Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 301 of 322
Found at i:99958267 original size:39 final size:39
Alignment explanation
Indices: 99958213--99958291 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
99958203 TTTATGACAA
99958213 CTTAAAGATAATTAAGAGAAAAGTGATGGCTAAAAATTG
1 CTTAAAGATAATTAAGAGAAAAGTGATGGCTAAAAATTG
99958252 CTTAAAGATAATTAAGAGAAAAGTGATGGCTAAAAATTG
1 CTTAAAGATAATTAAGAGAAAAGTGATGGCTAAAAATTG
99958291 C
1 C
99958292 AAAGGTTCAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.48, C:0.06, G:0.20, T:0.25
Consensus pattern (39 bp):
CTTAAAGATAATTAAGAGAAAAGTGATGGCTAAAAATTG
Found at i:99962133 original size:40 final size:40
Alignment explanation
Indices: 99962056--99962187 Score: 117
Period size: 40 Copynumber: 3.3 Consensus size: 40
99962046 ACCCAAGTAT
*
99962056 CTTCGGGAT-TTAG-CCGAATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGAATATAACAACTAGCACAAATGC
* *
99962095 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGAATATAA-CAACTAGCACAAATGC
* * * * * * *
99962135 CTTTGGGACATAGCCCGTATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGAATATAACAACTAGCACAAATGC
* *
99962175 CTTTGGATCTTAG
1 CTTCGGGTCTTAG
99962188 TCCGGTTATC
Statistics
Matches: 75, Mismatches: 14, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
38 1 0.01
39 12 0.16
40 61 0.81
41 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGAATATAACAACTAGCACAAATGC
Found at i:99964696 original size:68 final size:65
Alignment explanation
Indices: 99964482--99964703 Score: 211
Period size: 67 Copynumber: 3.4 Consensus size: 65
99964472 CATAATTTTG
* *
99964482 GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGTGACCTAGCCACT--TTATCTCGTA
1 GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACTCATTATCTCGTA
** * * * * * * *
99964545 GCTCTCTTGTTTACATGGTGTTCTTCACCTGGAACCACACATGCAACCTAGCTA--CATCTATCT
1 GCTCTCTTGTACACATGGTG---TACACATAGTATCACCCATGCGACCTAGCTACTCAT-TATCT
*
99964608 CTTA
62 CGTA
99964612 GCTCTCTTGT-CTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCTCATAATATCT
1 GCTCTCTTGTAC-ACATGGTGTACACATAGTATCACCCATGCGACCTAGCTA-CTCAT--TATCT
99964676 CGTA
62 CGTA
* *
99964680 GCTCTCTTATACACATGGTATACA
1 GCTCTCTTGTACACATGGTGTACA
99964704 TCCCGTATTA
Statistics
Matches: 123, Mismatches: 24, Indels: 19
0.74 0.14 0.11
Matches are distributed among these distances:
63 18 0.15
64 24 0.20
66 23 0.19
67 29 0.24
68 28 0.23
69 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.32
Consensus pattern (65 bp):
GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACTCATTATCTCGTA
Found at i:99970638 original size:108 final size:109
Alignment explanation
Indices: 99970486--99970685 Score: 287
Period size: 108 Copynumber: 1.8 Consensus size: 109
99970476 ATTCTTTTGA
* *
99970486 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AACC-AACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTAACCAA
99970549 TGCCATGCCTTGGCATGGCCTTACATGGGACCTTTGCCTTATGGT
65 TGCCATGCCTTGGCATGGCCTTACATGGGACCTTTGCCTTATGGT
* * * * * *
99970594 AACTTATCAATGCCATGTCTTGACATGGTCTTACGTGATTTCCTTTCCTTAGAAACCTTACCATT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTAACCAAT
* *
99970659 GTCATGCCTTGGCATGGTCTTACATGG
66 GCCATGCCTTGGCATGGCCTTACATGG
99970686 TATCCTTAAA
Statistics
Matches: 80, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
107 1 0.01
108 49 0.61
109 30 0.38
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (109 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTAACCAAT
GCCATGCCTTGGCATGGCCTTACATGGGACCTTTGCCTTATGGT
Found at i:99977967 original size:40 final size:40
Alignment explanation
Indices: 99977922--99978096 Score: 287
Period size: 40 Copynumber: 4.4 Consensus size: 40
99977912 TATGTGCATA
* *
99977922 GCATTCGTGCAGGTTATTATAACCGGGTTAAGTTCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
99977962 GCATTCGTGCGGGTTATTATAACTGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
* *
99978002 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTTCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
99978042 GCATTCGTGCGGGTTATTATAATCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
99978082 GCATTCGTGCTGGTT
1 GCATTCGTGCGGGTT
99978097 GTTACATCCG
Statistics
Matches: 125, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 125 1.00
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.31
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:99993166 original size:27 final size:26
Alignment explanation
Indices: 99993135--99993312 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
99993125 TAAATTGTAC
99993135 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
99993162 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* * *
99993188 ATGCACTAAGTGTGCAAATTGACCATGC
1 A-GCACTAAGTGTGC-GATTGACTATGT
*
99993216 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
99993244 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
99993271 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
99993298 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
99993313 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 19, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 25 0.20
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:99993303 original size:82 final size:81
Alignment explanation
Indices: 99993132--99993312 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
99993122 GATTAAATTG
* *
99993132 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
99993197 GTGTGCAAATTGACCA
66 GTGTGCAAATTGACCA
* * * ** *
99993213 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* * **
99993277 AAGTGTGCGAGTTGATTA
64 AAGTGTGCAAATTGACCA
* *
99993295 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
99993313 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 18 0.22
82 64 0.78
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCAAATTGACCA
Found at i:99993323 original size:27 final size:27
Alignment explanation
Indices: 99993217--99993323 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
99993207 TGACCATGCG
* * * *
99993217 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
99993245 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
99993272 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
99993299 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
99993324 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:100001201 original size:27 final size:26
Alignment explanation
Indices: 100001170--100001347 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
100001160 TAAATTGTAC
*
100001170 AGCACTAAGTGTTCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
100001197 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
100001223 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
100001251 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
100001279 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
100001306 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
100001333 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
100001348 GGCTCAATAT
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 102 0.80
28 25 0.20
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:100001284 original size:82 final size:81
Alignment explanation
Indices: 100001171--100001326 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
100001161 AAATTGTACA
* * *
100001171 GCACTAAGTGTTCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
100001235 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
100001252 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
100001317 TGCGAGTTGA
65 TGCGAATTGA
100001327 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 14 0.22
82 50 0.77
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:100001338 original size:82 final size:81
Alignment explanation
Indices: 100001167--100001347 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
100001157 GATTAAATTG
* * *
100001167 TACAGCACTAAGTGTTCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
100001232 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
100001248 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
100001312 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
100001330 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
100001348 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 17 0.21
82 65 0.79
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:100001358 original size:27 final size:27
Alignment explanation
Indices: 100001252--100001358 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
100001242 TGACCATGCG
* * * *
100001252 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
100001280 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
100001307 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
100001334 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
100001359 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:100003304 original size:79 final size:80
Alignment explanation
Indices: 100003169--100003345 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
100003159 AATGATGTCC
* *
100003169 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGTG
100003234 CGAGTTAGTAATTCT
66 CGAGTTAGTAATTCT
* * * **
100003249 GGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCTGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACCAAATCCGGACTAAGATCC-GAAGGCATTTG
* * *
100003311 TGCGAGTTACT-ATAACC
64 TGCGAGTTAGTAAT-TCT
*
100003328 GGGCTATGTCCCGAAGGC
1 GGGCTAAGTCCCGAAGGC
100003346 ATTTGAACGA
Statistics
Matches: 82, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
78 5 0.06
79 54 0.66
80 23 0.28
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGTG
CGAGTTAGTAATTCT
Found at i:100003357 original size:40 final size:40
Alignment explanation
Indices: 100003166--100003350 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
100003156 TCGAATGATG
* * * *
100003166 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
100003206 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTAGTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
100003246 TCTGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
100003285 TCCGGGTTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
100003326 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
100003351 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
39 33 0.27
40 78 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:100003372 original size:79 final size:78
Alignment explanation
Indices: 100003203--100003383 Score: 190
Period size: 79 Copynumber: 2.3 Consensus size: 78
100003193 CTAAGTGACC
* * * *
100003203 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTAGTAATTCTGGGCTAAGCCCGAAGGCAT
1 ATATCCGG-TTAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCAT
**
100003268 TGGTGCGAGTTACT
65 TGGAACGAGTTACT
* *
100003282 AAATCCGGGTTAAG-TCCTGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGG
1 ATATCC-GGTTAAGATCC-GAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGG
*
100003345 CATTTGAACGAG-TAGCT
62 CATTGGAACGAGTTA-CT
100003362 ATATCCGGTTAA-ATTCCGAAGG
1 ATATCCGGTTAAGA-TCCGAAGG
100003384 TACGTGATAC
Statistics
Matches: 85, Mismatches: 10, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
78 5 0.06
79 51 0.60
80 29 0.34
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.27
Consensus pattern (78 bp):
ATATCCGGTTAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATT
GGAACGAGTTACT
Found at i:100028119 original size:40 final size:41
Alignment explanation
Indices: 100028063--100028141 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 41
100028053 CATGAGCATT
* * *
100028063 TGAATTAGATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG
