Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 297 of 322
Found at i:98658087 original size:20 final size:19
Alignment explanation
Indices: 98658054--98658099 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
98658044 CTATTTAGCT
*
98658054 ATCAAGCTTAAAAAACTATC
1 ATCAAACTTAAAAAACT-TC
*
98658074 ATCAAACTTCAAAAACTTC
1 ATCAAACTTAAAAAACTTC
98658093 A-CAAACT
1 ATCAAACT
98658100 CAACAATGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 6 0.25
19 3 0.12
20 15 0.62
ACGTcount: A:0.50, C:0.24, G:0.02, T:0.24
Consensus pattern (19 bp):
ATCAAACTTAAAAAACTTC
Found at i:98661231 original size:46 final size:45
Alignment explanation
Indices: 98661164--98661255 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 45
98661154 AAAAAGAAGA
98661164 GAAAGAGCTTGGAGAAAATCGGCTATGGTGGTTCACTAGACTAAG
1 GAAAGAGCTTGGAGAAAATCGGCTATGGTGGTTCACTAGACTAAG
98661209 NGAAAGAGCTTGGAGAAAATCGGCTATGGTGGTTCACTAGACTAAG
1 -GAAAGAGCTTGGAGAAAATCGGCTATGGTGGTTCACTAGACTAAG
98661255 G
1 G
98661256 TATGTTGATG
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
45 1 0.02
46 45 0.98
ACGTcount: A:0.33, C:0.13, G:0.32, T:0.22
Consensus pattern (45 bp):
GAAAGAGCTTGGAGAAAATCGGCTATGGTGGTTCACTAGACTAAG
Found at i:98662476 original size:40 final size:40
Alignment explanation
Indices: 98662421--98662624 Score: 304
Period size: 40 Copynumber: 5.1 Consensus size: 40
98662411 CGGATGATAA
* *
98662421 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
98662461 CCGGGCTAAGTCCCGAAGGCATTTGTGCGGGTTACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
98662501 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
**
98662541 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* **
98662581 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
98662621 CCGG
1 CCGG
98662625 TTAAAGCCCG
Statistics
Matches: 152, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 151 0.99
41 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:98669258 original size:38 final size:38
Alignment explanation
Indices: 98669216--98669290 Score: 141
Period size: 38 Copynumber: 2.0 Consensus size: 38
98669206 CATGTTGTTC
98669216 AACTTGGCCGAATAGAAGAAAGAAAAAGAAGGGAAAGG
1 AACTTGGCCGAATAGAAGAAAGAAAAAGAAGGGAAAGG
*
98669254 AACTTGGCCGAATAGAAGAAAGAAAAAGAGGGGAAAG
1 AACTTGGCCGAATAGAAGAAAGAAAAAGAAGGGAAAG
98669291 AGCTTGGAGA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.52, C:0.08, G:0.32, T:0.08
Consensus pattern (38 bp):
AACTTGGCCGAATAGAAGAAAGAAAAAGAAGGGAAAGG
Found at i:98670551 original size:40 final size:40
Alignment explanation
Indices: 98670496--98670699 Score: 313
Period size: 40 Copynumber: 5.1 Consensus size: 40
98670486 CGGATGATAA
* *
98670496 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
98670536 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
98670576 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
**
98670616 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* **
98670656 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
98670696 CCGG
1 CCGG
98670700 TTAAAGCCCG
Statistics
Matches: 154, Mismatches: 9, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
40 153 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:98673213 original size:28 final size:28
Alignment explanation
Indices: 98673173--98673228 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
98673163 CCCAAGTTAG
*
98673173 AGAGTTACACGGGGTCAGACACGGGCTA
1 AGAGTTACACGGGGTCAGACACAGGCTA
98673201 AGAGTTACACGGGGTCAGACACAGGCTA
1 AGAGTTACACGGGGTCAGACACAGGCTA
98673229 GGACATAGCC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.34, T:0.14
Consensus pattern (28 bp):
AGAGTTACACGGGGTCAGACACAGGCTA
Found at i:98682472 original size:21 final size:20
Alignment explanation
Indices: 98682446--98682486 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 20
98682436 CGTCGATTAT
98682446 TATTAAAAATTATAAAATATA
1 TATTAAAAATTA-AAAATATA
98682467 TATTAAAAATTAAAAATATA
1 TATTAAAAATTAAAAATATA
98682487 CTAAAAATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
TATTAAAAATTAAAAATATA
Found at i:98682500 original size:20 final size:20
Alignment explanation
Indices: 98682449--98682501 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 20
98682439 CGATTATTAT
*
98682449 TAAAAATTATAAAATATATAT
1 TAAAAA-TATAAAATATATAC
98682470 TAAAAAT-TAAAA-ATATAC
1 TAAAAATATAAAATATATAC
98682488 TAAAAATCATAAAA
1 TAAAAAT-ATAAAA
98682502 CTTTAAGATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 12 0.41
19 5 0.17
20 6 0.21
21 6 0.21
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (20 bp):
TAAAAATATAAAATATATAC
Found at i:98687057 original size:7 final size:7
Alignment explanation
Indices: 98687045--98687070 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
98687035 GTTGGGAACA
98687045 AAAAGTT
1 AAAAGTT
98687052 AAAAGTT
1 AAAAGTT
98687059 AAAAGTT
1 AAAAGTT
98687066 AAAAG
1 AAAAG
98687071 AAGAGAAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.15, T:0.23
Consensus pattern (7 bp):
AAAAGTT
Found at i:98691365 original size:21 final size:21
Alignment explanation
Indices: 98691339--98691447 Score: 182
Period size: 21 Copynumber: 5.2 Consensus size: 21
98691329 GCGCTTTACT
98691339 TTCTGTTCAGCTCTTATGAGC
1 TTCTGTTCAGCTCTTATGAGC
* *
98691360 TTCTGTTAAGCTCTTATGAGT
1 TTCTGTTCAGCTCTTATGAGC
98691381 TTCTGTTCAGCTCTTATGAGC
1 TTCTGTTCAGCTCTTATGAGC
*
98691402 TTCTGTTCAGCTCTTATGACC
1 TTCTGTTCAGCTCTTATGAGC
*
98691423 TTCTGTTTAGCTCTTATGAGC
1 TTCTGTTCAGCTCTTATGAGC
98691444 TTCT
1 TTCT
98691448 ATTAACGATG
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 81 1.00
ACGTcount: A:0.15, C:0.22, G:0.17, T:0.46
Consensus pattern (21 bp):
TTCTGTTCAGCTCTTATGAGC
Found at i:98693633 original size:26 final size:26
Alignment explanation
Indices: 98693604--98693654 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
98693594 ACATGGCATG
98693604 ATATACACTTTACAAAACATATTCAC
1 ATATACACTTTACAAAACATATTCAC
98693630 ATATACACTTTACAAAACATATTCA
1 ATATACACTTTACAAAACATATTCA
98693655 TATACTTCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.47, C:0.22, G:0.00, T:0.31
Consensus pattern (26 bp):
ATATACACTTTACAAAACATATTCAC
Found at i:98694111 original size:43 final size:42
Alignment explanation
Indices: 98694056--98694213 Score: 203
Period size: 43 Copynumber: 3.7 Consensus size: 42
98694046 GAATCATACA
*
98694056 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAATAT-G
* *
98694099 ATGCC-ACTGTCCCAGACAGGGTCTTACACGAAATCAAATATG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAATCAAATATG
* *
98694141 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATCATAAGT-TG
1 ATGCCAACGTCCCAGACATGGTCTTACACGT-AATCA-AA-TATG
*
98694185 ATGCCAACGTCCCAGACGTGGTCTTACAC
1 ATGCCAACGTCCCAGACATGGTCTTACAC
98694214 AAAAACACAT
Statistics
Matches: 101, Mismatches: 9, Indels: 9
0.85 0.08 0.08
Matches are distributed among these distances:
42 29 0.29
43 41 0.41
44 30 0.30
45 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAATATG
Found at i:98704871 original size:42 final size:42
Alignment explanation
Indices: 98704806--98704922 Score: 148
Period size: 42 Copynumber: 2.8 Consensus size: 42
98704796 GAATCGTACA
* *
98704806 ATGCCAAC-GTCCCAGACGTGGTCTTACATGTAATCAAATTCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACATGTAATCAAATACG
* *
98704848 ATGCCACTGTCCCAGACAAGGTCTTACATGAAATCAAATACG
1 ATGCCACTGTCCCAGACATGGTCTTACATGTAATCAAATACG
* *
98704890 ATGCTGA-TGTCCCAGACATGGTCTTACACGTAA
1 ATGC-CACTGTCCCAGACATGGTCTTACATGTAA
98704923 ATCATAAGTT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
41 2 0.03
42 62 0.95
43 1 0.02
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.25
Consensus pattern (42 bp):
ATGCCACTGTCCCAGACATGGTCTTACATGTAATCAAATACG
Found at i:98708602 original size:42 final size:42
Alignment explanation
Indices: 98708500--98708654 Score: 163
Period size: 42 Copynumber: 3.7 Consensus size: 42
98708490 AGCTCGTAAA
* *
98708500 ATGCCAACGTCCCAAACGTGGTCTTACATGAAATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAATA-CG
* * * *
98708543 ATGCC-ACTATCCTAGACAG-GGTCTTATACGAAATCATATACG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAAATCAAATACG
* * *
98708585 ATGCCAATGTCCCAGACATGGTCTTACACATAAATCAAAT-CG
1 ATGCCAACGTCCCAGACGTGGTCTTACAC-GAAATCAAATACG
*
98708627 ATGCCAACGTGCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
98708655 TGATAACATA
Statistics
Matches: 91, Mismatches: 16, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
42 52 0.57
43 38 0.42
44 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAATACG
Found at i:98715343 original size:40 final size:39
Alignment explanation
Indices: 98715269--98715410 Score: 178
Period size: 40 Copynumber: 3.6 Consensus size: 39
98715259 AACCCAAGTA
* *
98715269 CCTTCGGGATTTAG-CCAGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCAGATATAGC-ACTAGCACAAATG
* *
98715308 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCAGATATAG-CACTAGCACAAATG
* *
98715348 CCTTCGGGACTTAGCCCAGATATAGAAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCAGATATAG-CACTAGCACAAATG
* *
98715388 CCTTCGAGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCAGATAT
98715411 CATCCGAATA
Statistics
Matches: 90, Mismatches: 11, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
39 12 0.13
40 77 0.86
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCAGATATAGCACTAGCACAAATG
Found at i:98724853 original size:150 final size:150
Alignment explanation
Indices: 98724582--98724881 Score: 591
Period size: 150 Copynumber: 2.0 Consensus size: 150
98724572 GGACAAATTT
98724582 GAGAGATTTGACCCTCGCACATCCTGATGTGAAAAAAAGGGTTAATGTTTTCGCTTTAAGCATTT
1 GAGAGATTTGACCCTCGCACATCCTGATGTGAAAAAAAGGGTTAATGTTTTCGCTTTAAGCATTT
98724647 ACGGATTAGTTATTTTCCCTAAGGCTTTGGGGCATATAGACGAGGCAGCCTTCGATTTATTTGAC
66 ACGGATTAGTTATTTTCCCTAAGGCTTTGGGGCATATAGACGAGGCAGCCTTCGATTTATTTGAC
98724712 CGACTTGATTAAAGTCACAC
131 CGACTTGATTAAAGTCACAC
98724732 GAGAGATTTGACCCTCGCACATCCTGATGTGAAAAAAAGGGTTAATGTTTTCGCTTTAAGCATTT
1 GAGAGATTTGACCCTCGCACATCCTGATGTGAAAAAAAGGGTTAATGTTTTCGCTTTAAGCATTT
*
98724797 ACGGATTAGTTATTTTCCCTAAGGCTTTGGGGCATATATACGAGGCAGCCTTCGATTTATTTGAC
66 ACGGATTAGTTATTTTCCCTAAGGCTTTGGGGCATATAGACGAGGCAGCCTTCGATTTATTTGAC
98724862 CGACTTGATTAAAGTCACAC
131 CGACTTGATTAAAGTCACAC
98724882 CCGTTCCCAC
Statistics
Matches: 149, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 149 1.00
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (150 bp):
GAGAGATTTGACCCTCGCACATCCTGATGTGAAAAAAAGGGTTAATGTTTTCGCTTTAAGCATTT
ACGGATTAGTTATTTTCCCTAAGGCTTTGGGGCATATAGACGAGGCAGCCTTCGATTTATTTGAC
CGACTTGATTAAAGTCACAC
Found at i:98735715 original size:53 final size:53
Alignment explanation
Indices: 98735643--98735748 Score: 167
Period size: 53 Copynumber: 2.0 Consensus size: 53
98735633 TGCTCCGTAG
* *
98735643 ATATCAGTCTGATCCTTCACATGTGATTAGATCATCTAAGATTGATATTAAGC
1 ATATCAGTCTGATCCTTCACATGTGATTAGATCATCTAAGATCGAGATTAAGC
* * *
98735696 ATATCGGTTTGATTCTTCACATGTGATTAGATCATCTAAGATCGAGATTAAGC
1 ATATCAGTCTGATCCTTCACATGTGATTAGATCATCTAAGATCGAGATTAAGC
98735749 CCAATATGAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (53 bp):
ATATCAGTCTGATCCTTCACATGTGATTAGATCATCTAAGATCGAGATTAAGC
Found at i:98739957 original size:44 final size:44
Alignment explanation
Indices: 98739890--98740439 Score: 324
Period size: 44 Copynumber: 12.0 Consensus size: 44
98739880 CCTGGCGAAT
*
98739890 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAAC
* * * *
98739934 CTTATCTCCCTGAAGTTGTAGTGGAGTAG-GTAGAAGCTAGC-AAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTA-AAGCTA-CAAAC
* *
98739978 CTTATTTCCCT-AAGGTTGCAGTGGAACAGATTAAAGCTATCAAAGTACAAAC
1 CTTATCTCCCTGAA-GTTGCAGTGGAGCAGATTAAAG----C----TACAAAC
* * * * * *
98740030 CTTATCTCCCTAAAGTTGCAGTGGAGTAAATCGAAGATAGGCTACCAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGAT--TA-A-A-GCTACAAAC
** * *
98740079 CTTATCTCCCTGAAGTTGCAGTGGATAAAATTAAAGCTACTAATC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAC-AAAC
* *
98740124 C-TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGCGACAAATC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAA-C
* * * * *
98740168 C-TATAC-CTCTGAAGTTGTAGTAGGTCAGATTAAATCTACCATAACTACAAAC
1 CTTAT-CTCCCTGAAGTTGCAGT-GG--AG--CAGAT-TA--A-AGCTACAAAC
* * * * * * *
98740220 CTTATCTCCTTGAAGTTGC-GATAGGAGCAGGTTGAAGTTATAGAT
1 CTTATCTCCCTGAAGTTGCAG-T-GGAGCAGATTAAAGCTACAAAC
* * * * *
98740265 CTTATCTCCCTGAAGTTGCAATGGAGTAGATCAAAGATAGCAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA-CAAAC
* * * * *
98740310 CTTATCTCTCTGAAGTTGTAGTAGAGCAGATTAAAACTATAAATC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAA-C
* * * * **
98740355 C-TATTTCCTTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAAC
*
98740398 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCGACAA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAA
98740440 GTTGCAAATC
Statistics
Matches: 383, Mismatches: 85, Indels: 76
0.70 0.16 0.14
Matches are distributed among these distances:
43 7 0.02
44 196 0.51
45 68 0.18
46 2 0.01
47 3 0.01
48 2 0.01
49 37 0.10
50 2 0.01
51 3 0.01
52 33 0.09
53 26 0.07
54 1 0.00
55 1 0.00
56 1 0.00
57 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAAC
Found at i:98740114 original size:101 final size:96
Alignment explanation
Indices: 98739928--98740117 Score: 240
Period size: 101 Copynumber: 1.9 Consensus size: 96
98739918 GATTAAAGCC
* * * * * *
98739928 ACAAACCTTATCTCCCTGAAGTTGTAGTGGAGTAGGTAGAAGCTAGCAATCTTATTTCCCTAAGG
1 ACAAACCTTATCTCCCTAAAGTTGCAGTGGAGTACGAAGAAGCTACCAATCTTATCTCCCTAAGG
*
98739993 TTGCAGTGGAACAGATTAAAGCTATCAAAGT
66 TTGCAGTGGAACAAATTAAAGCTATCAAAGT
98740024 ACAAACCTTATCTCCCTAAAGTTGCAGTGGAGTAAATCGAAGATAGGCTACCAATCTTATCTCCC
1 ACAAACCTTATCTCCCTAAAGTTGCAGTGGAGT--A-CGAAGA-A-GCTACCAATCTTATCTCCC
98740089 TGAA-GTTGCAGTGGATA-AAATTAAAGCTA
61 T-AAGGTTGCAGTGGA-ACAAATTAAAGCTA
98740118 CTAATCCTAT
Statistics
Matches: 80, Mismatches: 7, Indels: 9
0.83 0.07 0.09
Matches are distributed among these distances:
96 31 0.39
98 1 0.01
99 4 0.05
100 1 0.01
101 40 0.50
102 3 0.04
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (96 bp):
ACAAACCTTATCTCCCTAAAGTTGCAGTGGAGTACGAAGAAGCTACCAATCTTATCTCCCTAAGG
TTGCAGTGGAACAAATTAAAGCTATCAAAGT
Found at i:98740463 original size:51 final size:51
Alignment explanation
Indices: 98740387--98740483 Score: 149
Period size: 51 Copynumber: 1.9 Consensus size: 51
98740377 GAGCAGATTG
* *
98740387 AAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCGAC
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCGAC
* * *
98740438 AAGTTGCAAATCTTATCTCCCTGAAGTTGTAGTAGAGCGGATTAAA
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAA
98740484 ACGATAAATC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 41 1.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.28
Consensus pattern (51 bp):
AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCGAC
Found at i:98740491 original size:139 final size:134
Alignment explanation
Indices: 98740226--98740493 Score: 362
Period size: 133 Copynumber: 2.0 Consensus size: 134
98740216 AAACCTTATC
* *
98740226 TCCTTGAAGTTGCGATAGGAGCAGGTTGAAGTTATAGATCTTATCTCCCTGAAGTTGCAATGGAG
1 TCCTTGAAGTTGCGATAGGAGCAGATTGAAGTTAAAGATCTTATCTCCCTGAAGTTGCAATGGAG
* * *
98740291 TAGATCAAAGATAGCAAATCTTATCTCTCTGAAGTTGTAGTAGAGCAGATTAAAACTATAAATCC
66 CAGATCAAAGATAGCAAATCTTATCTCCCTGAAGTTGTAGTAGAGCAGATTAAAACGATAAATCC
98740356 TATT
131 TATT
*
98740360 TCCTTGAAGTTGC-AGT-GGAGCAGATTGAAGTTACAAG-TCTTATCTCCCTGAAGTTGCAGTGG
1 TCCTTGAAGTTGCGA-TAGGAGCAGATTGAAGTTA-AAGATCTTATCTCCCTGAAGTTGCAATGG
* * *
98740422 AGCAGATTAAAGCGACAAGTTGCAAATCTTATCTCCCTGAAGTTGTAGTAGAGCGGATTAAAACG
64 AGCAGATCAAA--G---A-TAGCAAATCTTATCTCCCTGAAGTTGTAGTAGAGCAGATTAAAACG
98740487 ATAAATC
123 ATAAATC
98740494 TTATACCTTT
Statistics
Matches: 117, Mismatches: 9, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
133 50 0.43
134 16 0.14
135 1 0.01
138 1 0.01
139 49 0.42
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.29
Consensus pattern (134 bp):
TCCTTGAAGTTGCGATAGGAGCAGATTGAAGTTAAAGATCTTATCTCCCTGAAGTTGCAATGGAG
CAGATCAAAGATAGCAAATCTTATCTCCCTGAAGTTGTAGTAGAGCAGATTAAAACGATAAATCC
TATT
Found at i:98740506 original size:139 final size:134
Alignment explanation
Indices: 98740227--98740509 Score: 358
Period size: 139 Copynumber: 2.1 Consensus size: 134
98740217 AACCTTATCT
* * *
98740227 CCTTGAAGTTGCGATAGGAGCAGGTTGAAGTTATAGATCTTATCTCCCTGAAGTTGCAATGGAGT
1 CCTTGAAGTTGCGATAGGAGCAGATTGAAGTTAAAGATCTTATCTCCCTGAAGTTGCAATGGAGC
* *
98740292 AGATCAAAGATAGCAAATCTTATCTCTCTGAAGTTGTAGTAGAGCAGATTAAAACTATAAATCCT
66 AGATCAAAGATAGCAAATCTTATCTCCCTGAAGTTGTAGTAGAGCAGATTAAAACGATAAATCCT
*
98740357 ATTT
131 ATTA
*
98740361 CCTTGAAGTTGC-AGT-GGAGCAGATTGAAGTTACAAG-TCTTATCTCCCTGAAGTTGCAGTGGA
1 CCTTGAAGTTGCGA-TAGGAGCAGATTGAAGTTA-AAGATCTTATCTCCCTGAAGTTGCAATGGA
* * *
98740423 GCAGATTAAAGCGACAAGTTGCAAATCTTATCTCCCTGAAGTTGTAGTAGAGCGGATTAAAACGA
64 GCAGATCAAA--G---A-TAGCAAATCTTATCTCCCTGAAGTTGTAGTAGAGCAGATTAAAACGA
*
98740488 TAAATCTTA-TA
123 TAAATCCTATTA
98740499 CCTTTGAAGTT
1 CC-TTGAAGTT
98740510 ACAAGTAGGT
Statistics
Matches: 129, Mismatches: 11, Indels: 13
0.84 0.07 0.08
Matches are distributed among these distances:
133 50 0.39
134 15 0.12
135 1 0.01
138 4 0.03
139 59 0.46
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (134 bp):
CCTTGAAGTTGCGATAGGAGCAGATTGAAGTTAAAGATCTTATCTCCCTGAAGTTGCAATGGAGC
AGATCAAAGATAGCAAATCTTATCTCCCTGAAGTTGTAGTAGAGCAGATTAAAACGATAAATCCT
ATTA
Found at i:98742477 original size:17 final size:16
Alignment explanation
Indices: 98742451--98742482 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
98742441 GTCTTATTGT
98742451 TTTTTATATTTTTATA
1 TTTTTATATTTTTATA
98742467 TTTTTATTATTTTTAT
1 TTTTTA-TATTTTTAT
98742483 TTAGTTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTTATATTTTTATA
Found at i:98742483 original size:9 final size:8
Alignment explanation
Indices: 98742451--98742482 Score: 55
Period size: 8 Copynumber: 3.9 Consensus size: 8
98742441 GTCTTATTGT
98742451 TTTTTATA
1 TTTTTATA
98742459 TTTTTATA
1 TTTTTATA
98742467 TTTTTATTA
1 TTTTTA-TA
98742476 TTTTTAT
1 TTTTTAT
98742483 TTAGTTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 15 0.65
9 8 0.35
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (8 bp):
TTTTTATA
Found at i:98746424 original size:40 final size:40
Alignment explanation
Indices: 98746379--98746568 Score: 256
Period size: 40 Copynumber: 4.8 Consensus size: 40
98746369 ATAACCACAA
* * *
98746379 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * * *
98746419 GCACAAATGCCTTCGGGTCTTAGCCCGGAAAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGG-ATATAGCAACTC
* * *
98746459 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* *
98746499 GCACAAATGCCTTCAGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
98746539 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
98746569 GTATTCAAAT
Statistics
Matches: 128, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 3 0.02
40 122 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:98746464 original size:80 final size:80
Alignment explanation
Indices: 98746378--98746566 Score: 308
Period size: 80 Copynumber: 2.4 Consensus size: 80
98746368 TATAACCACA
*
98746378 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTTCAGGTCTTAGC
98746443 CCGGAAAAAATC-ACT
66 CCGG-AAAAATCAACT
98746458 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTTCAGGTCTTAGC
1 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTTCAGGTCTTAGC
* *
98746523 CCGGATATATCAACT
66 CCGGAAAAATCAACT
* * *
98746538 CGCACAAATGCCTTCGGGTCTTAGCCCGG
1 AGCACAATTGCCTTCGGGTCTTAACCCGG
98746567 ATGTATTCAA
Statistics
Matches: 102, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
79 5 0.05
80 97 0.95
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (80 bp):
AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTTCAGGTCTTAGC
CCGGAAAAATCAACT
Found at i:98749827 original size:3 final size:3
Alignment explanation
Indices: 98749819--98749844 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
98749809 ATCACATGTT
98749819 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
98749845 TGGATGTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:98749964 original size:73 final size:73
Alignment explanation
Indices: 98749845--98750103 Score: 509
Period size: 73 Copynumber: 3.5 Consensus size: 73
98749835 TATTATTATT
*
98749845 TGGATGTAATGATGTAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
98749910 ATTTTAAG
66 ATTTTAAG
98749918 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
98749983 ATTTTAAG
66 ATTTTAAG
98749991 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
98750056 ATTTTAAG
66 ATTTTAAG
98750064 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
98750104 GTCAAGTTGT
Statistics
Matches: 185, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 185 1.00
ACGTcount: A:0.28, C:0.06, G:0.25, T:0.41
Consensus pattern (73 bp):
TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
ATTTTAAG
Found at i:98754328 original size:3 final size:3
Alignment explanation
Indices: 98754320--98754375 Score: 96
Period size: 3 Copynumber: 18.7 Consensus size: 3
98754310 ATCACATGTT
98754320 TTA TTA TTA TTA TTA TTA TT- TGTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA
98754365 TTA TTA TTA TT
1 TTA TTA TTA TT
98754376 TGGATGTAAT
Statistics
Matches: 51, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
2 1 0.02
3 49 0.96
4 1 0.02
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:98754458 original size:73 final size:73
Alignment explanation
Indices: 98754376--98754634 Score: 509
Period size: 73 Copynumber: 3.5 Consensus size: 73
98754366 TATTATTATT
*
98754376 TGGATGTAATGATGTAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
98754441 ATTTTAAG
66 ATTTTAAG
98754449 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
98754514 ATTTTAAG
66 ATTTTAAG
98754522 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
98754587 ATTTTAAG
66 ATTTTAAG
98754595 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
98754635 GTCAAGTTGT
Statistics
Matches: 185, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 185 1.00
ACGTcount: A:0.28, C:0.06, G:0.25, T:0.41
Consensus pattern (73 bp):
TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
ATTTTAAG
Found at i:98757355 original size:29 final size:29
Alignment explanation
Indices: 98757268--98757384 Score: 112
Period size: 29 Copynumber: 4.1 Consensus size: 29
98757258 ACCCCTACAT
* *
98757268 ACATGCATATGGCCCA-CTTGGCCC-AATC
1 ACATTCATATGGCCCATC-AGGCCCAAATC
* * * * *
98757296 TCATTTATATGGCCCATCAGGTCGAATTC
1 ACATTCATATGGCCCATCAGGCCCAAATC
98757325 ACATTCATATGGCCCATCAGGCCCAAATC
1 ACATTCATATGGCCCATCAGGCCCAAATC
* * * *
98757354 ACCTTTATATGGCCCGTTAGGCCCAAATC
1 ACATTCATATGGCCCATCAGGCCCAAATC
98757383 AC
1 AC
98757385 CTTATATTCA
Statistics
Matches: 71, Mismatches: 16, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
28 16 0.23
29 55 0.77
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATCAGGCCCAAATC
Found at i:98759626 original size:37 final size:37
Alignment explanation
Indices: 98759580--98759654 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
98759570 CAATAATAAA
*
98759580 AAAGAAAACTTAAATAAATGAAATAAATAAGACGTTG
1 AAAGAAAACTTAAATAAATGAAATAAATAAGACATTG
98759617 AAAGAAAACTTAAATAAATGAAATAAATAAGACATTG
1 AAAGAAAACTTAAATAAATGAAATAAATAAGACATTG
98759654 A
1 A
98759655 CATGATGATG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.61, C:0.05, G:0.12, T:0.21
Consensus pattern (37 bp):
AAAGAAAACTTAAATAAATGAAATAAATAAGACATTG
Found at i:98759664 original size:3 final size:3
Alignment explanation
Indices: 98759656--98759692 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
98759646 AGACATTGAC
98759656 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
98759693 CAATAATACA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.35, C:0.00, G:0.32, T:0.32
Consensus pattern (3 bp):
ATG
Found at i:98760411 original size:21 final size:20
Alignment explanation
Indices: 98760362--98760422 Score: 61
Period size: 21 Copynumber: 3.0 Consensus size: 20
98760352 GCCAAATTTT
*
98760362 TTTTTTTTACAAAATCAAAA
1 TTTTTTTTAAAAAATCAAAA
* *
98760382 TTTTCTTTTAAAAAATCACTAC
1 TTTT-TTTTAAAAAATCA-AAA
*
98760404 TTTTTTTT-ATAAATCAAAA
1 TTTTTTTTAAAAAATCAAAA
98760423 CTTTATATCA
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
19 1 0.03
20 11 0.33
21 16 0.48
22 5 0.15
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.48
Consensus pattern (20 bp):
TTTTTTTTAAAAAATCAAAA
Found at i:98760425 original size:20 final size:20
Alignment explanation
Indices: 98760362--98760426 Score: 69
Period size: 20 Copynumber: 3.1 Consensus size: 20
98760352 GCCAAATTTT
98760362 TTTTTTTTACAAAATCAAAA-
1 TTTTTTTTA-AAAATCAAAAC
**
98760382 TTTTCTTTTAAAAAATCACTAC
1 TTTT-TTTT-AAAAATCAAAAC
*
98760404 TTTTTTTTATAAATCAAAAC
1 TTTTTTTTAAAAATCAAAAC
98760424 TTT
1 TTT
98760427 ATATCAAAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
20 16 0.43
21 16 0.43
22 5 0.14
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.49
Consensus pattern (20 bp):
TTTTTTTTAAAAATCAAAAC
Found at i:98760688 original size:146 final size:145
Alignment explanation
Indices: 98760360--98760702 Score: 376
Period size: 146 Copynumber: 2.4 Consensus size: 145
98760350 TGGCCAAATT
* * * * *
98760360 TTTTTTTTTTACAAAATCAAAA-TTT-TC---TTTTAAAAAATCACTACTTTTTTTTATAAATCA
1 TTTTTATTTTA-AAAATCAAAACTTTCTCTTTTTTTAAAAAATCAATACTTTTTCTGAAAAATCA
* * *
98760420 AAACTTTATATCAAAATAGTTGAAAAAGATCTAAACTTTATTTTAAAAAATTTGAACTTTTCCTT
65 AAACTTTATATCAAAATAGTTGAAAAAGATCAAAACTTTATTTTAAAAAATTTAAACATTTCCTT
*
98760485 TAGACCAAATAACATA
130 TAGACCAAAAAACATA
*
98760501 TTTTTATTTTAATAATCAAAACTTTCTCTTTTTTTAAAAAAAATCAATA-TTTTTCTGAAAAATC
1 TTTTTATTTTAAAAATCAAAACTTTCTCTTTTTTT--AAAAAATCAATACTTTTTCTGAAAAATC
* * * * *
98760565 AAAACTTTATTTCGAAATAGTTGAAAAAGATCAAAATTTTGTTTT-AAGAATTTAAACATTTCCT
64 AAAACTTTATATCAAAATAGTTGAAAAAGATCAAAACTTTATTTTAAAAAATTTAAACATTTCC-
** *
98760629 TTAATATGATTAAAAAATATA
128 TT--TA-GACCAAAAAACATA
* * *
98760650 TTTTTATTTTAAAAATCTAAACTTTCTCTTTTTTAAAAAAAATCAAAACTTTT
1 TTTTTATTTTAAAAATCAAAACTTTCTCTTTTTT-TAAAAAATCAATACTTTT
98760703 CCCAAGATCA
Statistics
Matches: 167, Mismatches: 22, Indels: 18
0.81 0.11 0.09
Matches are distributed among these distances:
140 9 0.05
