Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 309 of 322
Found at i:102609611 original size:24 final size:24
Alignment explanation
Indices: 102609560--102609728 Score: 250
Period size: 24 Copynumber: 7.0 Consensus size: 24
102609550 GATTTATCAT
*
102609560 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
102609585 ATAACTGGGGAAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
102609609 ATAACCGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
102609633 ATAACTGGGGCATAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
*
102609658 ATAACTGAGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
102609682 ATAACTAGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
102609706 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
102609729 GCACTTCCTC
Statistics
Matches: 131, Mismatches: 11, Indels: 5
0.89 0.07 0.03
Matches are distributed among these distances:
24 96 0.73
25 35 0.27
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:102609661 original size:49 final size:48
Alignment explanation
Indices: 102609560--102609728 Score: 250
Period size: 49 Copynumber: 3.5 Consensus size: 48
102609550 GATTTATCAT
* * *
102609560 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGAAAAAGCCCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTA
*
102609609 ATAACCGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC-TTTTA
* *
102609658 ATAACTGAGGCATAAGCCCTTTTAATAACTAGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
102609706 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
102609729 GCACTTCCTC
Statistics
Matches: 110, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
48 54 0.49
49 56 0.51
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
Found at i:102609679 original size:73 final size:73
Alignment explanation
Indices: 102609580--102609728 Score: 253
Period size: 73 Copynumber: 2.0 Consensus size: 73
102609570 GCCTAGCCTC
* *
102609580 TTTTAATAACTGGGGAAAAAGCCCTTTTAATAACCGGGGCATAAGCCCTTTTAATAACTGGGGCA
1 TTTTAATAACTGAGGAAAAAGCCCTTTTAATAACCAGGGCATAAGCCCTTTTAATAACTGGGGCA
102609645 TAAGCCCT
66 TAAGCCCT
* * *
102609653 TTTTAATAACTGAGGCATAAGCCCTTTTAATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCA
1 TTTTAATAACTGAGGAAAAAGCCCTTTTAATAACCAGGGCATAAGCCCTTTTAATAACTGGGGCA
102609718 TAAGCCCT
66 TAAGCCCT
102609726 TTT
1 TTT
102609729 GCACTTCCTC
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
73 71 1.00
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (73 bp):
TTTTAATAACTGAGGAAAAAGCCCTTTTAATAACCAGGGCATAAGCCCTTTTAATAACTGGGGCA
TAAGCCCT
Found at i:102609803 original size:20 final size:20
Alignment explanation
Indices: 102609778--102609844 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
102609768 TTATGAATAC
102609778 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
102609798 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
102609818 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
102609838 ACCATGT
1 ATCATGT
102609845 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:102609809 original size:11 final size:11
Alignment explanation
Indices: 102609778--102609833 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
102609768 TTATGAATAC
102609778 ATCATGTGCAT
1 ATCATGTGCAT
*
102609789 ATCA--TACAT
1 ATCATGTGCAT
102609798 ATCATGTGCAT
1 ATCATGTGCAT
*
102609809 ATCA--TACAT
1 ATCATGTGCAT
*
102609818 GTCATGTGCAT
1 ATCATGTGCAT
102609829 ATCAT
1 ATCAT
102609834 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:102613770 original size:37 final size:39
Alignment explanation
Indices: 102613694--102613784 Score: 89
Period size: 39 Copynumber: 2.4 Consensus size: 39
102613684 TTTCTTATAT
* * *
102613694 TATATACATATAATATGCATTTTATTATTATAACACATA
1 TATATACATATAATATACATTTTAATATTAAAACACATA
*
102613733 TATATACATA-AATGTACATATTTAATA-TAAAAC-CATA
1 TATATACATATAATATACAT-TTTAATATTAAAACACATA
* *
102613770 TTTATCCTATATAAT
1 TATATAC-ATATAAT
102613785 GTCACCCACT
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
37 9 0.21
38 15 0.35
39 19 0.44
ACGTcount: A:0.45, C:0.11, G:0.02, T:0.42
Consensus pattern (39 bp):
TATATACATATAATATACATTTTAATATTAAAACACATA
Found at i:102615596 original size:16 final size:16
Alignment explanation
Indices: 102615572--102615606 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
102615562 GTAGCCAAGC
*
102615572 TTTCGGCTTTTCAGCA
1 TTTCAGCTTTTCAGCA
*
102615588 TTTCAGCTTTTCAGGA
1 TTTCAGCTTTTCAGCA
102615604 TTT
1 TTT
102615607 GCCGATCTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.14, C:0.20, G:0.17, T:0.49
Consensus pattern (16 bp):
TTTCAGCTTTTCAGCA
Found at i:102620248 original size:27 final size:27
Alignment explanation
Indices: 102620218--102620505 Score: 235
Period size: 27 Copynumber: 10.4 Consensus size: 27
102620208 TAATAAAGAG
*
102620218 AAATTACTGAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
102620245 AAATTACCGAAATACCCCCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
102620272 AAATTACCGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
102620299 AAATTACCGAAATACCC-CTATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
102620325 AAATTA-TCGAAATACCCTCGATTT-TG
1 AAATTACT-GAAATACCCTCGATTTGTA
* * * * *
102620351 AAATTATTGAAATACCCCCAATTTTTG
1 AAATTACTGAAATACCCTCGATTTGTA
** * *
102620378 AAATTACCAAAACACCCTCAATTTGTAA
1 AAATTACTGAAATACCCTCGATTTGT-A
* * *
102620406 ATAATTTGTAAAATTACCGAAATACCCTCGA-TTGTG
1 A-AA--T-T--ACTGA----AATACCCTCGATTTGTA
102620442 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
102620469 AAATTACTGAAATACCC-CTAATTTGTG
1 AAATTACTGAAATACCCTC-GATTTGTA
102620496 AAATTACTGA
1 AAATTACTGA
102620506 TGTGATCCAG
Statistics
Matches: 216, Mismatches: 28, Indels: 34
0.78 0.10 0.12
Matches are distributed among these distances:
26 56 0.26
27 132 0.61
28 1 0.00
29 2 0.01
30 3 0.01
31 1 0.00
32 2 0.01
33 1 0.00
34 2 0.01
35 2 0.01
36 1 0.00
37 4 0.02
38 9 0.04
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:102620344 original size:53 final size:52
Alignment explanation
Indices: 102620217--102620502 Score: 261
Period size: 53 Copynumber: 5.2 Consensus size: 52
102620207 ATAATAAAGA
*
102620217 GAAATTACTGAAATACCCTCAATTTGTAAAATTACCGAAATACCCCCGATTTGT
1 GAAATTAC-GAAATACCCTCGATTTGTAAAATTACCGAAATA-CCCCGATTTGT
* *
102620271 AAAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCCTATTTGT
1 GAAATTA-CGAAATACCCTCGATTTGTAAAATTACCGAAATACCCCGATTTGT
* * ** * *
102620324 AAAATTATCGAAATACCCTCGATTT-TGAAATTATTGAAATACCCCCAATTTTT
1 GAAATTA-CGAAATACCCTCGATTTGTAAAATTACCGAAATA-CCCCGATTTGT
* *
102620377 GAAATTACCAAAACACCCTCAATTTGTAAATAATTTGTAAAATTACCGAAATACCCTCGA-TTGT
1 GAAATTA-CGAAATACCCTC-----G------ATTTGTAAAATTACCGAAATACCC-CGATTTGT
* *
102620441 GAAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACCCCTAATTTGT
1 GAAATTAC-GAAATACCCTCGATTTGTAAAATTACCGAAATACCCC-GATTTGT
102620495 GAAATTAC
1 GAAATTAC
102620503 TGATGTGATC
Statistics
Matches: 192, Mismatches: 22, Indels: 36
0.77 0.09 0.14
Matches are distributed among these distances:
52 14 0.07
53 83 0.43
54 50 0.26
55 1 0.01
58 1 0.01
59 1 0.01
63 1 0.01
64 26 0.14
65 15 0.08
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.31
Consensus pattern (52 bp):
GAAATTACGAAATACCCTCGATTTGTAAAATTACCGAAATACCCCGATTTGT
Found at i:102620492 original size:91 final size:92
Alignment explanation
Indices: 102620318--102620499 Score: 253
Period size: 91 Copynumber: 2.0 Consensus size: 92
102620308 AAATACCCCT
* * * * *
102620318 ATTTGTAAAATTATCGAAATACCCTCGATTTTGAAATTATTGAAATACCCCCAATTTTTGAAATT
1 ATTTGTAAAATTACCGAAATACCCTCGATTGTGAAATTACTGAAATACCCCCAATTTGTAAAATT
102620383 ACCAAAACACCCTCAATTTGT-AAATA
66 ACCAAAACACCCTCAATTTGTGAAATA
* *
102620409 ATTTGTAAAATTACCGAAATACCCTCGATTGTGAAATTACTGAAATACCCTCGATTTGTAAAATT
1 ATTTGTAAAATTACCGAAATACCCTCGATTGTGAAATTACTGAAATACCCCCAATTTGTAAAATT
*
102620474 ACTGAAATAC-CCCT-AATTTGTGAAAT
66 AC-CAAA-ACACCCTCAATTTGTGAAAT
102620500 TACTGATGTG
Statistics
Matches: 80, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
91 67 0.84
92 11 0.14
93 2 0.03
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.34
Consensus pattern (92 bp):
ATTTGTAAAATTACCGAAATACCCTCGATTGTGAAATTACTGAAATACCCCCAATTTGTAAAATT
ACCAAAACACCCTCAATTTGTGAAATA
Found at i:102621829 original size:10 final size:10
Alignment explanation
Indices: 102621811--102621861 Score: 57
Period size: 10 Copynumber: 5.0 Consensus size: 10
102621801 AAATGAAAAA
*
102621811 GAAATGAGCT
1 GAAACGAGCT
102621821 GAAACGAGCT
1 GAAACGAGCT
*
102621831 AAAATCGAGCT
1 GAAA-CGAGCT
*
102621842 TAAACGAGCT
1 GAAACGAGCT
*
102621852 GAAAAGAGCT
1 GAAACGAGCT
102621862 CAAGTGAGCT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
10 26 0.74
11 9 0.26
ACGTcount: A:0.43, C:0.16, G:0.25, T:0.16
Consensus pattern (10 bp):
GAAACGAGCT
Found at i:102621840 original size:21 final size:21
Alignment explanation
Indices: 102621812--102621861 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
102621802 AATGAAAAAG
102621812 AAATGAGCTGAAACGAGCT-A
1 AAATGAGCTGAAACGAGCTGA
*
102621832 AAATCGAGCTTAAACGAGCTGA
1 AAAT-GAGCTGAAACGAGCTGA
102621854 AAA-GAGCT
1 AAATGAGCT
102621862 CAAGTGAGCT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
20 9 0.33
21 14 0.52
22 4 0.15
ACGTcount: A:0.44, C:0.16, G:0.24, T:0.16
Consensus pattern (21 bp):
AAATGAGCTGAAACGAGCTGA
Found at i:102622160 original size:27 final size:27
Alignment explanation
Indices: 102622122--102622246 Score: 178
Period size: 27 Copynumber: 4.6 Consensus size: 27
102622112 TGCTTACATC
* *
102622122 AATTATCGAAACACCCTCAATTTGTAA
1 AATTACCGAAACACCCTCGATTTGTAA
* *
102622149 AATTACCGAAACACCTTTGATTTGTAA
1 AATTACCGAAACACCCTCGATTTGTAA
* *
102622176 AATTACTGAAATACCCTCGATTTGTAA
1 AATTACCGAAACACCCTCGATTTGTAA
*
102622203 AATTACCTAAACACCCTCGATTTGTAA
1 AATTACCGAAACACCCTCGATTTGTAA
*
102622230 AATTACCGAAATACCCT
1 AATTACCGAAACACCCT
102622247 TGTAGTGTAA
Statistics
Matches: 85, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 85 1.00
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACCGAAACACCCTCGATTTGTAA
Found at i:102622255 original size:27 final size:27
Alignment explanation
Indices: 102622122--102622272 Score: 160
Period size: 27 Copynumber: 5.6 Consensus size: 27
102622112 TGCTTACATC
* * **
102622122 AATTATCGAAACACCCTCAATTTGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
* *
102622149 AATTACCGAAACACCTTTGATTTGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
* *
102622176 AATTACTGAAATACCCTCGATTTGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
* * *
102622203 AATTACCTAAACACCCTCGATTTGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
*
102622230 AATTACCGAAATACCCTTG-TAGTGTAA
1 AATTACCGAAATACCCTTGAT-TTGTAA
* *
102622257 AATGACCGATATACCC
1 AATTACCGAAATACCC
102622273 CTGTAGGGTA
Statistics
Matches: 106, Mismatches: 17, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 105 0.99
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.30
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGATTTGTAA
Found at i:102622277 original size:27 final size:27
Alignment explanation
Indices: 102622225--102622289 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
102622215 ACCCTCGATT
* *
102622225 TGTAAAATTACCGAAATACCCTTGTAG
1 TGTAAAATGACCGAAATACCCCTGTAG
*
102622252 TGTAAAATGACCGATATACCCCTGTAG
1 TGTAAAATGACCGAAATACCCCTGTAG
*
102622279 GGTAAAATGAC
1 TGTAAAATGAC
102622290 TGTTTTGCCC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.26
Consensus pattern (27 bp):
TGTAAAATGACCGAAATACCCCTGTAG
Found at i:102629979 original size:29 final size:28
Alignment explanation
Indices: 102629916--102629995 Score: 106
Period size: 29 Copynumber: 2.8 Consensus size: 28
102629906 TATACATGCT
* *
102629916 TATGGCCCACTAGGCCCAATCTCATTTA
1 TATGGCCCACTAGGCCCAATCACATCTA
*
102629944 TGTGGCCCACTAGGCCCAAATCACATCTA
1 TATGGCCCACTAGGCCC-AATCACATCTA
* *
102629973 TATGGCCTATTAGGCCCAATCAC
1 TATGGCCCACTAGGCCCAATCAC
102629996 TTTTACAGTC
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 22 0.49
29 23 0.51
ACGTcount: A:0.26, C:0.33, G:0.16, T:0.25
Consensus pattern (28 bp):
TATGGCCCACTAGGCCCAATCACATCTA
Found at i:102630236 original size:16 final size:16
Alignment explanation
Indices: 102630215--102630257 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