1 TGAATTAGATCCGGGCTAAGACCCAAAGGCAATTGTGCTAG
100028104 TGAATT-GATCCGGGCTAAGACCCAAAGGCAATTGTGCT
1 TGAATTAGATCCGGGCTAAGACCCAAAGGCAATTGTGCT
100028142 TGTGGTAATA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
40 29 0.83
41 6 0.17
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (41 bp):
TGAATTAGATCCGGGCTAAGACCCAAAGGCAATTGTGCTAG
Found at i:100036405 original size:11 final size:10
Alignment explanation
Indices: 100036371--100036421 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
100036361 ATCTTTTCGA
100036371 TTTGG-TCTGT
1 TTTGGCTCT-T
*
100036381 TTTGTCTCTT
1 TTTGGCTCTT
100036391 TTTGGCTCATT
1 TTTGGCTC-TT
*
100036402 TTTGGCTCCT
1 TTTGGCTCTT
*
100036412 TTTGACTCTT
1 TTTGGCTCTT
100036422 GATGCTCTCC
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
10 21 0.62
11 13 0.38
ACGTcount: A:0.04, C:0.20, G:0.18, T:0.59
Consensus pattern (10 bp):
TTTGGCTCTT
Found at i:100040605 original size:33 final size:34
Alignment explanation
Indices: 100040560--100040633 Score: 107
Period size: 33 Copynumber: 2.2 Consensus size: 34
100040550 GTCGTCAATT
*
100040560 TTAAAA-TAAGGTTTTAAACGGGTGTTGTTTACC
1 TTAAAAGTAAGGTTTTAAACGGATGTTGTTTACC
* *
100040593 TTAAAAGT-AGGTTTTAAATGTATGTTGTTTACC
1 TTAAAAGTAAGGTTTTAAACGGATGTTGTTTACC
100040626 TTAAAAGT
1 TTAAAAGT
100040634 GCCGAACTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
33 36 0.97
34 1 0.03
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (34 bp):
TTAAAAGTAAGGTTTTAAACGGATGTTGTTTACC
Found at i:100047915 original size:57 final size:55
Alignment explanation
Indices: 100047792--100047978 Score: 189
Period size: 57 Copynumber: 3.3 Consensus size: 55
100047782 CTTATTATAG
* * * * *
100047792 AAAGGATTTAGCCTGGACGGGTAATCCTGATATAA-TCCCTCTTGAGCATATGTTACA-
1 AAAGGATTTAACCT-GACTGGTAATCCTAAT-TAACT-CTTC-TGAGCATACGTTACAT
* *
100047849 ATTATGATTTAACCTAGACTGGTAATCCTAATTAAGCTCTTCTGAGCATACGTTACAT
1 A-AAGGATTTAACCT-GACTGGTAATCCTAATTAA-CTCTTCTGAGCATACGTTACAT
* * *
100047907 AAAGGATTTAGCCTGAACTGGTATTCCTAATTGAACTCTTCTGAGCATACATTACAT
1 AAAGGATTTAACCTG-ACTGGTAATCCTAATT-AACTCTTCTGAGCATACGTTACAT
100047964 AAAGGATTTAACCTG
1 AAAGGATTTAACCTG
100047979 GAATAGTAAT
Statistics
Matches: 110, Mismatches: 14, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
56 1 0.01
57 78 0.71
58 30 0.27
59 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.33
Consensus pattern (55 bp):
AAAGGATTTAACCTGACTGGTAATCCTAATTAACTCTTCTGAGCATACGTTACAT
Found at i:100053102 original size:30 final size:30
Alignment explanation
Indices: 100053068--100053125 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
100053058 TTTTTCATCA
* *
100053068 TAGGGATAAAATGGTCATTTTG-CCAAAGTT
1 TAGGGACAAAACGGTCA-TTTGACCAAAGTT
*
100053098 TAGGGGCAAAACGGTCATTTGACCAAAG
1 TAGGGACAAAACGGTCATTTGACCAAAG
100053126 ATGTGAATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 4 0.17
30 20 0.83
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.26
Consensus pattern (30 bp):
TAGGGACAAAACGGTCATTTGACCAAAGTT
Found at i:100056399 original size:46 final size:46
Alignment explanation
Indices: 100056247--100056467 Score: 142
Period size: 46 Copynumber: 4.7 Consensus size: 46
100056237 ATTTGTTTGT
* * ** * ** *
100056247 GAGCTAGTGTAAGACATGTCTGGGACATGTGTCGGC-TACATTATGA
1 GAGCCAGTGTAAGACATGTATGGGACATGCATCAGCAT-CAAGACGA
* * * **
100056293 GAGGCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTATGGGACAT-GCATCAGCATCAAGACGA
* * *
100056341 GAGCTAGTGTAAGACATGTATGGGACATGCATCAGCCTCAAGGCGTA
1 GAGCCAGTGTAAGACATGTATGGGACATGCATCAGCATCAAGACG-A
* ** * *
100056388 -AGCCAGTGTAAGACATGTTTGGGACATGCATTGGC-TACGAGATGA
1 GAGCCAGTGTAAGACATGTATGGGACATGCATCAGCAT-CAAGACGA
* * *
100056433 TAGTCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GAGCCAGTGTAAGA-CATGTATGGGACAT-GCATC
100056468 GGCACCTTAC
Statistics
Matches: 140, Mismatches: 27, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
45 2 0.01
46 71 0.51
47 41 0.29
48 25 0.18
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.24
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTATGGGACATGCATCAGCATCAAGACGA
Found at i:100056458 original size:93 final size:95
Alignment explanation
Indices: 100056297--100056467 Score: 226
Period size: 93 Copynumber: 1.8 Consensus size: 95
100056287 TTATGAGAGG
*
100056297 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGACATGTAT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGACGAGAGCTAGTGTAAGACATGTAT
100056362 GGGACAT-GCATCAGCCTCAAGGCGTAAGC
66 GGGACATGGCATCAGCCTCAAGGCGTAAGC
* * * *
100056391 CAGTGTAAGA-CATGTTTGGGACAT-GCATTGGC-TACGAGATGATAG-TCAGTGTAAGACCATG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-CGAGACGAGAGCT-AGTGTAAGA-CATG
*
100056452 TCTGGGACATGGCATC
63 TATGGGACATGGCATC
100056468 GGCACCTTAC
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
91 2 0.03
92 24 0.36
93 26 0.39
94 15 0.22
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (95 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGACGAGAGCTAGTGTAAGACATGTAT
GGGACATGGCATCAGCCTCAAGGCGTAAGC
Found at i:100075429 original size:28 final size:29
Alignment explanation
Indices: 100075398--100075452 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
100075388 ACGAGTGACA
100075398 ACACGAGCGTG-TCTAAGCCATGTGAAGT
1 ACACGAGCGTGTTCTAAGCCATGTGAAGT
* * *
100075426 ACACGGGCGTGTTCTCAGCCGTGTGAA
1 ACACGAGCGTGTTCTAAGCCATGTGAA
100075453 AACCCTTGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 10 0.43
29 13 0.57
ACGTcount: A:0.24, C:0.24, G:0.31, T:0.22
Consensus pattern (29 bp):
ACACGAGCGTGTTCTAAGCCATGTGAAGT
Found at i:100076967 original size:29 final size:29
Alignment explanation
Indices: 100076925--100076982 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
100076915 GAGATGTAAA
100076925 AGTTGCAACAAGTTTCATTTCGGGGAATG
1 AGTTGCAACAAGTTTCATTTCGGGGAATG
*
100076954 AGTTGCAACAAGTTTCATTTCGGGTAATG
1 AGTTGCAACAAGTTTCATTTCGGGGAATG
100076983 CCGAATGAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.33
Consensus pattern (29 bp):
AGTTGCAACAAGTTTCATTTCGGGGAATG
Found at i:100091286 original size:49 final size:49
Alignment explanation
Indices: 100091000--100091310 Score: 175
Period size: 49 Copynumber: 6.6 Consensus size: 49
100090990 TATGTGAGCC
* * *
100091000 AGTGTAAGACATGTCTGGGACAT-GCATC-GACCAC-AT-TATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCAG-CCTCGATATATGAAAGCT
* * * * * *** *
100091046 AGTGTAAGACATTTTTGGGACAT-GCATCGGCATTG--AGCCGAAAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCAGCCTCGATATATGAAAGCT
* **
100091092 AGTGTAAGACATGTCTGGGACAT-GTATCAGCCTCGGGATAT-ACAAGCT
1 AGTGTAAGACATGTCTGGGACATGGCATCAGCCTCGATATATGA-AAGCT
* * * * * * * *
100091140 AGTGTAAGACCTATCTAGGACATGGCCTCAG-CTTG-T-TGTG--TGTT
1 AGTGTAAGACATGTCTGGGACATGGCATCAGCCTCGATATATGAAAGCT
* * * * * * *
100091184 AATGTAAGACTTGTCTGAGACATGGCATCAACACT-GATAGATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCAGC-CTCGATATATGAAAGCT
* * *
100091233 AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGAAAGTT
1 AGTGTAAGACATGTCTGGGACATGGCATCAGCCTCGATATATGAAAGCT
* *
100091282 AGTGTAAGACATGTTTGGGACACGGCATC
1 AGTGTAAGACATGTCTGGGACATGGCATC
100091311 GACTTTAAGA
Statistics
Matches: 197, Mismatches: 53, Indels: 27
0.71 0.19 0.10
Matches are distributed among these distances:
44 26 0.13
45 1 0.01
46 67 0.34
47 4 0.02
48 30 0.15
49 69 0.35
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACATGTCTGGGACATGGCATCAGCCTCGATATATGAAAGCT
Found at i:100095567 original size:39 final size:39
Alignment explanation
Indices: 100095509--100095585 Score: 127
Period size: 39 Copynumber: 2.0 Consensus size: 39
100095499 GTCAATTTTA
*
100095509 AAATAAGGTTTTAAACGGGTGTTGTTTACCTTAAAAGTG
1 AAATAAGGTTTTAAACGGGTATTGTTTACCTTAAAAGTG
**
100095548 AAATAAGGTTTTAGGCGGGTATTGTTTACCTTAAAAGT
1 AAATAAGGTTTTAAACGGGTATTGTTTACCTTAAAAGT
100095586 ACCGAAATTG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.32, C:0.08, G:0.23, T:0.36
Consensus pattern (39 bp):
AAATAAGGTTTTAAACGGGTATTGTTTACCTTAAAAGTG
Found at i:100109117 original size:40 final size:40
Alignment explanation
Indices: 100109017--100109188 Score: 213
Period size: 40 Copynumber: 4.3 Consensus size: 40
100109007 GCTCCTCGTT
* * *
100109017 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
100109057 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
100109096 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
100109136 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
100109176 CAAATGCCTTCGG
1 CAAATGCCTTCGG
100109189 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 34 0.29
40 79 0.68
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:100109201 original size:80 final size:79
Alignment explanation
Indices: 100109017--100109241 Score: 231
Period size: 80 Copynumber: 2.8 Consensus size: 79
100109007 GCTCCTCGTT
* * * * *
100109017 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
100109081 ATTTAACAACTCGCA
65 ATTTAACAACTCGCA
* * *
100109096 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
** *
100109161 AATTT-GTATCTCGCA
64 AATTTAACAACTCGCA
* * * * *
100109176 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
100109240 GA
63 GA
100109242 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 68 0.56
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAACAACTCGCA
Found at i:100109250 original size:41 final size:41
Alignment explanation
Indices: 100109173--100109250 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
100109163 TTTGTATCTC
* * *
100109173 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
100109214 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
100109251 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:100119033 original size:22 final size:23
Alignment explanation
Indices: 100119008--100119059 Score: 79
Period size: 24 Copynumber: 2.3 Consensus size: 23
100118998 AAACTTTGAT
100119008 GAGCT-GAACAGTAAGCTCATAC
1 GAGCTAGAACAGTAAGCTCATAC
*
100119030 GAGCTGAGAACAGTAAGCTCTTAC
1 GAGCT-AGAACAGTAAGCTCATAC
100119054 GAGCTA
1 GAGCTA
100119060 ATATATAGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 5 0.19
23 1 0.04
24 21 0.78
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (23 bp):
GAGCTAGAACAGTAAGCTCATAC
Found at i:100119043 original size:24 final size:24
Alignment explanation
Indices: 100119013--100119058 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
100119003 TTGATGAGCT
100119013 GAACAGTAAGCTCATACGAGCTGA
1 GAACAGTAAGCTCATACGAGCTGA
*
100119037 GAACAGTAAGCTCTTACGAGCT
1 GAACAGTAAGCTCATACGAGCT
100119059 AATATATAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.20
Consensus pattern (24 bp):
GAACAGTAAGCTCATACGAGCTGA
Found at i:100122655 original size:73 final size:73
Alignment explanation
Indices: 100122531--100122677 Score: 233
Period size: 73 Copynumber: 2.0 Consensus size: 73
100122521 CTCTTTTTCT
100122531 TTTTTATTCAATTTAAAAACAAAATTGGTAAAAGTCAACCAAAATTTGTGTGGTCAAGAATGCCC
1 TTTTTATTCAATTTAAAAACAAAATTGGTAAAAGTCAACCAAAATTTGTGTGGTCAAGAATGCCC
100122596 CTAATTTA
66 CTAATTTA
* ** *
100122604 TTTTTATTCAATTTAAAAATAAGGTTGGTAAAAGTCAACC-AAATTTCGTGTGGTCAAGAATGCT
1 TTTTTATTCAATTTAAAAACAAAATTGGTAAAAGTCAACCAAAATTT-GTGTGGTCAAGAATGCC
*
100122668 CTTAATTTA
65 CCTAATTTA
100122677 T
1 T
100122678 AAAATTAAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
72 6 0.09
73 62 0.91
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (73 bp):
TTTTTATTCAATTTAAAAACAAAATTGGTAAAAGTCAACCAAAATTTGTGTGGTCAAGAATGCCC
CTAATTTA
Found at i:100123618 original size:50 final size:50
Alignment explanation
Indices: 100123543--100123638 Score: 167
Period size: 50 Copynumber: 1.9 Consensus size: 50
100123533 ACTATTTTAC
*
100123543 TTAAATAACTTGAAAAAAGTAATTATTTATGAGGATGAACC-AAATTCAAA
1 TTAAATAACTTGAAAAAAGTAATTATTTATAAGGATG-ACCTAAATTCAAA