141 13 0.08
142 2 0.01
145 19 0.11
146 54 0.32
147 11 0.07
148 13 0.08
149 46 0.28
ACGTcount: A:0.42, C:0.10, G:0.04, T:0.44
Consensus pattern (145 bp):
TTTTTATTTTAAAAATCAAAACTTTCTCTTTTTTTAAAAAATCAATACTTTTTCTGAAAAATCAA
AACTTTATATCAAAATAGTTGAAAAAGATCAAAACTTTATTTTAAAAAATTTAAACATTTCCTTT
AGACCAAAAAACATA
Found at i:98761029 original size:22 final size:22
Alignment explanation
Indices: 98760996--98761043 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
98760986 TAATCTTATT
*
98760996 TATTTATAAAAAAGATAATAATAA
1 TATTTA-AAAATA-ATAATAATAA
98761020 TATTTAAAAATAATAATAATAA
1 TATTTAAAAATAATAATAATAA
98761042 TA
1 TA
98761044 AAATAATTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 12 0.52
23 5 0.22
24 6 0.26
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.35
Consensus pattern (22 bp):
TATTTAAAAATAATAATAATAA
Found at i:98762800 original size:138 final size:138
Alignment explanation
Indices: 98762552--98762828 Score: 545
Period size: 138 Copynumber: 2.0 Consensus size: 138
98762542 TATGTGTACA
*
98762552 TGCACGTGCGAAAGTTTCATGTTTTAGTTTTATCATTTGTATGTGAAATAGATTAAATAGGACTC
1 TGCACGTGCGAAAGTTTCATGTTTTAATTTTATCATTTGTATGTGAAATAGATTAAATAGGACTC
98762617 ATGTGAAATAAATGTGAAAGATGATAGGTTAAACTCAAAGTGGTGTAATAATGCATGTTAGAAAA
66 ATGTGAAATAAATGTGAAAGATGATAGGTTAAACTCAAAGTGGTGTAATAATGCATGTTAGAAAA
98762682 AGGATGGG
131 AGGATGGG
98762690 TGCACGTGCGAAAGTTTCATGTTTTAATTTTATCATTTGTATGTGAAATAGATTAAATAGGACTC
1 TGCACGTGCGAAAGTTTCATGTTTTAATTTTATCATTTGTATGTGAAATAGATTAAATAGGACTC
98762755 ATGTGAAATAAATGTGAAAGATGATAGGTTAAACTCAAAGTGGTGTAATAATGCATGTTAGAAAA
66 ATGTGAAATAAATGTGAAAGATGATAGGTTAAACTCAAAGTGGTGTAATAATGCATGTTAGAAAA
98762820 AGGATGGG
131 AGGATGGG
98762828 T
1 T
98762829 TTGCATGTCA
Statistics
Matches: 138, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
138 138 1.00
ACGTcount: A:0.36, C:0.07, G:0.23, T:0.33
Consensus pattern (138 bp):
TGCACGTGCGAAAGTTTCATGTTTTAATTTTATCATTTGTATGTGAAATAGATTAAATAGGACTC
ATGTGAAATAAATGTGAAAGATGATAGGTTAAACTCAAAGTGGTGTAATAATGCATGTTAGAAAA
AGGATGGG
Found at i:98764246 original size:40 final size:40
Alignment explanation
Indices: 98764192--98764496 Score: 493
Period size: 40 Copynumber: 7.6 Consensus size: 40
98764182 CAATCGAGGA
* * * *
98764192 TTATATCCAGGTTAAGTCCCGAAGGCATTCATGCTGGTTA
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
98764232 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
98764272 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
*
98764312 TTATTTCCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
98764352 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
*
98764392 TTATTTCCGGGTTAAGTCCCGAAGGCATTCATGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* * *
98764432 CTATTTTCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
** * *
98764472 TTACATCCGGGCTAAATCCCGAAGG
1 TTATTTCCGGGTTAAGTCCCGAAGG
98764497 TAATTGGGTT
Statistics
Matches: 248, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 248 1.00
ACGTcount: A:0.18, C:0.20, G:0.28, T:0.34
Consensus pattern (40 bp):
TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
Found at i:98766136 original size:14 final size:15
Alignment explanation
Indices: 98766117--98766149 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
98766107 TACAAGAAAC
98766117 AAAAATAAAATA-AT
1 AAAAATAAAATATAT
*
98766131 AAAAATCAAATATAT
1 AAAAATAAAATATAT
98766146 AAAA
1 AAAA
98766150 TAATAATGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (15 bp):
AAAAATAAAATATAT
Found at i:98769175 original size:29 final size:29
Alignment explanation
Indices: 98769088--98769180 Score: 132
Period size: 29 Copynumber: 3.2 Consensus size: 29
98769078 GTATCAACGC
*
98769088 CCATCGAATATGAAAAGAGATGGTGAAGA
1 CCATCGAATATGAAAAGAGATGGTGACGA
* *
98769117 CCATGGAATATGAAAAGGGATGGTGACGA
1 CCATCGAATATGAAAAGAGATGGTGACGA
* **
98769146 CCATTGAATATGAAAAGAGATGGTTTCGA
1 CCATCGAATATGAAAAGAGATGGTGACGA
98769175 CCATCG
1 CCATCG
98769181 TTTAGTATAC
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 56 1.00
ACGTcount: A:0.39, C:0.13, G:0.28, T:0.20
Consensus pattern (29 bp):
CCATCGAATATGAAAAGAGATGGTGACGA
Found at i:98773582 original size:12 final size:12
Alignment explanation
Indices: 98773567--98773596 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
98773557 AATTATTCAC
98773567 ATATTTATATAT
1 ATATTTATATAT
98773579 ATATTTATATAT
1 ATATTTATATAT
98773591 ATATTT
1 ATATTT
98773597 GTTGTTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
ATATTTATATAT
Found at i:98776238 original size:40 final size:40
Alignment explanation
Indices: 98776181--98776444 Score: 356
Period size: 40 Copynumber: 6.7 Consensus size: 40
98776171 CTAACGGGGT
* * * *
98776181 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
98776221 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAA-ACCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
98776260 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
98776300 TAAGCCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
98776340 TAAGCCCCGAAGGCATTTGTGCGAGTTACTACA-TCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGC
* * * *
98776380 TAAGTCCCAAAGGCATTTGTGCTAGTGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * *
98776420 TAAGACCCGACGGC-CTTGTGCGAGT
1 TAAGTCCCGAAGGCATTTGTGCGAGT
98776445 GGTTATATCC
Statistics
Matches: 203, Mismatches: 17, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
38 1 0.00
39 47 0.23
40 154 0.76
41 1 0.00
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:98778096 original size:130 final size:131
Alignment explanation
Indices: 98777944--98778187 Score: 355
Period size: 131 Copynumber: 1.9 Consensus size: 131
98777934 AAAATTCTCT
* **
98777944 AAAACGAAGGCAATACTCGATGTTTGGAAATTC-GAGAATCGTACCCTATCGTGCTGGGTTGCAA
1 AAAACAAAGGCAATACAAGATGTTTGGAAATTCGGAGAATCGTACCCTATCGTGCTGGGTTGCAA
* *
98778008 TTTCCCATTTGTTCAAAACAATCAAATATTCCTTTGGAATTTCGCTCATATCTTTAAAAACCTTT
66 TTTCCCATTTGTTCAAAACAATCAAATATTCCTTTAGAATTTCACTCATATCTTTAAAAACCTTT
98778073 C
131 C
* * * * *
98778074 AAAACAAAGGTAATACAAGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCGA
1 AAAACAAAGGCAATACAAGATGTTTGGAAATTCGGAGAATCGTACCCTATCGTGCTGGGTTGCAA
** * *
98778139 TTTCCTGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCAT
66 TTTCCCATTTGTTCAAAACAATCAAATATTCCTTTAGAATTTCACTCAT
98778188 GATTCTCTAA
Statistics
Matches: 99, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
130 28 0.28
131 71 0.72
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (131 bp):
AAAACAAAGGCAATACAAGATGTTTGGAAATTCGGAGAATCGTACCCTATCGTGCTGGGTTGCAA
TTTCCCATTTGTTCAAAACAATCAAATATTCCTTTAGAATTTCACTCATATCTTTAAAAACCTTT
C
Found at i:98785776 original size:21 final size:23
Alignment explanation
Indices: 98785722--98785776 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
98785712 ATGATGCTAG
*
98785722 ATGTTAGAATTGGCTTGGTTATA
1 ATGTTTGAATTGGCTTGGTTATA
98785745 ATGTTTGAATTGGC-TGG-TAT-
1 ATGTTTGAATTGGCTTGGTTATA
98785765 ATGTTTGCAATT
1 ATGTTTG-AATT
98785777 ATTGGTATAG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 7 0.23
21 7 0.23
22 3 0.10
23 13 0.43
ACGTcount: A:0.24, C:0.05, G:0.25, T:0.45
Consensus pattern (23 bp):
ATGTTTGAATTGGCTTGGTTATA
Found at i:98789125 original size:206 final size:207
Alignment explanation
Indices: 98788489--98789723 Score: 1499
Period size: 206 Copynumber: 6.0 Consensus size: 207
98788479 GAATCCTTTC
* * * *
98788489 GAATTGAAAACATAGTTGTTTTGGATACTAAAGTATCTAAGTCTAAGATTCAGTCAGTGCC-GAT
1 GAATTGAAAGCATAGTTGTTTTGGATACTAAAGTATCTGAGTCGAAGATTCAGTCAGTGCCTGGT
* * *
98788553 TATTTGTGAATTTCTTAATGCATTTCCAGAAGAATTACTTGGTTTACCACCAGTTAGAGAAGTGG
66 TGTTTGTGAATTTCCTAATGTATTTCCAGAAGAATTACTTGGTTTACCACCAGTTAGAGAAGTGG
* ** * * * * * *
98788618 AGTTCTCTATAAACCTTGTTCCGAGGACAACAGTGATATCCATAACACCTTATAGACTAGCTTCT
131 AGTTCTCTATAGACCTTGTTCCGAGGACAACACCGATATCCATAGCACCCTACAGAATGGCTCCT
98788683 ACCGAATTGAAA
196 ACCGAATTGAAA
** *
98788695 GAATTGAAAGCACGGTTGTTTTGGATACTAAAGTATCTGAGTCGAAGATTTAGTCAGTG-CTGGT
1 GAATTGAAAGCATAGTTGTTTTGGATACTAAAGTATCTGAGTCGAAGATTCAGTCAGTGCCTGGT
* *
98788759 TGTTTGTGAATTTCCTAATGTATTT-CTGAAAAATTA-TCTGGTTTACCACCAGTTAGAGAAGTG
66 TGTTTGTGAATTTCCTAATGTATTTCCAGAAGAATTACT-TGGTTTACCACCAGTTAGAGAAGTG
* * * * *
98788822 AAGTTTTCTATAGACCTTGTTCCGGGGACAACACCGATATCTATAGCAACCTACAGAATGGCTCC
130 GAGTTCTCTATAGACCTTGTTCCGAGGACAACACCGATATCCATAGCACCCTACAGAATGGCTCC
*
98788887 TCCCGAATTGAAA
195 TACCGAATTGAAA
* * * * *
98788900 TAATTGAAAGCACAGTTGTTTTGGATACTAAAGTATCTGAGCCGAAGATTCAGTCATTGTC-GGT
1 GAATTGAAAGCATAGTTGTTTTGGATACTAAAGTATCTGAGTCGAAGATTCAGTCAGTGCCTGGT
* * * * * *
98788964 TGTTTGTAAATTTCCTGATGTATTTCCGGAAGAATTACTTGATTTGCCACTAGTTAGAGAAGTGG
66 TGTTTGTGAATTTCCTAATGTATTTCCAGAAGAATTACTTGGTTTACCACCAGTTAGAGAAGTGG
* * *
98789029 AGTTCTCTATAGACCTTGTTTCGAGGACAACATCGATA-CTTATAGCACCCTACAGAATGGAC-C
131 AGTTCTCTATAGACCTTGTTCCGAGGACAACACCGATATC-CATAGCACCCTACAGAATGG-CTC
*
98789092 CTACAGAATTGAAA
194 CTACCGAATTGAAA
* * * *
98789106 GAATTGGAAGCATAGTTGTTTTGGATACTAAAGTATCTGAGTCAAAAATTCAGTCAGTGCC-AGT
1 GAATTGAAAGCATAGTTGTTTTGGATACTAAAGTATCTGAGTCGAAGATTCAGTCAGTGCCTGGT
* * * * * *
98789170 TGTTTGTGAATTTCTTGATGTATTTCCGGAAGAATTACCTGGTTTGCCACCAGTTAGAGAAGTAG
66 TGTTTGTGAATTTCCTAATGTATTTCCAGAAGAATTACTTGGTTTACCACCAGTTAGAGAAGTGG
* * * *
98789235 AGTTCTCTATAGACCTTATTCCGGGGACAACACCGATATCCATAGCACCGTACAAAATGGCT-CT
131 AGTTCTCTATAGACCTTGTTCCGAGGACAACACCGATATCCATAGCACCCTACAGAATGGCTCCT
* *
98789299 ----TA-T--CA
196 ACCGAATTGAAA
* * * * * *
98789304 G-ATTGAAAGAATAGTTGTTTTGGATACTAAAGTATCTGAGTTGAAGTTTCAGTCA--ACACAGA
1 GAATTGAAAGCATAGTTGTTTTGGATACTAAAGTATCTGAGTCGAAGATTCAGTCAGTGC-CTGG
* * * *
98789366 TTGTTTGTGAATTTCCTAATGTACTTCCATAAGAATTAGC-TAGTTTACCAGCAGTTAGAGAAGT
65 TTGTTTGTGAATTTCCTAATGTATTTCCAGAAGAATTA-CTTGGTTTACCACCAGTTAGAGAAGT
* * *
98789430 GGAGTTCTCTATAGACCTTGTTCCGGGGACAACACCGATATCCATAGCACCCTATAGAATGGTTC
129 GGAGTTCTCTATAGACCTTGTTCCGAGGACAACACCGATATCCATAGCACCCTACAGAATGGCTC
*
98789495 CTACTGAATTGAAA
194 CTACCGAATTGAAA
* *
98789509 GAATTGAAAGCATAGTTGTTTTGGATACTAAAGTATCTAAGTCGAAGATTCAGTCAGT-ACTGGT
1 GAATTGAAAGCATAGTTGTTTTGGATACTAAAGTATCTGAGTCGAAGATTCAGTCAGTGCCTGGT
* * * * * *
98789573 TGTTTGTGAATTTCCTAATGTATTTTCAGAAAAATT-TTCTGGCTTACTACCAGTTAGAGAAGTA
66 TGTTTGTGAATTTCCTAATGTATTTCCAGAAGAATTACT-TGGTTTACCACCAGTTAGAGAAGTG
* * *
98789637 GAGTTCTCTATAGACCTTGTT-CTAGGGACAACACCGATATCTATAGCAACCTACAGAATGGCTC
130 GAGTTCTCTATAGACCTTGTTCCGA-GGACAACACCGATATCCATAGCACCCTACAGAATGGCTC
98789701 CTACCGAATTGAAA
194 CTACCGAATTGAAA
98789715 GAATTGAAA
1 GAATTGAAA
98789724 ACACAATTGC
Statistics
Matches: 883, Mismatches: 120, Indels: 52
0.84 0.11 0.05
Matches are distributed among these distances:
195 1 0.00
196 1 0.00
197 160 0.18
198 5 0.01
200 1 0.00
201 1 0.00
202 1 0.00
203 1 0.00
204 1 0.00
205 185 0.21
206 523 0.59
207 3 0.00
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (207 bp):
GAATTGAAAGCATAGTTGTTTTGGATACTAAAGTATCTGAGTCGAAGATTCAGTCAGTGCCTGGT
TGTTTGTGAATTTCCTAATGTATTTCCAGAAGAATTACTTGGTTTACCACCAGTTAGAGAAGTGG
AGTTCTCTATAGACCTTGTTCCGAGGACAACACCGATATCCATAGCACCCTACAGAATGGCTCCT
ACCGAATTGAAA
Found at i:98789450 original size:403 final size:401
Alignment explanation
Indices: 98788309--98789718 Score: 1689
Period size: 403 Copynumber: 3.5 Consensus size: 401
98788299 ATCTTGCATA
* * *
98788309 TGTTTTGGATACTAAATTATCTAAGTCGAAGATTCAGTCAGTGCCAGTTGTTTGTGAACTTCCTG
1 TGTTTTGGATACTAAAGTATCTAAGTCGAAGATTCAGTCAGTGCCAGTTGTTTGTGAATTTCCTA
* * * * * * *
98788374 ATGTATTTCTGGAAGAATTACCTAGTTTACCACCGGCTAGAAAAGTGGAGTTCTCTATAGACCTT
66 ATGTATTTCCGGAAAAATTACCTGGTTTACCACCAGTTAGAGAAGTAGAGTTCTCTATAGACCTT
* * * **
98788439 GTTCTGAGGACAACACTGATATCCATAGC-ACCTACAAAATGAATCCTT-TC-GAATTGAAA-AC
131 GTTCCGGGGACAACACCGATATCCATAGCAACCTACAAAATGGCTCCTTATCAGAATTGAAAGA-
* * *
98788500 ATAGTTGTTTTGGATACTAAAGTATCTAAGTCT-AAGATTCAGTCAGTGC-CGATTATTTGTGAA
195 ATAGTTGTTTTGGATACTAAAGTATCTGAGT-TGAAGATTCAGTCA--ACACGATTGTTTGTGAA
* * *
98788563 TTTCTTAATGCATTTCCAGAAGAATTACTTGGTTTACCACCAGTTAGAGAAGTGGAGTTCTCTAT
257 TTTCCTAATGTATTTCCAGAAGAATTAC-TAGTTTACCA-CAGTTAGAGAAGTGGAGTTCTCTAT
* * * * * * *
98788628 AAACCTTGTTCCGAGGACAACAGT-GATATCCATAACACCTTATAGACTAGCTTCTACCGAATTG
320 AGACCTTGTTCCGAGGACAACA-TCGATATCCATAGCACCCTATAGAATGGC-CCTACAGAATTG
**
98788692 AAAGAATTGAAAGCACGGT
383 AAAGAATTGAAAGCATAGT
* * **
98788711 TGTTTTGGATACTAAAGTATCTGAGTCGAAGATTTAGTCAGTGCTGGTTGTTTGTGAATTTCCTA
1 TGTTTTGGATACTAAAGTATCTAAGTCGAAGATTCAGTCAGTGCCAGTTGTTTGTGAATTTCCTA
* * *
98788776 ATGTATTT-CTGAAAAATTATCTGGTTTACCACCAGTTAGAGAAGT-GAAGTTTTCTATAGACCT
66 ATGTATTTCCGGAAAAATTACCTGGTTTACCACCAGTTAGAGAAGTAG-AGTTCTCTATAGACCT
* * * * *
98788839 TGTTCCGGGGACAACACCGATATCTATAGCAACCTACAGAATGGCTCCTCCCGAATTGAAATAAT
130 TGTTCCGGGGACAACACCGATATCCATAGCAACCTACAAAATGGCTCCT----TA-T--CAGAAT
* * ** *** *
98788904 TGAAAGCACAGTTGTTTTGGATACTAAAGTATCTGAGCCGAAGATTCAGTCATTGTCGGTTGTTT
188 TGAAAGAATAGTTGTTTTGGATACTAAAGTATCTGAGTTGAAGATTCAGTCA-ACACGATTGTTT
* * * * *
98788969 GTAAATTTCCTGATGTATTTCCGGAAGAATTACTTGATTTGCCACTAGTTAGAGAAGTGGAGTTC
252 GTGAATTTCCTAATGTATTTCCAGAAGAATTACTAG-TTTACCAC-AGTTAGAGAAGTGGAGTTC
* * *
98789034 TCTATAGACCTTGTTTCGAGGACAACATCGATA-CTTATAGCACCCTACAGAATGGACCCTACAG