102630205 GTAGCCAAAC
*
102630215 TTTTAGCTTTTCGGCA
1 TTTTAGCTTTTCGACA
102630231 TTTTAGCTTTTCGACA
1 TTTTAGCTTTTCGACA
*
102630247 TTTCAGCTTTT
1 TTTTAGCTTTT
102630258 TGAAATTTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.14, C:0.19, G:0.14, T:0.53
Consensus pattern (16 bp):
TTTTAGCTTTTCGACA
Found at i:102632266 original size:40 final size:40
Alignment explanation
Indices: 102632185--102632367 Score: 235
Period size: 40 Copynumber: 4.6 Consensus size: 40
102632175 TATTCGGATG
* *
102632185 ATATCCGGCCTAAGACCCGAAGGCATTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
102632226 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
102632266 ATATCCGGGCTAAGTCCCAAAGGAATTTTTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * *
102632306 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
102632346 ATAT-CTGGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
102632368 TACTTGGGTT
Statistics
Matches: 125, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 14 0.11
40 86 0.69
41 25 0.20
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:102636698 original size:47 final size:47
Alignment explanation
Indices: 102636641--102636944 Score: 437
Period size: 47 Copynumber: 6.4 Consensus size: 47
102636631 ATTGATGTAC
* * *
102636641 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * *
102636688 AAGTATATATATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGA
1 AAG--TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * * *
102636737 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
102636784 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * *
102636831 AAGTGTATATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
102636878 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
102636925 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
102636945 TCCCGAAGGG
Statistics
Matches: 238, Mismatches: 17, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
47 192 0.81
49 46 0.19
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:102641354 original size:13 final size:13
Alignment explanation
Indices: 102641336--102641374 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
102641326 ATATTATAAT
*
102641336 TATTTTGTGTTAA
1 TATTTTATGTTAA
*
102641349 TATTTTATGCTAA
1 TATTTTATGTTAA
102641362 TAATTTTATGTTA
1 T-ATTTTATGTTA
102641375 CAAAATGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.28, C:0.03, G:0.10, T:0.59
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:102642840 original size:40 final size:40
Alignment explanation
Indices: 102642763--102642986 Score: 299
Period size: 40 Copynumber: 5.6 Consensus size: 40
102642753 TATTCGGATG
* *
102642763 ATATCCGGGCTAAGACCTGAAGGCACTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
* * *
102642804 ATATCTGGGTTAAGTCCCGAAGGCATTTGTGCTAGTGACG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
102642844 ATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
* *
102642885 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
102642925 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGATTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACT
* *
102642965 ATATCC-GGTTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
102642987 TACTTGGGTT
Statistics
Matches: 165, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
39 14 0.08
40 91 0.55
41 60 0.36
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:102642899 original size:81 final size:80
Alignment explanation
Indices: 102642762--102642986 Score: 319
Period size: 81 Copynumber: 2.8 Consensus size: 80
102642752 TTATTCGGAT
* *
102642762 GATATCCGGGCTAAGACCTGAAGGCACTTTGTGCTAGTGACTATATCTGGGTTAAGTCCCGAAGG
1 GATATCCGGGCTAAGACCCGAAGGCA-TTTGTGCTAGTGACTATATCCGGGTTAAGTCCCGAAGG
*
102642827 CATTTGTGCTAGTGAC
65 CATTTGTGCGAGTGAC
*
102642843 GATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGG
1 GATATCCGGGCTAAGACCCGAAGGCA-TTTGTGCTAGTGACTATATCCGGGTTAAGTCCCGAAGG
*
102642908 CATTTGTGCGAGTTAC
65 CATTTGTGCGAGTGAC
* * * * *
102642924 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGATTTG-CTATATCC-GGTTAAATCCCGAAGG
1 GATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGTTAAGTCCCGAAGG
102642987 TACTTGGGTT
Statistics
Matches: 131, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
79 14 0.11
80 16 0.12
81 101 0.77
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (80 bp):
GATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGTTAAGTCCCGAAGGC
ATTTGTGCGAGTGAC
Found at i:102648605 original size:56 final size:56
Alignment explanation
Indices: 102648519--102648630 Score: 215
Period size: 56 Copynumber: 2.0 Consensus size: 56
102648509 GATCTATTAG
*
102648519 TGCATGTTATGAAAATAATGGGTTTGCATGTCAAAATTTCACCTATGACAAGTAGT
1 TGCATGTTATGAAAATAATGGGTTTGCATGTCAAAATTGCACCTATGACAAGTAGT
102648575 TGCATGTTATGAAAATAATGGGTTTGCATGTCAAAATTGCACCTATGACAAGTAGT
1 TGCATGTTATGAAAATAATGGGTTTGCATGTCAAAATTGCACCTATGACAAGTAGT
102648631 GGCCGGCCAT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (56 bp):
TGCATGTTATGAAAATAATGGGTTTGCATGTCAAAATTGCACCTATGACAAGTAGT
Found at i:102649293 original size:48 final size:48
Alignment explanation
Indices: 102649222--102649441 Score: 377
Period size: 48 Copynumber: 4.6 Consensus size: 48
102649212 AGTGGGAAGA
*
102649222 AATGGCTAATGTGAAATACGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
* * *
102649270 AATGGCTAATGTGGAATAGGTATGAGATAGGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
102649318 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
*
102649366 AATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
* *
102649414 AATGGCTAGTGTGAAATATGTAGGAGAT
1 AATGGCTAATGTGAAATATGTATGAGAT
102649442 GTGTGTATAT
Statistics
Matches: 162, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 162 1.00
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.30
Consensus pattern (48 bp):
AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
Found at i:102649329 original size:22 final size:22
Alignment explanation
Indices: 102649256--102649330 Score: 64
Period size: 22 Copynumber: 3.2 Consensus size: 22
102649246 AGATATGTAT
102649256 ATGTGGTAAAGCCGAATGGCTA
1 ATGTGGTAAAGCCGAATGGCTA
**
102649278 ATGTGG-AATAGGTATGAGATAGG-TA
1 ATGTGGTAA-A-G-CCGA-AT-GGCTA
102649303 TATGTGGTAAAGCCGAATGGCTA
1 -ATGTGGTAAAGCCGAATGGCTA
102649326 ATGTG
1 ATGTG
102649331 AAATATGTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 16
0.67 0.07 0.26
Matches are distributed among these distances:
21 2 0.05
22 14 0.34
23 5 0.12
24 4 0.10
25 5 0.12
26 9 0.22
27 2 0.05
ACGTcount: A:0.32, C:0.08, G:0.33, T:0.27
Consensus pattern (22 bp):
ATGTGGTAAAGCCGAATGGCTA
Found at i:102652344 original size:47 final size:47
Alignment explanation
Indices: 102652293--102652584 Score: 449
Period size: 47 Copynumber: 6.2 Consensus size: 47
102652283 TTAGGATTTT
* * * * *
102652293 ATGTGATGGATGTGAACATGCCTTTGTGTGATAAGACCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
102652340 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
102652387 ATGTGATAAATGTGAACATGTATATATGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
102652434 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
102652481 ATGTGACGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
102652528 ATGTGATAAATGTGAACATGCATACATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
102652575 ATGTGATGAA
1 ATGTGATGAA
102652585 CATGGATGTG
Statistics
Matches: 224, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 224 1.00
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:102652581 original size:22 final size:22
Alignment explanation
Indices: 102652506--102652581 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
102652496 ACATGCATAT
*
102652506 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCAGAATGGCCA
*
102652528 ATGTGATAAATGTG-A-ACAT-GCATA
1 ATGTGAT-AA-G-GCAGA-ATGGC-CA
102652552 CATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
102652575 ATGTGAT
1 ATGTGAT
102652582 GAACATGGAT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.24
Consensus pattern (22 bp):
ATGTGATAAGGCAGAATGGCCA
Found at i:102652618 original size:141 final size:141
Alignment explanation
Indices: 102652332--102652618 Score: 421
Period size: 141 Copynumber: 2.0 Consensus size: 141
102652322 GATAAGACCG
* * *
102652332 AATGGCCAATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATAAA
1 AATGGCCAATGTGACGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATAAA
* * * ** *
102652397 TGTGAACATGTATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAACATGCATATGTG
66 TGTGAACATGCATACATGTGATAAGGCAGAATGACCAATGTGATGAACATGAACATGCATATATG
* * *
102652462 TGATAAGGCCG
131 TGAGAAAGCCA
102652473 AATGGCCAATGTGACGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATAAA
1 AATGGCCAATGTGACGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATAAA
* * ** *
102652538 TGTGAACATGCATACATGTGATAAGGCAGAATGGCCAATGTGATGAACATGGATGTGTATATATG
66 TGTGAACATGCATACATGTGATAAGGCAGAATGACCAATGTGATGAACATGAACATGCATATATG
102652603 TGAGAAAGCCA
131 TGAGAAAGCCA
102652614 AATGG
1 AATGG
102652619 TTAATGCGAA
Statistics
Matches: 129, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
141 129 1.00
ACGTcount: A:0.36, C:0.12, G:0.27, T:0.25
Consensus pattern (141 bp):
AATGGCCAATGTGACGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATAAA
TGTGAACATGCATACATGTGATAAGGCAGAATGACCAATGTGATGAACATGAACATGCATATATG
TGAGAAAGCCA
Found at i:102652657 original size:46 final size:46
Alignment explanation
Indices: 102652598--102652688 Score: 121
Period size: 46 Copynumber: 2.0 Consensus size: 46
102652588 GGATGTGTAT
* **
102652598 ATATGTGAGAAAGCCAAATGGTTAATGCGAAATGTGTATGAGATGG
1 ATATGTGAGAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
* *
102652644 ATATGTG-GTAAAGCCAAATGGCTAATGTGAGACATGTATGAGATG
1 ATATGTGAG-AAAGCCAAATGGCTAATGCGAAACATGTATGAGATG
102652689 TGTATATATA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
45 1 0.03
46 38 0.97
ACGTcount: A:0.36, C:0.08, G:0.30, T:0.26
Consensus pattern (46 bp):
ATATGTGAGAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
Found at i:102654943 original size:46 final size:46
Alignment explanation
Indices: 102654890--102654982 Score: 168
Period size: 46 Copynumber: 2.0 Consensus size: 46
102654880 TGCAATTTTG
* *
102654890 AAAGAGTGTTATGACTATAAATGTGATTTTTGTATGTGGCTATGGA
1 AAAGAGTGTTACGACTATAAATGTGATCTTTGTATGTGGCTATGGA
102654936 AAAGAGTGTTACGACTATAAATGTGATCTTTGTATGTGGCTATGGA
1 AAAGAGTGTTACGACTATAAATGTGATCTTTGTATGTGGCTATGGA
102654982 A
1 A
102654983 CTGAAAGTTG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.37
Consensus pattern (46 bp):
AAAGAGTGTTACGACTATAAATGTGATCTTTGTATGTGGCTATGGA
Found at i:102655143 original size:40 final size:40
Alignment explanation
Indices: 102655095--102655246 Score: 241
Period size: 40 Copynumber: 3.8 Consensus size: 40
102655085 TTATATAGCT
* * *
102655095 GGGCTAAGTCCCGAAGAGCATTTGTGCTGATGCTATATCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCC
*
102655135 GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCC
102655175 GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCC
* * *
102655215 GGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
102655247 ATGTGTATTC
Statistics
Matches: 104, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.20, C:0.22, G:0.32, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCC
Found at i:102655460 original size:25 final size:25
Alignment explanation
Indices: 102655410--102655460 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
102655400 TGTGTAACAA
* *
102655410 CAAATGAATAGGGGCACTATATGTG
1 CAAATGAATAGAGGCACTAGATGTG
*
102655435 CAAATGATTAGAGGCACTGAGA-GTG
1 CAAATGAATAGAGGCACT-AGATGTG
102655460 C
1 C
102655461 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTAGATGTG
Found at i:102657297 original size:48 final size:48
Alignment explanation
Indices: 102657221--102658160 Score: 1781
Period size: 48 Copynumber: 19.6 Consensus size: 48
102657211 AGTGGGAAGA
* *
102657221 AATGGCTAATGTGAAATACGTATAAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
102657269 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
102657317 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