100123593 TTAAATAACTTGAAAAAAGTAATTATTTATAAGGATGACCTAAATT
1 TTAAATAACTTGAAAAAAGTAATTATTTATAAGGATGACCTAAATT
100123639 TAAAAACAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
49 3 0.07
50 41 0.93
ACGTcount: A:0.49, C:0.07, G:0.11, T:0.32
Consensus pattern (50 bp):
TTAAATAACTTGAAAAAAGTAATTATTTATAAGGATGACCTAAATTCAAA
Found at i:100125963 original size:16 final size:15
Alignment explanation
Indices: 100125937--100125970 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
100125927 CATTTTCAGG
*
100125937 TTTTTTATTTTGTTA
1 TTTTTTATTTTGATA
100125952 TTTTTTATTTTTGATA
1 TTTTTTA-TTTTGATA
100125968 TTT
1 TTT
100125971 GAAAAATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.15, C:0.00, G:0.06, T:0.79
Consensus pattern (15 bp):
TTTTTTATTTTGATA
Found at i:100126836 original size:19 final size:20
Alignment explanation
Indices: 100126798--100126836 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
100126788 CAATCTTCAA
* *
100126798 TTAATTATTTATAAAGATAT
1 TTAATAATTTATAAACATAT
100126818 TTAATAATTT-TAAACATAT
1 TTAATAATTTATAAACATAT
100126837 AGAAATTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (20 bp):
TTAATAATTTATAAACATAT
Found at i:100128516 original size:46 final size:46
Alignment explanation
Indices: 100128460--100129317 Score: 1637
Period size: 46 Copynumber: 18.6 Consensus size: 46
100128450 TCTAGTAGCT
100128460 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
1 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
100128506 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
1 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
100128552 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
1 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
100128598 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
1 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
100128644 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
1 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
100128690 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
1 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
100128736 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
1 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
100128782 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
1 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
100128828 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
1 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
100128874 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
1 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
100128920 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
1 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
100128966 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
1 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
100129012 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
1 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
100129058 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
1 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
100129104 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
1 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
100129150 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
1 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
100129196 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
1 GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
* * * *
100129242 GATGCATGTCCCAGACATGTCTTACATTAACACT-CGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAAC-TTACGTCTCAAGGTC
*
100129288 GATGCCATGCCCCAGACATGGTCTTACACT
1 GATG-CATGTCCCAGACAT-GTCTTACACT
100129318 GGCTCTCATA
Statistics
Matches: 803, Mismatches: 6, Indels: 4
0.99 0.01 0.00
Matches are distributed among these distances:
46 780 0.97
47 14 0.02
48 9 0.01
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCAAGGTC
Found at i:100136391 original size:38 final size:38
Alignment explanation
Indices: 100136340--100136495 Score: 249
Period size: 38 Copynumber: 4.1 Consensus size: 38
100136330 TCGAAATATG
* *
100136340 ATATCCGGGTTAAATCTCGCAGGCTTCGTGCTTGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
* *
100136378 ATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAAT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
*
100136416 ATATCCGGTTTAAATCCCGCAGGCTTCGTGCTGGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
* *
100136454 ATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
100136492 ATAT
1 ATAT
100136496 TAGGGCCTTT
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 108 1.00
ACGTcount: A:0.21, C:0.22, G:0.24, T:0.33
Consensus pattern (38 bp):
ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
Found at i:100137593 original size:50 final size:50
Alignment explanation
Indices: 100137535--100137634 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
100137525 AAGAAAGGAA
100137535 GGGGAAAAAGGCTTGAGAAAAATCGGCTATGGTGGTGGTTAGACTAAGGT
1 GGGGAAAAAGGCTTGAGAAAAATCGGCTATGGTGGTGGTTAGACTAAGGT
100137585 GGGGAAAAAGGCTTGAGAAAAATCGGCTATGGTGGTGGTTAGACTAAGGT
1 GGGGAAAAAGGCTTGAGAAAAATCGGCTATGGTGGTGGTTAGACTAAGGT
100137635 ATGTTTGATG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.32, C:0.08, G:0.38, T:0.22
Consensus pattern (50 bp):
GGGGAAAAAGGCTTGAGAAAAATCGGCTATGGTGGTGGTTAGACTAAGGT
Found at i:100138867 original size:55 final size:54
Alignment explanation
Indices: 100138772--100138921 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
100138762 CTACTTTGTT
* ** * *
100138772 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
100138826 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
100138881 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
100138922 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:100138884 original size:27 final size:27
Alignment explanation
Indices: 100138744--100138921 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
100138734 TAAATTGTAC
100138744 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
100138771 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
100138797 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
100138825 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
100138853 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
100138880 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
100138907 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
100138922 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:100138885 original size:82 final size:81
Alignment explanation
Indices: 100138745--100138900 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
100138735 AAATTGTACA
* * * *
100138745 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
100138810 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
100138826 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
100138889 TGTGCGAGTTGA
63 TGTGCGAATTGA
100138901 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:100139991 original size:65 final size:65
Alignment explanation
Indices: 100139882--100140010 Score: 231
Period size: 65 Copynumber: 2.0 Consensus size: 65
100139872 AATTAGGGGT
*
100139882 CGTACCATATATGTGCAGATTCCTCTCTGAGTCTAGTTTCCATAGAAACAAACGGCAACAGTATC
1 CGTACCATATATGTACAGATTCCTCTCTGAGTCTAGTTTCCATAGAAACAAACGGCAACAGTATC
* *
100139947 CGTACCATATATGTACAGATTCCTCTCTGAGTCTAGTTTTCATAGAAACAAACGGCATCAGTAT
1 CGTACCATATATGTACAGATTCCTCTCTGAGTCTAGTTTCCATAGAAACAAACGGCAACAGTAT
100140011 TGAAGCCCCG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 61 1.00
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.29
Consensus pattern (65 bp):
CGTACCATATATGTACAGATTCCTCTCTGAGTCTAGTTTCCATAGAAACAAACGGCAACAGTATC
Found at i:100141394 original size:151 final size:151
Alignment explanation
Indices: 100141120--100141420 Score: 548
Period size: 151 Copynumber: 2.0 Consensus size: 151
100141110 CCGGGAGTGC
*
100141120 GTAGCTGATGAGGTTGCTATGTGCAAAAGATTTGAGGAAGGATTGAACGAAGATTTAAAGCTACT
1 GTAGCTGATGAGGTTGCTATGTGCAAAAGATTCGAGGAAGGATTGAACGAAGATTTAAAGCTACT
* *
100141185 AATGGGTATTCTGGAAATAAAGGAATTCGTAACACTAGTCGAACGAGCCTGCAAGGCGGAGGAAC
66 AATGGGTATTCTGGAAATAAAAGAATTCGTAACACTAGTCGAACGAGCCTGCAAGGCGGAAGAAC
100141250 TTGGAAAGGAGAAGAGGAAGT
131 TTGGAAAGGAGAAGAGGAAGT
*
100141271 GTAGCTGATGAGGTTGCTATGTGCAAAAGATTCGAGGAAGGATTGAATGAAGATTTAAAGCTACT
1 GTAGCTGATGAGGTTGCTATGTGCAAAAGATTCGAGGAAGGATTGAACGAAGATTTAAAGCTACT
* *
100141336 AATGGGTATTTTGGAAATAAAAGAATTCGTAACACTATTCGAACGAGCCTGCAAGGCGGAAGAAC
66 AATGGGTATTCTGGAAATAAAAGAATTCGTAACACTAGTCGAACGAGCCTGCAAGGCGGAAGAAC
100141401 TTGGAAAGGAGAAGAGGAAG
131 TTGGAAAGGAGAAGAGGAAG
100141421 GCTGAATTTG
Statistics
Matches: 144, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
151 144 1.00
ACGTcount: A:0.37, C:0.11, G:0.30, T:0.22
Consensus pattern (151 bp):
GTAGCTGATGAGGTTGCTATGTGCAAAAGATTCGAGGAAGGATTGAACGAAGATTTAAAGCTACT
AATGGGTATTCTGGAAATAAAAGAATTCGTAACACTAGTCGAACGAGCCTGCAAGGCGGAAGAAC
TTGGAAAGGAGAAGAGGAAGT
Found at i:100147157 original size:27 final size:27
Alignment explanation
Indices: 100147126--100147303 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
100147116 TAAATTGTAC
100147126 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
100147153 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
100147179 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
100147207 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
100147235 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
100147262 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
100147289 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
100147304 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:100147187 original size:54 final size:55
Alignment explanation
Indices: 100147126--100147400 Score: 215
Period size: 54 Copynumber: 5.3 Consensus size: 55
100147116 TAAATTGTAC
* *
100147126 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAATTGAATATGAT
* * ** * *
100147181 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGA-ATTGAATATGAT
* * * *
100147235 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAATTGAATATGAT
* * * * *
100147289 AGCACTGAGTGTGCG----GAC----T--CAAT-A-TGTACGAGTTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGA-ATTGAATATGAT
* * * *
100147332 AGCACTAAGTGTGCGATTTGATTATGTAGCACTAGGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAATTGAATATGAT
*
100147386 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
100147401 GACTCGATAT
Statistics
Matches: 173, Mismatches: 29, Indels: 37
0.72 0.12 0.15
Matches are distributed among these distances:
42 6 0.03
43 23 0.13
44 3 0.02
46 1 0.01
47 2 0.01
50 2 0.01
51 1 0.01
53 3 0.02
54 83 0.48
55 49 0.28
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAATTGAATATGAT
Found at i:100147240 original size:82 final size:81
Alignment explanation
Indices: 100147127--100147282 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
100147117 AAATTGTACA
* *
100147127 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
100147191 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
100147208 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
100147273 TGCGAGTTGA
65 TGCGAATTGA
100147283 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:100147294 original size:82 final size:81
Alignment explanation
Indices: 100147123--100147303 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
100147113 GATTAAATTG
* *
100147123 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
100147188 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
100147204 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
100147268 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
100147286 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
