Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 310 of 322
Found at i:102853661 original size:21 final size:21
Alignment explanation
Indices: 102853635--102853683 Score: 98
Period size: 21 Copynumber: 2.3 Consensus size: 21
102853625 ATGGGTCAAT
102853635 GCAGTTGTGCATCGATTATTG
1 GCAGTTGTGCATCGATTATTG
102853656 GCAGTTGTGCATCGATTATTG
1 GCAGTTGTGCATCGATTATTG
102853677 GCAGTTG
1 GCAGTTG
102853684 AACAAACTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.18, C:0.14, G:0.31, T:0.37
Consensus pattern (21 bp):
GCAGTTGTGCATCGATTATTG
Found at i:102857054 original size:18 final size:18
Alignment explanation
Indices: 102857012--102857050 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
102857002 ATTGCCTACT
*
102857012 TTTCTTCTTCTTCTTTAA
1 TTTCTTCTTCTTCTTTAC
*
102857030 TTTCTTC-TCTTCTTTTC
1 TTTCTTCTTCTTCTTTAC
102857047 TTTC
1 TTTC
102857051 CTTCCATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.05, C:0.26, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTCTTCTTCTTCTTTAC
Found at i:102860571 original size:11 final size:11
Alignment explanation
Indices: 102860555--102860579 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
102860545 TGATAAGTAA
102860555 ATTATTATTTT
1 ATTATTATTTT
102860566 ATTATTATTTT
1 ATTATTATTTT
102860577 ATT
1 ATT
102860580 GTATGTGGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
ATTATTATTTT
Found at i:102863030 original size:262 final size:262
Alignment explanation
Indices: 102862560--102863063 Score: 599
Period size: 262 Copynumber: 1.9 Consensus size: 262
102862550 GACATGGGTG
* *
102862560 TGTGACTCAGCCATGTGAAGCACATGGCCTGGCAACACAACTGTGTGTCATCTGATGATTTCCTT
1 TGTGACTCAGCCATGTGAAGCACACGGCCTGGCAACACAACTGTATGTCATCTGATGATTTCCTT
* * *
102862625 AGGGTACAAGTCAAGGAGTTACACGGCCTAACACATAGCCTAGCACACATGTATGTGGGATAACT
66 AGGGTACAAGTCAAGGAGTTACACAGCCTAACACATAGCCTAGCACACATGCATGTGGGACAACT
** * ** *
102862690 CGGAGCGTTACACGGCCAAGAATACGAGTGTGTGACACGACCATGTGAATCTACTCAATGAGTTA
131 CAAAGCGTTACACGGCCAAGAACACGAGCATGTGACACGACCATGTGAACCTACTCAATGAGTTA
* * * * *
102862755 CACAGGTGAGGACACATGTTGGGACATGACCGTGTGTCCCTAGTTAACACAACTTGAGGCACACA
196 CACAGGTGAGGACACAAGCTAGGACACGACCGTATGTCCCTAGTTAACACAACTTGAGGCACACA
102862820 CA
261 CA
* * * * *
102862822 TGTGTCTCAGCCGTGTGAGGCACACGGCCTGGCGACACAGCTGTATGTCATCT-ACTGATTTCCT
1 TGTGACTCAGCCATGTGAAGCACACGGCCTGGCAACACAACTGTATGTCATCTGA-TGATTTCCT
* * * *
102862886 TAGGGTGCAAGT-TAGTGAGTTACACAGCTTAACACAT-GACCT-G-ACACATAAGCATGTGGGG
65 TAGGGTACAAGTCAAG-GAGTTACACAGCCTAACACATAG-CCTAGCACACAT--GCATGTGGGA
* * * * * * *
102862947 CAACTCAAAGTGTTACACGGCCTAGCACACTG-GCATGTGACACGGCCGTGTGACCCTACTCAGT
126 CAACTCAAAGCGTTACACGGCCAAGAACAC-GAGCATGTGACACGACCATGTGAACCTACTCAAT
*
102863011 GAGTTACAC-GAGTGAGGACACAAGCTAGGACACGATCGTATGTCCCTAGTTAA
190 GAGTTACACAG-GTGAGGACACAAGCTAGGACACGACCGTATGTCCCTAGTTAA
102863064 AAAGTTACAT
Statistics
Matches: 202, Mismatches: 33, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
260 6 0.03
261 6 0.03
262 189 0.94
263 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.23
Consensus pattern (262 bp):
TGTGACTCAGCCATGTGAAGCACACGGCCTGGCAACACAACTGTATGTCATCTGATGATTTCCTT
AGGGTACAAGTCAAGGAGTTACACAGCCTAACACATAGCCTAGCACACATGCATGTGGGACAACT
CAAAGCGTTACACGGCCAAGAACACGAGCATGTGACACGACCATGTGAACCTACTCAATGAGTTA
CACAGGTGAGGACACAAGCTAGGACACGACCGTATGTCCCTAGTTAACACAACTTGAGGCACACA
CA
Found at i:102871361 original size:11 final size:12
Alignment explanation
Indices: 102871336--102871361 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
102871326 CTGAGTCAGG
102871336 AAAATATTTTAA
1 AAAATATTTTAA
102871348 AAAATATTTTAA
1 AAAATATTTTAA
102871360 AA
1 AA
102871362 TTATTTTCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
AAAATATTTTAA
Found at i:102872565 original size:45 final size:45
Alignment explanation