102657365 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
102657413 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
102657461 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
102657509 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
102657557 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
102657605 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
* * *
102657653 AATGGCTAATGTGAAATATGTATGAGATAGGCATATGTGGTAAAGCCA
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
* *
102657701 AATAGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGTCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
* *
102657749 AATGGCTAATGTTAAATACGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
102657797 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
102657845 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
102657893 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
102657941 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
102657989 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
102658037 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
102658085 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
* *
102658133 AATGGCTAGTGTGAAATATGTAGGAGAT
1 AATGGCTAATGTGAAATATGTATGAGAT
102658161 GTGTGTATAT
Statistics
Matches: 874, Mismatches: 18, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 874 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
Found at i:102663229 original size:28 final size:28
Alignment explanation
Indices: 102663197--102663324 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
102663187 ATAGTAAGTC
*
102663197 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
102663225 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
102663254 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
102663282 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
102663311 CGCACACTTAGTGC
1 CGCACACTTAGTGC
102663325 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:102663287 original size:57 final size:57
Alignment explanation
Indices: 102663196--102663324 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
102663186 TATAGTAAGT
*
102663196 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
102663253 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
102663310 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
102663325 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:102674445 original size:49 final size:49
Alignment explanation
Indices: 102674384--102674557 Score: 240
Period size: 49 Copynumber: 3.5 Consensus size: 49
102674374 CTAGTACGCA
* *
102674384 TAGTAGCCTGCACTTAGTACTACAAATGCGACCAATTATCCGGTCCACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
* * * *** * *
102674433 TAGTAGCTTGCACTTAGTACTACGCATGTGACCTAACCGTCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACACG
*
102674483 TAGTAGCCTGCACTTAGTACTACACATACGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
102674532 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
102674558 CGTGACCTCA
Statistics
Matches: 105, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
49 66 0.63
50 39 0.37
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
Found at i:102674563 original size:99 final size:99
Alignment explanation
Indices: 102674384--102674565 Score: 310
Period size: 99 Copynumber: 1.8 Consensus size: 99
102674374 CTAGTACGCA
* * *
102674384 TAGTAGCCTGCACTTAGTACTACAAATGCGACCAATTATCCGGTCCACGTAGTAGCTTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACAAATACGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
* *
102674449 GTACTACGCATGTGACCTAACCGTCTGATACACG
66 GTACTACACACGTGACCTAACCGTCTGATACACG
*
102674483 TAGTAGCCTGCACTTAGTACTACACATACGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACAAATACGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
102674548 GTACTACACACGTGACCT
66 GTACTACACACGTGACCT
102674566 CACAATAGAT
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
99 77 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACAAATACGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
GTACTACACACGTGACCTAACCGTCTGATACACG
Found at i:102678323 original size:46 final size:46
Alignment explanation
Indices: 102678156--102678331 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
102678146 TGTAACTCGC
* * * *
102678156 CCATAAGTGAACTCTGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTTGCAT
* * * *
102678202 CCATGAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* * **
102678252 -C-TCA-CGAACTCGGTTTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
102678295 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
102678332 TGCCCAAATA
Statistics
Matches: 104, Mismatches: 18, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 4 0.04
46 58 0.56
47 26 0.25
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:102683334 original size:40 final size:40
Alignment explanation
Indices: 102683279--102683461 Score: 269
Period size: 40 Copynumber: 4.6 Consensus size: 40
102683269 CGGATGATAA
* * *
102683279 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* * *
102683319 CCGGGCTAAGTCCCGAAGTCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
102683359 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
102683399 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
102683439 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
102683462 CGAGTAAGTA
Statistics
Matches: 129, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 129 1.00
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:102683482 original size:80 final size:79
Alignment explanation
Indices: 102683279--102683496 Score: 253
Period size: 80 Copynumber: 2.7 Consensus size: 79
102683269 CGGATGATAA
* * * *
102683279 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGT-GACTAGTTCCGGGCTAAGTCCCGAAGTCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGAG-TAGTAG-CTATTTCCGGGCTAAGTCCCGAAGGCATTG
*
102683343 GTGCGAGTTATTACAT
64 GTGCGAGTTACTACAT
* * *
102683359 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTA-CTATATCCGGGCTAAGTCCCGAAGGCATTG
1 CCGGGCTAAGTCCCGAAGGCATTTGAG-TAG-TAGCTATTTCCGGGCTAAGTCCCGAAGGCATTG
*
102683423 GTGCGAGTTACTATAT
64 GTGCGAGTTACTACAT
* * * *
102683439 CCGGGCTATGTCCCGAAGGCATTCGAGTAAGTAGCTATTTCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGT-AGTAGCTATTTCCGGGCTAAGTCCCGAAGG
102683497 TACTTGGCTT
Statistics
Matches: 119, Mismatches: 15, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
79 16 0.13
80 102 0.86
81 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGTAGTAGCTATTTCCGGGCTAAGTCCCGAAGGCATTGGT
GCGAGTTACTACAT
Found at i:102686563 original size:24 final size:24
Alignment explanation
Indices: 102686536--102686584 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
102686526 TGACTAACAT
102686536 GTTTGATTGGATGCATGTGTTTAG
1 GTTTGATTGGATGCATGTGTTTAG
102686560 GTTTGATTGGATGCATGTGTTTAG
1 GTTTGATTGGATGCATGTGTTTAG
102686584 G
1 G
102686585 CAATTTAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.16, C:0.04, G:0.35, T:0.45
Consensus pattern (24 bp):
GTTTGATTGGATGCATGTGTTTAG
Found at i:102687168 original size:47 final size:46
Alignment explanation
Indices: 102687117--102687270 Score: 139
Period size: 47 Copynumber: 3.3 Consensus size: 46
102687107 TAGTTCAAGT
* *
102687117 ATTTAATTTGTCTTCAA-TTTATTTAATATGTTCTAATTGGTTCAGAA
1 ATTTAATTTGTC-T-AAGTTAATTTAATATGTTCTAATTAGTTCAGAA
* * * **
102687164 ATTTAATTTATCTAAAGTTCATCTAATATGTTCTAATTAGTTCAGCT
1 ATTTAATTTGTCT-AAGTTAATTTAATATGTTCTAATTAGTTCAGAA
* * ** * **
102687211 ATTTAATATGTCCTAAGTTAATTTAATATGTTTTAGCTAGTACAGCT
1 ATTTAATTTGT-CTAAGTTAATTTAATATGTTCTAATTAGTTCAGAA
102687258 ATTTAATTTGTCT
1 ATTTAATTTGTCT
102687271 TAGCTTATTA
Statistics
Matches: 89, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
46 5 0.06
47 82 0.92
48 2 0.02
ACGTcount: A:0.31, C:0.10, G:0.10, T:0.49
Consensus pattern (46 bp):
ATTTAATTTGTCTAAGTTAATTTAATATGTTCTAATTAGTTCAGAA
Found at i:102687300 original size:25 final size:25
Alignment explanation
Indices: 102687272--102687320 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
102687262 AATTTGTCTT
*
102687272 AGCTTATTACAACTTAATTAGCTGA
1 AGCTCATTACAACTTAATTAGCTGA
102687297 AGCTCATTACAACTTAATTAGCTG
1 AGCTCATTACAACTTAATTAGCTG
102687321 GTTGAGTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (25 bp):
AGCTCATTACAACTTAATTAGCTGA
Found at i:102687367 original size:19 final size:18
Alignment explanation
Indices: 102687327--102687369 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
102687317 GCTGGTTGAG
102687327 TTAATTTTCTAGCTGAAT
1 TTAATTTTCTAGCTGAAT
102687345 TTAAGTTTTCCTAGCTGAA-
1 TTAA-TTTT-CTAGCTGAAT
102687364 TTAATT
1 TTAATT
102687370 GTGTTTTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 6 0.26
19 8 0.35
20 9 0.39
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.49
Consensus pattern (18 bp):
TTAATTTTCTAGCTGAAT
Found at i:102689953 original size:23 final size:23
Alignment explanation
Indices: 102689927--102689970 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
102689917 TATAATCATA
102689927 TCAAAATCATAACAAAACATAAG
1 TCAAAATCATAACAAAACATAAG
* *
102689950 TCAAAGTCATACCAAAACATA
1 TCAAAATCATAACAAAACATA
102689971 TGTTACATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.57, C:0.20, G:0.05, T:0.18
Consensus pattern (23 bp):
TCAAAATCATAACAAAACATAAG
Found at i:102690799 original size:42 final size:42
Alignment explanation
Indices: 102690699--102690860 Score: 168
Period size: 43 Copynumber: 3.8 Consensus size: 42
102690689 AGCTCGTACA
* *
102690699 ATGCCAATGTCCCAGACATGGTCATACACGTAATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATA-CG
* * *
102690742 ATGCCACTATCCCAGACAGGGTCTTACACGAAATCAAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATACG
* *
102690784 ATGCCAATGTCCCAGAAATGGTCTTACATGTAAATCATAACT-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AAATCA-AA-TACG
* *
102690828 ATGCCAGCT-TCCCAGACGTGGT-TGTACACGAAA
1 ATGCCA-ATGTCCCAGACATGGTCT-TACACGAAA
102690861 ACACATATCG
Statistics
Matches: 100, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
42 27 0.27
43 45 0.45
44 26 0.26
45 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATACG
Found at i:102690841 original size:86 final size:85
Alignment explanation
Indices: 102690699--102690860 Score: 215
Period size: 86 Copynumber: 1.9 Consensus size: 85
102690689 AGCTCGTACA
*
102690699 ATGCCAATGTCCCAGACATGGTCATACACGTAATCAAATATCGATGCCACTATCCCAGACAG-GG
1 ATGCCAATGTCCCAGAAATGGTCATACACGTAATCAAATATCGATGCCACTATCCCAGAC-GTGG
102690763 TCT-TACACGAAATCAAATACG
65 T-TGTACACGAAATCAAATACG
* * *
102690784 ATGCCAATGTCCCAGAAATGGTCTTACATGTAAATCATAA-CTCGATGCCAGCT-TCCCAGACGT
1 ATGCCAATGTCCCAGAAATGGTCATACACGT-AATCA-AATATCGATGCCA-CTATCCCAGACGT
102690847 GGTTGTACACGAAA
63 GGTTGTACACGAAA
102690861 ACACATATCG
Statistics
Matches: 68, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
85 30 0.44
86 34 0.50
87 4 0.06
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (85 bp):
ATGCCAATGTCCCAGAAATGGTCATACACGTAATCAAATATCGATGCCACTATCCCAGACGTGGT
TGTACACGAAATCAAATACG
Found at i:102695090 original size:20 final size:20
Alignment explanation
Indices: 102695039--102695096 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
102695029 TAGCTCGTCC
* *
102695039 AGTTCACAACCAGCTCAGCA
1 AGTTCACATCCAGCTCAACA
* ** *
102695059 AGCTCAGTTCCAACTCAACA
1 AGTTCACATCCAGCTCAACA
102695079 AGTTCACATCCAGCTCAA
1 AGTTCACATCCAGCTCAA
102695097 TTTTAGCTCA
Statistics
Matches: 28, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.34, C:0.34, G:0.12, T:0.19
Consensus pattern (20 bp):
AGTTCACATCCAGCTCAACA
Found at i:102714997 original size:43 final size:44
Alignment explanation
Indices: 102714897--102714997 Score: 127
Period size: 42 Copynumber: 2.4 Consensus size: 44
102714887 CCCAGATGTA
* **
102714897 GTCTTACGTGT-AATCAAATATCAATGCCACTGTCCCAGACAGG
1 GTCTTACGTGTAAATCAAATATCAATGCCAATAACCCAGACAGG
* *
102714940 GTCTTACATG-AAATCAAATA-CAATGCCAATAACCCAGACATG
1 GTCTTACGTGTAAATCAAATATCAATGCCAATAACCCAGACAGG
*
102714982 GTCTTACGCGTAAATC
1 GTCTTACGTGTAAATC
102714998 GTAAGTAGAT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
42 26 0.53
43 23 0.47
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.25