100147304 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:100147359 original size:27 final size:27
Alignment explanation
Indices: 100147321--100147400 Score: 115
Period size: 27 Copynumber: 3.0 Consensus size: 27
100147311 TATGTACGAG
*
100147321 TTTGACTATGTAGCACTAAGTGTGCGA
1 TTTGATTATGTAGCACTAAGTGTGCGA
*
100147348 TTTGATTATGTAGCACTAGGTGTGCGA
1 TTTGATTATGTAGCACTAAGTGTGCGA
* * *
100147375 GTTGATTATATAGCACTGAGTGTGCG
1 TTTGATTATGTAGCACTAAGTGTGCG
100147401 GACTCGATAT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.24, C:0.12, G:0.29, T:0.35
Consensus pattern (27 bp):
TTTGATTATGTAGCACTAAGTGTGCGA
Found at i:100147386 original size:97 final size:97
Alignment explanation
Indices: 100147220--100147410 Score: 355
Period size: 97 Copynumber: 2.0 Consensus size: 97
100147210 ACTAAGTGTG
100147220 CGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATT
1 CGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATT
100147285 ATATAGCACTGAGTGTGCGGACTCAATATGTA
66 ATATAGCACTGAGTGTGCGGACTCAATATGTA
* *
100147317 CGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAGGTGTGCGAGTTGATT
1 CGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATT
*
100147382 ATATAGCACTGAGTGTGCGGACTCGATAT
66 ATATAGCACTGAGTGTGCGGACTCAATAT
100147411 ACATTCGTGA
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
97 91 1.00
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (97 bp):
CGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATT
ATATAGCACTGAGTGTGCGGACTCAATATGTA
Found at i:100155038 original size:28 final size:28
Alignment explanation
Indices: 100154975--100155072 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
100154965 ATATTAAGTC
*
100154975 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
100155002 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
100155030 CGCACACTTAGTGCTGA-ACAATTTAAACC
1 CGCACACTTAGTGCT-ATATAA-TCAAACT
100155059 CGCACACTTAGTGC
1 CGCACACTTAGTGC
100155073 CAATCTCATG
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 22 0.34
28 22 0.34
29 20 0.31
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:100159909 original size:20 final size:20
Alignment explanation
Indices: 100159843--100159909 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
100159833 ATTTTGATAA
*
100159843 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
100159863 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
100159883 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
100159903 ACGTGAT
1 ACATGAT
100159910 GTATTCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:100159984 original size:24 final size:24
Alignment explanation
Indices: 100159958--100160101 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
100159948 GAGGAAGTGC
*
100159958 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
* *
100159982 AAAAGGGCTTATGCCCCAATTATA
1 AAAAGGGCTTATGCCCCAGTTATT
* *
100160006 AAAAGAGCTTATGCCCCAGTTGTT
1 AAAAGGGCTTATGCCCCAGTTATT
100160030 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
100160054 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
100160078 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
100160102 ATGATAAAGC
Statistics
Matches: 107, Mismatches: 11, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
24 96 0.90
25 11 0.10
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:100162841 original size:39 final size:39
Alignment explanation
Indices: 100162793--100162872 Score: 133
Period size: 39 Copynumber: 2.1 Consensus size: 39
100162783 TGTGAATATA
*
100162793 TATACGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
1 TATACGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
* *
100162832 TATATGCGAGAATTATATCCGGACTTTAGGTCCGCAGGC
1 TATACGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
100162871 TA
1 TA
100162873 CGTGCTGGAC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.28
Consensus pattern (39 bp):
TATACGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:100168198 original size:54 final size:54
Alignment explanation
Indices: 100168113--100168375 Score: 269
Period size: 54 Copynumber: 4.9 Consensus size: 54
100168103 CTTGGTTTAC
* * * * *
100168113 AAAATTACCAAAATACCCTCAATTGGCAAAATTACCAAAATACCATTGGTTTGT
1 AAAATTATCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCTTGATTTGT
* * * *
100168167 AAAATTACCAAAATACCC-CTGATTTGTAAAATTACCAAAATACCCCTAATTTGT
1 AAAATTATCAAAATACCCTC-AATTTGTAAAATTACCAAAATACCCTTGATTTGT
* ** * ** * * * *
100168221 GAAATTATTGAAATACCCTCGACCTGTAAAATTATCGAAATACCCTCGACTTGT
1 AAAATTATCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCTTGATTTGT
*
100168275 AAAATTATCAAAATACCCTCAATTTGTAAAATTACCAAAATACTCC-TGATTTGA
1 AAAATTATCAAAATACCCTCAATTTGTAAAATTACCAAAATAC-CCTTGATTTGT
* * * *
100168329 AAAATTATCGAAATACCCTTAATTTGGAAAATTACAAAAATAGCCCT
1 AAAATTATCAAAATACCCTCAATTTGTAAAATTACCAAAATA-CCCT
100168376 AATTTACAGA
Statistics
Matches: 170, Mismatches: 34, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
53 1 0.01
54 165 0.97
55 4 0.02
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.29
Consensus pattern (54 bp):
AAAATTATCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCTTGATTTGT
Found at i:100168200 original size:81 final size:80
Alignment explanation
Indices: 100168113--100168380 Score: 281
Period size: 81 Copynumber: 3.3 Consensus size: 80
100168103 CTTGGTTTAC
* * * * *
100168113 AAAATTACCAAAATACCCTCAATTGGCAAAATTACCAAAATACCATTGGTTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACC-TTGATTTGTAAAATTATCGA
100168178 AATACCCCTGATTTGT
65 AATACCCCTGATTTGT
* *** * **
100168194 AAAATTACCAAAATACCC-CTAATTTGTGAAATTATTGAAATACCCTCGACCTGTAAAATTATCG
1 AAAATTACCAAAATACCCTC-AATTTGTAAAATTACCAAAATA-CCTTGATTTGTAAAATTATCG
*
100168258 AAATA-CCCTCGACTTGT
64 AAATACCCCT-GATTTGT
* * *
100168275 AAAATTATCAAAATACCCTCAATTTGTAAAATTACCAAAATACTCCTGATTTGAAAAATTATCGA
1 AAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATAC-CTTGATTTGTAAAATTATCGA
* * *
100168340 AATACCCTTAATTTGG
65 AATACCCCTGATTTGT
*
100168356 AAAATTACAAAAATAGCCCT-AATTT
1 AAAATTACCAAAATA-CCCTCAATTT
100168381 ACAGAAATAC
Statistics
Matches: 151, Mismatches: 29, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
80 6 0.04
81 135 0.89
82 10 0.07
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (80 bp):
AAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCTTGATTTGTAAAATTATCGAA
ATACCCCTGATTTGT
Found at i:100168378 original size:27 final size:26
Alignment explanation
Indices: 100168113--100168380 Score: 230
Period size: 27 Copynumber: 9.9 Consensus size: 26
100168103 CTTGGTTTAC
* *
100168113 AAAATTACCAAAATACCCTCAATTGGC
1 AAAATTACCAAAATACCCT-AATTTGT
* **
100168140 AAAATTACCAAAATACCATTGGTTTGT
1 AAAATTACCAAAATACC-CTAATTTGT
*
100168167 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATA-CCCTAATTTGT
100168194 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATA-CCCTAATTTGT
* *** * **
100168221 GAAATTATTGAAATACCCTCGACCTGT
1 AAAATTACCAAAATACCCT-AATTTGT
* * * *
100168248 AAAATTATCGAAATACCCTCGACTTGT
1 AAAATTACCAAAATACCCT-AATTTGT
*
100168275 AAAATTATCAAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCT-AATTTGT
* *
100168302 AAAATTACCAAAATACTCCTGATTTGA
1 AAAATTACCAAAATAC-CCTAATTTGT
* * *
100168329 AAAATTATCGAAATACCCTTAATTTGG
1 AAAATTACCAAAATACCC-TAATTTGT
*
100168356 AAAATTACAAAAATAGCCCTAATTT
1 AAAATTACCAAAATA-CCCTAATTT
100168381 ACAGAAATAC
Statistics
Matches: 204, Mismatches: 31, Indels: 12
0.83 0.13 0.05
Matches are distributed among these distances:
26 6 0.03
27 189 0.93
28 9 0.04
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (26 bp):
AAAATTACCAAAATACCCTAATTTGT
Found at i:100168416 original size:27 final size:27
Alignment explanation
Indices: 100168379--100168449 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
100168369 TAGCCCTAAT
100168379 TTACAGAAATACCCTTGACTTTCAAAAA
1 TTACA-AAATACCCTTGACTTTCAAAAA
* * **
100168407 TTACAAAATACCATT-AGTTTGTAAAA
1 TTACAAAATACCCTTGACTTTCAAAAA
*
100168433 TTACCGAAATACCCTTG
1 TTA-CAAAATACCCTTG
100168450 GTTTGTAGAT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
26 11 0.31
27 19 0.54
28 5 0.14
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
TTACAAAATACCCTTGACTTTCAAAAA
Found at i:100168443 original size:73 final size:72
Alignment explanation
Indices: 100168312--100168447 Score: 168
Period size: 73 Copynumber: 1.9 Consensus size: 72
100168302 AAAATTACCA
* * *
100168312 AAATACTCCTGATTTGAAAAATTATCGAAATACCCTTAATTTGGAAAATTACAAAAATAGCCCTA
1 AAATACTCCTGATTTCAAAAATTATCAAAATACCATTAATTTGGAAAATTACAAAAATA-CCCTA
100168377 ATTTACAG
65 ATTTACAG
* * **
100168385 AAATAC-CCTTGACTTTCAAAAATTA-CAAAATACCATTAGTTTGTAAAATTACCGAAATACCCT
1 AAATACTCC-TGA-TTTCAAAAATTATCAAAATACCATTAATTTGGAAAATTACAAAAATACCCT
100168448 TGGTTTGTAG
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
72 6 0.11
73 37 0.69
74 11 0.20
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.30
Consensus pattern (72 bp):
AAATACTCCTGATTTCAAAAATTATCAAAATACCATTAATTTGGAAAATTACAAAAATACCCTAA
TTTACAG
Found at i:100168453 original size:27 final size:27
Alignment explanation
Indices: 100168410--100168476 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 27
100168400 TCAAAAATTA
* *
100168410 CAAAATACCATTAGTTTGTAAAATTAC
1 CAAAATACCCTTGGTTTGTAAAATTAC
* * *
100168437 CGAAATACCCTTGGTTTGTAGATTTAC
1 CAAAATACCCTTGGTTTGTAAAATTAC
*
100168464 CAAAACACCCTTG
1 CAAAATACCCTTG
100168477 TAGGGTGAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.31
Consensus pattern (27 bp):
CAAAATACCCTTGGTTTGTAAAATTAC
Found at i:100168558 original size:14 final size:14
Alignment explanation
Indices: 100168539--100168569 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
100168529 TCTAAGGTGT
100168539 ATGACTCACTGATA
1 ATGACTCACTGATA
100168553 ATGACTCACTGATA
1 ATGACTCACTGATA
100168567 ATG
1 ATG
100168570 CAATTTGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.29
Consensus pattern (14 bp):
ATGACTCACTGATA
Found at i:100170511 original size:39 final size:39
Alignment explanation
Indices: 100170467--100170558 Score: 157
Period size: 39 Copynumber: 2.4 Consensus size: 39
100170457 ATTATATTAT
*
100170467 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAACCCGGATACATTTC
* *
100170506 CAGCACGAAGCCTGCGGGACTTTAGCCTGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAACCCGGATACATTTC
100170545 CAGCACGAAGCCTG
1 CAGCACGAAGCCTG
100170559 TAACACCCCG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 50 1.00
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.20
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAACCCGGATACATTTC
Found at i:100172014 original size:40 final size:40
Alignment explanation
Indices: 100171959--100172110 Score: 198
Period size: 40 Copynumber: 3.8 Consensus size: 40
100171949 ATAACCACAA
* * *
100171959 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
100171999 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
100172039 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * *
100172079 GCATAAATGCCTTCGGGACTTAGCCTGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
100172111 CATTCAAATG
Statistics
Matches: 101, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
39 1 0.01
40 96 0.95
41 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:100180202 original size:40 final size:40
Alignment explanation
Indices: 100180158--100180383 Score: 425
Period size: 40 Copynumber: 5.7 Consensus size: 40
100180148 AACTCGCACG
*
100180158 AATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCATA
1 AATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATA
100180198 AATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATA
1 AATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATA
100180238 AATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATA
1 AATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATA
100180278 AATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATA
1 AATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATA
100180318 AATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATA
1 AATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATA
* *
100180358 AATGCCCTCGGGACTCAGCCCGGATA
1 AATGCCTTCGGGACTTAGCCCGGATA
100180384 TCATTCAAAT
Statistics
Matches: 183, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 183 1.00
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.22
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATA
Found at i:100187499 original size:28 final size:28
Alignment explanation
Indices: 100187459--100187523 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
100187449 ATGTACTAGA
*
100187459 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
100187487 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
100187515 ATACCCCTA
1 ATACCCCTA
100187524 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:100187687 original size:27 final size:27
Alignment explanation
Indices: 100187629--100187718 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
100187619 AGGAAGCGTC
100187629 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
100187657 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
*
100187684 CTGGTGGCACTGCTACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
100187713 CTGGTG
1 CTGGTG
100187719 ACTCTATCAC
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
27 22 0.41
28 25 0.46
29 7 0.13
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.33
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:100189228 original size:39 final size:40
Alignment explanation
Indices: 100189111--100189291 Score: 189
Period size: 40 Copynumber: 4.6 Consensus size: 40
100189101 GCTCCTCGTT
* *
100189111 CAAATGCCTTTGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGT-ATCTCGCA
* *
100189151 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
*
100189191 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
* *
100189230 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGT-ATC-TCGCA
100189271 C-AA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
100189292 AGACATCATT
Statistics
Matches: 122, Mismatches: 11, Indels: 17
0.81 0.07 0.11
Matches are distributed among these distances:
38 2 0.02
39 47 0.39
40 63 0.52
41 10 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
Found at i:100189255 original size:79 final size:81
Alignment explanation
Indices: 100189111--100189291 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 81
100189101 GCTCCTCGTT
* * *
100189111 CAAATGCCTTTGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
*
100189176 AT-TTAGTAAC-TCGCA
66 ATATT-GTAACTTAGCA
**
100189191 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
*
100189252 CGGATATTGTCACTTAGCA
63 CGGATATTGTAACTTAGCA
100189271 C-AA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
100189292 AGACATCATT
Statistics
Matches: 88, Mismatches: 7, Indels: 13
0.81 0.06 0.12
Matches are distributed among these distances:
78 15 0.17
79 53 0.60
80 20 0.23
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATTGTAACTTAGCA
Found at i:100191968 original size:11 final size:10
Alignment explanation
Indices: 100191940--100191973 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
100191930 AGCTTGTAAG
100191940 TATTCTGAAT
1 TATTCTGAAT
*
100191950 TTTTCTGAAT
1 TATTCTGAAT
100191960 ATATTCTGAAT
1 -TATTCTGAAT
100191971 TAT
1 TAT
100191974 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:100198118 original size:8 final size:8
Alignment explanation
Indices: 100198105--100198135 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
100198095 CTAGATCGGC
100198105 AAAAGCCG
1 AAAAGCCG
100198113 AAAAGCCG
1 AAAAGCCG
*
100198121 AAATGCCG
1 AAAAGCCG
100198129 AAAAGCC
1 AAAAGCC
100198136 CGTATTTTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.48, C:0.26, G:0.23, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:100198423 original size:28 final size:28
Alignment explanation
Indices: 100198383--100198447 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
100198373 ATGTACTAGA
*
100198383 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
100198411 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
100198439 ATACCCCTA
1 ATACCCCTA
100198448 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:100198611 original size:27 final size:27
Alignment explanation
Indices: 100198553--100198641 Score: 108
Period size: 28 Copynumber: 3.2 Consensus size: 27
100198543 AGGAAGCGTC
100198553 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
100198581 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
*
100198608 CTGGTGGCACTGCTACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
100198637 CTGGT
1 CTGGT
100198642 AACTCTGTCA
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
27 22 0.42
28 25 0.47
29 6 0.11
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:100198661 original size:55 final size:56
Alignment explanation
Indices: 100198553--100198667 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
100198543 AGGAAGCGTC
* **
100198553 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTAACCCTGCCACATATATCTGTAT
* * * *
100198608 CTGGTGGC-ACTGCTACAAAATATCTGTATCTGGTAACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTAACCCTGCCACATATATCTGTAT
100198664 CTGG
1 CTGG
100198668 CAGTCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.58
56 20 0.40
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTAACCCTGCCACATATATCTGTAT
Found at i:100201987 original size:39 final size:39
Alignment explanation
Indices: 100201924--100202803 Score: 1681
Period size: 39 Copynumber: 22.6 Consensus size: 39
100201914 GAAATTATAT
* * *
100201924 CTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGA
1 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
100201963 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
1 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
100202002 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
1 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
100202041 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
1 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
100202080 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
1 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
100202119 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
1 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
100202158 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
1 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
100202197 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
1 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
100202236 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
1 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
100202275 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
1 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
100202314 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
1 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
100202353 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
1 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
100202392 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
1 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
100202431 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
1 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
100202470 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
1 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
100202509 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
1 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
100202548 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
1 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
100202587 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
1 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
100202626 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
1 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
100202665 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
1 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
100202704 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
1 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
* * *
100202743 CTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGA
1 CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
* *
100202782 CTTT-GCCCGGATACATTTCCAG
1 CTTTGGCCTGGATATATTTCCAG
100202804 TGTCTTGCAT
Statistics
Matches: 835, Mismatches: 6, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
38 18 0.02
39 817 0.98
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (39 bp):
CTTTGGCCTGGATATATTTCCAGCACGAAGCCTGCGGGA
Found at i:100205784 original size:30 final size:30
Alignment explanation
Indices: 100205750--100205809 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
100205740 ATTTAATATG
100205750 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
100205780 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
100205810 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:100208879 original size:48 final size:48
Alignment explanation
Indices: 100208825--100209043 Score: 375
Period size: 48 Copynumber: 4.6 Consensus size: 48
100208815 TGTGTGGTGG
* *
100208825 AGCCGAATGGCTAGTGTGATATATGTATGAGATATATATATGTGGTAA
1 AGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
* *
100208873 AGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
1 AGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
100208921 AGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 AGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
*
100208969 AGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATTTGGTAA
1 AGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
* *
100209017 AGCTGAATGGCTAATGTGAAATATGTA
1 AGCCGAATGGCTAGTGTGAAATATGTA
100209044 GGCGATGTGC
Statistics
Matches: 162, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 162 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
AGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
Found at i:100209178 original size:88 final size:88
Alignment explanation
Indices: 100209085--100209261 Score: 354
Period size: 88 Copynumber: 2.0 Consensus size: 88
100209075 AAATGTGAAA
100209085 GGTGTGTATTATTAGATATTTGATGAGGCAAATGAATTACAAATATGACAGACGATGTGAATGTT
1 GGTGTGTATTATTAGATATTTGATGAGGCAAATGAATTACAAATATGACAGACGATGTGAATGTT
100209150 GTAACATGTGATTAAATGTACAT
66 GTAACATGTGATTAAATGTACAT
100209173 GGTGTGTATTATTAGATATTTGATGAGGCAAATGAATTACAAATATGACAGACGATGTGAATGTT
1 GGTGTGTATTATTAGATATTTGATGAGGCAAATGAATTACAAATATGACAGACGATGTGAATGTT
100209238 GTAACATGTGATTAAATGTACAT
66 GTAACATGTGATTAAATGTACAT
100209261 G
1 G
100209262 AAACTTGGAA
Statistics
Matches: 89, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 89 1.00
ACGTcount: A:0.36, C:0.07, G:0.23, T:0.34
Consensus pattern (88 bp):
GGTGTGTATTATTAGATATTTGATGAGGCAAATGAATTACAAATATGACAGACGATGTGAATGTT
GTAACATGTGATTAAATGTACAT
Found at i:100216371 original size:19 final size:20
Alignment explanation
Indices: 100216347--100216384 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
100216337 GGTACCACCA
100216347 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
100216366 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
100216385 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:100218810 original size:41 final size:41
Alignment explanation
Indices: 100218765--100218887 Score: 183