Indices: 102872503--102872848 Score: 304
Period size: 45 Copynumber: 7.9 Consensus size: 45
102872493 TAGGATTTCG
*
102872503 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
1 ATATGTATTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
** *
102872548 ATATGTATTTTTTTGTAAGACCACGTCTAGGACGTTGGCATCGAT
1 ATATGTATTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
** * * * * *
102872593 ATATGTGGTTACGTGTAAGACCATGTCTGGGACATCGACATCG-T
1 ATATGTATTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* * * *
102872637 ATTTG-A--TTCGTGTAAAACAACGTCTGGGATGTTGGCATCGAT
1 ATATGTATTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
*
102872679 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
1 ATATGTATTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* ** * * * * * * *
102872724 AAATGTGGTTACATGTAAGACCATGTCTGAGACATCGGCATTG-T
1 ATATGTATTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
*
102872768 ATTTG-A--TTCGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGAT
1 ATATGTATTTTCGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGAT
** *
102872810 ATGA-G-A-TAGCATGTAAGACCACGTCTGGGACGTTGGCAT
1 AT-ATGTATTTTCGTGTAAGACCACGTCTGGGACGTTGGCAT
102872849 TGTTCAATAT
Statistics
Matches: 238, Mismatches: 52, Indels: 24
0.76 0.17 0.08
Matches are distributed among these distances:
41 51 0.21
42 11 0.05
43 25 0.11
44 10 0.04
45 141 0.59
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (45 bp):
ATATGTATTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
Found at i:102872746 original size:131 final size:130
Alignment explanation
Indices: 102872512--102872848 Score: 455
Period size: 131 Copynumber: 2.6 Consensus size: 130
102872502 GATATGTGTT
* * ** *
102872512 TTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTATTTTTTTGTAAGACCACGTCTA
1 TTCGTGTAAGA-CACGTCTGGGAAGTTGGCATCGATATATGTGTTTTCATGTAAGACCACGTCTG
* * *
102872577 GGACGTTGGCATCGATATATGTGGTTACGTGTAAGACCATGTCTGGGACATCGACATCGTATTTG
65 GGACGTTGGCATCGATAAATGTGGTTACATGTAAGACCATGTCTGAGACATCGACATCGTATTTG
102872642 A
130 A
* * *
102872643 TTCGTGTAAAACAACGTCTGGGATGTTGGCATCGATATATGTGTTTTCGTGTAAGACCACGTCTG
1 TTCGTGTAAGAC-ACGTCTGGGAAGTTGGCATCGATATATGTGTTTTCATGTAAGACCACGTCTG
* *
102872708 GGACGTTGGCATCGATAAATGTGGTTACATGTAAGACCATGTCTGAGACATCGGCATTGTATTTG
65 GGACGTTGGCATCGATAAATGTGGTTACATGTAAGACCATGTCTGAGACATCGACATCGTATTTG
102872773 A
130 A
* * * **
102872774 TTCGTGTAAGACCCTGTCTGGGACAG-TGGCATCG--ATATGAGATAGCATGTAAGACCACGTCT
1 TTCGTGTAAGACAC-GTCTGGGA-AGTTGGCATCGATATATGTGTTTTCATGTAAGACCACGTCT
102872836 GGGACGTTGGCAT
64 GGGACGTTGGCAT
102872849 TGTTCAATAT
Statistics
Matches: 184, Mismatches: 19, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
129 36 0.20
130 2 0.01
131 145 0.79
132 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (130 bp):
TTCGTGTAAGACACGTCTGGGAAGTTGGCATCGATATATGTGTTTTCATGTAAGACCACGTCTGG
GACGTTGGCATCGATAAATGTGGTTACATGTAAGACCATGTCTGAGACATCGACATCGTATTTGA
Found at i:102874603 original size:6 final size:6
Alignment explanation
Indices: 102874585--102874684 Score: 89
Period size: 6 Copynumber: 16.3 Consensus size: 6
102874575 AAGAAACATT
* *
102874585 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA ATTAGT ATCAGGTA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
* * *
102874635 A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
102874683 AT
1 AT
102874685 GTGAATGCAA
Statistics
Matches: 76, Mismatches: 10, Indels: 16
0.75 0.10 0.16
Matches are distributed among these distances:
5 5 0.07
6 62 0.82
7 7 0.09
8 2 0.03
ACGTcount: A:0.49, C:0.15, G:0.16, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:102874643 original size:31 final size:31
Alignment explanation
Indices: 102874605--102874684 Score: 142
Period size: 31 Copynumber: 2.6 Consensus size: 31