Consensus pattern (44 bp):
GTCTTACGTGTAAATCAAATATCAATGCCAATAACCCAGACAGG
Found at i:102717650 original size:6 final size:6
Alignment explanation
Indices: 102717641--102717700 Score: 50
Period size: 6 Copynumber: 9.7 Consensus size: 6
102717631 TAGAAAAATC
* * * *
102717641 AAAAGA AAAAGA ACAAGA AAAA-A AGAAATA GAAAGA AAGAAAA AAAAGAA
1 AAAAGA AAAAGA AAAAGA AAAAGA A-AAAGA AAAAGA AA-AAGA AAAAG-A
102717691 AAAAGA AAAA
1 AAAAGA AAAA
102717701 AAGAGAGGAA
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
5 2 0.05
6 29 0.67
7 12 0.28
ACGTcount: A:0.82, C:0.02, G:0.15, T:0.02
Consensus pattern (6 bp):
AAAAGA
Found at i:102717665 original size:14 final size:13
Alignment explanation
Indices: 102717646--102717704 Score: 68
Period size: 14 Copynumber: 4.5 Consensus size: 13
102717636 AAATCAAAAG
102717646 AAAAAGAACAAGAA
1 AAAAAGAA-AAGAA
102717660 AAAAAGAAATAGAA
1 AAAAAGAAA-AGAA
*
102717674 AGAAAGAAAA-AA
1 AAAAAGAAAAGAA
*
102717686 AAGAA-AAAAGAA
1 AAAAAGAAAAGAA
102717698 AAAAAGA
1 AAAAAGA
102717705 GAGGAAAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
11 4 0.11
12 11 0.29
13 3 0.08
14 20 0.53
ACGTcount: A:0.81, C:0.02, G:0.15, T:0.02
Consensus pattern (13 bp):
AAAAAGAAAAGAA
Found at i:102717668 original size:8 final size:8
Alignment explanation
Indices: 102717655--102717704 Score: 52
Period size: 8 Copynumber: 6.5 Consensus size: 8
102717645 GAAAAAGAAC
102717655 AAGAAAAA
1 AAGAAAAA
102717663 AAG--AAA
1 AAGAAAAA
* *
102717669 TAGAAAGA
1 AAGAAAAA
102717677 AAGAAAAA
1 AAGAAAAA
102717685 AA-AGAAAA
1 AAGA-AAAA
102717693 AAGAAAAA
1 AAGAAAAA
102717701 AAGA
1 AAGA
102717705 GAGGAAAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
6 5 0.15
7 1 0.03
8 27 0.79
9 1 0.03
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (8 bp):
AAGAAAAA
Found at i:102717676 original size:30 final size:30
Alignment explanation
Indices: 102717642--102717698 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
102717632 AGAAAAATCA
* *
102717642 AAAGAAA-AAGAACAAGAAAAAAAGAAATAG
1 AAAGAAAGAAAAAAAAG-AAAAAAGAAATAG
102717672 AAAGAAAGAAAAAAAAGAAAAAAGAAA
1 AAAGAAAGAAAAAAAAGAAAAAAGAAA
102717699 AAAAGAGAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 17 0.71
31 7 0.29
ACGTcount: A:0.81, C:0.02, G:0.16, T:0.02
Consensus pattern (30 bp):
AAAGAAAGAAAAAAAAGAAAAAAGAAATAG
Found at i:102717697 original size:24 final size:23
Alignment explanation
Indices: 102717646--102717704 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 23
102717636 AAATCAAAAG
*
102717646 AAAAAGAACAAGAAAAAAAGAAA
1 AAAAAGAAAAAGAAAAAAAGAAA
* *
102717669 TAGAAAGAAAGA-AAAAAAAGAAA
1 -AAAAAGAAAAAGAAAAAAAGAAA
102717692 AAAGAA-AAAAAGA
1 AAA-AAGAAAAAGA
102717705 GAGGAAAAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
22 6 0.21
23 14 0.50
24 8 0.29
ACGTcount: A:0.81, C:0.02, G:0.15, T:0.02
Consensus pattern (23 bp):
AAAAAGAAAAAGAAAAAAAGAAA
Found at i:102719525 original size:299 final size:299
Alignment explanation
Indices: 102718987--102719584 Score: 1178
Period size: 299 Copynumber: 2.0 Consensus size: 299
102718977 TTTCAGTGAG
102718987 AAACTCAACGAGGCCGCTCTTAATTATCCCACATTTGACAAGGAGATGTATGCCATAATTCAGGC
1 AAACTCAACGAGGCCGCTCTTAATTATCCCACATTTGACAAGGAGATGTATGCCATAATTCAGGC
102719052 GTTGGAGACATAGCAGCACTATCTTTGGCCTAAGGAATTTGTTATACATACGGATCACGAAGCAT
66 GTTGGAGACATAGCAGCACTATCTTTGGCCTAAGGAATTTGTTATACATACGGATCACGAAGCAT
102719117 TGAAGCACCTTAAGGGACAAAACAAGCTAAACAAGTGCCATGCTAAATGGGTAGAGTTCCTTGAG
131 TGAAGCACCTTAAGGGACAAAACAAGCTAAACAAGTGCCATGCTAAATGGGTAGAGTTCCTTGAG
102719182 TCATTTCCCTACGTGATCAAATACAAGAAAGGTAAGTAGAACATAGTTGCGGATGCATTGTCACG
196 TCATTTCCCTACGTGATCAAATACAAGAAAGGTAAGTAGAACATAGTTGCGGATGCATTGTCACG
102719247 AAGGTATGCCCTCAATAATCATCTATATGCTAAACTGCT
261 AAGGTATGCCCTCAATAATCATCTATATGCTAAACTGCT
*
102719286 AAACTCAACGAGGCCGGTCTTAATTATCCCACATTTGACAAGGAGATGTATGCCATAATTCAGGC
1 AAACTCAACGAGGCCGCTCTTAATTATCCCACATTTGACAAGGAGATGTATGCCATAATTCAGGC
102719351 GTTGGAGACATAGCAGCACTATCTTTGGCCTAAGGAATTTGTTATACATACGGATCACGAAGCAT
66 GTTGGAGACATAGCAGCACTATCTTTGGCCTAAGGAATTTGTTATACATACGGATCACGAAGCAT
102719416 TGAAGCACCTTAAGGGACAAAACAAGCTAAACAAGTGCCATGCTAAATGGGTAGAGTTCCTTGAG
131 TGAAGCACCTTAAGGGACAAAACAAGCTAAACAAGTGCCATGCTAAATGGGTAGAGTTCCTTGAG
*
102719481 TCATTTCCCTACGTGATCAAATACAAGAAAGGTAAGTAGAACATAGTTGCGGATGCATTGTCATG
196 TCATTTCCCTACGTGATCAAATACAAGAAAGGTAAGTAGAACATAGTTGCGGATGCATTGTCACG
102719546 AAGGTATGCCCTCAATAATCATCTATATGCTAAACTGCT
261 AAGGTATGCCCTCAATAATCATCTATATGCTAAACTGCT
102719585 TGGGTTTGCC
Statistics
Matches: 297, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
299 297 1.00
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (299 bp):
AAACTCAACGAGGCCGCTCTTAATTATCCCACATTTGACAAGGAGATGTATGCCATAATTCAGGC
GTTGGAGACATAGCAGCACTATCTTTGGCCTAAGGAATTTGTTATACATACGGATCACGAAGCAT
TGAAGCACCTTAAGGGACAAAACAAGCTAAACAAGTGCCATGCTAAATGGGTAGAGTTCCTTGAG
TCATTTCCCTACGTGATCAAATACAAGAAAGGTAAGTAGAACATAGTTGCGGATGCATTGTCACG
AAGGTATGCCCTCAATAATCATCTATATGCTAAACTGCT
Found at i:102721154 original size:27 final size:26
Alignment explanation
Indices: 102721123--102721221 Score: 75
Period size: 27 Copynumber: 3.9 Consensus size: 26
102721113 TCTTAAGTTT
102721123 ATTTAATATGTTCTAATTAGTTTAGC
1 ATTTAATATGTTCTAATTAGTTTAGC
* *
102721149 AATTTAATTTG-TCT--TAAGTTT---
1 -ATTTAATATGTTCTAATTAGTTTAGC
* *
102721170 ATTTAATATGTTTTAATTAGTTCAGC
1 ATTTAATATGTTCTAATTAGTTTAGC
* *
102721196 TATTTAATATGTCCTAAGTTAATTTA
1 -ATTTAATATGTTCTAA-TTAGTTTA
102721222 ATATGTTTTA
Statistics
Matches: 54, Mismatches: 10, Indels: 15
0.68 0.13 0.19
Matches are distributed among these distances:
20 9 0.17
21 2 0.04
23 5 0.09
24 6 0.11
26 3 0.06
27 23 0.43
28 6 0.11
ACGTcount: A:0.31, C:0.07, G:0.10, T:0.52
Consensus pattern (26 bp):
ATTTAATATGTTCTAATTAGTTTAGC
Found at i:102721185 original size:20 final size:20
Alignment explanation
Indices: 102721102--102721227 Score: 72
Period size: 20 Copynumber: 5.6 Consensus size: 20
102721092 TTAGTTTAAG
*
102721102 TATTTAATTTGTCTTAAGTT
1 TATTTAATATGTCTTAAGTT
*
102721122 TATTTAATATGTTCTAATTAGTT
1 TATTTAATATG-TCT--TAAGTT
*
102721145 TAGCAATTTAATTTGTCTTAAGTT
1 T----ATTTAATATGTCTTAAGTT
*
102721169 TATTTAATATGTTTTAATTAGTT
1 TATTTAATATGTCTT-A--AGTT
*
102721192 CAGCTATTTAATATGTCCTAAGTT
1 ----TATTTAATATGTCTTAAGTT
*
102721216 AATTTAATATGT
1 TATTTAATATGT
102721228 TTTAGCTAGT
Statistics
Matches: 83, Mismatches: 9, Indels: 28
0.69 0.08 0.23
Matches are distributed among these distances:
20 33 0.40
21 4 0.05
23 10 0.12
24 10 0.12
26 4 0.05
27 22 0.27
ACGTcount: A:0.30, C:0.06, G:0.10, T:0.53
Consensus pattern (20 bp):
TATTTAATATGTCTTAAGTT
Found at i:102721243 original size:47 final size:47
Alignment explanation
Indices: 102721102--102721231 Score: 206
Period size: 47 Copynumber: 2.8 Consensus size: 47
102721092 TTAGTTTAAG
* *
102721102 TATTTAATTTGTCTTAAGTTTATTTAATATGTTCTAATTAGTTTAGC
1 TATTTAATTTGTCTTAAGTTTATTTAATATGTTTTAATTAGTTCAGC
*
102721149 AATTTAATTTGTCTTAAGTTTATTTAATATGTTTTAATTAGTTCAGC
1 TATTTAATTTGTCTTAAGTTTATTTAATATGTTTTAATTAGTTCAGC
* * *
102721196 TATTTAATATGTCCTAAGTTAATTTAATATGTTTTA
1 TATTTAATTTGTCTTAAGTTTATTTAATATGTTTTA
102721232 GCTAGTACAG
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 76 1.00
ACGTcount: A:0.30, C:0.06, G:0.10, T:0.54
Consensus pattern (47 bp):
TATTTAATTTGTCTTAAGTTTATTTAATATGTTTTAATTAGTTCAGC
Found at i:102723180 original size:29 final size:29
Alignment explanation
Indices: 102723121--102723202 Score: 89
Period size: 28 Copynumber: 2.9 Consensus size: 29
102723111 TATAAATGTA
* * *
102723121 ATTTGGGCTTAAT-GGCCATATGAATGTG
1 ATTTGGGCCTAATGGGCCATATGAAAGAG
*
102723149 ATTTGGGCCTACTGGGCCATATGAAAGAG
1 ATTTGGGCCTAATGGGCCATATGAAAGAG
* *
102723178 A-TTGGGCCTAGTGGGTCATAT-AAAG
1 ATTTGGGCCTAATGGGCCATATGAAAG
102723203 GTACGTGGAC
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
27 4 0.09
28 29 0.62
29 14 0.30
ACGTcount: A:0.27, C:0.13, G:0.30, T:0.29
Consensus pattern (29 bp):
ATTTGGGCCTAATGGGCCATATGAAAGAG
Found at i:102724326 original size:17 final size:17
Alignment explanation
Indices: 102724304--102724336 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
102724294 TTTAAGGAAG
102724304 GGTTTTCAATAAAACAA
1 GGTTTTCAATAAAACAA
*
102724321 GGTTTTCACTAAAACA
1 GGTTTTCAATAAAACA
102724337 CTACAATGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.30
Consensus pattern (17 bp):
GGTTTTCAATAAAACAA
Found at i:102728719 original size:7 final size:7
Alignment explanation
Indices: 102728707--102728737 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
102728697 ACCTCATTTG
102728707 ATCCCTC
1 ATCCCTC
102728714 ATCCCTC
1 ATCCCTC
102728721 ATCCCTC
1 ATCCCTC
102728728 ATCCCTC
1 ATCCCTC
102728735 ATC
1 ATC
102728738 ATTATCTCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.16, C:0.55, G:0.00, T:0.29
Consensus pattern (7 bp):
ATCCCTC
Found at i:102729570 original size:19 final size:22
Alignment explanation
Indices: 102729537--102729576 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
102729527 AGTTTATTTA
102729537 TGTTATAATTGTTGC-AAAATG
1 TGTTATAATTGTTGCTAAAATG
102729558 TGTT-TAATT-TTGCTAAAAT
1 TGTTATAATTGTTGCTAAAAT
102729577 CTATTTCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 10 0.56
21 4 0.22
ACGTcount: A:0.33, C:0.05, G:0.15, T:0.47
Consensus pattern (22 bp):
TGTTATAATTGTTGCTAAAATG
Found at i:102731007 original size:26 final size:25
Alignment explanation
Indices: 102730966--102731016 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 25
102730956 TCACAATAAA
102730966 ACATACATTTTCAACAAATTTCATG
1 ACATACATTTTCAACAAATTTCATG
102730991 ACATATCATTTTCAACAAATTTCATG
1 ACATA-CATTTTCAACAAATTTCATG
102731017 CTTGTAATCC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.39, C:0.20, G:0.04, T:0.37
Consensus pattern (25 bp):
ACATACATTTTCAACAAATTTCATG
Found at i:102735869 original size:28 final size:28
Alignment explanation
Indices: 102735837--102735901 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
102735827 ATTTACTAGA
*
102735837 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
102735865 ATACCCCTATGTGTGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
102735893 ATACCCCTA
1 ATACCCCTA
102735902 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.09, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:102736065 original size:27 final size:27
Alignment explanation
Indices: 102736007--102736107 Score: 116
Period size: 28 Copynumber: 3.6 Consensus size: 27
102735997 AGGAAGCGTC
102736007 CTGGTGGCTAC-GCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
*
102736035 CTGGTGGC-CTTGCCACATATATCTGTT
1 CTGGTGGCAC-TGCCACAAATATCTGTT
102736062 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
* *
102736091 CTGGTGACACTGTCACA
1 CTGGTGGCACTGCCACA
102736108 TTTTCTGTAT
Statistics
Matches: 64, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
26 1 0.02
27 22 0.34
28 26 0.41
29 15 0.23
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.31
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:102736115 original size:55 final size:56
Alignment explanation
Indices: 102736007--102736121 Score: 139
Period size: 55 Copynumber: 2.1 Consensus size: 56
102735997 AGGAAGCGTC
* *
102736007 CTGGTGGCTACGCCACAAATTATCTGTTCTGGTGGCCTTGCCACATATATCTGT-T
1 CTGGTGGCTACGCCACAAAATATCTGTTCTGGTGACCTTGCCACATATATCTGTAT
* *
102736062 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACAC-TGTCACAT-TTTCTGTAT
1 CTGGTGGCTAC-GCCACAAAATATCTGT-TCTGGTGAC-CTTGCCACATATATCTGTAT
102736118 CTGG
1 CTGG
102736122 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
54 2 0.04
55 29 0.56
56 20 0.38
57 1 0.02
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (56 bp):
CTGGTGGCTACGCCACAAAATATCTGTTCTGGTGACCTTGCCACATATATCTGTAT
Found at i:102736830 original size:93 final size:93
Alignment explanation
Indices: 102736671--102736857 Score: 356
Period size: 93 Copynumber: 2.0 Consensus size: 93
102736661 AACATTAAGG
* *
102736671 TATTTCAAAATAACACGATTACAAGTAAGACTTCTGCTAAGCAAACGTTTTCAAACTTAATCATG
1 TATTTCAAAATAACACAATTACAAGTAAGACTTCCGCTAAGCAAACGTTTTCAAACTTAATCATG
102736736 TTCTTAAGATAGACATAACCAGACGGTT
66 TTCTTAAGATAGACATAACCAGACGGTT
102736764 TATTTCAAAATAACACAATTACAAGTAAGACTTCCGCTAAGCAAACGTTTTCAAACTTAATCATG