Period size: 41 Copynumber: 3.0 Consensus size: 41
100218755 AGGAAGAAAG
100218765 TGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGGT
1 TGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGGT
* * *
100218806 TGAGGATCGCATGGTTGTTTGACGACCGTGGGTCCACCGAT
1 TGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGGT
* * * *
100218847 TAAGGATCGCATGGTTCCTTGATGACTGTGGATCCACCGGT
1 TGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGGT
100218888 GGCTTTTAAG
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 72 1.00
ACGTcount: A:0.18, C:0.23, G:0.33, T:0.27
Consensus pattern (41 bp):
TGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGGT
Found at i:100219069 original size:22 final size:22
Alignment explanation
Indices: 100219027--100219091 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
100219017 GCCAATTATT
* **
100219027 CTGATTATGGCTTTGCACCAAC
1 CTGATTATGGCTCTGTGCCAAC
100219049 CT-ATATATGGCTCTGTGCCAAC
1 CTGAT-TATGGCTCTGTGCCAAC
* *
100219071 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
100219092 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:100222114 original size:51 final size:51
Alignment explanation
Indices: 100221861--100222105 Score: 321
Period size: 51 Copynumber: 4.8 Consensus size: 51
100221851 ATACACGGTT
* *
100221861 GCCTTCACATAGTACCACCCTTGTAG-CCAAAGCTATTTCATTCACAAAGTG
1 GCCTTCACATAGTACCACACTTGT-GTCCAAAGCTATTTTATTCACAAAGTG
* * * *
100221912 GCCTTCACATAGTACCACACTTGTATCTAGAGCCATTTTATTCACAAAGTG
1 GCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAGTG
* * *
100221963 GCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTTAAAAAGTG
1 GCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAGTG
* * * * *
100222014 GCCTTTACATAGTACCAAACTTGTGTCCAAACCAATTATATTCACAAAGTG
1 GCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAGTG
** *
100222065 GCCTTCACACGGTACCAAACTTGTGTCCAAAGCTATTTTAT
1 GCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTAT
100222106 CCCTAAAGTT
Statistics
Matches: 168, Mismatches: 25, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
51 168 1.00
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.30
Consensus pattern (51 bp):
GCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAGTG
Found at i:100222188 original size:52 final size:52
Alignment explanation
Indices: 100222131--100222249 Score: 211
Period size: 52 Copynumber: 2.3 Consensus size: 52
100222121 AGGAAATTTC
*
100222131 TCACTTAGCACAATGCCATGGACTTATTTCACTTAGATGCCGTGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATTTCACTTAGATGCCATGGACTTATT
* *
100222183 TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
1 TCACTTAGCACAATGCCATGGACTTATTTCACTTAGATGCCATGGACTTATT
100222235 TCACTTAGCACAATG
1 TCACTTAGCACAATG
100222250 TCATATCCTA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 63 1.00
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (52 bp):
TCACTTAGCACAATGCCATGGACTTATTTCACTTAGATGCCATGGACTTATT
Found at i:100222208 original size:28 final size:27
Alignment explanation
Indices: 100222131--100222246 Score: 154
Period size: 24 Copynumber: 4.4 Consensus size: 27
100222121 AGGAAATTTC
100222131 TCACTTAGCACAATGCCATGGACTTATT
1 TCACTTAGCAC-ATGCCATGGACTTATT
*
100222159 TCACTTAG---ATGCCGTGGACTTATT
1 TCACTTAGCACATGCCATGGACTTATT
100222183 TCACTTAGCACATTGCCATGGACTTATT
1 TCACTTAGCACA-TGCCATGGACTTATT
*
100222211 TCACTTAG---ATGCCATGGTCTTATT
1 TCACTTAGCACATGCCATGGACTTATT
100222235 TCACTTAGCACA
1 TCACTTAGCACA
100222247 ATGTCATATC
Statistics
Matches: 78, Mismatches: 3, Indels: 15
0.81 0.03 0.16
Matches are distributed among these distances:
24 45 0.58
25 1 0.01
27 2 0.03
28 30 0.38
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (27 bp):
TCACTTAGCACATGCCATGGACTTATT
Found at i:100225157 original size:40 final size:40
Alignment explanation
Indices: 100224925--100225150 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
100224915 TTGAATGATG
* * * *
100224925 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAA
* * *
100224965 TCCAGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
100225005 TCCGGACTAAGAT-CCGAAGGCATTTCTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
100225045 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
100225085 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
100225126 -CAGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
100225151 AACGAGTAGC
Statistics
Matches: 166, Mismatches: 16, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
39 1 0.01
40 155 0.93
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:100233265 original size:40 final size:40
Alignment explanation
Indices: 100233026--100233251 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
100233016 TTGAATGATG
* * * *
100233026 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAA
* * *
100233066 TCCAGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
100233106 TCCGGACTAAGAT-CCGAAGGCATTTCTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
100233146 TCCGGGTTAAGTCCCGAAGCCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
100233186 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
100233227 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
100233252 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
39 1 0.01
40 154 0.93
41 10 0.06
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:100236615 original size:28 final size:28
Alignment explanation
Indices: 100236553--100236624 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
100236543 ACTTTATGCC
* *
100236553 TCGCACATTAAGTGCCATACTCGATATA
1 TCGCACACTAAGTGCCACACTCGATATA
* *
100236581 TCACACACTAAGTGCCACACTCGATATC
1 TCGCACACTAAGTGCCACACTCGATATA
*
100236609 TTGCACACTAAGTGCC
1 TCGCACACTAAGTGCC
100236625 GTAAATAGTA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.31, C:0.31, G:0.14, T:0.25
Consensus pattern (28 bp):
TCGCACACTAAGTGCCACACTCGATATA
Found at i:100241345 original size:27 final size:27
Alignment explanation
Indices: 100241322--100241504 Score: 249
Period size: 27 Copynumber: 6.8 Consensus size: 27
100241312 ATGAAAATAA
100241322 TAATTTTGTAAATCGAGGGTAAAACAG
1 TAATTTTGTAAATCGAGGGTAAAACAG
* * *
100241349 TAATTCTATAAATCGAGGGTAAAATAG
1 TAATTTTGTAAATCGAGGGTAAAACAG
* * * **
100241376 TAATTCTGTCAATTGAGGGTAAAATGG
1 TAATTTTGTAAATCGAGGGTAAAACAG
*
100241403 TAGTTTTGTAAATCGAGGGTAAAACAG
1 TAATTTTGTAAATCGAGGGTAAAACAG
*
100241430 TAATTTTGTAAATCGAGGGTAAAACGG
1 TAATTTTGTAAATCGAGGGTAAAACAG
*
100241457 TAATTCTGTAAATCGAGGGTAAAACAG
1 TAATTTTGTAAATCGAGGGTAAAACAG
* *
100241484 TAATTTTATAAATCGACGGTA
1 TAATTTTGTAAATCGAGGGTA
100241505 TTTCGATAAT
Statistics
Matches: 136, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 136 1.00
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31
Consensus pattern (27 bp):
TAATTTTGTAAATCGAGGGTAAAACAG
Found at i:100244003 original size:27 final size:27
Alignment explanation
Indices: 100243973--100244213 Score: 286
Period size: 27 Copynumber: 8.9 Consensus size: 27
100243963 AACACCCTAG
* * *
100243973 GGGTAAAATGGTAATTTTATAAATTGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* *
100244000 GGGTAAAAATGGTAATTCTGTAAATCGA
1 GGGT-AAAATAGTAATTTTGTAAATCGA
*
100244028 GGGTAAAATATTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
*
100244055 GGGTAAAATAGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* * ** *
100244082 GTGT-AAATAGTAATTCTGCCAATTGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* * *
100244108 GGGTAAAACAGTAATTCTATAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
*
100244135 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* *
100244162 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* *
100244189 TGGTAAAACAGTAATTTTGTAAATC
1 GGGTAAAATAGTAATTTTGTAAATC
100244214 AACGGTATTT
Statistics
Matches: 185, Mismatches: 27, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 22 0.12
27 139 0.75
28 24 0.13
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.32
Consensus pattern (27 bp):
GGGTAAAATAGTAATTTTGTAAATCGA
Found at i:100244195 original size:107 final size:108
Alignment explanation
Indices: 100243994--100244204 Score: 311
Period size: 107 Copynumber: 2.0 Consensus size: 108
100243984 TAATTTTATA
* * *
100243994 AATTGAGGGTAAAAATGGTAATTCTGTAAATCGAGGGTAAAATATTAATTTTGTAAATCGAGGGT
1 AATTGAGGGTAAAAA-GGTAATTCTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGT
* *
100244059 AAAATAGTAATTCTGTAAATCGAGTGT-AAATAGTAATTCTGCC
65 AAAATAGTAATTCTATAAATCGAGTGTAAAACAGTAATTCTGCC
100244102 AATTGAGGGTAAAACA-GTAATTCTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGT
1 AATTGAGGGTAAAA-AGGTAATTCTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGT
* *
100244166 AAAATGGTAATTTTATAAATCGA-TGGTAAAACAGTAATT
65 AAAATAGTAATTCTATAAATCGAGT-GTAAAACAGTAATT
100244205 TTGTAAATCA
Statistics
Matches: 93, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
106 1 0.01
107 67 0.72
108 24 0.26
109 1 0.01
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.31
Consensus pattern (108 bp):
AATTGAGGGTAAAAAGGTAATTCTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTA
AAATAGTAATTCTATAAATCGAGTGTAAAACAGTAATTCTGCC
Found at i:100247252 original size:24 final size:25
Alignment explanation
Indices: 100247216--100247272 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 25
100247206 TACTGACGTG
* *
100247216 CAAAAGGAGATGGAGCTGAAAAAGA
1 CAAAGGGAGATGGAGCAGAAAAAGA
* *
100247241 CAAAGGGA-ATGGATCAGAAAAATA
1 CAAAGGGAGATGGAGCAGAAAAAGA
100247265 -AAAGGGAG
1 CAAAGGGAG
100247273 GATTCTTCTC
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 7 0.26
24 13 0.48
25 7 0.26
ACGTcount: A:0.53, C:0.07, G:0.32, T:0.09
Consensus pattern (25 bp):
CAAAGGGAGATGGAGCAGAAAAAGA
Found at i:100257331 original size:27 final size:27
Alignment explanation
Indices: 100257295--100257568 Score: 262
Period size: 27 Copynumber: 10.1 Consensus size: 27
100257285 AACTCCTCTT
* * * * *
100257295 TGTGGCAAAATGACTGTATTGCCCCTG
1 TGTGGTAAAATGACTATTTTGCCCTTA
100257322 TGTGGTAAAATGACTATTTTGCCCTTA
1 TGTGGTAAAATGACTATTTTGCCCTTA
100257349 TGTGGTAAAATGACTATTTTGCCCTTA
1 TGTGGTAAAATGACTATTTTGCCCTTA
**
100257376 TGCAGTAAAATGACTATTTTGCCCTTA
1 TGTGGTAAAATGACTATTTTGCCCTTA
* * *
100257403 TGTGGTAGAATGATTGTTTTGCCCTTA
1 TGTGGTAAAATGACTATTTTGCCCTTA
* *
100257430 TATGGTAGAAA-GACTATTTTGCCCCTA
1 TGTGGTA-AAATGACTATTTTGCCCTTA
** * * * *
100257457 TAAGGTAGAATAATTGTTTTGCCCTTA
1 TGTGGTAAAATGACTATTTTGCCCTTA
*** * * *
100257484 CAAGGTAAAGTGACTATTTTTCCTTTA
1 TGTGGTAAAATGACTATTTTGCCCTTA
100257511 TGTGGTAAAATGACTATTTTGCCCTTA
1 TGTGGTAAAATGACTATTTTGCCCTTA
* * * * * *
100257538 TATGCTCAGATGACTGTTTTGCCCCTA
1 TGTGGTAAAATGACTATTTTGCCCTTA
100257565 TGTG
1 TGTG
100257569 ATGTATGTTT
Statistics
Matches: 201, Mismatches: 44, Indels: 4
0.81 0.18 0.02
Matches are distributed among these distances:
26 2 0.01
27 197 0.98
28 2 0.01
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (27 bp):
TGTGGTAAAATGACTATTTTGCCCTTA
Found at i:100260638 original size:30 final size:30
Alignment explanation
Indices: 100260604--100260664 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
100260594 TCCTTAACTC
*
100260604 AAACTTTTGCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATATTGCCCCT
* * *
100260634 AAACTTTTGCATATTTACACTATTGCCCCT
1 AAACTTTTGCAAAATTACAATATTGCCCCT
100260664 A
1 A
100260665 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATATTGCCCCT
Found at i:100261818 original size:19 final size:20
Alignment explanation
Indices: 100261781--100261819 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
100261771 AAGGCCTCTC
*
100261781 GGGATTTTATTTTTATTTTG
1 GGGATTTTATATTTATTTTG
*
100261801 GGGA-TTTATATTTGTTTTG
1 GGGATTTTATATTTATTTTG
100261820 CTTAAATACT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.15, C:0.00, G:0.23, T:0.62
