT
1 TTTA-ATATTTTCTAATTT
98654457 TTT
1 TTT
98654460 TGGAACTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 4 0.20
19 15 0.75
20 1 0.05
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.70
Consensus pattern (18 bp):
TTTAATATTTTCTAATTT
Found at i:98654565 original size:17 final size:17
Alignment explanation
Indices: 98654543--98654576 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
98654533 TTTGCAATTT
98654543 CCATTCATGAATCTAAA
1 CCATTCATGAATCTAAA
98654560 CCATTCATGAATCTAAA
1 CCATTCATGAATCTAAA
98654577 TAATTTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.29
Consensus pattern (17 bp):
CCATTCATGAATCTAAA
Done.