315 TCTATAGACCTTGTTCCGAGGACAACATCGATATC-CATAGCACCCTATAGAATGG-CCCTACAG
*
98789098 AATTGAAAGAATTGGAAGCATAGT
378 AATTGAAAGAATTGAAAGCATAGT
* * * * *
98789122 TGTTTTGGATACTAAAGTATCTGAGTCAAAAATTCAGTCAGTGCCAGTTGTTTGTGAATTTCTTG
1 TGTTTTGGATACTAAAGTATCTAAGTCGAAGATTCAGTCAGTGCCAGTTGTTTGTGAATTTCCTA
* *
98789187 ATGTATTTCCGGAAGAATTACCTGGTTTGCCACCAGTTAGAGAAGTAGAGTTCTCTATAGACCTT
66 ATGTATTTCCGGAAAAATTACCTGGTTTACCACCAGTTAGAGAAGTAGAGTTCTCTATAGACCTT
*
98789252 ATTCCGGGGACAACACCGATATCCATAGC-ACCGTACAAAATGGCT-CTTATCAG-ATTGAAAGA
131 GTTCCGGGGACAACACCGATATCCATAGCAACC-TACAAAATGGCTCCTTATCAGAATTGAAAGA
*
98789314 ATAGTTGTTTTGGATACTAAAGTATCTGAGTTGAAGTTTCAGTCAACACAGATTGTTTGTGAATT
195 ATAGTTGTTTTGGATACTAAAGTATCTGAGTTGAAGATTCAGTCAACAC-GATTGTTTGTGAATT
* *
98789379 TCCTAATGTACTTCCATAAGAATTAGCTAGTTTACCAGCAGTTAGAGAAGTGGAGTTCTCTATAG
259 TCCTAATGTATTTCCAGAAGAATTA-CTAGTTTACCA-CAGTTAGAGAAGTGGAGTTCTCTATAG
* * * *
98789444 ACCTTGTTCCGGGGACAACACCGATATCCATAGCACCCTATAGAATGGTTCCTACTGAATTGAAA
322 ACCTTGTTCCGAGGACAACATCGATATCCATAGCACCCTATAGAATGG-CCCTACAGAATTGAAA
98789509 GAATTGAAAGCATAGT
386 GAATTGAAAGCATAGT
* **
98789525 TGTTTTGGATACTAAAGTATCTAAGTCGAAGATTCAGTCAGTACTGGTTGTTTGTGAATTTCCTA
1 TGTTTTGGATACTAAAGTATCTAAGTCGAAGATTCAGTCAGTGCCAGTTGTTTGTGAATTTCCTA
* * ** * *
98789590 ATGTATTTTCAGAAAAATTTTCTGGCTTACTACCAGTTAGAGAAGTAGAGTTCTCTATAGACCTT
66 ATGTATTTCCGGAAAAATTACCTGGTTTACCACCAGTTAGAGAAGTAGAGTTCTCTATAGACCTT
** * * *
98789655 GTTCTAGGGACAACACCGATATCTATAGCAACCTACAGAATGGCTCC-TA-CCGAATTGAAAGAA
131 GTTCCGGGGACAACACCGATATCCATAGCAACCTACAAAATGGCTCCTTATCAGAATTGAAAGAA
98789718 T
196 T
98789719 TGAAAACACA
Statistics
Matches: 859, Mismatches: 120, Indels: 57
0.83 0.12 0.06
Matches are distributed among these distances:
400 1 0.00
401 70 0.08
402 84 0.10
403 348 0.41
404 10 0.01
406 1 0.00
407 1 0.00
408 1 0.00
410 6 0.01
411 248 0.29
412 88 0.10
413 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.32
Consensus pattern (401 bp):
TGTTTTGGATACTAAAGTATCTAAGTCGAAGATTCAGTCAGTGCCAGTTGTTTGTGAATTTCCTA
ATGTATTTCCGGAAAAATTACCTGGTTTACCACCAGTTAGAGAAGTAGAGTTCTCTATAGACCTT
GTTCCGGGGACAACACCGATATCCATAGCAACCTACAAAATGGCTCCTTATCAGAATTGAAAGAA
TAGTTGTTTTGGATACTAAAGTATCTGAGTTGAAGATTCAGTCAACACGATTGTTTGTGAATTTC
CTAATGTATTTCCAGAAGAATTACTAGTTTACCACAGTTAGAGAAGTGGAGTTCTCTATAGACCT
TGTTCCGAGGACAACATCGATATCCATAGCACCCTATAGAATGGCCCTACAGAATTGAAAGAATT
GAAAGCATAGT
Found at i:98789576 original size:609 final size:603
Alignment explanation
Indices: 98788309--98789722 Score: 1741
Period size: 609 Copynumber: 2.3 Consensus size: 603
98788299 ATCTTGCATA
* * *
98788309 TGTTTTGGATACTAAATTATCTAAGTCGAAGATTCAGTCAGTGCCAGTTGTTTGTGAACTTCCTG
1 TGTTTTGGATACTAAAGTATCTAAGTCGAAGATTCAGTCAGT--CGGTTGTTTGTGAATTTCCTG
* * * * *
98788374 ATGTATTTCTGGAAGAATTACCT-AGTTTACCACCGGCTAGAAAAGTGGAGTTCTCTATAGACCT
64 ATGTATTTCCGGAAGAATTACTTGA-TTTACCACCAGTTAGAGAAGTGGAGTTCTCTATAGACCT
* * * * *
98788438 TGTTCTGAGGACAACACTGATATCCATAGCACCTACAAAATGAATCCTTTCGAATT----GAA--
128 TGTTC-GAGGACAACAC-GATATCTATAGCACCTACAGAATGGA-CCCTACGAATTGAAAGAATT
* *
98788497 -AACATAGTTGTTTTGGATACTAAAGTATCTAAGTCTAAGATTCAGTCAGTGCCGATTATTTGTG
190 GAACATAGTTGTTTTGGATACTAAAGTATCTAAGTCAAAAATTCAGTCAGTGCCGATTATTTGTG
* *
98788561 AATTTCTTAATGCATTTCCAGAAGAATTACTTGGTTTACCACCAGTTAGAGAAGTGGAGTTCTCT
255 AATTTCTTAATGCATTTCCAGAAGAATTACCTGGTTTACCACCAGTTAGAGAAGTAGAGTTCTCT
* ** * * * * *
98788626 ATAAACCTTGTTCCGAGGACAACAGTGATATCCATAACACCTTATAGACTAGCTTCTACCGAATT
320 ATAAACCTTATTCCGAGGACAACACCGATATCCATAACACCGTACAAAATAGCTTCTACAGAATT
*** *
98788691 GAAAGAATTGAAAGCACGGTTGTTTTGGATACTAAAGTATCTGAGTCGAAGATTTAGTCAGTGCT
385 GAAAGAATT---A--AC-GTTGTTTTGGATACTAAAGTATCTGAGTCGAAGATTTAGTCAACACA
* * * *
98788756 GGTTGTTTGTGAATTTCCTAATGTATTTCTGAAAAATTATCTGGTTTACCACCAGTTAGAGAAGT
444 GATTGTTTGTGAATTTCCTAATGTATTCCTGAAAAATTAGCTAGTTTACCACCAGTTAGAGAAGT
* *
98788821 GAAGTTTTCTATAGACCTTGTTCCGGGGACAACACCGATATCTATAGCAACCTACAGAATGGCTC
509 GAAGTTCTCTATAGACCTTGTTCCGGGGACAACACCGATATCCATAGCAACCTACAGAATGGCTC
* *
98788886 CTCCCGAATTGAAATAATTGAAAGCACAGT
574 CTACCGAATTGAAAGAATTGAAAGCACAGT
* * *
98788916 TGTTTTGGATACTAAAGTATCTGAGCCGAAGATTCAGTCATTGTCGGTTGTTTGTAAATTTCCTG
1 TGTTTTGGATACTAAAGTATCTAAGTCGAAGATTCAGTCA--GTCGGTTGTTTGTGAATTTCCTG
* *
98788981 ATGTATTTCCGGAAGAATTACTTGATTTGCCACTAGTTAGAGAAGTGGAGTTCTCTATAGACCTT
64 ATGTATTTCCGGAAGAATTACTTGATTTACCACCAGTTAGAGAAGTGGAGTTCTCTATAGACCTT
98789046 GTTTCGAGGACAACATCGATA-CTTATAGCACCCTACAGAATGGACCCTACAGAATTGAAAGAAT
129 G-TTCGAGGACAACA-CGATATC-TATAGCA-CCTACAGAATGGACCCTAC-GAATTGAAAGAAT
* *
98789110 TGGAAGCATAGTTGTTTTGGATACTAAAGTATCTGAGTCAAAAATTCAGTCAGTGCC-AGTTGTT
189 T-GAA-CATAGTTGTTTTGGATACTAAAGTATCTAAGTCAAAAATTCAGTCAGTGCCGA-TTATT
* * * *
98789174 TGTGAATTTCTTGATGTATTTCCGGAAGAATTACCTGGTTTGCCACCAGTTAGAGAAGTAGAGTT
251 TGTGAATTTCTTAATGCATTTCCAGAAGAATTACCTGGTTTACCACCAGTTAGAGAAGTAGAGTT
* * * *
98789239 CTCTATAGACCTTATTCCGGGGACAACACCGATATCCATAGCACCGTACAAAATGGC-TCTTATC
316 CTCTATAAACCTTATTCCGAGGACAACACCGATATCCATAACACCGTACAAAATAGCTTC-TA-C
*
98789303 AG-ATTGAAAGAA-T-A-GTTGTTTTGGATACTAAAGTATCTGAGTTGAAG-TTTCAGTCAACAC
379 AGAATTGAAAGAATTAACGTTGTTTTGGATACTAAAGTATCTGAGTCGAAGATTT-AGTCAACAC
* *
98789363 AGATTGTTTGTGAATTTCCTAATGTACTTCCAT-AAGAATTAGCTAGTTTACCAGCAGTTAGAGA
443 AGATTGTTTGTGAATTTCCTAATGTA-TTCC-TGAAAAATTAGCTAGTTTACCACCAGTTAGAGA
* * *
98789427 AGTGGAGTTCTCTATAGACCTTGTTCCGGGGACAACACCGATATCCATAGCACCCTATAGAATGG
506 AGTGAAGTTCTCTATAGACCTTGTTCCGGGGACAACACCGATATCCATAGCAACCTACAGAATGG
* * *
98789492 TTCCTACTGAATTGAAAGAATTGAAAGCATAGT
571 CTCCTACCGAATTGAAAGAATTGAAAGCACAGT
*
98789525 TGTTTTGGATACTAAAGTATCTAAGTCGAAGATTCAGTCAGTACTGGTTGTTTGTGAATTTCCTA
1 TGTTTTGGATACTAAAGTATCTAAGTCGAAGATTCAGTCAGT-C-GGTTGTTTGTGAATTTCCTG
* * * * ** * *
98789590 ATGTATTTTCAGAAAAATT-TTCTGGCTTACTACCAGTTAGAGAAGTAGAGTTCTCTATAGACCT
64 ATGTATTTCCGGAAGAATTACT-TGATTTACCACCAGTTAGAGAAGTGGAGTTCTCTATAGACCT
*
98789654 TGTTCTAGGGACAACACCGATATCTATAGCAACCTACAGAATGG-CTCCTACCGAATTGAAAGAA
128 TGTTCGA-GGACAACA-CGATATCTATAGC-ACCTACAGAATGGAC-CCTA-CGAATTGAAAGAA
98789718 TTGAA
188 TTGAA
98789723 AACACAATTG
Statistics
Matches: 699, Mismatches: 77, Indels: 61
0.84 0.09 0.07
Matches are distributed among these distances:
606 1 0.00
607 141 0.20
608 93 0.13
609 279 0.40
610 5 0.01
612 3 0.00
616 6 0.01
617 169 0.24
618 2 0.00
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (603 bp):
TGTTTTGGATACTAAAGTATCTAAGTCGAAGATTCAGTCAGTCGGTTGTTTGTGAATTTCCTGAT
GTATTTCCGGAAGAATTACTTGATTTACCACCAGTTAGAGAAGTGGAGTTCTCTATAGACCTTGT
TCGAGGACAACACGATATCTATAGCACCTACAGAATGGACCCTACGAATTGAAAGAATTGAACAT
AGTTGTTTTGGATACTAAAGTATCTAAGTCAAAAATTCAGTCAGTGCCGATTATTTGTGAATTTC
TTAATGCATTTCCAGAAGAATTACCTGGTTTACCACCAGTTAGAGAAGTAGAGTTCTCTATAAAC
CTTATTCCGAGGACAACACCGATATCCATAACACCGTACAAAATAGCTTCTACAGAATTGAAAGA
ATTAACGTTGTTTTGGATACTAAAGTATCTGAGTCGAAGATTTAGTCAACACAGATTGTTTGTGA
ATTTCCTAATGTATTCCTGAAAAATTAGCTAGTTTACCACCAGTTAGAGAAGTGAAGTTCTCTAT
AGACCTTGTTCCGGGGACAACACCGATATCCATAGCAACCTACAGAATGGCTCCTACCGAATTGA
AAGAATTGAAAGCACAGT
Found at i:98797806 original size:4 final size:4
Alignment explanation
Indices: 98797784--98797828 Score: 63
Period size: 4 Copynumber: 10.8 Consensus size: 4
98797774 TTTAATAATA
*
98797784 AAAT AAAG AAAT GAAAT AAAT AAAT AAAT AAAT AAAT GAAAT AAA
1 AAAT AAAT AAAT -AAAT AAAT AAAT AAAT AAAT AAAT -AAAT AAA
98797829 AGAAATGAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
4 29 0.78
5 8 0.22
ACGTcount: A:0.73, C:0.00, G:0.07, T:0.20
Consensus pattern (4 bp):
AAAT
Found at i:98797827 original size:9 final size:9
Alignment explanation
Indices: 98797792--98797834 Score: 63
Period size: 8 Copynumber: 5.0 Consensus size: 9
98797782 TAAAATAAAG
98797792 AAATGAAAT
1 AAATGAAAT
98797801 AAAT-AAAT
1 AAATGAAAT
98797809 AAAT-AAAT
1 AAATGAAAT
98797817 AAATGAAAT
1 AAATGAAAT
*
98797826 AAAAGAAAT
1 AAATGAAAT
98797835 GAAAAAGAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
8 16 0.50
9 16 0.50
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.21
Consensus pattern (9 bp):
AAATGAAAT
Found at i:98799337 original size:163 final size:161
Alignment explanation
Indices: 98799066--98799541 Score: 844
Period size: 163 Copynumber: 3.0 Consensus size: 161
98799056 GGAGATTTTT
98799066 TGATCAGAAATGTACAGAATTCTTGAAGCTTAAACAGGATCATATGATCGTAACTGTGTATGAAG
1 TGATCAGAAATGTACAGAATTCTTGAAGCTTAAACAGGATCATATGATCGTAACTGTGTATGAAG
98799131 GGAATTTGTTTGATTCAATACGTATAGCAGAGGGTGTATTCCGATAGAAACCGTATGATACAAAT
66 GGAATTTGTTTGATTCAATACGTATAGCAGAGGGTGTATTCCGATAGAAACCGTATGATACAAAT
98799196 GGTTTGAAGATGGTTTAAATGAGGACAGAAG
131 GGTTTGAAGATGGTTTAAATGAGGACAGAAG
98799227 TTGGATCAGAAATGTACAGAATTCTTGAAGCTTAAACAGGATCATATGATCGTAACTGTGTATGA
1 -T-GATCAGAAATGTACAGAATTCTTGAAGCTTAAACAGGATCATATGATCGTAACTGTGTATGA
98799292 AGGGAATTTGTTTGATTCAATACGTATAGCAGAGGGTGTATTCCGATAGAAACCGTATGATACAA
64 AGGGAATTTGTTTGATTCAATACGTATAGCAGAGGGTGTATTCCGATAGAAACCGTATGATACAA
98799357 ATGGTTTGAAGATGGTTTAAATGAGGACAGAAG
129 ATGGTTTGAAGATGGTTTAAATGAGGACAGAAG
98799390 T--T--G--A---ACAGAATTCTTGAAGCTTAAACAGGATCATATGATCGTAACTGTGTATGAAG
1 TGATCAGAAATGTACAGAATTCTTGAAGCTTAAACAGGATCATATGATCGTAACTGTGTATGAAG
* *
98799446 GGAATTTGTTTGATTGAATAAGTATAGCAGAGGGTGTATTCCGATAGAAACCGTATGATACAAAT
66 GGAATTTGTTTGATTCAATACGTATAGCAGAGGGTGTATTCCGATAGAAACCGTATGATACAAAT
*
98799511 GGTTTGAAGATGGTTTAAATGAAGACAGAAG
131 GGTTTGAAGATGGTTTAAATGAGGACAGAAG
98799542 CTGAATAATA
Statistics
Matches: 310, Mismatches: 3, Indels: 12
0.95 0.01 0.04
Matches are distributed among these distances:
152 145 0.47
155 1 0.00
157 1 0.00
159 1 0.00
162 2 0.01
163 160 0.52
ACGTcount: A:0.36, C:0.10, G:0.25, T:0.29
Consensus pattern (161 bp):
TGATCAGAAATGTACAGAATTCTTGAAGCTTAAACAGGATCATATGATCGTAACTGTGTATGAAG
GGAATTTGTTTGATTCAATACGTATAGCAGAGGGTGTATTCCGATAGAAACCGTATGATACAAAT
GGTTTGAAGATGGTTTAAATGAGGACAGAAG
Found at i:98799481 original size:152 final size:152
Alignment explanation
Indices: 98799242--98799546 Score: 574
Period size: 152 Copynumber: 2.0 Consensus size: 152
98799232 TCAGAAATGT
98799242 ACAGAATTCTTGAAGCTTAAACAGGATCATATGATCGTAACTGTGTATGAAGGGAATTTGTTTGA
1 ACAGAATTCTTGAAGCTTAAACAGGATCATATGATCGTAACTGTGTATGAAGGGAATTTGTTTGA
*
98799307 TTCAATACGTATAGCAGAGGGTGTATTCCGATAGAAACCGTATGATACAAATGGTTTGAAGATGG
66 TTCAATAAGTATAGCAGAGGGTGTATTCCGATAGAAACCGTATGATACAAATGGTTTGAAGATGG
* *
98799372 TTTAAATGAGGACAGAAGTTGA
131 TTTAAATGAAGACAGAAGCTGA
98799394 ACAGAATTCTTGAAGCTTAAACAGGATCATATGATCGTAACTGTGTATGAAGGGAATTTGTTTGA
1 ACAGAATTCTTGAAGCTTAAACAGGATCATATGATCGTAACTGTGTATGAAGGGAATTTGTTTGA
*
98799459 TTGAATAAGTATAGCAGAGGGTGTATTCCGATAGAAACCGTATGATACAAATGGTTTGAAGATGG
66 TTCAATAAGTATAGCAGAGGGTGTATTCCGATAGAAACCGTATGATACAAATGGTTTGAAGATGG
98799524 TTTAAATGAAGACAGAAGCTGA
131 TTTAAATGAAGACAGAAGCTGA
98799546 A
1 A
98799547 TAATATAGAA
Statistics
Matches: 149, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
152 149 1.00
ACGTcount: A:0.36, C:0.10, G:0.25, T:0.29
Consensus pattern (152 bp):
ACAGAATTCTTGAAGCTTAAACAGGATCATATGATCGTAACTGTGTATGAAGGGAATTTGTTTGA
TTCAATAAGTATAGCAGAGGGTGTATTCCGATAGAAACCGTATGATACAAATGGTTTGAAGATGG
TTTAAATGAAGACAGAAGCTGA
Found at i:98800641 original size:26 final size:26
Alignment explanation
Indices: 98800605--98800655 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
98800595 TTAAACTGAC
98800605 TTCTTTACAACAGGTCTGCAAAGCTA
1 TTCTTTACAACAGGTCTGCAAAGCTA
*
98800631 TTCTTTACAACAGGTCTGCATAGCT
1 TTCTTTACAACAGGTCTGCAAAGCT
98800656 CAAAAATGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (26 bp):
TTCTTTACAACAGGTCTGCAAAGCTA
Found at i:98815203 original size:19 final size:19
Alignment explanation
Indices: 98815179--98815218 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
98815169 GCACTACTCG
98815179 AAATTGCCTCAACAATTCT
1 AAATTGCCTCAACAATTCT
98815198 AAATTGCCTCAACAATTCT
1 AAATTGCCTCAACAATTCT
98815217 AA
1 AA
98815219 TATTATTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.40, C:0.25, G:0.05, T:0.30
Consensus pattern (19 bp):
AAATTGCCTCAACAATTCT
Found at i:98818166 original size:11 final size:11
Alignment explanation
Indices: 98818150--98818180 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
98818140 AGGTATGAGT
98818150 AGGTATGGGAA
1 AGGTATGGGAA
*
98818161 AGGTATGGGCA
1 AGGTATGGGAA
98818172 AGGTATGGG
1 AGGTATGGG
98818181 GTATATTCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.29, C:0.03, G:0.48, T:0.19
Consensus pattern (11 bp):
AGGTATGGGAA
Found at i:98823822 original size:3 final size:3
Alignment explanation
Indices: 98823814--98823841 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
98823804 TGTATTATAG
98823814 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
98823842 CATTTTAGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:98847338 original size:27 final size:27
Alignment explanation
Indices: 98847298--98847351 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
98847288 TGTCATGTGA
* *
98847298 AATTGAATGGTAAATTATTGTTACATG
1 AATTGAATGGTAAATTACTATTACATG
*
98847325 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGTAAATTACTATTACATG
98847352 GGTTGTATGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.39, C:0.06, G:0.15, T:0.41
Consensus pattern (27 bp):
AATTGAATGGTAAATTACTATTACATG
Found at i:98854089 original size:56 final size:56