1 TATTTCAAAATAACACAATTACAAGTAAGACTTCCGCTAAGCAAACGTTTTCAAACTTAATCATG
102736829 TTCTTAAGATAGACATAACCAGACGGTT
66 TTCTTAAGATAGACATAACCAGACGGTT
102736857 T
1 T
102736858 TCTCAAATTA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
93 92 1.00
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.30
Consensus pattern (93 bp):
TATTTCAAAATAACACAATTACAAGTAAGACTTCCGCTAAGCAAACGTTTTCAAACTTAATCATG
TTCTTAAGATAGACATAACCAGACGGTT
Found at i:102738225 original size:38 final size:38
Alignment explanation
Indices: 102738183--102738269 Score: 165
Period size: 38 Copynumber: 2.3 Consensus size: 38
102738173 ATAGACATGC
102738183 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
1 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
*
102738221 ATGTTCGGCCCCATGAATGAGTACATAAGTTGATGTGT
1 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
102738259 ATGTTCGGCCA
1 ATGTTCGGCCA
102738270 TAGGTAAGCA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 47 1.00
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (38 bp):
ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
Found at i:102739799 original size:40 final size:41
Alignment explanation
Indices: 102739745--102739947 Score: 215
Period size: 40 Copynumber: 5.1 Consensus size: 41
102739735 GGAATTTAAT
* ** *
102739745 CGGA-TATAGCAACTCATTCAAATGCCTTCGGGACATAGCC
1 CGGATTATAGTAACTCACACAAATGCCTTCGGGACTTAGCC
*
102739785 CGG-TTATAGTAACTCACACAAATGCCTTCGGGACTTAACC
1 CGGATTATAGTAACTCACACAAATGCCTTCGGGACTTAGCC
* *
102739825 CGGATT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCC
1 CGGATTATAGTAACTCACACAAATGCCTTCGGGACTTAGCC
* * * *
102739864 CGAAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTC
1 CGGATTATAGTAACTCACACAAATGCCTTCGGGA-CTTAGCC
* *
102739904 CGGA-TATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCC
1 CGGATTATAGTAACTCA-CACAAATGCCTTCGGGACTTAGCC
102739944 CGGA
1 CGGA
102739948 CATCATTCGA
Statistics
Matches: 139, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 93 0.67
41 11 0.08
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
CGGATTATAGTAACTCACACAAATGCCTTCGGGACTTAGCC
Found at i:102739877 original size:79 final size:80
Alignment explanation
Indices: 102739765--102739945 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
102739755 AACTCATTCA
* **
102739765 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGA-CTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCACACAAATGCCTTC-GGATCTTAACCCGGA
* *
102739829 TTTAGTAAC-TCGCACC
65 TATAGTAACTTAGCA-C
* **
102739845 AATGCCTTCGGG-CTTAGCCCGAA-ATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGAATA-TAGTAACTCACACAAATGCCTTCGGATCTTAACCCGGA
*
102739908 TATAGTCACTTAGCAC
65 TATAGTAACTTAGCAC
*
102739924 AAAGCCTTCGGGACTTAGCCCG
1 AATGCCTTCGGGACTTAGCCCG
102739946 GACATCATTC
Statistics
Matches: 87, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
78 4 0.05
79 58 0.67
80 25 0.29
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:102742230 original size:40 final size:40
Alignment explanation
Indices: 102742136--102742360 Score: 267
Period size: 40 Copynumber: 5.6 Consensus size: 40
102742126 TATTCGAATG
*
102742136 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
102742177 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
102742217 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
102742257 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
102742297 ATATCTGGGCTAAG-TCCCGAAGGCATCTGTGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
*
102742337 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
102742361 CTTGTGCAAG
Statistics
Matches: 159, Mismatches: 20, Indels: 11
0.84 0.11 0.06
Matches are distributed among these distances:
39 1 0.01
40 128 0.81
41 29 0.18
42 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:102742316 original size:80 final size:80
Alignment explanation
Indices: 102742136--102742396 Score: 312
Period size: 80 Copynumber: 3.3 Consensus size: 80
102742126 TATTCGAATG
* * * *
102742136 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
102742201 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * *
102742217 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
102742282 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * *
102742297 ATATCTGGGCTAAGTCCCGAAGGCATCTGTGCTAGTGACCATATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
102742362 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
* *
102742376 ATATCC-GGCTAAATCTCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
102742397 ATTTCTTGAG
Statistics
Matches: 155, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
78 13 0.08
79 13 0.08
80 97 0.63
81 32 0.21
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:102742350 original size:120 final size:121
Alignment explanation
Indices: 102742136--102742360 Score: 323
Period size: 120 Copynumber: 1.9 Consensus size: 121
102742126 TATTCGAATG
* * *
102742136 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
*
102742201 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
66 ATTCGTGCGAGTTGCCATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
* * *
102742257 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACTATATCTGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
*
102742320 CA-TCTGTGCTAG-TGACCATATCCGGGCTAAGACCCGAAGGC
65 CATTC-GTGCGAGTTG-CCATATCCGGGCTAAGACCCGAAGGC
102742361 CTTGTGCAAG
Statistics
Matches: 93, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
119 5 0.05
120 56 0.60
121 32 0.34
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (121 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCGTGCGAGTTGCCATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
Found at i:102745504 original size:11 final size:10
Alignment explanation
Indices: 102745476--102745509 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
102745466 ATGATGTAAG
102745476 TATTCTGAAT
1 TATTCTGAAT
*
102745486 TTTTCTGAAT
1 TATTCTGAAT
102745496 ATATTCTGAAT
1 -TATTCTGAAT
102745507 TAT
1 TAT
102745510 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:102751873 original size:28 final size:28
Alignment explanation
Indices: 102751811--102751873 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
102751801 ATTTACTAGA
* *
102751811 ATACCCATATGTATGCAAAATTACCATT
1 ATACCCTTATGTATGCAAAATGACCATT
* *
102751839 ATACCCTTATGTGTGCAAAATGACCTTT
1 ATACCCTTATGTATGCAAAATGACCATT
102751867 ATACCCT
1 ATACCCT
102751874 AGGGTTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.33, C:0.24, G:0.10, T:0.33
Consensus pattern (28 bp):
ATACCCTTATGTATGCAAAATGACCATT
Found at i:102752021 original size:28 final size:27
Alignment explanation
Indices: 102751980--102752069 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
102751970 AGGAAGCGTC
102751980 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
102752008 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
*
102752035 CTGCTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
102752064 CTGGTG
1 CTGGTG
102752070 ACTCTGTCAC
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 22 0.42
28 25 0.47
29 6 0.11
ACGTcount: A:0.20, C:0.26, G:0.22, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:102752042 original size:27 final size:27
Alignment explanation
Indices: 102751990--102752066 Score: 100
Period size: 27 Copynumber: 2.7 Consensus size: 27
102751980 CTGGTGGCTA
* *
102751990 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAA-TATCTGTTCTGCTGGCAC
*
102752018 TGCCACATATATCTGTTCTGCTGGCAC
1 TGCCACAAATATCTGTTCTGCTGGCAC
102752045 TGCCACAAAATATCTGTATCTG
1 TGCCAC-AAATATCTGT-TCTG
102752067 GTGACTCTGT
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
27 22 0.51
28 17 0.40
29 4 0.09
ACGTcount: A:0.22, C:0.27, G:0.18, T:0.32
Consensus pattern (27 bp):
TGCCACAAATATCTGTTCTGCTGGCAC
Found at i:102753649 original size:10 final size:10
Alignment explanation
Indices: 102753634--102753677 Score: 52
Period size: 10 Copynumber: 4.1 Consensus size: 10
102753624 ACTTAATATC
102753634 CATACCAAAA
1 CATACCAAAA
*
102753644 CATACCAAAC
1 CATACCAAAA
102753654 CATAAGCCAAAA
1 CAT-A-CCAAAA
102753666 TCATACCAAAA
1 -CATACCAAAA
102753677 C
1 C
102753678 TTAGGTTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
10 13 0.45
11 7 0.24
12 6 0.21
13 3 0.10
ACGTcount: A:0.55, C:0.32, G:0.02, T:0.11
Consensus pattern (10 bp):
CATACCAAAA
Found at i:102758089 original size:27 final size:27
Alignment explanation
Indices: 102758015--102758101 Score: 120
Period size: 27 Copynumber: 3.2 Consensus size: 27
102758005 CAAAACAGAC
* * **
102758015 ATTTTACCCTACAAGGGTATGTCGGGC
1 ATTTTACACTACAAGGGTATTTCGGTA
*
102758042 ATTTTACACTACAAGGGTATTTTGGTA
1 ATTTTACACTACAAGGGTATTTCGGTA
*
102758069 ATTTTACACTACAAGGGTATTTCGATA
1 ATTTTACACTACAAGGGTATTTCGGTA
102758096 ATTTTA
1 ATTTTA
102758102 TAAATCGGGG
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCGGTA
Found at i:102758113 original size:27 final size:27
Alignment explanation
Indices: 102758055--102758438 Score: 275
Period size: 27 Copynumber: 14.3 Consensus size: 27
102758045 TTACACTACA
* * * *
102758055 AGGGTATTTTGGTAATTTTAC-ACTACA
1 AGGGTATTTCGATAATTTTACAAAT-CG
*
102758082 AGGGTATTTCGATAATTTTATAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
102758109 GGGGTGTTTCTG-TAATTTTACAATTTG
1 AGGGTATTTC-GATAATTTTACAAATCG
* *
102758136 AGGGTGTTTCGATAATTTTATAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
102758163 AGGGTGTTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
102758190 AGGGTGTTTC-AGTAATTTCACAAATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * * * * *
102758217 AGGGTGTTTTGGTAAGTTTATAGATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* ** * * *
102758244 AGGGTGTTTTAATAATTTCAAAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
*
102758271 AGGGTATTTC-AGTAATTTCAC-AATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * * *
102758297 AGGCTATTTCGGTACTTTTACAAA-CC
1 AGGGTATTTCGATAATTTTACAAATCG
102758323 AGGAGTATTTC-AGTAATTTTACAAATCG
1 AGG-GTATTTCGA-TAATTTTACAAATCG
* **
102758351 AGGGTATTTC-AGTAATTTCA-AAATTA
1 AGGGTATTTCGA-TAATTTTACAAATCG
*
102758377 AGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
102758404 GGGGTATTTTGGTAATTTTAAAAAGT-G
1 AGGGTATTTCGATAATTTTACAAA-TCG
102758431 AGGGTATT
1 AGGGTATT
102758439 GCAGTAATTT
Statistics
Matches: 290, Mismatches: 53, Indels: 28
0.78 0.14 0.08
Matches are distributed among these distances:
26 48 0.17
27 234 0.81
28 8 0.03
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:102758140 original size:81 final size:80
Alignment explanation
Indices: 102758055--102758449 Score: 375
Period size: 81 Copynumber: 4.9 Consensus size: 80
102758045 TTACACTACA
* * * * * * *
102758055 AGGGTATTTTGGTAATTTTACACTACAAGGGTATTTCGATAATTTTATAAATCGGGGGTGTTTCT
1 AGGGTATTTCGGTAATTTTACA-AACGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCA
* * *
102758120 GTAATTTTACAATTTG
65 GTAATTTCACAAATCG
* * * * *
102758136 AGGGTGTTTCGATAATTTTATAAATCGAGGGTGTTTCGATAATTTTACAAATCGAGGGTGTTTCA
1 AGGGTATTTCGGTAATTTTACAAA-CGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCA
102758201 GTAATTTCACAAATCG
65 GTAATTTCACAAATCG
* * * * * * ** * * *
102758217 AGGGTGTTTTGGTAAGTTTATAGATCGAGGGTGTTTTAATAATTTCAAAAATTGAGGGTATTTCA
1 AGGGTATTTCGGTAATTTTACA-AACGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCA
102758282 GTAATTTCAC-AATCG
65 GTAATTTCACAAATCG
* * *
102758297 AGGCTATTTCGGTACTTTTACAAACCAGGAGTATTTC-AGTAATTTTACAAATCGAGGGTATTTC
1 AGGGTATTTCGGTAATTTTACAAACGAGG-GTATTTCGA-TAATTTTACAAATCGAGGGTATTTC
**
102758361 AGTAATTTCA-AAATTA
64 AGTAATTTCACAAATCG
* * * * *
102758377 AGGGTATTTCGGTAATTTTACAAATCGGGGGTATTTTGGTAATTTTAAAAAGT-GAGGGTATTGC
1 AGGGTATTTCGGTAATTTTACAAA-CGAGGGTATTTCGATAATTTTACAAA-TCGAGGGTATTTC
102758441 AGTAATTTC
64 AGTAATTTC
102758450 TCTTTATTAT
Statistics
Matches: 260, Mismatches: 46, Indels: 17
0.80 0.14 0.05
Matches are distributed among these distances:
79 6 0.02
80 120 0.46
81 133 0.51
82 1 0.00
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.39
Consensus pattern (80 bp):
AGGGTATTTCGGTAATTTTACAAACGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAG
TAATTTCACAAATCG
Found at i:102758797 original size:28 final size:28
Alignment explanation