Consensus pattern (20 bp):
GGGATTTTATATTTATTTTG
Found at i:100266234 original size:47 final size:47
Alignment explanation
Indices: 100266171--100266474 Score: 437
Period size: 47 Copynumber: 6.4 Consensus size: 47
100266161 CCCTTCGGGA
* * *
100266171 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
100266218 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
100266265 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
100266312 CTTATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
100266359 CCTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
100266406 CCTATCACATATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
100266455 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
100266475 GTACATCAAT
Statistics
Matches: 238, Mismatches: 17, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
47 193 0.81
49 45 0.19
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
Found at i:100272517 original size:40 final size:40
Alignment explanation
Indices: 100272455--100272701 Score: 210
Period size: 40 Copynumber: 6.2 Consensus size: 40
100272445 CGGATGATAA
*
100272455 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAAT-T
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCTAGT-GCTAATAT
* * * *
100272495 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGCTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGCTAATAT
* *
100272535 CCGGGCTAAGTCCCGAAGGCGTTTGTGC--GAGCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGCTA--ATAT
*
100272575 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGT--TATTAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGCTAATAT
* * * *
100272613 ACCAGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGCTAATAT
* *
100272654 CCGGGCTAAGTCCTGAAGGCATTTGAGCTAGTGGCT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GCTAATAT
100272694 CC-GGCTAA
1 CCGGGCTAA
100272702 ACTCTGAAGG
Statistics
Matches: 169, Mismatches: 23, Indels: 31
0.76 0.10 0.14
Matches are distributed among these distances:
37 2 0.01
38 4 0.02
39 37 0.22
40 119 0.70
41 5 0.03
42 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGCTAATAT
Found at i:100272640 original size:79 final size:80
Alignment explanation
Indices: 100272494--100272678 Score: 255
Period size: 79 Copynumber: 2.3 Consensus size: 80
100272484 AGTGGCTAAT
* * * *
100272494 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCAGGCTAAGTCCCGAAGGCATTT
* *
100272559 GTGCGAGCTATTATA
66 GTGCAAGCTACTATA
* * *
100272574 TCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTATTATA-CCAGGCTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCAGGCTAAGTCCCGAAGGCATTT
*
100272638 GTGCAAGTTACTATA
66 GTGCAAGCTACTATA
* *
100272653 ACCGGGCTAAGTCCTGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
100272679 AGCTAGTGGC
Statistics
Matches: 93, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
79 58 0.62
80 35 0.38
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCAGGCTAAGTCCCGAAGGCATTT
GTGCAAGCTACTATA
Found at i:100272700 original size:79 final size:80
Alignment explanation
Indices: 100272495--100272701 Score: 233
Period size: 79 Copynumber: 2.6 Consensus size: 80
100272485 GTGGCTAATT
* * * * * *
100272495 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGCT-ACTATATCCGGGCTAAGTCCCGAAGGCGTTT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGTGAG-TGACTATATCCAGGCTAAGTCCCGAAGGCATTT
* * *
100272559 GTGCGAGCTATTATAT
65 GTGCAAGCTACTATAA
* * *
100272575 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTATTATA-CCAGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGTGAGTGACTATATCCAGGCTAAGTCCCGAAGGCATTTG
*
100272639 TGCAAGTTACTATAA
66 TGCAAGCTACTATAA
* *
100272654 CCGGGCTAAGTCCTGAAGGCATTTGAGCT-AGTGGCTATATCC-GGCTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGAG-TGAGTGACTATATCCAGGCTAA
100272702 ACTCTGAAGG
Statistics
Matches: 109, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
79 73 0.67
80 36 0.33
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGTGAGTGACTATATCCAGGCTAAGTCCCGAAGGCATTTG
TGCAAGCTACTATAA
Found at i:100290172 original size:27 final size:27
Alignment explanation
Indices: 100290142--100290319 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
100290132 ATATTGAGTC
* *
100290142 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
100290169 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
100290196 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
100290224 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
100290251 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
100290278 CGCGCACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
100290305 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
100290320 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:100290286 original size:82 final size:81
Alignment explanation
Indices: 100290163--100290318 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
100290153 TGCTATATAA
* *
100290163 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
100290228 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
100290245 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCGCACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
100290309 CACTTAGTGC
65 CACTTAGTGC
100290319 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:100290302 original size:54 final size:54
Alignment explanation
Indices: 100290142--100290318 Score: 196
Period size: 54 Copynumber: 3.3 Consensus size: 54
100290132 ATATTGAGTC
* * * *
100290142 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGC-ATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* ** * *
100290196 CGCACACTTAGTGC-TACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAT-CATAATC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* ** *
100290251 CGCACACTTAGTGCATCATATTCATTTCGCGCACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
100290305 CGCACACTTAGTGC
1 CGCACACTTAGTGC
100290319 TGTACAATTT
Statistics
Matches: 103, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
52 1 0.01
54 56 0.54
55 45 0.44
56 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:100292743 original size:22 final size:23
Alignment explanation
Indices: 100292696--100292740 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
100292686 GGGTCAGTCA
100292696 AAAAAAGGTATGCTAATTAATCC
1 AAAAAAGGTATGCTAATTAATCC
*
100292719 AAAAAAGGTATGTTAATTAATC
1 AAAAAAGGTATGCTAATTAATC
100292741 AAAGGTCCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.49, C:0.09, G:0.13, T:0.29
Consensus pattern (23 bp):
AAAAAAGGTATGCTAATTAATCC
Found at i:100300931 original size:47 final size:47
Alignment explanation
Indices: 100300873--100300967 Score: 181
Period size: 47 Copynumber: 2.0 Consensus size: 47
100300863 AAGAAAAAGG
*
100300873 TAGAGGTTGAGACTAGAAATTGGAAGAAAAGACCGATGAGCGGTTCA
1 TAGAGGCTGAGACTAGAAATTGGAAGAAAAGACCGATGAGCGGTTCA
100300920 TAGAGGCTGAGACTAGAAATTGGAAGAAAAGACCGATGAGCGGTTCA
1 TAGAGGCTGAGACTAGAAATTGGAAGAAAAGACCGATGAGCGGTTCA
100300967 T
1 T
100300968 TTTCACAGTA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.38, C:0.12, G:0.32, T:0.19
Consensus pattern (47 bp):
TAGAGGCTGAGACTAGAAATTGGAAGAAAAGACCGATGAGCGGTTCA
Found at i:100301129 original size:48 final size:48
Alignment explanation
Indices: 100301052--100301148 Score: 158
Period size: 48 Copynumber: 2.0 Consensus size: 48
100301042 TATAAGAAGC
* *
100301052 AAAATGTGGGTCCTAAATCCCAGACTACTTCGGCAGCCAGTGTAGGGA
1 AAAATGTGGGTCCTAAATCCCAGAATACTTCGGCAGCCAATGTAGGGA
* *
100301100 AAAATGTGGGTCCTAAATCTCAGAATACTTCTGCAGCCAATGTAGGGA
1 AAAATGTGGGTCCTAAATCCCAGAATACTTCGGCAGCCAATGTAGGGA
100301148 A
1 A
100301149 CTCGAGATTT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.23
Consensus pattern (48 bp):
AAAATGTGGGTCCTAAATCCCAGAATACTTCGGCAGCCAATGTAGGGA
Found at i:100306184 original size:46 final size:46
Alignment explanation
Indices: 100306134--100306309 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
100306124 TGGTTGAGCA
100306134 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
100306180 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
100306225 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
100306273 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
100306310 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:100306290 original size:93 final size:93
Alignment explanation
Indices: 100306131--100306302 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
100306121 GGATGGTTGA
* *
100306131 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
100306196 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
100306224 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
100306289 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
100306303 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:100308087 original size:39 final size:39
Alignment explanation
Indices: 100308028--100308260 Score: 358
Period size: 39 Copynumber: 6.0 Consensus size: 39
100308018 AAGACACTGA
*
100308028 AAATGTATCCGAGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
100308067 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * * *
100308106 AAATATATCTGGGCCAAAGTCCCGCAGGCTTCGTGCTAG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
**
100308145 AAATGTATCCGGATTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
100308184 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * *
100308223 AAATGTATCCGGGTTAAAGTCTCGCAGGCTTTGTGCTG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
100308261 ATAATATAAT
Statistics
Matches: 176, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 176 1.00
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.24
Consensus pattern (39 bp):
AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:100315771 original size:47 final size:47
Alignment explanation
Indices: 100315714--100316422 Score: 1013
Period size: 47 Copynumber: 15.0 Consensus size: 47
100315704 TAAATGTGAT
* * *
100315714 GCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATATATGTGATAAG
1 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
*
100315761 GCCGAATGGCCAATGTGCTGAATGTGAAAGTGTATATATATGTGATAAG
1 GCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAG
* *
100315810 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
* *
100315857 GCCGAATGGCCAATGTGCTGAATGTGAAAGTGTATATATATGTGATAAA
1 GCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAG
* * *
100315906 GCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
* *
100315953 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
* *
100316000 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
* * *
100316047 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
* ** * *
100316094 GCCTAATGGCTGATGTGATGAATCTGAAAGTGTATATATGTGATAGG
1 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
* * * *
100316141 GCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATATATGTGATAGG
1 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
* * *
100316188 GCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATATATGTGATAAG
1 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
* *
100316235 GCCGAATGGCCAATGTGATGAATCTGAAAGTGTATATATGTGATAGG
1 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
* * *
100316282 GCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATATATGTGATAAG
1 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
* *
100316329 GCCGAATGGCCAATGTGATGAATCTGAAAGTGTATATATGTGATAGG
1 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
* * * *
100316376 GCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
100316423 TCCCGAAGGG
Statistics
Matches: 607, Mismatches: 51, Indels: 8
0.91 0.08 0.01