102874595 GAATCAGAAT
* *
102874605 CAGAATCAGAATCAGAATTAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
102874636 CAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
102874667 CAGAATCAAAATCAGAAT
1 CAGAATCAAAATCAGAAT
102874685 GTGAATGCAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.49, C:0.15, G:0.16, T:0.20
Consensus pattern (31 bp):
CAGAATCAAAATCAGAATCAGTATCAGGTAA
Found at i:102874858 original size:27 final size:26
Alignment explanation
Indices: 102874816--102874917 Score: 123
Period size: 27 Copynumber: 3.8 Consensus size: 26
102874806 GCTCAGTTAT
* *
102874816 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
*
102874843 CAAATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
102874869 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
102874897 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
102874918 TTAACAGAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 6 0.09
27 52 0.79
28 8 0.12
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:102875625 original size:27 final size:27
Alignment explanation
Indices: 102875567--102876120 Score: 840
Period size: 27 Copynumber: 20.6 Consensus size: 27
102875557 GGGGCAAAAT
* * *
102875567 GGTAATTTTACCCCACAA-GGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
102875593 GATAATTCTACCCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
102875620 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
102875647 GGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
102875674 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
102875701 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
102875728 GATAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
102875755 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
102875782 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
102875809 GGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
102875836 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
102875863 GGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
102875890 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
102875917 GGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
102875944 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
102875971 GGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
102875998 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
102876025 GGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
102876052 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
102876079 GGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
102876106 GGTAATTCTACCCTA
1 GGTAATTCTACCCTA
102876121 TAAATAAAGG
Statistics
Matches: 476, Mismatches: 51, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
26 14 0.03
27 462 0.97
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:102875654 original size:54 final size:54
Alignment explanation
Indices: 102875567--102876120 Score: 948
Period size: 54 Copynumber: 10.3 Consensus size: 54
102875557 GGGGCAAAAT
* * * * * * * *
102875567 GGTAATTTTACCCCACA-AGGTATCTCGATAATTCTACCCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAAGGGTATTTC
*
102875620 AGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAAGGGTATTTC
* * *
102875674 GGTAATTCTACCCTACAGGGGTATTTTGGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAAGGGTATTTC
* * * * *
102875728 GATAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAAGGGTATTTC
102875782 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAAGGGTATTTC
102875836 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAAGGGTATTTC
102875890 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAAGGGTATTTC
102875944 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAAGGGTATTTC
102875998 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAAGGGTATTTC
102876052 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAAGGGTATTTC
102876106 GGTAATTCTACCCTA
1 GGTAATTCTACCCTA
102876121 TAAATAAAGG
Statistics
Matches: 476, Mismatches: 24, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
53 14 0.03
54 462 0.97
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAAGGGTATTTC
Found at i:102876560 original size:85 final size:86
Alignment explanation
Indices: 102876415--102876582 Score: 266
Period size: 85 Copynumber: 2.0 Consensus size: 86
102876405 CATCCTACAG
** *
102876415 CTAGAGTAGCGAGAAAATATGCACCTGATTCGAGACTGGAGTTAATCCACGCTCCAAGCACTCTT
1 CTAGAGTAGCGAGAAAATACACACCTAATTCGAGACTGGAGTTAATCCACGCTCCAAGCACTCTT
*
102876480 AGCCGGCGCCCAACCCAACAA
66 AGCCGACGCCCAACCCAACAA
* * *
102876501 CTAGAGTAGTGAG-AAATACACACCTAATTGGAGACTGGAGTTAATCCACGCTCCGAGCACTCTT
1 CTAGAGTAGCGAGAAAATACACACCTAATTCGAGACTGGAGTTAATCCACGCTCCAAGCACTCTT
102876565 AGCCGACGCCCAACCCAA
66 AGCCGACGCCCAACCCAA
102876583 ACGAGCACGC
Statistics
Matches: 75, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
85 63 0.84
86 12 0.16
ACGTcount: A:0.32, C:0.30, G:0.21, T:0.18
Consensus pattern (86 bp):
CTAGAGTAGCGAGAAAATACACACCTAATTCGAGACTGGAGTTAATCCACGCTCCAAGCACTCTT
AGCCGACGCCCAACCCAACAA
Found at i:102876940 original size:71 final size:71
Alignment explanation
Indices: 102876850--102876991 Score: 275
Period size: 71 Copynumber: 2.0 Consensus size: 71
102876840 AGGCTTTTTG
102876850 TGTCACAATTTCTCAAACAATATTCTTAAGGCCTACCTACTACACCTAGGGTTGATTCACCTTAA
1 TGTCACAATTTCTCAAACAATATTCTTAAGGCCTACCTACTACACCTAGGGTTGATTCACCTTAA
102876915 ACCAAA
66 ACCAAA
*
102876921 TGTCACAATTTCTCCAACAATATTCTTAAGGCCTACCTACTACACCTAGGGTTGATTCACCTTAA
1 TGTCACAATTTCTCAAACAATATTCTTAAGGCCTACCTACTACACCTAGGGTTGATTCACCTTAA
102876986 ACCAAA
66 ACCAAA
102876992 ATTTTTGCTA
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 70 1.00
ACGTcount: A:0.33, C:0.27, G:0.10, T:0.30
Consensus pattern (71 bp):
TGTCACAATTTCTCAAACAATATTCTTAAGGCCTACCTACTACACCTAGGGTTGATTCACCTTAA
ACCAAA
Found at i:102880235 original size:42 final size:43
Alignment explanation
Indices: 102880117--102880236 Score: 136
Period size: 43 Copynumber: 2.8 Consensus size: 43
102880107 CATACAATAC
* * ***
102880117 CATACCAATGTCATATCCCAGATATGGTCTTACA-TGGGATCT
1 CATATCAATGCCATATCCCAGATATGGTCTTACACAAAGATCT
* * *
102880159 CATATTAATGCCAATAGCCCAGCTATGGTCTTACACAAAG-TCT
1 CATATCAATGCC-ATATCCCAGATATGGTCTTACACAAAGATCT
*
102880202 CATATCGATGCCATATCCCAGATATGGTCTTACAC
1 CATATCAATGCCATATCCCAGATATGGTCTTACAC
102880237 GTAATCTTAG
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
42 30 0.47
43 33 0.52
44 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (43 bp):
CATATCAATGCCATATCCCAGATATGGTCTTACACAAAGATCT
Found at i:102884508 original size:37 final size:37
Alignment explanation
Indices: 102884449--102884550 Score: 168
Period size: 37 Copynumber: 2.8 Consensus size: 37
102884439 AGCTCAGACG
* *
102884449 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACATGTAGTCATCGGGTCTTACCCGGACA
102884486 AAATCTCCACATGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACATGTAGTCATCGGGTCTTACCCGGACA
* *
102884523 TAATCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACATGTAGTCATCGGGTCTT
102884551 TAGAGCTCGG
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (37 bp):
AAATCTCCACATGTAGTCATCGGGTCTTACCCGGACA
Found at i:102884747 original size:47 final size:47
Alignment explanation
Indices: 102884669--102884985 Score: 562
Period size: 47 Copynumber: 6.7 Consensus size: 47
102884659 CCCTTCGGGA
* * * * * *
102884669 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