Indices: 102758765--102758828 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 28
102758755 TGACCCCTTT
* * *
102758765 AGGCCCAATCTCGTTCACATGGCCTATC
1 AGGCCCAATCACATTCACATGGCCCATC
*
102758793 AGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
102758821 AGGCCCAA
1 AGGCCCAA
102758829 CTACTTCCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.27, C:0.36, G:0.17, T:0.20
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATGGCCCATC
Found at i:102760573 original size:17 final size:18
Alignment explanation
Indices: 102760551--102760584 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
102760541 CATATTGAAG
102760551 TGTTTT-ATCGAAAACCA
1 TGTTTTCATCGAAAACCA
*
102760568 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
102760585 CTTCGTACTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCA
Found at i:102761735 original size:27 final size:27
Alignment explanation
Indices: 102761649--102761737 Score: 97
Period size: 27 Copynumber: 3.3 Consensus size: 27
102761639 CAAAACAATC
* * * * *
102761649 ATTTTACCCTATAGGGGTATGTCGATC
1 ATTTTACACTACAAGGGTATTTCGATA
* *
102761676 ATTTTACACTACAAGGTTATTTCGGTA
1 ATTTTACACTACAAGGGTATTTCGATA
* *
102761703 AATTTACACTACAAGGGTATTTTGATA
1 ATTTTACACTACAAGGGTATTTCGATA
102761730 ATTTTACA
1 ATTTTACA
102761738 AATCGGGGGT
Statistics
Matches: 50, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.30, C:0.15, G:0.16, T:0.39
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCGATA
Found at i:102761747 original size:27 final size:27
Alignment explanation
Indices: 102761716--102762082 Score: 352
Period size: 27 Copynumber: 13.7 Consensus size: 27
102761706 TTACACTACA
*
102761716 AGGGTATTTTGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
102761743 GGGGTGTCTGGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
102761770 AGGGTATTTTGGTAATTTTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
102761797 AGGCTA-TTCGGTAATTTTAGAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
102761823 AGGGTGTTAT-GGTAATTTTACAAATCG
1 AGGGTATT-TCGATAATTTTACAAATCG
*
102761850 AGGGTGTTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
102761877 AGGGTGTTTC-AGTAATTTCACAAATAG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* *
102761904 AGGGTGTTTCGATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
102761931 AGGGTATTTTGGTAATTTCACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
102761958 AGGGTGTTTCGATAATTTTACAAGTTG
1 AGGGTATTTCGATAATTTTACAAATCG
**
102761985 AGGGTATTTCAGA-AA-TTT-CATAATTA
1 AGGGTATTTC-GATAATTTTACA-AATCG
* * *
102762011 AGGGTATTT-TAGTATTTTTAGAAATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
102762038 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
102762065 AGGGTATTTCAATAATTT
1 AGGGTATTTCGATAATTT
102762083 CTCTTTATTA
Statistics
Matches: 285, Mismatches: 43, Indels: 24
0.81 0.12 0.07
Matches are distributed among these distances:
24 1 0.00
25 2 0.01
26 39 0.14
27 237 0.83
28 6 0.02
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:102761839 original size:80 final size:80
Alignment explanation
Indices: 102761728--102762069 Score: 291
Period size: 80 Copynumber: 4.2 Consensus size: 80
102761718 GGTATTTTGA
* *
102761728 TAATTTTACAAATCGGGGGTGTCTGGATAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAA
1 TAATTTTACAAATCGAGGGTGTTTGG-TAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAA
*
102761793 ATCAAGGCT-ATTCGG
65 ATCAAGGCTGATTCAG
* * * *
102761808 TAATTTTAGAAATCGAGGGTGTTATGGTAATTTTACAAATCGAGGGTGTTTCGATAATTTTACAA
1 TAATTTTACAAATCGAGGGTGTT-TGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAA
* * *
102761873 ATCGAGGGTGTTTCAG
65 ATCAAGGCTGATTCAG
* * * * *
102761889 TAATTTCACAAATAGAGGGTGTTTCGATAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAA
1 TAATTTTACAAATCGAGGGTGTTT-GGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAA
** * *
102761954 ATTGAGGGTGTTTC-G
65 ATCAAGGCTGATTCAG
* * * * * ** * * *
102761969 ATAATTTTACAAGTTGAGGGTATTTCAG-AAATTT-CATAATTAAGGGTATTTTAGTATTTTTAG
1 -TAATTTTACAAATCGAGGGTGTTT-GGTAATTTTACA-AATCGAGGGTATTTTGGTAATTTTAC
* *
102762032 AAATCGAGGGT-ATTTC-G
63 AAATCAAGGCTGA-TTCAG
102762049 ATAATTTTACAAATCGAGGGT
1 -TAATTTTACAAATCGAGGGT
102762070 ATTTCAATAA
Statistics
Matches: 220, Mismatches: 36, Indels: 12
0.82 0.13 0.04
Matches are distributed among these distances:
79 2 0.01
80 123 0.56
81 95 0.43
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (80 bp):
TAATTTTACAAATCGAGGGTGTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAA
TCAAGGCTGATTCAG
Found at i:102765357 original size:30 final size:30
Alignment explanation
Indices: 102765323--102765383 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
102765313 TCCTTAACTC
102765323 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
102765353 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
102765383 A
1 A
102765384 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:102773054 original size:27 final size:26
Alignment explanation
Indices: 102773024--102773395 Score: 260
Period size: 27 Copynumber: 13.8 Consensus size: 26
102773014 CATGTAGGTC
*
102773024 ATTTTACACTATAAGGGTATTTCGGTA
1 ATTTTACA-AATAAGGGTATTTCGGTA
* * *
102773051 ATTTTACACTATAATGGTATTTTGGTA
1 ATTTTACA-AATAAGGGTATTTCGGTA
** * **
102773078 ATTTTACAAATCGGGGTTGTTTCAATA
1 ATTTTACAAATAAGGG-TATTTCGGTA
*
102773105 ATTTTACAAATCGAGGGTATTTCGGTA
1 ATTTTACAAAT-AAGGGTATTTCGGTA
* *
102773132 ATTTTACAAATAAGGGTGTTTCAGTA
1 ATTTTACAAATAAGGGTATTTCGGTA
* * *
102773158 ATTTTACAAATCGAGCGTGTTTCGGTA
1 ATTTTACAAAT-AAGGGTATTTCGGTA
* * * *
102773185 ATTATACAAATCGAGTGTATTTTGGTA
1 ATTTTACAAAT-AAGGGTATTTCGGTA
* * *
102773212 ATTTTGA-AAATCGAGGGTGTTTCGATA
1 ATTTT-ACAAAT-AAGGGTATTTCGGTA
* * *
102773239 ATTTTAAAAATCAAGGGTGTTTTGGTA
1 ATTTTACAAAT-AAGGGTATTTCGGTA
* *
102773266 ATTTTATAAATCAAGGGTATTTCGATA
1 ATTTTACAAAT-AAGGGTATTTCGGTA
* * **
102773293 ATTTCACAAATCGAGGGTATTTTAGTA
1 ATTTTACAAAT-AAGGGTATTTCGGTA
* * * *
102773320 ATTTCACAATTGAGGGTATTTCTGTA
1 ATTTTACAAATAAGGGTATTTCGGTA
* * * *
102773346 ATTTTAGAAATCGAGGGTATTTTGATA
1 ATTTTACAAAT-AAGGGTATTTCGGTA
*
102773373 ATTTTACAAATCGAGGGTATTTC
1 ATTTTACAAAT-AAGGGTATTTC
102773396 AATGATTCCA
Statistics
Matches: 285, Mismatches: 54, Indels: 12
0.81 0.15 0.03
Matches are distributed among these distances:
26 49 0.17
27 232 0.81
28 4 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (26 bp):
ATTTTACAAATAAGGGTATTTCGGTA
Found at i:102773193 original size:80 final size:81
Alignment explanation
Indices: 102773037--102773483 Score: 413
Period size: 80 Copynumber: 5.6 Consensus size: 81
102773027 TTACACTATA
* * * * **
102773037 AGGGTATTTCGGTAATTTTACACTAT-AATGGTATTTTGGTAATTTTACAAATCG-GGGTTGTTT
1 AGGGTATTTCGATAATTTTACA-AATCGAGGGTATTTCAGTAATTTTACAAATCGAGGG-TGTTT
**
102773100 CAATAATTTTACAAATCG
64 CGGTAATTTTACAAATCG
* * * *
102773118 AGGGTATTTCGGTAATTTTACAAAT-AAGGGTGTTTCAGTAATTTTACAAATCGAGCGTGTTTCG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTGTTTCG
*
102773182 GTAATTATACAAATCG
66 GTAATTTTACAAATCG
* * * * * *
102773198 AGTGTATTTTGGTAATTTTGA-AAATCGAGGGTGTTTC-GATAATTTTAAAAATCAAGGGTGTTT
1 AGGGTATTTCGATAATTTT-ACAAATCGAGGGTATTTCAG-TAATTTTACAAATCGAGGGTGTTT
* * *
102773261 TGGTAATTTTATAAATCA
64 CGGTAATTTTACAAATCG
* * * * * *
102773279 AGGGTATTTCGATAATTTCACAAATCGAGGGTATTTTAGTAATTTCAC-AATTGAGGGTATTTCT
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTGTTTCG
*
102773343 GTAATTTTAGAAATCG
66 GTAATTTTACAAATCG
* * * ** *
102773359 AGGGTATTTTGATAATTTTACAAATCGAGGGTATTTCAATGATTCCAC-AATCGAGGGTATTTCG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTGTTTCG
* * * *
102773423 ATAATGTTAGAAATTG
66 GTAATTTTACAAATCG
* * ** *
102773439 GGGGTATTTCGATAATTTTATAAATCGAGGACATTTCAATAATTT
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTT
102773484 CTCTTTGTTA
Statistics
Matches: 308, Mismatches: 52, Indels: 13
0.83 0.14 0.03
Matches are distributed among these distances:
80 201 0.65
81 106 0.34
82 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (81 bp):
AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTGTTTCG
GTAATTTTACAAATCG
Found at i:102773408 original size:27 final size:27
Alignment explanation
Indices: 102773076--102773484 Score: 256
Period size: 27 Copynumber: 15.3 Consensus size: 27
102773066 GGTATTTTGG
* *
102773076 TAATTTTACAAATCG-GGGTTGTTTCAA
1 TAATTTCACAAATCGAGGG-TATTTCAA
* **
102773103 TAATTTTACAAATCGAGGGTATTTCGG
1 TAATTTCACAAATCGAGGGTATTTCAA
* * * *
102773130 TAATTTTACAAAT-AAGGGTGTTTCAG
1 TAATTTCACAAATCGAGGGTATTTCAA
* * * **
102773156 TAATTTTACAAATCGAGCGTGTTTCGG
1 TAATTTCACAAATCGAGGGTATTTCAA
* ***
102773183 TAATTAT-ACAAATCGAGTGTATTTTGG
1 TAATT-TCACAAATCGAGGGTATTTCAA
* * *
102773210 TAATTTTGA-AAATCGAGGGTGTTTCGA
1 TAA-TTTCACAAATCGAGGGTATTTCAA
* * * * ***
102773237 TAATTTTAAAAATCAAGGGTGTTTTGG
1 TAATTTCACAAATCGAGGGTATTTCAA
* * * *
102773264 TAATTTTATAAATCAAGGGTATTTCGA
1 TAATTTCACAAATCGAGGGTATTTCAA
* *
102773291 TAATTTCACAAATCGAGGGTATTTTAG
1 TAATTTCACAAATCGAGGGTATTTCAA
* **
102773318 TAATTTCAC-AATTGAGGGTATTTCTG
1 TAATTTCACAAATCGAGGGTATTTCAA
* * **
102773344 TAATTTTAGAAATCGAGGGTATTTTGA
1 TAATTTCACAAATCGAGGGTATTTCAA
*
102773371 TAATTTTACAAATCGAGGGTATTTCAA
1 TAATTTCACAAATCGAGGGTATTTCAA
* * *
102773398 TGATTCCAC-AATCGAGGGTATTTCGA
1 TAATTTCACAAATCGAGGGTATTTCAA
* * * *
102773424 TAATGTT-AGAAATTGGGGGTATTTCGA
1 TAAT-TTCACAAATCGAGGGTATTTCAA
* * **
102773451 TAATTTTATAAATCGAGGACATTTCAA
1 TAATTTCACAAATCGAGGGTATTTCAA
102773478 TAATTTC
1 TAATTTC
102773485 TCTTTGTTAT
Statistics
Matches: 314, Mismatches: 58, Indels: 20
0.80 0.15 0.05
Matches are distributed among these distances:
26 70 0.22
27 237 0.75
28 7 0.02
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
TAATTTCACAAATCGAGGGTATTTCAA
Found at i:102773411 original size:53 final size:54
Alignment explanation
Indices: 102773066--102773468 Score: 383
Period size: 54 Copynumber: 7.5 Consensus size: 54
102773056 ACACTATAAT
* * *
102773066 GGTATTTTGGTAATTTTACAAATCG-GGGT-TGTTTCAATAATTTTACAAATCGAG
1 GGTATTTCGATAATTTTACAAATCGAGGGTAT-TTT-GATAATTTTACAAATCGAG
* * * *
102773120 GGTATTTCGGTAATTTTACAAAT-AAGGGT-GTTTCAGTAATTTTACAAATCGAG
1 GGTATTTCGATAATTTTACAAATCGAGGGTATTTTGA-TAATTTTACAAATCGAG
* * * * * *
102773173 CGTGTTTCGGTAATTATACAAATCGAGTGTATTTTGGTAATTTTGA-AAATCGAG
1 GGTATTTCGATAATTTTACAAATCGAGGGTATTTTGATAATTTT-ACAAATCGAG
* * * * * * *
102773227 GGTGTTTCGATAATTTTAAAAATCAAGGGTGTTTTGGTAATTTTATAAATCAAG
1 GGTATTTCGATAATTTTACAAATCGAGGGTATTTTGATAATTTTACAAATCGAG
* * *
102773281 GGTATTTCGATAATTTCACAAATCGAGGGTATTTT-AGTAATTTCAC-AATTGAG
1 GGTATTTCGATAATTTTACAAATCGAGGGTATTTTGA-TAATTTTACAAATCGAG
*
102773334 GGTATTTCTG-TAATTTTAGAAATCGAGGGTATTTTGATAATTTTACAAATCGAG
1 GGTATTTC-GATAATTTTACAAATCGAGGGTATTTTGATAATTTTACAAATCGAG
* * ** * * * * *
102773388 GGTATTTCAATGATTCCAC-AATCGAGGGTATTTCGATAATGTTAGAAATTGGG
1 GGTATTTCGATAATTTTACAAATCGAGGGTATTTTGATAATTTTACAAATCGAG
*
102773441 GGTATTTCGATAATTTTATAAATCGAGG
1 GGTATTTCGATAATTTTACAAATCGAGG
102773469 ACATTTCAAT
Statistics
Matches: 288, Mismatches: 49, Indels: 24
0.80 0.14 0.07
Matches are distributed among these distances:
52 1 0.00
53 128 0.44
54 155 0.54
55 4 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (54 bp):
GGTATTTCGATAATTTTACAAATCGAGGGTATTTTGATAATTTTACAAATCGAG
Found at i:102773883 original size:27 final size:28
Alignment explanation
Indices: 102773811--102773915 Score: 151
Period size: 28 Copynumber: 3.8 Consensus size: 28
102773801 GGCCCAGTCT
* *
102773811 CATTCACATGGCCCATCAAGCCTAATCA
1 CATTCATATGGCCCATCAGGCCTAATCA
102773839 CATTCATATGGCCCATCAGGTCC-AATCA
1 CATTCATATGGCCCATCAGG-CCTAATCA
*
102773867 CATT-TTATGGCCCATCAGGCCTAATCA
1 CATTCATATGGCCCATCAGGCCTAATCA
*
102773894 CATTCATATGGCCCATTAGGCC
1 CATTCATATGGCCCATCAGGCC
102773916 CAACTACTTC
Statistics
Matches: 69, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
26 2 0.03
27 23 0.33
28 42 0.61
29 2 0.03
ACGTcount: A:0.28, C:0.32, G:0.14, T:0.26
Consensus pattern (28 bp):
CATTCATATGGCCCATCAGGCCTAATCA
Found at i:102777344 original size:43 final size:44
Alignment explanation
Indices: 102777244--102777345 Score: 122
Period size: 43 Copynumber: 2.4 Consensus size: 44
102777234 CCCAGGCCTA
* *
102777244 GTCTTATATGT-AATCAAATATCGATGCCACTGTCCCAAATACG