Alignment explanation
Indices: 98854003--98854234 Score: 446
Period size: 56 Copynumber: 4.1 Consensus size: 56
98853993 TATTAGTTTA
* *
98854003 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTGATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
98854059 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
98854115 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
98854171 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
98854227 TTGCCCAT
1 TTGCCCAT
98854235 CATCCCTTGT
Statistics
Matches: 174, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 174 1.00
ACGTcount: A:0.23, C:0.22, G:0.09, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:98856157 original size:47 final size:44
Alignment explanation
Indices: 98856010--98856219 Score: 172
Period size: 47 Copynumber: 4.5 Consensus size: 44
98856000 TGATGCCATA
* * **
98856010 TCCCAGACATGGTCTTACACTGGCTCTCATATACACGTGCTGATGCATG
1 TCCCAGACAT-GTCTTACACTGG--CTCATCT-C-TGTGCCAATGCATG
* * * * * *
98856059 TCCCAGACATGTCTTACACTAGCACAACTCT-TAGTCGATGCGTG
1 TCCCAGACATGTCTTACACTGGCTCATCTCTGT-GCCAATGCATG
*
98856103 TCCCAGACACGTCTTACACTGGCT-ATCTCTGTCGAGGCCAATGCATG
1 TCCCAGACATGTCTTACACTGGCTCATCTCTGT----GCCAATGCATG
* *
98856150 TCCCAGACATGTCTTACACTGGCACTCATCTCTGTGTCGATGCCATG
1 TCCCAGACATGTCTTACACTGG--CTCATCTCTGTGCCAATG-CATG
98856197 TCCCAGACATGTCTTACACTGGC
1 TCCCAGACATGTCTTACACTGGC
98856220 GCACAAATCA
Statistics
Matches: 133, Mismatches: 19, Indels: 22
0.76 0.11 0.13
Matches are distributed among these distances:
43 6 0.05
44 30 0.23
45 2 0.02
46 9 0.07
47 55 0.41
48 11 0.08
49 12 0.09
50 8 0.06
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.28
Consensus pattern (44 bp):
TCCCAGACATGTCTTACACTGGCTCATCTCTGTGCCAATGCATG
Found at i:98856235 original size:91 final size:88
Alignment explanation
Indices: 98856001--98856237 Score: 217
Period size: 91 Copynumber: 2.6 Consensus size: 88
98855991 ATATATTGCT
* * **
98856001 GATGCCATATCCCAGACATGGTCTTACACTGGCTCTCATATACACGTGCTGATGCATGTCCCAGA
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGC-CACATAT-CAC---CCAATGCATGTCCCAGA
98856066 CATGTCTTACACTAGCACAACTCTTAGTC
60 CATGTCTTACACTAGCACAACTCTTAGTC
* * * * * *
98856095 GATG-CGTGTCCCAGACACGTCTTACACTGGCTATCTCTGTCGAGGCCAATGCATGTCCCAGACA
1 GATGCCATGTCCCAGACATGTCTTACACTGGCCA-C-ATATC-A-CCCAATGCATGTCCCAGACA
* *
98856159 TGTCTTACACTGGCACTCATCTCTGT-GTC
62 TGTCTTACACTAGCA--CAACTCT-TAGTC
*
98856188 GATGCCATGTCCCAGACATGTCTTACACTGGCGCACAAATCACCCAATGC
1 GATGCCATGTCCCAGACATGTCTTACACTGGC-CACATATCACCCAATGC
98856238 CTTGGCATGA
Statistics
Matches: 115, Mismatches: 19, Indels: 21
0.74 0.12 0.14
Matches are distributed among these distances:
91 38 0.33
92 16 0.14
93 29 0.25
94 31 0.27
95 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (88 bp):
GATGCCATGTCCCAGACATGTCTTACACTGGCCACATATCACCCAATGCATGTCCCAGACATGTC
TTACACTAGCACAACTCTTAGTC
Found at i:98861607 original size:18 final size:18
Alignment explanation
Indices: 98861555--98861608 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 18
98861545 AGATTAAGAG
*
98861555 AGAAAAATAAATAAATAG
1 AGAAAAATAAATAAATAA
* **
98861573 TG-AAAGGAAATAAATAA
1 AGAAAAATAAATAAATAA
*
98861590 AGAAAAATAAATTAATAA
1 AGAAAAATAAATAAATAA
98861608 A
1 A
98861609 TCAATCAAGA
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
17 13 0.48
18 14 0.52
ACGTcount: A:0.70, C:0.00, G:0.11, T:0.19
Consensus pattern (18 bp):
AGAAAAATAAATAAATAA
Found at i:98868591 original size:46 final size:46
Alignment explanation
Indices: 98868459--98868771 Score: 195
Period size: 46 Copynumber: 6.7 Consensus size: 46
98868449 ATATGTGTGT
* * ** *
98868459 TAGTGTAAGACATGTCTGGGACATGCATCGGCCACATCATGAGAGC
1 TAGTGTAAGACATGTCTAGGACATGCATCGGCCTCAAGATAAGAGC
* * * ** *
98868505 CAGTGTAAGACATGTCTAGGACATGCATCAGCATTGAGATAAGAGA
1 TAGTGTAAGACATGTCTAGGACATGCATCGGCCTCAAGATAAGAGC
* *
98868551 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATATACAAGC
1 TAGTGTAAGACATGTCTAGGACATGCATCGGCCTCAAGATA-A-GAGC
* * * * * *
98868599 TAGTGTAAGACTTGTCTAGGACATGGCATCAG-CT--TGTTATGTG-
1 TAGTGTAAGACATGTCTAGGACAT-GCATCGGCCTCAAGATAAGAGC
* * * * *
98868642 TCAGTGTAAGACCTGTCTCGGACATGGCATCGACACTGATAGATGAGAGC
1 T-AGTGTAAGACATGTCTAGGACAT-GCATCGGC-CTCA-AGATAAGAGC
* * * * * * *
98868692 CAGTGTAAGACCTATCTGGGACATGGCATCAGCCTCATTATATAAAAG-
1 TAGTGTAAGACATGTCTAGGACAT-GCATCGGCCTCA--AGATAAGAGC
*
98868740 TCAGTGTAAGACCTGTCTAGGACATGGCATCG
1 T-AGTGTAAGACATGTCTAGGACAT-GCATCG
98868772 CCTTGATGTG
Statistics
Matches: 206, Mismatches: 49, Indels: 21
0.75 0.18 0.08
Matches are distributed among these distances:
43 1 0.00
44 28 0.14
46 75 0.36
47 1 0.00
48 29 0.14
49 72 0.35
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (46 bp):
TAGTGTAAGACATGTCTAGGACATGCATCGGCCTCAAGATAAGAGC
Found at i:98868648 original size:92 final size:90
Alignment explanation
Indices: 98868454--98868724 Score: 251
Period size: 92 Copynumber: 2.9 Consensus size: 90
98868444 GGGTGATATG
* *
98868454 TGTGTTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATCATGAGAGCCAGTGTAAGACATG
1 TGTG-TAGTGTAAGACATGTCTGGGACATGCATCGGCCACAACATGAAAGCCAGTGTAAGACATG
98868519 TCTAGGACATGCATCAGCATTGAGATA
65 TCTAGGACATGCATCAGCATT-AGATA
* * * * * * *
98868546 AGAGATAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATATACAAGCTAGTGTAAGACT
1 TGTG-TAGTGTAAGACATGTCTGGGACATGCATCGGCCACAACAT-GA-AAGCCAGTGTAAGACA
*
98868611 TGTCTAGGACATGGCATCAGC-TT-GTTA
63 TGTCTAGGACAT-GCATCAGCATTAGATA
* * * * *
98868638 TGTGTCAGTGTAAGACCTGTCTCGGACATGGCATC-GACACTGATAGATGAGAGCCAGTGTAAGA
1 TGTGT-AGTGTAAGACATGTCTGGGACAT-GCATCGGCCAC--A-ACATGAAAGCCAGTGTAAGA
* * *
98868702 CCTATCTGGGACATGGCATCAGC
61 CATGTCTAGGACAT-GCATCAGC
98868725 CTCATTATAT
Statistics
Matches: 148, Mismatches: 23, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
91 1 0.01
92 68 0.46
93 38 0.26
94 29 0.20
95 12 0.08
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (90 bp):
TGTGTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAACATGAAAGCCAGTGTAAGACATGT
CTAGGACATGCATCAGCATTAGATA
Found at i:98868703 original size:49 final size:48
Alignment explanation
Indices: 98868460--98868813 Score: 186
Period size: 46 Copynumber: 7.5 Consensus size: 48
98868450 TATGTGTGTT
* * ** * *
98868460 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCACAT-CATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTGATAGATGAAAGCC
* * * **
98868506 AGTGTAAGACATGTCTAGGACAT-GCATC-AGC--ATTGAGAT-AAGAGAT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTGA-T-AGATGAA-AGCC
* * * * *
98868552 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCA-AGATATACAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTGATAGAT-GA-AAGCC
* * * * * *
98868600 AGTGTAAGACTTGTCTAGGACATGGCATC-AGCTTG-T-TATG--TGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA-CCTGATAGATGAAAGCC
* *
98868644 AGTGTAAGACCTGTCTCGGACATGGCATCGACACTGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTGATAGATGAAAGCC
* * * * *
98868693 AGTGTAAGACCTATCTGGGACATGGCATC-AGCCTCATTATATAAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA-CCTGA-TAGATGAAAGCC
* ** *
98868742 AGTGTAAGACCTGTCTAGGACATGGCATCG-CCTTGAT-G-TGTTAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACC-TGATAGATGAAAGCC
98868788 AGTGTAAGACCATGTCTGGGACATGG
1 AGTGTAAGACC-TGTCTGGGACATGG
98868814 TATCAGCATC
Statistics
Matches: 240, Mismatches: 44, Indels: 47
0.73 0.13 0.14
Matches are distributed among these distances:
43 1 0.00
44 30 0.12
45 5 0.02
46 77 0.32
47 17 0.07
48 34 0.14
49 76 0.32
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCTGATAGATGAAAGCC
Found at i:98868751 original size:142 final size:139
Alignment explanation
Indices: 98868505--98868821 Score: 358
Period size: 142 Copynumber: 2.2 Consensus size: 139
98868495 TCATGAGAGC
* * * *
98868505 CAGTGTAAGACATGTCTAGGACAT-GCATCAGCATTGAGATAAGAGATAGTGTAAGACATGTCTG
1 CAGTGTAAGACCTGTCTAGGACATGGCATCAGCACTGAGATAAGAGACAGTGTAAGACATATCTG
* * *
98868569 GGACATGCATCGGCCTCAAGATATACAAGCTAGTGTAAGACTTGTCTAGGACATGGCATCAG-CT
66 GGACATGCATCAGCCTCAAGATATAAAAGCTAGTGTAAGACCTGTCTAGGACATGGCATC-GCCT
98868633 TGTTATGTG-T-
130 TG--ATGTGTTA
* * * *
98868643 CAGTGTAAGACCTGTCTCGGACATGGCATC-GACACTGATAGATGAGAGCCAGTGTAAGACCTAT
1 CAGTGTAAGACCTGTCTAGGACATGGCATCAG-CACTG--AGATAAGAGACAGTGTAAGACATAT
**
98868707 CTGGGACATGGCATCAGCCTCATTATATAAAAG-TCAGTGTAAGACCTGTCTAGGACATGGCATC
63 CTGGGACAT-GCATCAGCCTCAAGATATAAAAGCT-AGTGTAAGACCTGTCTAGGACATGGCATC
98868771 GCCTTGATGTGTTA
126 GCCTTGATGTGTTA
* *
98868785 GCTAGTGTAAGACCATGTCTGGGACATGGTATCAGCA
1 -C-AGTGTAAGACC-TGTCTAGGACATGGCATCAGCA
98868822 TCTTATCCCA
Statistics
Matches: 151, Mismatches: 15, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
138 23 0.15
139 9 0.06
140 5 0.03
141 32 0.21
142 51 0.34
143 1 0.01
144 11 0.07
145 18 0.12
146 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (139 bp):
CAGTGTAAGACCTGTCTAGGACATGGCATCAGCACTGAGATAAGAGACAGTGTAAGACATATCTG
GGACATGCATCAGCCTCAAGATATAAAAGCTAGTGTAAGACCTGTCTAGGACATGGCATCGCCTT
GATGTGTTA
Found at i:98873207 original size:50 final size:50
Alignment explanation
Indices: 98873132--98873261 Score: 197
Period size: 50 Copynumber: 2.6 Consensus size: 50
98873122 AAGGGTGGGA
*
98873132 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCAG
1 TGCCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCTCATATATCAG
* * * *
98873182 TGCCGATACGATGTTCCAGACATGGTCTTACACTGGCTCTCATATATCGG
1 TGCCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCTCATATATCAG
* *
98873232 TGTCAATGCCATGTTCCAGACATGGTCTTA
1 TGCCGATGCCATGTTCCAGACATGGTCTTA
98873262 ACCGATGCCA
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 71 1.00
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (50 bp):
TGCCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCTCATATATCAG
Found at i:98873315 original size:79 final size:79
Alignment explanation
Indices: 98873192--98873340 Score: 289
Period size: 79 Copynumber: 1.9 Consensus size: 79
98873182 TGCCGATACG
*
98873192 ATGTTCCAGACATGGTCTTACACTGGCTCTCATATATCGGTGTCAATGCCATGTTCCAGACATGG
1 ATGTTCCAGACATGGTCTTACACTAGCTCTCATATATCGGTGTCAATGCCATGTTCCAGACATGG
98873257 TCTTAACCGATGCC
66 TCTTAACCGATGCC
98873271 ATGTTCCAGACATGGTCTTACACTAGCTCTCATATATCGGTGTCAATGCCATGTTCCAGACATGG
1 ATGTTCCAGACATGGTCTTACACTAGCTCTCATATATCGGTGTCAATGCCATGTTCCAGACATGG
98873336 TCTTA
66 TCTTA
98873341 CACCAGCTCT
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 69 1.00
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (79 bp):
ATGTTCCAGACATGGTCTTACACTAGCTCTCATATATCGGTGTCAATGCCATGTTCCAGACATGG
TCTTAACCGATGCC
Found at i:98873370 original size:129 final size:129
Alignment explanation
Indices: 98873134--98873390 Score: 415
Period size: 129 Copynumber: 2.0 Consensus size: 129
98873124 GGGTGGGATG
* *
98873134 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCAGTGCCGATACGATGTTCC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCAGTGCCAATACCATGTTCC
** * *
98873199 AGACATGGTCTTACACTGGCTCTCATATATCGGTGTCAATGCCATGTTCCAGACATGGTCTTAA
66 AGACATGGTCTTACACCAGCTCTCATATATCGGTGCCAATGCCATGTCCCAGACATGGTCTTAA
* * * *
98873263 CCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCTCATATATCGGTGTCAATGCCATGTTCC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCAGTGCCAATACCATGTTCC
*
98873328 AGACATGGTCTTACACCAGCTCTCATATATCGGTGCCGATGCCATGTCCCAGACATGGTCTTA
66 AGACATGGTCTTACACCAGCTCTCATATATCGGTGCCAATGCCATGTCCCAGACATGGTCTTA
98873391 CACTAGCTCT
Statistics
Matches: 117, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
129 117 1.00
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (129 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCAGTGCCAATACCATGTTCC
AGACATGGTCTTACACCAGCTCTCATATATCGGTGCCAATGCCATGTCCCAGACATGGTCTTAA
Found at i:98873432 original size:48 final size:50
Alignment explanation
Indices: 98873263--98873453 Score: 287
Period size: 50 Copynumber: 3.9 Consensus size: 50
98873253 ATGGTCTTAA
98873263 CCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCTCATATATCGGTG
1 CCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCTCATATATCGGTG
* * *
98873313 TCAATGCCATGTTCCAGACATGGTCTTACACCAGCTCTCATATATCGGTG
1 CCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCTCATATATCGGTG
* *
98873363 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-TAT-GATG
1 CCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCTCATATATCGGTG
* * * *
98873411 CCGATGCCATGTTCCAAACATGGTCTTGCACTGGCTCACATAT
1 CCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCTCATAT
98873454 TACCCTAGTA
Statistics
Matches: 127, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
48 39 0.31
49 4 0.03
50 84 0.66
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (50 bp):
CCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCTCATATATCGGTG
Found at i:98884197 original size:20 final size:20
Alignment explanation
Indices: 98884159--98884198 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
98884149 CTATGTATTT
*
98884159 CATAAAATTCAAAATTTTTC
1 CATAAAATTCAAAACTTTTC
* *
98884179 CATAAAATTTACAACTTTTC
1 CATAAAATTCAAAACTTTTC
98884199 AATTTAGTCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.17, G:0.00, T:0.40
Consensus pattern (20 bp):
CATAAAATTCAAAACTTTTC