Matches are distributed among these distances:
47 521 0.86
49 86 0.14
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (47 bp):
GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
Found at i:100322362 original size:36 final size:36
Alignment explanation
Indices: 100322315--100322386 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
100322305 CCCTACAGGT
*
100322315 TTGACACGACCTAGACACACGAGCGTGTCTACTGGC
1 TTGACACGACCTAGACACACGAGCATGTCTACTGGC
100322351 TTGACACGACCTAGACACACGAGCATGTCTACTGGC
1 TTGACACGACCTAGACACACGAGCATGTCTACTGGC
100322387 CATGTATGTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.26, C:0.31, G:0.24, T:0.19
Consensus pattern (36 bp):
TTGACACGACCTAGACACACGAGCATGTCTACTGGC
Found at i:100327544 original size:64 final size:63
Alignment explanation
Indices: 100327443--100327569 Score: 182
Period size: 64 Copynumber: 2.0 Consensus size: 63
100327433 TTGCTGAGTC
* * * * *
100327443 GTGTAGGTAGTTGAGAAGTAGTGGAAGTCTGAAGCTAGTGGGTGATTGGAGTGTTTGAAGGGG
1 GTGTAGGTAGCTAAGAAGCAGTGGAACTCTGAAGCTAGTGGGCGATTGGAGTGTTTGAAGGGG
* *
100327506 NGTGTAGGTAGCTAAGAAGCAGTGGAACTCTGAAGCTAGTTGGCGGTTGGAGTGTTTGAAGGGG
1 -GTGTAGGTAGCTAAGAAGCAGTGGAACTCTGAAGCTAGTGGGCGATTGGAGTGTTTGAAGGGG
100327570 AGTGGGTGTG
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
64 56 1.00
ACGTcount: A:0.24, C:0.06, G:0.43, T:0.27
Consensus pattern (63 bp):
GTGTAGGTAGCTAAGAAGCAGTGGAACTCTGAAGCTAGTGGGCGATTGGAGTGTTTGAAGGGG
Found at i:100331446 original size:47 final size:47
Alignment explanation
Indices: 100331377--100331530 Score: 245
Period size: 47 Copynumber: 3.3 Consensus size: 47
100331367 ATCCGAACTT
* *
100331377 CGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGC
* *
100331424 CGAATGGCCAATGTTATGAATGTGAACATGCATATATGAGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGC
* *
100331471 CGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGGTAAGGC
1 CGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGC
*
100331518 CGAATGGCTAATG
1 CGAATGGCCAATG
100331531 CGAAATGTGT
Statistics
Matches: 98, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 98 1.00
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
CGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGC
Found at i:100331640 original size:46 final size:46
Alignment explanation
Indices: 100331504--100331640 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
100331494 GAACATGTAT
* *
100331504 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
100331550 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
100331596 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
100331641 TGTATATATA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:100331892 original size:37 final size:37
Alignment explanation
Indices: 100331784--100331892 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
100331774 GGAAATATAT
*
100331784 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
100331821 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
100331858 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
100331893 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:100338172 original size:39 final size:39
Alignment explanation
Indices: 100338129--100338416 Score: 366
Period size: 39 Copynumber: 7.3 Consensus size: 39
100338119 GACTAAGATT
*
100338129 CGAAGGCATTTGTGCGAGATACAAATTCCGAGCTAAGCC
1 CGAAGGCATTTGTGCGAGATACAAATTCCGGGCTAAGCC
* *
100338168 CGAAGGCATTTGTGCGAGATACTAATTCTGGGCTAAGCC
1 CGAAGGCATTTGTGCGAGATACAAATTCCGGGCTAAGCC
* * * *
100338207 CGAAGGCATTTGTGCGAGTTATTAAA-TCCGGACTAAGATC
1 CGAAGGCATTTGTGCGAGATA-CAAATTCCGGGCTAAG-CC
100338247 CGAAGGCATTTGTGCGAGATACAAATTCCGGGCTAAGCC
1 CGAAGGCATTTGTGCGAGATACAAATTCCGGGCTAAGCC
*
100338286 CGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCC
1 CGAAGGCATTTGTGCGAGATACAAATTCCGGGCTAAGCC
* * *
100338325 CGAAGGCATTTGTGCGAGTTATTAAA-TCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCGAGATA-CAAATTCCGGGCTAAG-CC
* * * *
100338365 CGAAGGCATTTGTGCGAGTTA-ATATAACCGGGCTATGTCC
1 CGAAGGCATTTGTGCGAGATACAAAT-TCCGGGCTAAG-CC
100338405 CGAAGGCATTTG
1 CGAAGGCATTTG
100338417 AACGAGGAGC
Statistics
Matches: 220, Mismatches: 22, Indels: 13
0.86 0.09 0.05
Matches are distributed among these distances:
38 2 0.01
39 137 0.62
40 81 0.37
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (39 bp):
CGAAGGCATTTGTGCGAGATACAAATTCCGGGCTAAGCC
Found at i:100338263 original size:79 final size:77
Alignment explanation
Indices: 100338129--100338416 Score: 355
Period size: 79 Copynumber: 3.6 Consensus size: 77
100338119 GACTAAGATT
*
100338129 CGAAGGCATTTGTGCGAGATACAAATTCC-GAGCTAAGCCCGAAGGCATTTGTGCGAGATACTAA
1 CGAAGGCATTTGTGCGAGATATAAA-TCCGGA-CTAAGCCCGAAGGCATTTGTGCGAGATACTAA
*
100338193 TTCTGGGCTAAGCC
64 TTCCGGGCTAAGCC
* * *
100338207 CGAAGGCATTTGTGCGAGTTATTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACAAA
1 CGAAGGCATTTGTGCGAGATA-TAAATCCGGACTAAG-CCCGAAGGCATTTGTGCGAGATACTAA
100338272 TTCCGGGCTAAGCC
64 TTCCGGGCTAAGCC
* * * * *
100338286 CGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTATTAAA
1 CGAAGGCATTTGTGCGAGATA-TAAATCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
100338351 TCCGGGTTAAGTCC
65 TCCGGGCTAAG-CC
* * *
100338365 CGAAGGCATTTGTGCGAGTTAATATAA-CCGGGCTATGTCCCGAAGGCATTTG
1 CGAAGGCATTTGTGCGAGAT-ATA-AATCCGGACTAAG-CCCGAAGGCATTTG
100338417 AACGAGGAGC
Statistics
Matches: 185, Mismatches: 18, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
78 61 0.33
79 108 0.58
80 16 0.09
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (77 bp):
CGAAGGCATTTGTGCGAGATATAAATCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAATT
CCGGGCTAAGCC
Found at i:100338287 original size:118 final size:118
Alignment explanation
Indices: 100338076--100338416 Score: 485
Period size: 118 Copynumber: 2.9 Consensus size: 118
100338066 TTGAATGATG
* * * *
100338076 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGA-CAATATCCGGACTAAGATTCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTATTAA-ATCCGGACTAAGATCCGAAGGCAT
*
100338138 TTGTGCGAGATACAAATTCCGAGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
63 TTGTGCGAGATACAAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
100338194 TCTGGGCTAAGCCCGAAGGCATTTGTGCGAGTTATTAAATCCGGACTAAGATCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTATTAAATCCGGACTAAGATCCGAAGGCATTTG
100338259 TGCGAGATACAAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
66 TGCGAGATACAAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
**
100338312 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCATTT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTATTAAATCCGGACTAAGAT-CCGAAGGCATTT
* * * *
100338376 GTGCGAGTTA-ATATAACCGGGCTATGTCCCGAAGGCATTTG
65 GTGCGAGATACAAAT-TCCGGGCTAAG-CCCGAAGGCATTTG
100338417 AACGAGGAGC
Statistics
Matches: 204, Mismatches: 13, Indels: 11
0.89 0.06 0.05
Matches are distributed among these distances:
117 13 0.06
118 169 0.83
119 22 0.11
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (118 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTATTAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGATACAAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:100338438 original size:79 final size:77
Alignment explanation
Indices: 100338077--100338439 Score: 294
Period size: 79 Copynumber: 4.6 Consensus size: 77
100338067 TGAATGATGT
* ** **
100338077 CCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATTCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAG-GACTAA-ATCCGGGTTAAG-CCCGAAGGCATT
* *
100338139 TGTGCGAGATACA-AATT
62 TGTGCGAGTTA-ATAA-A
* * * * *
100338156 CCGAGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCTGGGCTAAGCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-GACTAAATCCGGGTTAAGCCCGAAGGCATTTGT
*
100338220 GCGAGTTATTAAA
65 GCGAGTTAATAAA
* * *
100338233 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGCTAAGCCCGAAGGCATT
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-GACTAAA-TCCGGGTTAAGCCCGAAGGCATT
* * *
100338296 TGTGCGAGATACTAATT
62 TGTGCGAGTTAATAA-A
* *
100338313 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-GACTAAATCCGGGTTAAG-CCCGAAGGCATTTG
100338377 TGCGAGTTAATATAA
64 TGCGAGTTAATA-AA
* ** *
100338392 CCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATATCC-GGTTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGA-CTAAATCCGGGTTAA
100338440 ATTCCGAAGG
Statistics
Matches: 237, Mismatches: 32, Indels: 30
0.79 0.11 0.10
Matches are distributed among these distances:
78 72 0.30
79 132 0.56
80 33 0.14
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.25
Consensus pattern (77 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGACTAAATCCGGGTTAAGCCCGAAGGCATTTGTG
CGAGTTAATAAA
Found at i:100346306 original size:27 final size:27
Alignment explanation
Indices: 100346275--100346329 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
100346265 GCATCTGATA
* *
100346275 CTGATTCTG-TATTGGGCTTAGGCCCAC
1 CTGATTCTGTTATTAGG-TAAGGCCCAC
100346302 CTGATTCTGTTATTAGGTAAGGCCCAC
1 CTGATTCTGTTATTAGGTAAGGCCCAC
100346329 C
1 C
100346330 GGATACTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 19 0.76
28 6 0.24
ACGTcount: A:0.18, C:0.25, G:0.24, T:0.33
Consensus pattern (27 bp):
CTGATTCTGTTATTAGGTAAGGCCCAC
Found at i:100348230 original size:27 final size:27
Alignment explanation
Indices: 100348200--100348259 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 27
100348190 ACTTACTAAA
100348200 ATACCCCCAAGTATG-AAAATTACCATT
1 ATACCCCCAAG-ATGCAAAATTACCATT
*
100348227 ATA-CCCCTAGATGCAAAATTACCATT
1 ATACCCCCAAGATGCAAAATTACCATT
100348253 ATACCCC
1 ATACCCC
100348260 TAGGGTTAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
25 3 0.10
26 21 0.70
27 6 0.20
ACGTcount: A:0.38, C:0.30, G:0.07, T:0.25
Consensus pattern (27 bp):
ATACCCCCAAGATGCAAAATTACCATT
Found at i:100348437 original size:28 final size:28
Alignment explanation
Indices: 100348367--100348460 Score: 138
Period size: 27 Copynumber: 3.4 Consensus size: 28
100348357 GAGGAAGCAT
100348367 TCTGGTGGCTCTGCCACAAATATTTG-A
1 TCTGGTGGCTCTGCCACAAATATTTGTA
* * *
100348394 TCTGGTAGCTCAGCCACAAATATTTGTT
1 TCTGGTGGCTCTGCCACAAATATTTGTA
100348422 TCTGGTGGCTCTGCCAC-AATATTTGTA
1 TCTGGTGGCTCTGCCACAAATATTTGTA
*
100348449 TCTGGTGACTCT
1 TCTGGTGGCTCT
100348461 ATCACAATAT
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 44 0.75
28 15 0.25
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.36
Consensus pattern (28 bp):
TCTGGTGGCTCTGCCACAAATATTTGTA
Found at i:100348467 original size:55 final size:54
Alignment explanation
Indices: 100348366--100348475 Score: 145
Period size: 55 Copynumber: 2.0 Consensus size: 54
100348356 GGAGGAAGCA
*
100348366 TTCTGGTGGCTCTGCCACAAATATTTGATCTGGTAGCTCAGCCACAAATATTTGT
1 TTCTGGTGGCTCTGCCACAAATATTTGATCTGGTAGCTCAGCCAC-AATATCTGT
*
100348421 TTCTGGTGGCTCTGCCAC-AATATTTGTATCTGGT-GACTCTA-TCACAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATTTG-ATCTGGTAG-CTC-AGCCACAATATCTGT
100348475 T
1 T
100348476 CTCGTAGCTA
Statistics
Matches: 50, Mismatches: 2, Indels: 7
0.85 0.03 0.12
Matches are distributed among these distances:
54 18 0.36
55 31 0.62
56 1 0.02
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (54 bp):
TTCTGGTGGCTCTGCCACAAATATTTGATCTGGTAGCTCAGCCACAATATCTGT
Found at i:100356952 original size:30 final size:30
Alignment explanation
Indices: 100356918--100356974 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
100356908 TAGTTAAAAT
100356918 TAAAATAATATAAATAAAGTTAAAATTTAG
1 TAAAATAATATAAATAAAGTTAAAATTTAG
100356948 TAAAATAATATAAATAAAGTTAAAATT
1 TAAAATAATATAAATAAAGTTAAAATT
100356975 CAATTTAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.33
Consensus pattern (30 bp):
TAAAATAATATAAATAAAGTTAAAATTTAG
Done.