1 GTCTTACATGTAAATCAAATATCGATGCCACTGTCCCAAACACG
* * *
102777287 GTCTTACATG-AAATCAAATAT-GATGCCGA-TGTCCTAGACAGG
1 GTCTTACATGTAAATCAAATATCGATGCC-ACTGTCCCAAACACG
102777329 GTCTTACATGTAAATCA
1 GTCTTACATGTAAATCA
102777346 TAAGTCGATG
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
42 25 0.49
43 26 0.51
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (44 bp):
GTCTTACATGTAAATCAAATATCGATGCCACTGTCCCAAACACG
Found at i:102777364 original size:44 final size:42
Alignment explanation
Indices: 102777244--102777368 Score: 117
Period size: 42 Copynumber: 2.9 Consensus size: 42
102777234 CCCAGGCCTA
* * * * * * *
102777244 GTCTTATATGTAATCAAATATCGATGCCACTGTCCCAAATACG
1 GTCTTACATGAAATCAAATA-CGATGCCAATGTCCTAGACAGG
* *
102777287 GTCTTACATGAAATCAAATATGATGCCGATGTCCTAGACAGG
1 GTCTTACATGAAATCAAATACGATGCCAATGTCCTAGACAGG
*
102777329 GTCTTACATGTAAATCATAAGT-CGATGCTAATGTCCTAGA
1 GTCTTACATG-AAATCA-AA-TACGATGCCAATGTCCTAGA
102777369 TGTGGTGTTA
Statistics
Matches: 67, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
42 25 0.37
43 24 0.36
44 17 0.25
45 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.30
Consensus pattern (42 bp):
GTCTTACATGAAATCAAATACGATGCCAATGTCCTAGACAGG
Found at i:102786734 original size:29 final size:30
Alignment explanation
Indices: 102786670--102786812 Score: 117
Period size: 29 Copynumber: 5.1 Consensus size: 30
102786660 ATACATGCAC
* *
102786670 ATGGCCCA-CTAGGCCC-AGT-ATCATTTAT
1 ATGGCCCATCTAGGCCCAATTCA-CATTCAT
* *
102786698 ATGGCCCATCT-GGCCCAATTTACGTTCAT
1 ATGGCCCATCTAGGCCCAATTCACATTCAT
* *
102786727 ATGACCCAT-TAGGCCAAATTCACATTCAT
1 ATGGCCCATCTAGGCCCAATTCACATTCAT
* *
102786756 ATGGCCCA-CTAGGCCC-A-TCTCATTCAC
1 ATGGCCCATCTAGGCCCAATTCACATTCAT
* *
102786783 ATAGCCCATCT-GGCCCAAATCACATT-AT
1 ATGGCCCATCTAGGCCCAATTCACATTCAT
102786811 AT
1 AT
102786813 TGATGCTCAC
Statistics
Matches: 93, Mismatches: 14, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
27 20 0.22
28 21 0.23
29 51 0.55
30 1 0.01
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.27
Consensus pattern (30 bp):
ATGGCCCATCTAGGCCCAATTCACATTCAT
Found at i:102794199 original size:56 final size:56
Alignment explanation
Indices: 102794113--102794232 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
102794103 ACAAGGGATG
102794113 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
* *
102794169 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAGGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
102794225 ATGGGCAA
1 ATGGGCAA
102794233 TAAACTAATA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.44, C:0.09, G:0.24, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:102795444 original size:40 final size:39
Alignment explanation
Indices: 102795363--102795544 Score: 172
Period size: 40 Copynumber: 4.6 Consensus size: 39
102795353 AATGATGTCT
* * * *
102795363 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAATCC
* * *
102795403 GGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTCC
1 GGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAATCC
* * *
102795443 GGGCTAAGCCCAAAGGCA-TTGATACGAGTTACTAAATCC
1 GGGCTAAGTCCGAAGGCATTTG-TGCGAGTTACTAAATCC
*
102795482 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
1 GGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AATCC
*
102795522 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGT-CCGAAGGCATTTG
102795545 AACGAGTAGC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 3 0.03
39 29 0.25
40 72 0.62
41 13 0.11
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
GGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATCC
Found at i:102795500 original size:79 final size:79
Alignment explanation
Indices: 102795413--102795567 Score: 201
Period size: 79 Copynumber: 2.0 Consensus size: 79
102795403 GGACTAAGAT
*
102795413 CCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCAAAGGCA-TTGATACGAGTTA-
1 CCGAAGGCATTTGTGCGAGATACTATA-ACCGGGCTAAGTCCCAAAGGCATTTGA-ACGAG-TAG
102795474 CTAAATCCGGGTTAAGTC
63 CTAAATCC-GGTTAAGTC
* * *
102795492 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTA
1 CCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCAAAGGCATTTGAACGAGTAGCTA
*
102795557 TATCCGGTTAA
66 AATCCGGTTAA
102795568 ATTCCAAAGG
Statistics
Matches: 67, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
79 41 0.61
80 22 0.33
81 4 0.06
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCAAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAGTC
Found at i:102799289 original size:46 final size:46
Alignment explanation
Indices: 102799236--102799410 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
102799226 GTTTGGGCAT
* *
102799236 CCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* * * *
102799282 CCAAACTCGTTGAGTTGAGTCCGAGTT--C-GA-GAGATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA--ACGC
* *
102799327 ATCCGAGCTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCAAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* *
102799375 CTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
102799411 GCAGGTTACA
Statistics
Matches: 107, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 1 0.01
43 7 0.07
44 1 0.01
45 3 0.03
46 59 0.55
47 24 0.22
48 3 0.03
49 1 0.01
50 7 0.07
51 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
Found at i:102799390 original size:93 final size:93
Alignment explanation
Indices: 102799231--102799402 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
102799221 AGGATGTTTG
* *
102799231 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGCCCAAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCAAACTCGTTGAG
102799296 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * ** *
102799324 GGCATCCGAGCTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCAAACGCCTGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCAAACTCGTTGAG
102799389 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
102799403 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCAAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:102802951 original size:47 final size:47
Alignment explanation
Indices: 102802882--102803140 Score: 233
Period size: 47 Copynumber: 5.6 Consensus size: 47
102802872 CAAACATCTA
* *
102802882 AACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCA
1 AACTCATTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCG
* * * * * * * * *
102802929 AATTCATTGAGTTGAGTTCGAGTTCACT--TATGGATGCGA-ACGTCCG
1 AACTCATTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAGGCATCCG
*
102802975 AACTCATTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCA
1 AACTCATTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCG
* * * * * * * * *
102803022 AATTCATTGAGTTGAGTTCGAGTTCACT--TATGGATGCGA-ACGTCCG
1 AACTCATTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAGGCATCCG
102803068 AACTCATTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCG
1 AACTCATTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCG
* *
102803115 AACTCGTTGAGTTGAGTCCGAATTCG
1 AACTCATTGAGTTGAGTCCGAGTTCG
102803141 CTTATGGATG
Statistics
Matches: 160, Mismatches: 42, Indels: 20
0.72 0.19 0.09
Matches are distributed among these distances:
45 2 0.01
46 66 0.41
47 90 0.56
48 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (47 bp):
AACTCATTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCG
Found at i:102802987 original size:93 final size:93
Alignment explanation
Indices: 102802842--102803186 Score: 546
Period size: 93 Copynumber: 3.7 Consensus size: 93
102802832 TGCGAGCTCG
* * * ** *
102802842 TTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACATCTAAACTCGTTGAGTTGAGTCCGAGTTC
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGTTGAGTCCGAGTTC
102802907 GTGAAATGTAACTAGGCATCCAAATTCA
66 GTGAAATGTAACTAGGCATCCAAATTCA
*
102802935 TTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGTTGAGTCCGAGTTC
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGTTGAGTCCGAGTTC
102803000 GTGAAATGTAACTAGGCATCCAAATTCA
66 GTGAAATGTAACTAGGCATCCAAATTCA
*
102803028 TTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGTTGAGTCCGAGTTC
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGTTGAGTCCGAGTTC
* * *
102803093 GTGAAATGTAACTAGGCATCCGAACTCG
66 GTGAAATGTAACTAGGCATCCAAATTCA
* * * * *
102803121 TTGAGTTGAGTCCGAATTCGCTTATGGATGCGAACGACCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGTTGAGTCCGAGTTC
102803186 G
66 G
102803187 CTTATGGGTG
Statistics
Matches: 236, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 236 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (93 bp):
TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGTTGAGTCCGAGTTC
GTGAAATGTAACTAGGCATCCAAATTCA
Found at i:102802997 original size:46 final size:45
Alignment explanation
Indices: 102802842--102803193 Score: 226
Period size: 46 Copynumber: 7.6 Consensus size: 45
102802832 TGCGAGCTCG
* * ** *
102802842 TTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACATCTAAACTCG
1 TTGAGTTGAGTCCGAGTTC-CTTATGGATGCGAACATCCGAACTCA
* * * * * * * *
102802888 TTGAGTTGAGTCCGAGTTCGTGAAATGTA-ACTAGGCATCCAAATTCA
1 TTGAGTTGAGTCCGAGTTCCT--TATGGATGCGA-ACATCCGAACTCA
* *
102802935 TTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGTCCGAACTCA
1 TTGAGTTGAGTCCGAGTTC-CTTATGGATGCGAACATCCGAACTCA
* * * * * * * *
102802981 TTGAGTTGAGTCCGAGTTCGTGAAATGTA-ACTAGGCATCCAAATTCA
1 TTGAGTTGAGTCCGAGTTCCT--TATGGATGCGA-ACATCCGAACTCA
* *
102803028 TTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGTCCGAACTCA
1 TTGAGTTGAGTCCGAGTTC-CTTATGGATGCGAACATCCGAACTCA
* * * * * * *
102803074 TTGAGTTGAGTCCGAGTTCGTGAAATGTA-ACTAGGCATCCGAACTCG
1 TTGAGTTGAGTCCGAGTTCCT--TATGGATGCGA-ACATCCGAACTCA
* * *
102803121 TTGAGTTGAGTCCGAATTCGCTTATGGATGCGAACGA-CCGAGCTCG
1 TTGAGTTGAGTCCGAGTTC-CTTATGGATGCGAAC-ATCCGAACTCA
102803167 TTGAGTTGAGTCCGAGTTCGCTTATGG
1 TTGAGTTGAGTCCGAGTTC-CTTATGG
102803194 GTGGGTTACA
Statistics
Matches: 232, Mismatches: 58, Indels: 32
0.72 0.18 0.10
Matches are distributed among these distances:
45 3 0.01
46 125 0.54
47 101 0.44
48 3 0.01
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (45 bp):
TTGAGTTGAGTCCGAGTTCCTTATGGATGCGAACATCCGAACTCA
Found at i:102809393 original size:16 final size:16
Alignment explanation
Indices: 102809372--102809405 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
102809362 AGTCGTCAAC
102809372 ACATCGTAAATGGCAT
1 ACATCGTAAATGGCAT
102809388 ACATCGTAAATGGCAT
1 ACATCGTAAATGGCAT
102809404 AC
1 AC
102809406 CCCAACAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.24
Consensus pattern (16 bp):
ACATCGTAAATGGCAT
Found at i:102814093 original size:27 final size:27
Alignment explanation
Indices: 102814055--102814275 Score: 239
Period size: 27 Copynumber: 8.2 Consensus size: 27
102814045 AGAGATCATT
* *
102814055 AAATGATCGTAATGCCCCTGTAGAGCA
1 AAATGACCGTAATGCCCCTGTAGAGTA
*
102814082 AAATAGA-CGTAATGCCCCTTTAGAGTA
1 AAAT-GACCGTAATGCCCCTGTAGAGTA
* ** *
102814109 AAATCACTATAATGCCCCTGTAGGGTA
1 AAATGACCGTAATGCCCCTGTAGAGTA
*
102814136 AAATGACCGTAATGCCCATGTAGAGTA
1 AAATGACCGTAATGCCCCTGTAGAGTA
** * *
102814163 AAATGATTGTAATGCCCCTGTAGGGTG
1 AAATGACCGTAATGCCCCTGTAGAGTA
*
102814190 AAATGACCGTAATGCCCCTGGCAG-GTA
1 AAATGACCGTAATGCCCCT-GTAGAGTA
* * *
102814217 AAATGACCGTAATACCCTTGTAGGGTA
1 AAATGACCGTAATGCCCCTGTAGAGTA
* * *
102814244 AAATAACCGTAATGTCCCTGTAGGGTA
1 AAATGACCGTAATGCCCCTGTAGAGTA
102814271 AAATG
1 AAATG
102814276 GCGTGATACC
Statistics
Matches: 161, Mismatches: 29, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
26 4 0.02
27 152 0.94
28 5 0.03
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.24
Consensus pattern (27 bp):
AAATGACCGTAATGCCCCTGTAGAGTA
Found at i:102823603 original size:40 final size:40
Alignment explanation
Indices: 102823544--102823681 Score: 147
Period size: 40 Copynumber: 3.5 Consensus size: 40
102823534 TGGATGATAA
* *
102823544 CCGGGCTAAGTCCCAAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTA-TAT
* *
102823584 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTATAT
* * * *
102823624 CCGGGCTATGTCCCGAAGGTATTCGAGCGAGT-AGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGA-CTATAT
* *
102823664 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
102823682 TACTTGGCTT
Statistics