102884716 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102884763 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102884810 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102884857 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102884904 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102884951 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
102884986 AGAATCCTAA
Statistics
Matches: 260, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 260 1.00
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:102895545 original size:85 final size:85
Alignment explanation
Indices: 102895402--102895572 Score: 342
Period size: 85 Copynumber: 2.0 Consensus size: 85
102895392 NNNNNNNNNN
102895402 CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
1 CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
102895467 ACATCTTGTCCACCCATGCT
66 ACATCTTGTCCACCCATGCT
102895487 CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
1 CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
102895552 ACATCTTGTCCACCCATGCT
66 ACATCTTGTCCACCCATGCT
102895572 C
1 C
102895573 ATGGCTGGCC
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 86 1.00
ACGTcount: A:0.27, C:0.26, G:0.08, T:0.39
Consensus pattern (85 bp):
CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
ACATCTTGTCCACCCATGCT
Found at i:102906584 original size:22 final size:22
Alignment explanation
Indices: 102906559--102906603 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
102906549 AATGATAGTA
102906559 AGGCCTAATGGCCGATGTGATG
1 AGGCCTAATGGCCGATGTGATG
102906581 AGGCCTAATGGCCGATGTGATG
1 AGGCCTAATGGCCGATGTGATG
102906603 A
1 A
102906604 ATGTGAAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.24, C:0.18, G:0.36, T:0.22
Consensus pattern (22 bp):
AGGCCTAATGGCCGATGTGATG
Found at i:102906668 original size:46 final size:46
Alignment explanation
Indices: 102906573--102907451 Score: 1589
Period size: 46 Copynumber: 18.9 Consensus size: 46
102906563 CTAATGGCCG
*
102906573 ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATAT
102906620 ATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGTATAT
102906666 ATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGTATAT
102906712 ATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGTATAT
102906758 ATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGTATAT
102906804 ATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGTATAT
102906850 ATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGTATAT
102906896 ATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGTATAT
102906942 ATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGTATAT
102906988 ATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGTATAT
102907034 ATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGTATAT
102907080 ATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGTATAT
102907126 ATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGTATAT
102907172 ATGTGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATAT
*
102907218 ATGTGATAATGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATAT
102907265 ATGTGATAAGGCCTAATGGCCGATGTGCTGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATAT
*
102907312 ATGTGATACGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGATAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTG--TATAT
* *
102907361 ATGTGATAGGGCCTAATGGCCGATGTGATGAATTTGAAAGTGTATATAT
1 ATGTGATAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTG--TATAT
*
102907410 ATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 ATGTGATAAGGCCTAATGGCCGATGTG-TGAATGTGA-AAGT
102907452 CCCAAAGGGC
Statistics
Matches: 818, Mismatches: 9, Indels: 7
0.98 0.01 0.01
Matches are distributed among these distances:
45 19 0.02
46 558 0.68
47 149 0.18
49 88 0.11
50 4 0.00
ACGTcount: A:0.30, C:0.09, G:0.30, T:0.30
Consensus pattern (46 bp):
ATGTGATAAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGTATAT
Found at i:102907268 original size:25 final size:25
Alignment explanation
Indices: 102907193--102907271 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
102907183 CTAATGGCCG
102907193 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
*** ****
102907218 ATGTGAT-AATGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
102907240 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
102907265 ATGTGAT
1 ATGTGAT
102907272 AAGGCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.33, C:0.05, G:0.28, T:0.34
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:102907624 original size:36 final size:37
Alignment explanation
Indices: 102907569--102907646 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
102907559 CCGAGCTCTA
* *
102907569 AAGACCCGATGACTACGTGTGGGGATT-TGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
102907605 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
102907642 AAGAC
1 AAGAC
102907647 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 24 0.63
37 14 0.37
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.24
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:102924149 original size:38 final size:39
Alignment explanation
Indices: 102924097--102924172 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 39
102924087 GCATGTTAGT
*
102924097 GAGAATGGTTTTCTATTAAAATGAGAAAGAATTGAATAC
1 GAGAATAGTTTTCTATTAAAATGAGAAAGAATTGAATAC
*
102924136 GAGAATAG-TTTCTATTAAAATGATAAAGAATTGAATA
1 GAGAATAGTTTTCTATTAAAATGAGAAAGAATTGAATA
102924173 GCTTAAAAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
38 28 0.80
39 7 0.20
ACGTcount: A:0.46, C:0.04, G:0.18, T:0.32
Consensus pattern (39 bp):
GAGAATAGTTTTCTATTAAAATGAGAAAGAATTGAATAC
Found at i:102924881 original size:22 final size:22
Alignment explanation
Indices: 102924856--102924902 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
102924846 TTGGCGTAAG
102924856 TTTAAATGATTGTATATGAAGA
1 TTTAAATGATTGTATATGAAGA
102924878 TTTAAATGATTGTATATGAAGA
1 TTTAAATGATTGTATATGAAGA
102924900 TTT
1 TTT
102924903 CGTGAGTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.38, C:0.00, G:0.17, T:0.45
Consensus pattern (22 bp):
TTTAAATGATTGTATATGAAGA
Found at i:102928067 original size:40 final size:40
Alignment explanation
Indices: 102928012--102928195 Score: 237
Period size: 40 Copynumber: 4.6 Consensus size: 40
102928002 CTCGTACAAG
* * *
102928012 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* *
102928052 GCCTTCAGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
102928092 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGTACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAAT
* *
102928132 GCCTTC-GGATCTTAGTCCGGATATAGTCACTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCACTAGCACAAAT
*
102928172 GCCTTCGGGACTTAGCCTGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
102928196 CATTCGAATA
Statistics
Matches: 123, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 3 0.02
40 116 0.94
41 4 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:102936974 original size:40 final size:40
Alignment explanation
Indices: 102936912--102937129 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
102936902 AAGCCAAGTA
* * * *
102936912 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
102936951 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
102936991 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
102937031 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
102937071 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
102937111 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
102937130 TTATCATCCA
Statistics
Matches: 164, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
39 13 0.08
40 151 0.92
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:102952291 original size:46 final size:46