Found at i:98885964 original size:48 final size:45
Alignment explanation
Indices: 98885793--98886004 Score: 171
Period size: 46 Copynumber: 4.6 Consensus size: 45
98885783 ACATCGACAC
* *
98885793 CATGTCCCAGACATGGTCTTACACT-G-ACACATCTCGTAGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCACTCATCTCATA-CCGATG
* * * * ** *
98885838 CATGTCCCAGGCGTGTCTTACACTAGC-TTACGTCTCGAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCACT-CATCTC-ATACCGATG
*
98885884 CATGTCTCAGACATGTCTTACACTAGCACTCATCTCAATACCGATG
1 CATGTCCCAGACATGTCTTACACTAGCACTCATCTC-ATACCGATG
* * * * *
98885930 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-GTGGCCGATA
1 -CATGTCCCAGACAT-GTCTTACACTAGCACTCAT-CTCAT-ACCGATG
*
98885978 CATGTCCAAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
98886005 TTACACAAGT
Statistics
Matches: 133, Mismatches: 25, Indels: 17
0.76 0.14 0.10
Matches are distributed among these distances:
44 10 0.08
45 13 0.10
46 58 0.44
47 28 0.21
48 23 0.17
49 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCACTCATCTCATACCGATG
Found at i:98885982 original size:94 final size:91
Alignment explanation
Indices: 98885793--98886004 Score: 227
Period size: 94 Copynumber: 2.3 Consensus size: 91
98885783 ACATCGACAC
* * *
98885793 CATGTCCCAGACATGGTCTTACACT-G-ACACATCTCGTAGCCGATGCATGTCCCAGGCGTGTCT
1 CATGT-CCAGACAT-GTCTTACACTAGCACACATCTCATAGCCGATGCATGTCCCAGACATGTCT
* * *
98885856 TACACTAGCTTACGTCTCGAGGCCAATG
64 TACACTAGCTTACATATCGAGGCCAATA
*
98885884 CATGTCTCAGACATGTCTTACACTAGCACTCATCTCAATA-CCGATGCCATGTCCCAGACATGGT
1 CATGTC-CAGACATGTCTTACACTAGCACACATCTC-ATAGCCGATG-CATGTCCCAGACAT-GT
* *
98885948 CTTACACTAGCTCT-CATAAT-GTGGCCGATA
62 CTTACACTAGCT-TACAT-ATCGAGGCCAATA
98885978 CATGTCCAAGACATGTCTTACACTAGC
1 CATGTCC-AGACATGTCTTACACTAGC
98886005 TTACACAAGT
Statistics
Matches: 103, Mismatches: 9, Indels: 15
0.81 0.07 0.12
Matches are distributed among these distances:
90 11 0.11
91 13 0.13
92 14 0.14
93 15 0.15
94 48 0.47
95 2 0.02
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (91 bp):
CATGTCCAGACATGTCTTACACTAGCACACATCTCATAGCCGATGCATGTCCCAGACATGTCTTA
CACTAGCTTACATATCGAGGCCAATA
Found at i:98889706 original size:296 final size:296
Alignment explanation
Indices: 98889172--98889763 Score: 1166
Period size: 296 Copynumber: 2.0 Consensus size: 296
98889162 AGGAGCCCAA
98889172 TGGTGTTCTAGATTTCTAAATTGTAAGGCTTTTTTGTCCAACTAACATTGGTATAAAAAATTGTT
1 TGGTGTTCTAGATTTCTAAATTGTAAGGCTTTTTTGTCCAACTAACATTGGTATAAAAAATTGTT
98889237 GGCGAAAATGACAAAAGAGTTGTAGGAGAAACAGTCCAGACCTTCGGTGGCCAAATCTCTCTCTC
66 GGCGAAAATGACAAAAGAGTTGTAGGAGAAACAGTCCAGACCTTCGGTGGCCAAATCTCTCTCTC
98889302 TCAAATTTACGTTTGAGATATTTATCAGCTAATATGTATCTCTGTGGCTAAGAAAGGGAGAGTTT
131 TCAAATTTACGTTTGAGATATTTATCAGCTAATATGTATCTCTGTGGCTAAGAAAGGGAGAGTTT
98889367 GGATAAGCCCTTCATGGCTTAGTTTTCTTCTCATCACCATCCCCCAATTCACCATCCTTACTCGT
196 GGATAAGCCCTTCATGGCTTAGTTTTCTTCTCATCACCATCCCCCAATTCACCATCCTTACTCGT
98889432 TAGAGACACACAGCATTATTGCATTGGGACAAAGGC
261 TAGAGACACACAGCATTATTGCATTGGGACAAAGGC
98889468 TGGTGTTCTAGATTTCTAAATTGTAAGGCTTTTTTGTCCAACTAACATTGGTATAAAAAATTGTT
1 TGGTGTTCTAGATTTCTAAATTGTAAGGCTTTTTTGTCCAACTAACATTGGTATAAAAAATTGTT
*
98889533 GGCGAAAATGACACAAGAGTTGTAGGAGAAACAGTCCAGACCTTCGGTGGCCAAATCTCTCTCTC
66 GGCGAAAATGACAAAAGAGTTGTAGGAGAAACAGTCCAGACCTTCGGTGGCCAAATCTCTCTCTC
98889598 TCAAATTTACGTTTGAGATATTTATCAGCTAATATGTATCTCTGTGGCTAAGAAAGGGAGAGTTT
131 TCAAATTTACGTTTGAGATATTTATCAGCTAATATGTATCTCTGTGGCTAAGAAAGGGAGAGTTT
98889663 GGATAAGCCCTTCATGGCTTAGTTTTCTTCTCATCACCATCCCCCAATTCACCATCCTTACTCGT
196 GGATAAGCCCTTCATGGCTTAGTTTTCTTCTCATCACCATCCCCCAATTCACCATCCTTACTCGT
*
98889728 TAGAGACGCACAGCATTATTGCATTGGGACAAAGGC
261 TAGAGACACACAGCATTATTGCATTGGGACAAAGGC
98889764 CAGTGTCTTA
Statistics
Matches: 294, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
296 294 1.00
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (296 bp):
TGGTGTTCTAGATTTCTAAATTGTAAGGCTTTTTTGTCCAACTAACATTGGTATAAAAAATTGTT
GGCGAAAATGACAAAAGAGTTGTAGGAGAAACAGTCCAGACCTTCGGTGGCCAAATCTCTCTCTC
TCAAATTTACGTTTGAGATATTTATCAGCTAATATGTATCTCTGTGGCTAAGAAAGGGAGAGTTT
GGATAAGCCCTTCATGGCTTAGTTTTCTTCTCATCACCATCCCCCAATTCACCATCCTTACTCGT
TAGAGACACACAGCATTATTGCATTGGGACAAAGGC
Found at i:98896011 original size:29 final size:28
Alignment explanation
Indices: 98895970--98896025 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 28
98895960 TTTAAATTTA
98895970 AAAAATAAAAAGACTAAATTCTTAAAAAT
1 AAAAATAAAAAGACTAAATTC-TAAAAAT
** *
98895999 AAAAATATGAAGATTAAATTCTAAAAA
1 AAAAATAAAAAGACTAAATTCTAAAAA
98896026 GGCAAAGATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 6 0.25
29 18 0.75
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.25
Consensus pattern (28 bp):
AAAAATAAAAAGACTAAATTCTAAAAAT
Found at i:98909693 original size:36 final size:36
Alignment explanation
Indices: 98909649--98909725 Score: 120
Period size: 36 Copynumber: 2.2 Consensus size: 36
98909639 TATTAATGCA
* *
98909649 TTAT-TAGTTTGTATTGTAACTGTGTTTGTCTGTTC
1 TTATCTAGTTTGTACTGTAACTATGTTTGTCTGTTC
*
98909684 TTATCTAGTTTGTACTGTAACTATGTTTGTCTTTTC
1 TTATCTAGTTTGTACTGTAACTATGTTTGTCTGTTC
98909720 TTATCT
1 TTATCT
98909726 TCTTTGCCTA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
35 4 0.11
36 34 0.89
ACGTcount: A:0.16, C:0.12, G:0.16, T:0.57
Consensus pattern (36 bp):
TTATCTAGTTTGTACTGTAACTATGTTTGTCTGTTC
Found at i:98914601 original size:12 final size:12
Alignment explanation
Indices: 98914584--98914608 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
98914574 AAATGGGCTA
98914584 TTACAATTAAAT
1 TTACAATTAAAT
98914596 TTACAATTAAAT
1 TTACAATTAAAT
98914608 T
1 T
98914609 CAAGATAGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (12 bp):
TTACAATTAAAT
Found at i:98914966 original size:19 final size:19
Alignment explanation
Indices: 98914930--98914968 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
98914920 CCTATATCTC
* * *
98914930 AAATATATACAAATCTCAT
1 AAATAAATAAAAAACTCAT
98914949 AAATAAATAAAAAACTCAT
1 AAATAAATAAAAAACTCAT
98914968 A
1 A
98914969 TATTAAAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.62, C:0.13, G:0.00, T:0.26
Consensus pattern (19 bp):
AAATAAATAAAAAACTCAT
Found at i:98915774 original size:322 final size:319
Alignment explanation
Indices: 98915159--98915793 Score: 837
Period size: 322 Copynumber: 2.0 Consensus size: 319
98915149 TCGACTTGAG
* *
98915159 TCATATCTTTAAAAAATTTAGATATGAAAATTTCATAAAAAAAAAATCTTAAAATCTATAGAGGA
1 TCATATCTTTAAAAAATTAAGATATGAAAATTTCAT--AAAAAAAATCTTAAAATCTACAGAGGA
*
98915224 AGTAACCTTCGACATTGAGGAGGACTGCAATTTCGAGAGCTACCGCTACGAGAAAGAGAGGAAGA
64 AGTAACCTTCGACATTGA-GAGGACTACAATTTCGAGAGCTACCGCTACGAGAAAGAGAGGAAGA
* * ** *
98915289 AGAGAAAGATCTGGAGCAAGAATGAGAGCTAGACAAGGAAGCAAATCTAGAGTAGGACACGGAGT
128 AGAGAAAGATCTGGAGCAAGAACGAGAGCTAGACAAGGAAGCAAATCTAGAGCAGGACACAAAGC
* * *
98915354 GAGAGCGAGAATTGGACTTAGAGTTTGAACCGGAATAAGAGTAGGAACAAGACCTAGACCGTAAA
193 GAGAGCGAGAATTGGACTTAGAGTCTGAACCGAAATAAGAGGAGGAACAAGACCTAGACCGTAAA
* *
98915419 CAAGAACAGGAAGAGGAACCGGAGTTGGAGACAAAACGAGAACGACGACCTCTCAGCTAGAT
258 CAAGAACAGGAAAAGGAACCAGAGTTGGAGACAAAACGAGAACGACGACCTCTCAGCTAGAT
*
98915481 TCATATCTTTAAAAAATTAAGATATGAAAATTTCAT-TAAAAAATCTTAAAATCTACAGAGGAAG
1 TCATATCTTTAAAAAATTAAGATATGAAAATTTCATAAAAAAAATCTTAAAATCTACAGAGGAAG
* ** * * * * *
98915545 TAACCTTTGATGTT-A-AGGATTACGATTTCGAGAGCTACCGCTACTAGAAGGAGAGGAAGAGGA
66 TAACCTTCGACATTGAGAGGACTACAATTTCGAGAGCTACCGCTACGAGAAAGAGAGGAAGAAGA
* ** * * *
98915608 GAAAGATCTGGAGCGAGAACGAGAGCTAGACGGGGAAGCAGATCTGGAGCGGGACACAAAGCGAG
131 GAAAGATCTGGAGCAAGAACGAGAGCTAGACAAGGAAGCAAATCTAGAGCAGGACACAAAGCGAG
* * * * *
98915673 AGCGAGAATTGGATTTGGATTTGGAGTCTGAATCGAAATAAGAGCGA-GAGCTAGACCTAGACTG
196 AGCGAGAATTGGACTT--A----GAGTCTGAACCGAAATAAGAG-GAGGAACAAGACCTAGACCG
* *
98915737 TGAACAAGAACAGGAAAAGGAACCAGAGTTGGAGACAAAACGAGAACGACGATCTCT
254 TAAACAAGAACAGGAAAAGGAACCAGAGTTGGAGACAAAACGAGAACGACGACCTCT
98915794 TGTTGGCTTT
Statistics
Matches: 271, Mismatches: 35, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
316 111 0.41
318 2 0.01
319 37 0.14
322 120 0.44
323 1 0.00
ACGTcount: A:0.41, C:0.14, G:0.26, T:0.19
Consensus pattern (319 bp):
TCATATCTTTAAAAAATTAAGATATGAAAATTTCATAAAAAAAATCTTAAAATCTACAGAGGAAG
TAACCTTCGACATTGAGAGGACTACAATTTCGAGAGCTACCGCTACGAGAAAGAGAGGAAGAAGA
GAAAGATCTGGAGCAAGAACGAGAGCTAGACAAGGAAGCAAATCTAGAGCAGGACACAAAGCGAG
AGCGAGAATTGGACTTAGAGTCTGAACCGAAATAAGAGGAGGAACAAGACCTAGACCGTAAACAA
GAACAGGAAAAGGAACCAGAGTTGGAGACAAAACGAGAACGACGACCTCTCAGCTAGAT
Found at i:98922462 original size:26 final size:26
Alignment explanation
Indices: 98922429--98922480 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
98922419 AGTAATAACA
98922429 TTTTTTGAA-ATAATATGTTGACTTTT
1 TTTTTTGAACA-AATATGTTGACTTTT
*
98922455 TTTTTTGAACGAAATATGTTGGCTTT
1 TTTTTTGAAC-AAATATGTTGACTTT
98922481 ATTAATAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 9 0.39
27 13 0.57
28 1 0.04
ACGTcount: A:0.25, C:0.06, G:0.15, T:0.54
Consensus pattern (26 bp):
TTTTTTGAACAAATATGTTGACTTTT
Found at i:98923568 original size:15 final size:15
Alignment explanation
Indices: 98923548--98923580 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
98923538 TAATCTTTTA
98923548 AAATTA-TAAAAATAT
1 AAATTATTAAAAAT-T
98923563 AAATTATTAAAAATT
1 AAATTATTAAAAATT
98923578 AAA
1 AAA
98923581 ATTCAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AAATTATTAAAAATT
Found at i:98923582 original size:16 final size:15
Alignment explanation
Indices: 98923545--98923583 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
98923535 ATTTAATCTT
98923545 TTAAAATTATAAAAA
1 TTAAAATTATAAAAA
98923560 -TATAAATTATTAAAAA
1 TTA-AAATTA-TAAAAA
98923576 TTAAAATT
1 TTAAAATT
98923584 CAATTTTGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 2 0.10
15 6 0.29
16 11 0.52
17 2 0.10
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
TTAAAATTATAAAAA
Found at i:98933350 original size:38 final size:38
Alignment explanation
Indices: 98933308--98933387 Score: 142
Period size: 38 Copynumber: 2.1 Consensus size: 38
98933298 TGGACTAGAC
*
98933308 TTGACAGTATATCAGATGGGAACCAAGAAAAATAGATA
1 TTGACAGTATATCAGATAGGAACCAAGAAAAATAGATA
*
98933346 TTGACAGTATATCAGATAGGAACCAAGAAAAATAGATC
1 TTGACAGTATATCAGATAGGAACCAAGAAAAATAGATA
98933384 TTGA
1 TTGA
98933388 ATCTGTTTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.46, C:0.11, G:0.20, T:0.23
Consensus pattern (38 bp):
TTGACAGTATATCAGATAGGAACCAAGAAAAATAGATA
Found at i:98933436 original size:29 final size:29
Alignment explanation
Indices: 98933403--98933462 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
98933393 TTTATGGATT
98933403 TATTCACTTGTGATGTTCATAATGTGGCA
1 TATTCACTTGTGATGTTCATAATGTGGCA
98933432 TATTCACTTGTGATGTTCATAATGTGGCA
1 TATTCACTTGTGATGTTCATAATGTGGCA
98933461 TA
1 TA
98933463 CATAAATCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.25, C:0.13, G:0.20, T:0.42
Consensus pattern (29 bp):
TATTCACTTGTGATGTTCATAATGTGGCA
Found at i:98934159 original size:58 final size:57
Alignment explanation
Indices: 98934094--98934211 Score: 148
Period size: 57 Copynumber: 2.1 Consensus size: 57
98934084 AAAGAAGGTG
* * * *
98934094 AAATGGAGAAATAAGAAA-CATTTGGAAATGATTAAGGTTTTATCCAAAATGAAAATGA
1 AAATGGAGAAAT--GAAATCATTTGAAAATAAATAAGATTTTATCCAAAATGAAAATGA
** *
98934152 AAATGGAGAAATGAAATCATTTGAAAATAAATGTGATTTTCTCCAAAATGAAAATGA
1 AAATGGAGAAATGAAATCATTTGAAAATAAATAAGATTTTATCCAAAATGAAAATGA
98934209 AAA
1 AAA
98934212 ATGAAATTAT
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
56 4 0.08
57 36 0.69
58 12 0.23
ACGTcount: A:0.51, C:0.06, G:0.17, T:0.26
Consensus pattern (57 bp):
AAATGGAGAAATGAAATCATTTGAAAATAAATAAGATTTTATCCAAAATGAAAATGA
Found at i:98935132 original size:28 final size:28
Alignment explanation
Indices: 98935076--98935128 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
98935066 ATTTTTCCAA
* *
98935076 CCCCTCCCCCATCCCTCCCCTCTCCTCC
1 CCCCACCCCCATCCATCCCCTCTCCTCC
*
98935104 CCCCACCCCCAT-CATCCCCTTTCCT
1 CCCCACCCCCATCCATCCCCTCTCCT
98935129 TCCCTCTCTC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 11 0.50
28 11 0.50
ACGTcount: A:0.08, C:0.70, G:0.00, T:0.23
Consensus pattern (28 bp):
CCCCACCCCCATCCATCCCCTCTCCTCC
Found at i:98936324 original size:22 final size:22
Alignment explanation
Indices: 98936312--98936353 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
98936302 AAATATATAT
*
98936312 TTTCTTTTTTAAATATATAAGC
1 TTTCCTTTTTAAATATATAAGC
98936334 TTTCCTTTTTAAATATATAA
1 TTTCCTTTTTAAATATATAA
98936354 TATGACCACT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.33, C:0.10, G:0.02, T:0.55
Consensus pattern (22 bp):
TTTCCTTTTTAAATATATAAGC
Found at i:98936327 original size:20 final size:21
Alignment explanation
Indices: 98936302--98936352 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 21
98936292 AGAAAGTTAA
* *
98936302 AAATATATA-TTTTCTTTTTT
1 AAATATATAGCTTTCCTTTTT
98936322 AAATATATAAGCTTTCCTTTTT
1 AAATATAT-AGCTTTCCTTTTT
98936344 AAATATATA
1 AAATATATA
98936353 ATATGACCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 8 0.30
21 2 0.07
22 17 0.63
ACGTcount: A:0.37, C:0.08, G:0.02, T:0.53
Consensus pattern (21 bp):
AAATATATAGCTTTCCTTTTT
Found at i:98938302 original size:21 final size:21