Matches: 85, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 15 0.18
40 70 0.82
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTATAT
Found at i:102825274 original size:27 final size:27
Alignment explanation
Indices: 102825188--102825259 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 27
102825178 GGAAGTTTTG
* * *
102825188 TACTGGTGACTATGTCACA-TTCACTGC
1 TACTGGTGGCTATGCCACAGTT-ACTGA
*
102825215 TACTGGTGGCTATGCCACAGTTATTGA
1 TACTGGTGGCTATGCCACAGTTACTGA
*
102825242 TACTGGTGGCTTTGCCAC
1 TACTGGTGGCTATGCCAC
102825260 TTTTACTGTT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
27 37 0.95
28 2 0.05
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.33
Consensus pattern (27 bp):
TACTGGTGGCTATGCCACAGTTACTGA
Found at i:102825519 original size:33 final size:33
Alignment explanation
Indices: 102825469--102825589 Score: 172
Period size: 33 Copynumber: 3.7 Consensus size: 33
102825459 CTGCTACTAT
102825469 ATAGGGC-TAGGGCCCAAACTGTACTGATACTGA
1 ATAGGGCTTA-GGCCCAAACTGTACTGATACTGA
*
102825502 ATAGGGCTTAGGTCCAAACTGTACTGATACTGA
1 ATAGGGCTTAGGCCCAAACTGTACTGATACTGA
** * *
102825535 ATAGGGCTTAGGCCCTGATTGTACTAATACTGA
1 ATAGGGCTTAGGCCCAAACTGTACTGATACTGA
*
102825568 ATAGGGCTTAGGCCCAGACTGT
1 ATAGGGCTTAGGCCCAAACTGT
102825590 GTTATTCACT
Statistics
Matches: 79, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
33 77 0.97
34 2 0.03
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (33 bp):
ATAGGGCTTAGGCCCAAACTGTACTGATACTGA
Found at i:102829073 original size:27 final size:27
Alignment explanation
Indices: 102829037--102829203 Score: 210
Period size: 27 Copynumber: 6.2 Consensus size: 27
102829027 AGAGGTCGCT
* ** *
102829037 AAATGACCGTCATGCCTTTGTAGAGTA
1 AAATGACCGTAATGCCCCTGTAGGGTA
*
102829064 AAATGACCGTAATGCCCCTGTAGAGTA
1 AAATGACCGTAATGCCCCTGTAGGGTA
*
102829091 AAATGACTGTAATGCCCCTGTAGGGTA
1 AAATGACCGTAATGCCCCTGTAGGGTA
*
102829118 AAATGACTGTAATGCCCCTGTAGGGTA
1 AAATGACCGTAATGCCCCTGTAGGGTA
* *
102829145 AAATGACCGTAATGCCCTTGTAGGGAA
1 AAATGACCGTAATGCCCCTGTAGGGTA
* * *
102829172 AAATGACCATGATACCCCTGT-GTGGTA
1 AAATGACCGTAATGCCCCTGTAG-GGTA
102829199 AAATG
1 AAATG
102829204 TCAATTATGC
Statistics
Matches: 126, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
26 1 0.01
27 125 0.99
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (27 bp):
AAATGACCGTAATGCCCCTGTAGGGTA
Found at i:102829685 original size:33 final size:33
Alignment explanation
Indices: 102829639--102829712 Score: 112
Period size: 33 Copynumber: 2.2 Consensus size: 33
102829629 AAGGCTAGGG
*
102829639 CCCAGACTGTACTGATACTGAATAGGGCTTAGC
1 CCCAGACTATACTGATACTGAATAGGGCTTAGC
* *
102829672 CCCAGACTATACTGATATTGAATAGGGCTTAGG
1 CCCAGACTATACTGATACTGAATAGGGCTTAGC
*
102829705 CCTAGACT
1 CCCAGACT
102829713 GTGTTATTCA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (33 bp):
CCCAGACTATACTGATACTGAATAGGGCTTAGC
Found at i:102831084 original size:56 final size:56
Alignment explanation
Indices: 102831021--102831154 Score: 241
Period size: 56 Copynumber: 2.4 Consensus size: 56
102831011 AATGGCATCA
*
102831021 ATATATGTGTGCGAGTAAGACCACGTTTAATACATTATCATCGATATGTGATTCTG
1 ATATATGTGTGCGAGTAAGACCACGTTTAATACATTAGCATCGATATGTGATTCTG
102831077 ATATATGTGTGCGAGTAAGACCACGTTTAATACATTAGCATCGATATGTGATTCTG
1 ATATATGTGTGCGAGTAAGACCACGTTTAATACATTAGCATCGATATGTGATTCTG
* *
102831133 ATTTATGTGTGCAAGTAAGACC
1 ATATATGTGTGCGAGTAAGACC
102831155 CTGTCTGGGA
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 75 1.00
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.34
Consensus pattern (56 bp):
ATATATGTGTGCGAGTAAGACCACGTTTAATACATTAGCATCGATATGTGATTCTG
Found at i:102831174 original size:56 final size:56
Alignment explanation
Indices: 102831021--102831185 Score: 188
Period size: 56 Copynumber: 2.9 Consensus size: 56
102831011 AATGGCATCA
* * * * *
102831021 ATATATGTGTGCGAGTAAGACCACGTTTAATACATTATCATCGATATGTGATTCTG
1 ATATATGTGTGCAAGTAAGACCACGTCTAAGACAGTAGCATCGATATGTGATTCTG
* * * *
102831077 ATATATGTGTGCGAGTAAGACCACGTTTAATACATTAGCATCGATATGTGATTCTG
1 ATATATGTGTGCAAGTAAGACCACGTCTAAGACAGTAGCATCGATATGTGATTCTG
* ** * *
102831133 ATTTATGTGTGCAAGTAAGACC-CTGTCTGGGATAGTGGCATCGATATGTGATT
1 ATATATGTGTGCAAGTAAGACCAC-GTCTAAGACAGTAGCATCGATATGTGATT
102831186 ACATGTAAGA
Statistics
Matches: 98, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
55 1 0.01
56 97 0.99
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (56 bp):
ATATATGTGTGCAAGTAAGACCACGTCTAAGACAGTAGCATCGATATGTGATTCTG
Found at i:102835139 original size:40 final size:40
Alignment explanation
Indices: 102835076--102835253 Score: 211
Period size: 40 Copynumber: 4.5 Consensus size: 40
102835066 AAGCCAAAAA
* * * *
102835076 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCTCAAATG
*
102835115 CCTTCGGGACATAGCCCGGATATAGTAACTCG-TACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCT-CAAATG
* *
102835155 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
* * *
102835195 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCTCAAATG
102835235 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
102835254 TTATCATCCA
Statistics
Matches: 122, Mismatches: 12, Indels: 9
0.85 0.08 0.06
Matches are distributed among these distances:
39 14 0.11
40 108 0.89
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
Found at i:102841968 original size:24 final size:24
Alignment explanation
Indices: 102841941--102842017 Score: 104
Period size: 24 Copynumber: 3.2 Consensus size: 24
102841931 GGGAAATCAA
102841941 GAGAAGATTT-GGAAGCTGATAAGG
1 GAGAAGATTTAGG-AGCTGATAAGG
*
102841965 GAGAGGATTTAGGAGCTGATAAGG
1 GAGAAGATTTAGGAGCTGATAAGG
*
102841989 GAG-AGAATTTAGGAGCTGATTAGG
1 GAGAAG-ATTTAGGAGCTGATAAGG
102842013 GAGAA
1 GAGAA
102842018 CGGTGTTGGC
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
23 1 0.02
24 43 0.91
25 3 0.06
ACGTcount: A:0.36, C:0.04, G:0.39, T:0.21
Consensus pattern (24 bp):
GAGAAGATTTAGGAGCTGATAAGG
Found at i:102846738 original size:27 final size:27
Alignment explanation
Indices: 102846708--102846795 Score: 63
Period size: 27 Copynumber: 3.1 Consensus size: 27
102846698 ACAAACTGAC
102846708 GATTAAGAATAAGTATCCACTGCCAAG
1 GATTAAGAATAAGTATCCACTGCCAAG
* ** * * *
102846735 GATTGACG-ATCTGT-TCGACCAGCTTAGAG
1 GATT-AAGAATAAGTATCCA-CTGC-CA-AG
102846764 GANTTAAGAATAAGTATCCACTGCCAAG
1 GA-TTAAGAATAAGTATCCACTGCCAAG
102846792 GATT
1 GATT
102846796 GACGATCTGT
Statistics
Matches: 42, Mismatches: 12, Indels: 14
0.62 0.18 0.21
Matches are distributed among these distances:
26 3 0.07
27 13 0.31
28 7 0.17
29 7 0.17
30 9 0.21
31 3 0.07
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.25
Consensus pattern (27 bp):
GATTAAGAATAAGTATCCACTGCCAAG
Found at i:102846798 original size:57 final size:56
Alignment explanation
Indices: 102846708--102846822 Score: 212
Period size: 57 Copynumber: 2.0 Consensus size: 56
102846698 ACAAACTGAC
102846708 GATTAAGAATAAGTATCCACTGCCAAGGATTGACGATCTGTTCGACCAGCTTAGAG
1 GATTAAGAATAAGTATCCACTGCCAAGGATTGACGATCTGTTCGACCAGCTTAGAG
*
102846764 GANTTAAGAATAAGTATCCACTGCCAAGGATTGACGATCTGTTTGACCAGCTTAGAG
1 GA-TTAAGAATAAGTATCCACTGCCAAGGATTGACGATCTGTTCGACCAGCTTAGAG
102846821 GA
1 GA
102846823 ACGTCTGCAT
Statistics
Matches: 57, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
56 2 0.04
57 55 0.96
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.25
Consensus pattern (56 bp):
GATTAAGAATAAGTATCCACTGCCAAGGATTGACGATCTGTTCGACCAGCTTAGAG
Found at i:102850643 original size:24 final size:24
Alignment explanation
Indices: 102849765--102850634 Score: 1713
Period size: 24 Copynumber: 36.2 Consensus size: 24
102849755 AGAAGATTCG
102849765 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102849789 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102849813 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102849837 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102849861 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102849885 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102849909 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102849933 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102849957 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102849981 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102850005 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102850029 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102850053 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102850077 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102850101 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102850125 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102850149 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102850173 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102850197 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102850221 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102850245 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102850269 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102850293 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102850317 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102850341 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102850365 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102850389 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102850413 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102850437 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102850461 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102850485 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102850509 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102850533 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102850557 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102850581 GGAGCTAATAAGGGAGAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
* * *
102850605 GGAGCTGATAAGGAAAAGGATTTA
1 GGAGCTAATAAGGGAGAGGATTTA
102850629 GGAGCT
1 GGAGCT
102850635 GATTAGGAAG
Statistics
Matches: 843, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 843 1.00
ACGTcount: A:0.37, C:0.04, G:0.37, T:0.21
Consensus pattern (24 bp):
GGAGCTAATAAGGGAGAGGATTTA
Found at i:102852121 original size:27 final size:27
Alignment explanation
Indices: 102852081--102852191 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
102852071 AGGATGCGTC
* *
102852081 CTGGTGGCTA-TGCCACAAGTATCTGAT
1 CTGGTGGC-ACTGCCACAATTATCTGTT
*
102852108 CTGGTGGCACTGCCAC-ATATATTTGTT
1 CTGGTGGCACTGCCACAAT-TATCTGTT
* *
102852135 CTAGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCACTGCCACAATTATCTGTT
* *
102852162 CTGGTGACACTGTCAC-ATTATCTGTT
1 CTGGTGGCACTGCCACAATTATCTGTT
102852188 CTGG
1 CTGG
102852192 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 16 0.23
27 53 0.75
28 2 0.03
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAATTATCTGTT
Found at i:102852166 original size:54 final size:53
Alignment explanation
Indices: 102852084--102852189 Score: 149
Period size: 54 Copynumber: 2.0 Consensus size: 53
102852074 ATGCGTCCTG
* *
102852084 GTGGCTATGCCACAAGTATCTGATCTGGTGGCACTGCCACATATATTTGTTCTA
1 GTGGCTATGCCACAAGTATCTGATCTGGTGACACTGCCACAT-TATCTGTTCTA
* * * *
102852138 GTGGCTCTGCCACAATTATCTGTTCTGGTGACACTGTCACATTATCTGTTCT
1 GTGGCTATGCCACAAGTATCTGATCTGGTGACACTGCCACATTATCTGTTCT
102852190 GGCAGCCATG
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
53 9 0.20
54 37 0.80
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (53 bp):
GTGGCTATGCCACAAGTATCTGATCTGGTGACACTGCCACATTATCTGTTCTA
Found at i:102852284 original size:56 final size:56
Alignment explanation
Indices: 102852204--102852314 Score: 186
Period size: 56 Copynumber: 2.0 Consensus size: 56
102852194 GCCATGCTGC
* *
102852204 ATATTTCTGTGGCATGTAGAGGTTGGGTGGGTCGAGTAGTCTCCCCCCATGGTGAT
1 ATATTTCTGTGGCATGTAGAGGTTGGGTGGGTCAAGTAGTCTCCCCACATGGTGAT
* *
102852260 ATATTTCTGTGGCGTGTAGTGGTTGGGTGGGTCAAGTAGTCTCCCCACATGGTGA
1 ATATTTCTGTGGCATGTAGAGGTTGGGTGGGTCAAGTAGTCTCCCCACATGGTGA
102852315 AAGGTTGGTA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 51 1.00
ACGTcount: A:0.16, C:0.17, G:0.34, T:0.32
Consensus pattern (56 bp):
ATATTTCTGTGGCATGTAGAGGTTGGGTGGGTCAAGTAGTCTCCCCACATGGTGAT
Done.