Alignment explanation
Indices: 102952191--102952309 Score: 143
Period size: 46 Copynumber: 2.5 Consensus size: 46
102952181 TTATGAGAGC
* * * *
102952191 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGTG
1 CAGTGTAAGA-CATGTTTGGGACATGACATCGGCATCGAGATAAGTG
*
102952238 CTAGTGTAAGACATGTTTGGGACAT-ACATCGGCCTCGAGACGTAAGT-
1 C-AGTGTAAGACATGTTTGGGACATGACATCGGCATCGAGA--TAAGTG
102952285 CAGTGTAAGACATGTTTGGGACATG
1 CAGTGTAAGACATGTTTGGGACATG
102952310 CATTAGCTAC
Statistics
Matches: 63, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
46 35 0.56
47 15 0.24
48 13 0.21
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (46 bp):
CAGTGTAAGACATGTTTGGGACATGACATCGGCATCGAGATAAGTG
Found at i:102952323 original size:46 final size:44
Alignment explanation
Indices: 102952191--102952354 Score: 134
Period size: 46 Copynumber: 3.6 Consensus size: 44
102952181 TTATGAGAGC
* * * * *
102952191 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATG-AGT
1 CAGTGTAAGA-CATGTTTGGGACAT-GCATCAGCCTCGAGACGTA-T
* *
102952237 GCTAGTGTAAGACATGTTTGGGACATACATCGGCCTCGAGACGTAAGT
1 -C-AGTGTAAGACATGTTTGGGACATGCATCAGCCTCGAGACGT-A-T
* *
102952285 CAGTGTAAGACATGTTTGGGACATGCATTAG-CTACGAGATGTAT
1 CAGTGTAAGACATGTTTGGGACATGCATCAGCCT-CGAGACGTAT
* *
102952329 CAGTGTAAGATCATGTCTGGAACATG
1 CAGTGTAAGA-CATGTTTGGGACATG
102952355 GTATCGACAC
Statistics
Matches: 101, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
44 11 0.11
45 16 0.16
46 47 0.47
47 15 0.15
48 12 0.12
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.26
Consensus pattern (44 bp):
CAGTGTAAGACATGTTTGGGACATGCATCAGCCTCGAGACGTAT
Found at i:102956217 original size:15 final size:15
Alignment explanation
Indices: 102956197--102956229 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
102956187 TGTGCCGGGT
102956197 GACGGGATTAGAGTA
1 GACGGGATTAGAGTA
102956212 GACGGGATTAGAGTA
1 GACGGGATTAGAGTA
102956227 GAC
1 GAC
102956230 CCAAGCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.33, C:0.09, G:0.39, T:0.18
Consensus pattern (15 bp):
GACGGGATTAGAGTA
Found at i:102959748 original size:46 final size:45
Alignment explanation
Indices: 102959604--102959766 Score: 143
Period size: 46 Copynumber: 3.5 Consensus size: 45
102959594 TGTGTGAGCT
* * * *
102959604 AGTGTAAGACATGTTTGGGACATGCATCGGCCACCTTATGAG--AGCC
1 AGTGTAAGACATGTTTGGGACATACATCGGCC-TC-GA-GAGTAAGTC
* * * * * *
102959650 AGTATAAGACCATGTCTAGGACATGACATCGGCATTGAGA-TGAGTGC
1 AGTGTAAGA-CATGTTTGGGACAT-ACATCGGCCTCGAGAGTAAGT-C
102959697 TAGTGTAAGACATGTTTGGGACATACATCGGCCTCGAGACGTAAGTC
1 -AGTGTAAGACATGTTTGGGACATACATCGGCCTCGAGA-GTAAGTC
102959744 AGTGTAAGACATGTTTGGGACAT
1 AGTGTAAGACATGTTTGGGACAT
102959767 GCATTAGCTA
Statistics
Matches: 94, Mismatches: 15, Indels: 16
0.75 0.12 0.13
Matches are distributed among these distances:
45 2 0.02
46 47 0.50
47 26 0.28
48 19 0.20
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (45 bp):
AGTGTAAGACATGTTTGGGACATACATCGGCCTCGAGAGTAAGTC
Found at i:102963748 original size:43 final size:43
Alignment explanation
Indices: 102963658--102963769 Score: 129
Period size: 43 Copynumber: 2.6 Consensus size: 43
102963648 TACCGAGATG
* * *
102963658 TGATTACATGTAAGACCATGTCTGGTACATTGACATTGTATTG
1 TGATTACATGTAAGACCATGTCTGGGACATTGACATCGTATTA
*
102963701 TGATTACATGTAAGGCCATGTCTGGGACATTAGA-ATCGCTA-TA
1 TGATTACATGTAAGACCATGTCTGGGACATT-GACATCG-TATTA
* * *
102963744 TGATTTCGTGTAAGACCCTGTCTGGG
1 TGATTACATGTAAGACCATGTCTGGG
102963770 GCAGTGGCAT
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
43 55 0.93
44 4 0.07
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (43 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGACATCGTATTA
Found at i:102974984 original size:85 final size:85
Alignment explanation
Indices: 102974855--102975118 Score: 510