Alignment explanation
Indices: 98938278--98938318 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
98938268 TTATGTTTAA
*
98938278 TAGATATGTGTAAAAAAAATT
1 TAGATATGTCTAAAAAAAATT
* *
98938299 TAGATTTTTCTAAAAAAAAT
1 TAGATATGTCTAAAAAAAAT
98938319 ACTATTTTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.51, C:0.02, G:0.10, T:0.37
Consensus pattern (21 bp):
TAGATATGTCTAAAAAAAATT
Found at i:98939409 original size:12 final size:12
Alignment explanation
Indices: 98939392--98939425 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
98939382 TATTCAACAA
98939392 GTTCACCTCTGG
1 GTTCACCTCTGG
98939404 GTTCACCTCTGG
1 GTTCACCTCTGG
98939416 GTTCACCTCT
1 GTTCACCTCT
98939426 TTGTCACAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.09, C:0.35, G:0.21, T:0.35
Consensus pattern (12 bp):
GTTCACCTCTGG
Found at i:98944653 original size:14 final size:14
Alignment explanation
Indices: 98944630--98944668 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
98944620 TGTTACTATG
*
98944630 TTTTAGTTTTAGAC
1 TTTTACTTTTAGAC
*
98944644 TTTTACTTTTAGAT
1 TTTTACTTTTAGAC
*
98944658 TTTTATTTTTA
1 TTTTACTTTTA
98944669 TTTATTAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.21, C:0.05, G:0.08, T:0.67
Consensus pattern (14 bp):
TTTTACTTTTAGAC
Found at i:98944720 original size:18 final size:18
Alignment explanation
Indices: 98944697--98944734 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
98944687 ATTTTTATGA
*
98944697 TTGGGTTGGTTAATTGGG
1 TTGGGTTGGGTAATTGGG
*
98944715 TTGGGTTGGGTACTTGGG
1 TTGGGTTGGGTAATTGGG
98944733 TT
1 TT
98944735 TGTATATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.08, C:0.03, G:0.45, T:0.45
Consensus pattern (18 bp):
TTGGGTTGGGTAATTGGG
Found at i:98946007 original size:30 final size:30
Alignment explanation
Indices: 98945973--98946031 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
98945963 TTTACGAGCC
* *
98945973 TAGGGGCCAAAATGTAAATATGTGAAAGTT
1 TAGGGGCCAAAATATAAATATGTAAAAGTT
* *
98946003 TAGGGGTCAAAATATAAATTTGTAAAAGT
1 TAGGGGCCAAAATATAAATATGTAAAAGT
98946032 ATGATTTTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.42, C:0.05, G:0.24, T:0.29
Consensus pattern (30 bp):
TAGGGGCCAAAATATAAATATGTAAAAGTT
Found at i:98946728 original size:50 final size:50
Alignment explanation
Indices: 98946647--98946980 Score: 298
Period size: 50 Copynumber: 6.6 Consensus size: 50
98946637 TTTGTTGTGA
* *
98946647 GTCACGTGTGTAGTACTAAGTGCTGGCTACTACGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * ** * *
98946697 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATAGCC-G-TTAACTTCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATTGA--TAG
* * ** * * * *
98946748 ATCACGTGTGTAGTACTAAGTATAGGCTACTACGTGTATCAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
*
98946798 GTCACGTGTGTAGTACTAAGTGC-GGACTACTACGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGG-CTACTACGTGTACCAGATTGATAG
* * * * * * * *
98946848 TTCGCATGTGTAGTACTAAGTACAGGCTACTATGCGTACCCG-TTAACTTCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAG
* * * *
98946899 ATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGGTAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
** *
98946949 GTCGTATGTGTAGTACTAAGTCCAGGCTACTA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTA
98946981 TGCATACCAG
Statistics
Matches: 219, Mismatches: 55, Indels: 20
0.74 0.19 0.07
Matches are distributed among these distances:
49 8 0.04
50 135 0.62
51 73 0.33
52 3 0.01
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (50 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
Found at i:98946828 original size:101 final size:101
Alignment explanation
Indices: 98946648--98946829 Score: 269
Period size: 101 Copynumber: 1.8 Consensus size: 101
98946638 TTGTTGTGAG
* * * *
98946648 TCACGTGTGTAGTACTAAGTGCTGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGATGGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGTAC
98946713 TAAGTGCAGGCTACTATGCATAGCCGTTAACTTCGA
66 TAAGTGCAGGCTACTATGCATAGCCGTTAACTTCGA
* * *
98946749 TCACGTGTGTAGTACTAAGT-ATAGGCTACTACGTGTATCAGATGGTTAAGTCACGTGTGTAGTA
1 TCACGTGTGTAGTACTAAGTGAT-GGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGTA
98946813 CTAAGTGC-GGACTACTA
65 CTAAGTGCAGG-CTACTA
98946830 CGTGTACCAG
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
100 3 0.04
101 69 0.96
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGATGGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGTAC
TAAGTGCAGGCTACTATGCATAGCCGTTAACTTCGA
Found at i:98946904 original size:101 final size:101
Alignment explanation
Indices: 98946799--98946988 Score: 310
Period size: 101 Copynumber: 1.9 Consensus size: 101
98946789 GATGGTTAAG
* *
98946799 TCACGTGTGTAGTACTAAGTG-CGGACTACTACGTGTACCAGATTGATAGTTCGCATGTGTAGTA
1 TCACGTGTGTAGTACTAAGTGTAGG-CTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTA
*
98946863 CTAAGTACAGGCTACTATGCGTACCCGTTAACTTCGA
65 CTAAGTACAGGCTACTATGCATACCCGTTAACTTCGA
* *
98946900 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGGTAGGTCGTATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
*
98946965 TAAGTCCAGGCTACTATGCATACC
66 TAAGTACAGGCTACTATGCATACC
98946989 AGAGAGCTTC
Statistics
Matches: 82, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
101 80 0.98
102 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
TAAGTACAGGCTACTATGCATACCCGTTAACTTCGA
Found at i:98946925 original size:151 final size:151
Alignment explanation
Indices: 98946646--98946980 Score: 530
Period size: 151 Copynumber: 2.2 Consensus size: 151
98946636 ATTTGTTGTG
98946646 AGTCACGTGTGTAGTACTAAGTGCTGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCTGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
* *
98946711 ACTAAGTGCAGGCTACTATGCATAGCCGTTAACTTCGATCACGTGTGTAGTACTAAGTATAGGCT
66 ACTAAGTACAGGCTACTATGCATACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTATAGGCT
*
98946776 ACTACGTGTATCAGA-TGGTTA
131 ACTACGTGTACCAGATTGG-TA
*
98946797 AGTCACGTGTGTAGTACTAAGTGC-GGACTACTACGTGTACCAGATTGATAGTTCGCATGTGTAG
1 AGTCACGTGTGTAGTACTAAGTGCTGG-CTACTACGTGTACCAGATTGATAGGTCGCATGTGTAG
* *
98946861 TACTAAGTACAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGTAGGC
65 TACTAAGTACAGGCTACTATGCATACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTATAGGC
98946926 TACTACGTGTACCAGATTGGTA
130 TACTACGTGTACCAGATTGGTA
* *** * *
98946948 GGTCGTATGTGTAGTACTAAGTCCAGGCTACTA
1 AGTCACGTGTGTAGTACTAAGTGCTGGCTACTA
98946981 TGCATACCAG
Statistics
Matches: 170, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
150 2 0.01
151 163 0.96
152 5 0.03
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (151 bp):
AGTCACGTGTGTAGTACTAAGTGCTGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
ACTAAGTACAGGCTACTATGCATACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTATAGGCT
ACTACGTGTACCAGATTGGTA
Found at i:98950129 original size:20 final size:20
Alignment explanation
Indices: 98950104--98950147 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
98950094 GAGGCAAAGC
*
98950104 ACACGCCTGTGTGCTTGGGG
1 ACACGCCTGTGTGCTTAGGG
98950124 ACACGCCTGTGTGCTTAGGG
1 ACACGCCTGTGTGCTTAGGG
98950144 ACAC
1 ACAC
98950148 ACCCGTGTCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.16, C:0.27, G:0.34, T:0.23
Consensus pattern (20 bp):
ACACGCCTGTGTGCTTAGGG
Found at i:98950155 original size:20 final size:20
Alignment explanation
Indices: 98950112--98950155 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
98950102 GCACACGCCT
* * *
98950112 GTGTGCTTGGGGACACGCCT
1 GTGTGCTTAGGGACACACCC
98950132 GTGTGCTTAGGGACACACCC
1 GTGTGCTTAGGGACACACCC
98950152 GTGT
1 GTGT
98950156 CCTTCACCCG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.14, C:0.25, G:0.36, T:0.25
Consensus pattern (20 bp):
GTGTGCTTAGGGACACACCC
Found at i:98950266 original size:28 final size:29
Alignment explanation
Indices: 98950212--98950267 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
98950202 TACAGGGGTT
98950212 TTCACACGGCCAAGCACACGCCCGTGTCC
1 TTCACACGGCCAAGCACACGCCCGTGTCC
* *
98950241 TTCACACGGCCTAG-ACACGCTCGTGTC
1 TTCACACGGCCAAGCACACGCCCGTGTC
98950268 GTCGCTCGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 12 0.48
29 13 0.52
ACGTcount: A:0.20, C:0.41, G:0.21, T:0.18
Consensus pattern (29 bp):
TTCACACGGCCAAGCACACGCCCGTGTCC
Found at i:98969704 original size:92 final size:88
Alignment explanation
Indices: 98969591--98969764 Score: 240
Period size: 92 Copynumber: 1.9 Consensus size: 88
98969581 AAAAATTAAG
* * * *
98969591 TCTCTTTTTTTTCACTCAATTGAGCACTTGAACTTTTAAAATGTATCAAAAGGACCCTCAAAATT
1 TCTCTTTTTTTTCACTCAATTGAGCACTTGAACTTTCAAAATGCATCAAAA-AACACTCAAAATT
98969656 CTTCAAAAAAAGCAATTAAGCCCTT
65 CTTC-AAAAAAGCAATTAAGCCCTT
* *
98969681 TCTCTTTTTTTTTCCACTCAATTGGGTACTTGAACTTTCAAAATGCATCAAAAAACACTCAAAAT
1 TCTC-TTTTTTTT-CACTCAATTGAGCACTTGAACTTTCAAAATGCATCAAAAAACACTCAAAAT
* *
98969746 TTTTCATAAAAGCAATTAA
64 TCTTCAAAAAAGCAATTAA
98969765 ACCCCTGCTC
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
90 17 0.23
91 22 0.30
92 35 0.47
ACGTcount: A:0.36, C:0.20, G:0.08, T:0.36
Consensus pattern (88 bp):
TCTCTTTTTTTTCACTCAATTGAGCACTTGAACTTTCAAAATGCATCAAAAAACACTCAAAATTC
TTCAAAAAAGCAATTAAGCCCTT
Found at i:98969807 original size:6 final size:7
Alignment explanation
Indices: 98969790--98969818 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
98969780 AAAACTTTAA
98969790 AAAAATT
1 AAAAATT
98969797 AAAAATT
1 AAAAATT
98969804 AAAAATT
1 AAAAATT
98969811 AAAAATT
1 AAAAATT
98969818 A
1 A
98969819 TTAAATTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (7 bp):
AAAAATT
Found at i:98969855 original size:28 final size:29
Alignment explanation
Indices: 98969804--98969864 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
98969794 ATTAAAAATT
*
98969804 AAAAATTAAAAATTATTAA-ATTTTAATA
1 AAAAATTAAAAAATATTAATATTTTAATA
* *
98969832 AAAAATATAAAAAATA-TAATTTTTTTATA
1 AAAAAT-TAAAAAATATTAATATTTTAATA
98969861 AAAA
1 AAAA
98969865 TCGTAAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 9 0.32
29 19 0.68
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (29 bp):
AAAAATTAAAAAATATTAATATTTTAATA
Found at i:98969878 original size:36 final size:36
Alignment explanation
Indices: 98969829--98969910 Score: 101
Period size: 36 Copynumber: 2.2 Consensus size: 36
98969819 TTAAATTTTA
* **
98969829 ATAAAAAATATAAAAAATATAATTTTTTTATAAAAATC
1 ATAAAAAATA-AAAAATTATAA-AATTTTATAAAAATC
* *
98969867 GTAAAAAATAAAAAATTGTAAAATTTTATAAAAATC
1 ATAAAAAATAAAAAATTATAAAATTTTATAAAAATC
98969903 ATAAAAAA
1 ATAAAAAA
98969911 ATTAATGACC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
36 20 0.53
37 9 0.24
38 9 0.24
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.32
Consensus pattern (36 bp):
ATAAAAAATAAAAAATTATAAAATTTTATAAAAATC
Found at i:98970132 original size:10 final size:10
Alignment explanation
Indices: 98970119--98970183 Score: 55
Period size: 10 Copynumber: 6.5 Consensus size: 10
98970109 TTTATAAAAA
98970119 TTTTATAATT
1 TTTTATAATT
98970129 TTTTAT-A-T
1 TTTTATAATT
* *
98970137 TTCTAT-ATA
1 TTTTATAATT
98970146 TTTTATAATT
1 TTTTATAATT
98970156 TTTTACGATAATT
1 TTTT---ATAATT
*
98970169 TTTTCTAATT
1 TTTTATAATT
98970179 TTTTA
1 TTTTA
98970184 ATTTTTGAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
8 7 0.16
9 6 0.14
10 21 0.48
13 10 0.23
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.66
Consensus pattern (10 bp):
TTTTATAATT
Found at i:98970138 original size:27 final size:27
Alignment explanation
Indices: 98970108--98970160 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
98970098 TTTCTTAAGA
98970108 ATTTATAAAAATTTTATAATTTTTTAT
1 ATTTATAAAAATTTTATAATTTTTTAT
* * *
98970135 ATTTCTATATATTTTATAATTTTTTA
1 ATTTATAAAAATTTTATAATTTTTTA
98970161 CGATAATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (27 bp):
ATTTATAAAAATTTTATAATTTTTTAT
Found at i:98974238 original size:4 final size:4
Alignment explanation
Indices: 98974229--98974265 Score: 58
Period size: 4 Copynumber: 9.5 Consensus size: 4
98974219 TGTTTTCTTT
*
98974229 TTTA TTTA TTTA TTTA TTTA TTTA -TTA TTTC TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
98974266 CTTTCTCATG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 3 0.10
4 27 0.90
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:98974270 original size:11 final size:11
Alignment explanation
Indices: 98974222--98974271 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
98974212 ATTAAACTGT
*
98974222 TTTCTTTTTTA
1 TTTCTTTATTA
*
98974233 TTTATTTATTTA
1 TTTCTTTA-TTA
*
98974245 TTTATTTATTA
1 TTTCTTTATTA
*
98974256 TTTCTTTATTC
1 TTTCTTTATTA
98974267 TTTCT
1 TTTCT
98974272 CATGTATTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
11 23 0.68
12 11 0.32
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTCTTTATTA
Found at i:98974395 original size:4 final size:4
Alignment explanation
Indices: 98974386--98974411 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
98974376 TATTACTTAT
98974386 TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TT
98974412 CTTTTACTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:98974527 original size:63 final size:62
Alignment explanation
Indices: 98974392--98974545 Score: 168
Period size: 62 Copynumber: 2.5 Consensus size: 62
98974382 TTATTTTATT
* * ** *
98974392 TATTTATTTATTTATTTATTCTTTTACTTTTAAAATACTTAAATTTAATATTATTTTTTTGCC
1 TATTCATTTATTTA-TTATTCTTTTATTTTTAAAATACTTAAATTTAATATTATTTACTTCCC
* * * *
98974455 TATTTATTTATTTATTATTCTTTTATTTTTTAAATATTTAAATTTGATATTACTTATACTTCCC
1 TATTCATTTATTTATTATTCTTTTATTTTTAAAATACTTAAATTTAATATTA-TT-TACTTCCC
*
98974519 T-TTCATTTAATTTTTTATT-TTTTATTT
1 TATTCATTT-ATTTATTATTCTTTTATTT
98974546 CAAAGTTACT
Statistics
Matches: 79, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
62 34 0.43
63 30 0.38
64 15 0.19
ACGTcount: A:0.27, C:0.08, G:0.01, T:0.64
Consensus pattern (62 bp):
TATTCATTTATTTATTATTCTTTTATTTTTAAAATACTTAAATTTAATATTATTTACTTCCC
Found at i:98978482 original size:18 final size:18
Alignment explanation
Indices: 98978459--98978516 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
98978449 TTTGTTTATT
98978459 GTTATTCAATAACAATCA
1 GTTATTCAATAACAATCA
* * * *
98978477 GTTATTTAGTATCAAAC-
1 GTTATTCAATAACAATCA
98978494 G--A-TCAATAACAATCA
1 GTTATTCAATAACAATCA
98978509 GTTATTCA
1 GTTATTCA
98978517 GTCCAGTAAT
Statistics
Matches: 28, Mismatches: 8, Indels: 8
0.64 0.18 0.18
Matches are distributed among these distances:
14 8 0.29
15 2 0.07
17 2 0.07
18 16 0.57
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.34
Consensus pattern (18 bp):
GTTATTCAATAACAATCA
Found at i:98979134 original size:21 final size:24
Alignment explanation
Indices: 98979110--98979162 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 24
98979100 TAGCTATAGA
*
98979110 AATTAAA-A-TAATTAT-ACCATT
1 AATTAAACACTAATTATAACAATT
*
98979131 AATTACAACACTCATTATAACAATT
1 AATTA-AACACTAATTATAACAATT
98979156 AATTAAA
1 AATTAAA
98979163 TTTCTATTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 5 0.19
22 2 0.08
23 1 0.04
24 8 0.31
25 10 0.38
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.34
Consensus pattern (24 bp):
AATTAAACACTAATTATAACAATT
Found at i:98979834 original size:5 final size:5
Alignment explanation
Indices: 98979826--98979875 Score: 82
Period size: 5 Copynumber: 9.6 Consensus size: 5
98979816 TTATTTTATA
98979826 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAATTT ATAAT ATA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAA--T ATAAT ATA
98979876 CTTTTTATCT
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
5 38 0.88
7 5 0.12
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
ATAAT
Found at i:98979906 original size:16 final size:16
Alignment explanation
Indices: 98979887--98979927 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
98979877 TTTTTATCTA
*
98979887 ATTAATATAATATTTT
1 ATTAATATAATAATTT
*
98979903 ATTAAAATAATAATTT
1 ATTAATATAATAATTT
98979919 ATT-ATATAA
1 ATTAATATAA
98979928 AATATCTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
15 5 0.23
16 17 0.77
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
ATTAATATAATAATTT
Found at i:98979983 original size:221 final size:223
Alignment explanation
Indices: 98979667--98980077 Score: 492
Period size: 221 Copynumber: 1.9 Consensus size: 223
98979657 TATTTACTTT
* * *
98979667 ATATTATATTATATTTAATTAATAATTAATAATTATAAAATATCTTTATACTTAAATTATAAGTA
1 ATATAATATTATATTAAAATAATAATTAATAATTATAAAATATCTTTATACTTAAATTATAAGTA
* ** * * * * * * * * * *
98979732 AATTATGTATTTAAATTACAATTGTACAAATATGATTTTTTACGCATGTATATTTTTATTACCAT
66 AAATATACAATTAAATTACAAGTATACAAATA-CATATATTACACATGTACAATTTTATCACCAT
* *
98979797 ACATTTGT-TACAATTCAATTTATTTTATAATAAT-ATAATATAATATAATATAATATAATATAA
130 ACATTTGTCTACAATTCAATTTATTTAATAATAATAACAATATAAT-TAATATAATA-AATATAA
98979860 TATAATTTATAATATACTTTTTATCTAATTA
193 TATAATTTATAATATACTTTTTATCTAATTA
* * *
98979891 ATATAATATTTTATTAAAATAATAATTTATTA-TATAAAATATCTTT-TACTTAAAATT-TAAG-
1 ATATAATATTATATTAAAATAATAATTAATAATTATAAAATATCTTTATACTT-AAATTATAAGT
* *
98979952 AAAATATACAATTATATTACAAGTATACAAATACATATATTACACATGTACAATTTTATCATCAT
65 AAAATATACAATTAAATTACAAGTATACAAATACATATATTACACATGTACAATTTTATCACCAT
** * * *
98980017 ACATTTGTCTTTATTTTAATTTATTTAATAATAATAACAATATAATTAATCTAATAAATAT
130 ACATTTGTCTACAATTCAATTTATTTAATAATAATAACAATATAATTAATATAATAAATAT
98980078 CATGTAAAAA
Statistics
Matches: 156, Mismatches: 28, Indels: 10
0.80 0.14 0.05
Matches are distributed among these distances:
220 37 0.24
221 56 0.36
222 18 0.12
223 19 0.12
224 26 0.17
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.46
Consensus pattern (223 bp):
ATATAATATTATATTAAAATAATAATTAATAATTATAAAATATCTTTATACTTAAATTATAAGTA
AAATATACAATTAAATTACAAGTATACAAATACATATATTACACATGTACAATTTTATCACCATA
CATTTGTCTACAATTCAATTTATTTAATAATAATAACAATATAATTAATATAATAAATATAATAT
AATTTATAATATACTTTTTATCTAATTA
Found at i:98980873 original size:19 final size:19
Alignment explanation
Indices: 98980849--98980893 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
98980839 AATGCTTCTT
98980849 TTTGCATT-CATTCCATGCA
1 TTTGCATTACATTCCAT-CA
*
98980868 TTTGCATTACATTGCATCA
1 TTTGCATTACATTCCATCA
*
98980887 TATGCAT
1 TTTGCAT
98980894 CAAATTTCAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.24, C:0.22, G:0.11, T:0.42
Consensus pattern (19 bp):
TTTGCATTACATTCCATCA
Found at i:98999475 original size:89 final size:89
Alignment explanation
Indices: 98999331--98999830 Score: 347
Period size: 89 Copynumber: 5.6 Consensus size: 89
98999321 ATGGAAGTCG
* * * * * *
98999331 TAGCGAATCTTATCT-TCCTGAAGTTG-TGTGGAGTAGATTAAAGCCACAAATCTTATCTTCTTG
1 TAGCAAATCTTATCTCT-CTAAAGTTGCAGTGGAGCAGATTAAAGCTACAAATCTTATCTTCCTG
*
98999394 AATTTACAGTGGAGTAGATCGAAGA
65 AAGTTACAGTGGAGTAGATCGAAGA
* * * *
98999419 TAGCAAATCTTATCTCTCTAAAGTCGCAGTAGAGCAGATTAAAGCTATAAACCTTATC-TCTCTG
1 TAGCAAATCTTATCTCTCTAAAGTTGCAGTGGAGCAGATTAAAGCTACAAATCTTATCTTC-CTG
* * *
98999483 AAGTTACAGTGGAGCATG-TTGAAGT
65 AAGTTACAGTGGAGTA-GATCGAAGA
* * * * **
98999508 TA-CAAATCTTATCTTTCTGAAGTTGCAGTGGAGCAGACTGAATATAGCAAATCTTAT-TTCCCT
1 TAGCAAATCTTATCTCTCTAAAGTTGCAGTGGAGCAGATTAAAGCTA-CAAATCTTATCTT-CCT
* * * * *
98999571 -AAGGTTGCAGTGGAACAGATTAAAGCTACAAA
64 GAA-GTTACAGTGG---AG--TAGATCGA-AGA
* * * * ** *
98999603 TTA-CAAATCTTATCTC-CTTGAAGTTACAGTGGAGCAGATTGAAGTTACAGGTCTTAT-TGCCC
1 -TAGCAAATCTTATCTCTC-TAAAGTTGCAGTGGAGCAGATTAAAGCTACAAATCTTATCT-TCC
** *
98999665 TGAAGTTGTAGTAGAGTAGATCGAAGA
63 TGAAGTTACAGTGGAGTAGATCGAAGA
* * * * *
98999692 TAGCAAATCTTATCTCTCTAAAGTTGTAGTAGAGCAGATTAAAGCTAAAAACCTTATCTCCCTGA
1 TAGCAAATCTTATCTCTCTAAAGTTGCAGTGGAGCAGATTAAAGCTACAAATCTTATCTTCCTGA
* *
98999757 AGTTACAGTAGAGCAGA-CTGAAGA
66 AGTTACAGTGGAGTAGATC-GAAGA
* * * * * *
98999781 TAGCGAATCCTATTTCCCTAAAGTTGCAGTGGAACAAATTAAAGCTACAA
1 TAGCAAATCTTATCTCTCTAAAGTTGCAGTGGAGCAGATTAAAGCTACAA
98999831 GTTACAGATC
Statistics
Matches: 321, Mismatches: 68, Indels: 45
0.74 0.16 0.10
Matches are distributed among these distances:
88 64 0.20
89 179 0.56
90 9 0.03
92 4 0.01
94 2 0.01
95 22 0.07
96 41 0.13
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.30
Consensus pattern (89 bp):
TAGCAAATCTTATCTCTCTAAAGTTGCAGTGGAGCAGATTAAAGCTACAAATCTTATCTTCCTGA
AGTTACAGTGGAGTAGATCGAAGA
Found at i:98999578 original size:45 final size:44
Alignment explanation
Indices: 98999336--98999994 Score: 387
Period size: 44 Copynumber: 14.6 Consensus size: 44
98999326 AGTCGTAGCG
* * * * **
98999336 AATCTTATCTTCCTGAAGTTG-TGTGGAGTAGATTAAAGCCACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * * * *
98999379 AATCTTATCTTCTTGAATTTACAGTGGAGTAGATCGAAGATAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* * * * * * *
98999424 AATCTTATCTCTCTAAAGTCGCAGTAGAGCAGATTAAAGCTATA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * *
98999468 AACCTTATCTCTCTGAAGTTACAGTGGAGCATG-TTGAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCA-GATTGAAGATACA
** * *
98999512 AATCTTATCTTTCTGAAGTTGCAGTGGAGCAGACTGAATATAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* * *
98999557 AATCTTATTTCCCT-AAGGTTGCAGTGGAACAGATTAAAGCTACAAATTACA
1 AATCTTATCTCCCTGAA-GTTGCAGTGGAGCAGATT---G--A-AGA-TACA
* * *
98999608 AATCTTATCTCCTTGAAGTTACAGTGGAGCAGATTGAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
** * * * *
98999652 GGTCTTAT-TGCCCTGAAGTTGTAGTAGAGTAGATCGAAGATAGCA
1 AATCTTATCT-CCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* * * * * * *
98999697 AATCTTATCTCTCTAAAGTTGTAGTAGAGCAGATTAAAGCTAAA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * * *
98999741 AACCTTATCTCCCTGAAGTTACAGTAGAGCAGACTGAAGATAGCG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* * * * * * *
98999786 AATCCTATTTCCCTAAAGTTGCAGTGGAACAAATTAAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* ** * * *
98999830 AGTTACAGATCCCATCTCTTGAAGTTGTAGTGGAGCAGATTGAAGTTACA
1 A-AT-CTTAT--C-TC-CCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * * *
98999880 AATCTTATCTCTCTGAAGTTGCAATGGAGTAGATCGAA-ATTAAA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA-TACA
* * *
98999924 AATCTTGTCTCCCTAAAGTTGTAGTGGAGCAGATTGAA-ATTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA-TACA
* * *
98999968 ATTCCTATAC-CCCTAAAGTTGCAGTGG
1 AATCTTAT-CTCCCTGAAGTTGCAGTGG
98999995 GTTGGAATGA
Statistics
Matches: 469, Mismatches: 121, Indels: 51
0.73 0.19 0.08
Matches are distributed among these distances:
43 20 0.04
44 239 0.51
45 132 0.28
46 6 0.01
48 5 0.01
49 3 0.01
50 28 0.06
51 32 0.07
52 4 0.01
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
Found at i:98999633 original size:51 final size:51
Alignment explanation
Indices: 98999555--98999651 Score: 124
Period size: 51 Copynumber: 1.9 Consensus size: 51
98999545 CTGAATATAG
* *
98999555 CAAATCTTATTTCCCTAAGGTTGCAGTGGAACAGATTAAAGCTACAAATTA
1 CAAATCTTATCTCCCTAAGGTTACAGTGGAACAGATTAAAGCTACAAATTA
* * * *
98999606 CAAATCTTATCTCCTTGAA-GTTACAGTGGAGCAGATTGAAGTTACA
1 CAAATCTTATCTCCCT-AAGGTTACAGTGGAACAGATTAAAGCTACA
98999652 GGTCTTATTG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
51 37 0.95
52 2 0.05
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.30
Consensus pattern (51 bp):
CAAATCTTATCTCCCTAAGGTTACAGTGGAACAGATTAAAGCTACAAATTA
Found at i:98999699 original size:96 final size:96
Alignment explanation
Indices: 98999507--98999699 Score: 205
Period size: 96 Copynumber: 2.0 Consensus size: 96
98999497 CATGTTGAAG
* * *
98999507 TTACAAATCTTATCTTTCTGAAGTTGCAGTGGAGCAGACTGAATATAGCAAATCTTATTTCCCTA
1 TTACAAATCTTATCTCTCTGAAGTTACAGTGGAGCAGACTGAATATAGCAAATCTTATTGCCCTA
* * *
98999572 AGGTTGCAGTGGAACAGATTAAAGCTACAAA
66 AGGTTGCAGTAGAACAGATCAAAGATACAAA
* **
98999603 TTACAAATCTTATCTC-CTTGAAGTTACAGTGGAGCAGATTGAAGT-TA-CAGGTCTTATTGCCC
1 TTACAAATCTTATCTCTC-TGAAGTTACAGTGGAGCAGACTGAA-TATAGCAAATCTTATTGCCC
* ** *
98999665 TGAA-GTTGTAGTAGAGTAGATCGAAGATAGCAAA
64 T-AAGGTTGCAGTAGAACAGATCAAAGATA-CAAA
98999699 T
1 T
98999700 CTTATCTCTC
Statistics
Matches: 80, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
95 32 0.40
96 47 0.59
97 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.31
Consensus pattern (96 bp):
TTACAAATCTTATCTCTCTGAAGTTACAGTGGAGCAGACTGAATATAGCAAATCTTATTGCCCTA
AGGTTGCAGTAGAACAGATCAAAGATACAAA
Found at i:98999706 original size:229 final size:227
Alignment explanation
Indices: 98999376--98999968 Score: 697
Period size: 229 Copynumber: 2.6 Consensus size: 227
98999366 GATTAAAGCC
* * * * *
98999376 ACAAATCTTATCTTCTTGAATTTACAGTGGAGTAGATCGAAGATAGCAAATCTTATCTCTCTAAA
1 ACAAATCTTATC-TCTTGAAGTTACAGTGGAGCAGATTGAAGTTA-CAAATCTTATCTCTCTGAA
* * ** * * * * **
98999441 GTCGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTCTCTGAAGTTACAGTGGAGCATG-TTGA
64 GTTGCAGTAGAGTAGATCGAAGATAAAAATCTTATCTCTCTAAAGTTGTAGTGGAGCA-GATTGA
* ** * * * *
98999505 AGTTACAAATCTTATCTTTCTGAAGTTGCAGTGGAGCAGACTGAATATAGCAAATCTTATTTCCC
128 AGTTACAAACCTTATCTCCCTGAAGTTACAGTAGAGCAGACTGAAGATAGCAAATCCTATTTCCC
* *
98999570 TAAGGTTGCAGTGGAACAGATTAAAGCTACAAATT
193 TAAAGTTGCAGTGGAACAAATTAAAGCTACAAATT
** *
98999605 ACAAATCTTATCTCCTTGAAGTTACAGTGGAGCAGATTGAAGTTACAGGTCTTAT-TGCCCTGAA
1 ACAAATCTTATCT-CTTGAAGTTACAGTGGAGCAGATTGAAGTTACAAATCTTATCT-CTCTGAA
* * * *
98999669 GTTGTAGTAGAGTAGATCGAAGATAGCAAATCTTATCTCTCTAAAGTTGTAGTAGAGCAGATTAA
64 GTTGCAGTAGAGTAGATCGAAGATA-AAAATCTTATCTCTCTAAAGTTGTAGTGGAGCAGATTGA
* * *
98999734 AGCTAAAAACCTTATCTCCCTGAAGTTACAGTAGAGCAGACTGAAGATAGCGAATCCTATTTCCC
128 AGTTACAAACCTTATCTCCCTGAAGTTACAGTAGAGCAGACTGAAGATAGCAAATCCTATTTCCC
*
98999799 TAAAGTTGCAGTGGAACAAATTAAAGCTACAAGTT
193 TAAAGTTGCAGTGGAACAAATTAAAGCTACAAATT
* ** **
98999834 ACAGATCCCATCTCTTGAAGTTGTAGTGGAGCAGATTGAAGTTACAAATCTTATCTCTCTGAAGT
1 ACAAATCTTATCTCTTGAAGTTACAGTGGAGCAGATTGAAGTTACAAATCTTATCTCTCTGAAGT
* * * * *
98999899 TGCAATGGAGTAGATCGAA-ATTAAAAATCTTGTCTCCCTAAAGTTGTAGTGGAGCAGATTGAAA
66 TGCAGTAGAGTAGATCGAAGA-TAAAAATCTTATCTCTCTAAAGTTGTAGTGGAGCAGATTGAAG
98999963 TTACAA
130 TTACAA
98999969 TTCCTATACC
Statistics
Matches: 305, Mismatches: 53, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
227 41 0.13
228 97 0.32
229 167 0.55
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.30
Consensus pattern (227 bp):
ACAAATCTTATCTCTTGAAGTTACAGTGGAGCAGATTGAAGTTACAAATCTTATCTCTCTGAAGT
TGCAGTAGAGTAGATCGAAGATAAAAATCTTATCTCTCTAAAGTTGTAGTGGAGCAGATTGAAGT
TACAAACCTTATCTCCCTGAAGTTACAGTAGAGCAGACTGAAGATAGCAAATCCTATTTCCCTAA
AGTTGCAGTGGAACAAATTAAAGCTACAAATT
Done.