Period size: 85 Copynumber: 3.1 Consensus size: 85
102974845 TATTTTATTG
*
102974855 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCATTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
*
102974920 TTGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
102974940 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
102975005 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
102975025 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
102975090 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
102975110 CCCATGCTC
1 CCCATGCTC
102975119 ATGGCCGGCC
Statistics
Matches: 177, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 177 1.00
ACGTcount: A:0.26, C:0.27, G:0.08, T:0.39
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:102977555 original size:198 final size:198
Alignment explanation
Indices: 102977203--102977599 Score: 668
Period size: 198 Copynumber: 2.0 Consensus size: 198
102977193 GGTCGGATAA
* * *
102977203 TTTTTCTCATGTGGCTTTAATTGTCTCGACGCATAGGCCACCACTCGACCTTCTTGCATCAATAC
1 TTTTTCTCATGTGGCTTTAATTGTCTCGACGCATAGGCCACAACTCGACCTTCTTACATCAACAC
* *
102977268 GCAACCCAACCCAAGTAGGGATACGTCACTATAAATGACAAACTCTTTGCCAGATTCGGGTTGCA
66 GCAACCCAACCCAAGTAGGGAGACGTCACTATAAATGACAAACTCTTTGCCAGATTCGGGCTGCA
* *
102977333 CTAAAATTGGAGCTTCAGTCAAATAAGTTTTCAGTTGATCGAAACTTTTCTGACATTTCTCCGTC
131 CTAAAATTGGAGCTTCAATCAAATAAGTTTTCAGTTGATCAAAACTTTTCTGACATTTCTCCGTC
102977398 CAT
196 CAT
*
102977401 TTTTTCTCATGTGGCTTTAATTGTCTCGATGCATAGGCCACAACTCGACCTTCTTACATCAACAC
1 TTTTTCTCATGTGGCTTTAATTGTCTCGACGCATAGGCCACAACTCGACCTTCTTACATCAACAC
* * * *
102977466 GCAACCTAACCCAAGTAGGGAGGCGTCACTATAGATGACAAACTCTTTGCCTGATTCGGGCTGCA
66 GCAACCCAACCCAAGTAGGGAGACGTCACTATAAATGACAAACTCTTTGCCAGATTCGGGCTGCA
* *
102977531 CTAAAATTGGGGCTTCAATCAAATAAGTTTTCAGTTGATCAAAACTTTTCTGACATTTTTCCGTC
131 CTAAAATTGGAGCTTCAATCAAATAAGTTTTCAGTTGATCAAAACTTTTCTGACATTTCTCCGTC
102977596 CAT
196 CAT
102977599 T
1 T
102977600 CGAACTTAAT
Statistics
Matches: 185, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
198 185 1.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.32
Consensus pattern (198 bp):
TTTTTCTCATGTGGCTTTAATTGTCTCGACGCATAGGCCACAACTCGACCTTCTTACATCAACAC
GCAACCCAACCCAAGTAGGGAGACGTCACTATAAATGACAAACTCTTTGCCAGATTCGGGCTGCA
CTAAAATTGGAGCTTCAATCAAATAAGTTTTCAGTTGATCAAAACTTTTCTGACATTTCTCCGTC
CAT
Found at i:102989755 original size:11 final size:11
Alignment explanation
Indices: 102989739--102989765 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
102989729 TGTTCGCTCG
102989739 TTTTGAATTTA
1 TTTTGAATTTA
102989750 TTTTGAATTTA
1 TTTTGAATTTA
102989761 TTTTG
1 TTTTG
102989766 TCTTAATTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.00, G:0.11, T:0.67
Consensus pattern (11 bp):
TTTTGAATTTA
Found at i:102997910 original size:30 final size:30
Alignment explanation
Indices: 102997875--102997936 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
102997865 CTATGGAAGT
102997875 GGGAAAGAGCAACAATGGACTTTGTGAGTG
1 GGGAAAGAGCAACAATGGACTTTGTGAGTG
*
102997905 GGGAAAGAGTAACAATGGACTTTGTGAGTG
1 GGGAAAGAGCAACAATGGACTTTGTGAGTG
102997935 GG
1 GG
102997937 TTACCTTTGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.32, C:0.08, G:0.39, T:0.21
Consensus pattern (30 bp):
GGGAAAGAGCAACAATGGACTTTGTGAGTG
Found at i:103003317 original size:17 final size:17
Alignment explanation
Indices: 103003281--103003334 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
103003271 GAGAACGAAA
*
103003281 GAGAGCAAAAAGAGATT
1 GAGAGCAAAAAGAAATT
103003298 GAGAGCAAAAA-AAATGT
1 GAGAGCAAAAAGAAAT-T
* *
103003315 GAGAACGAAAAGAAAGTT
1 GAGAGCAAAAAGAAA-TT
103003333 GA
1 GA
103003335 AAAAGAGATT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
16 3 0.10
17 21 0.68
18 6 0.19
19 1 0.03
ACGTcount: A:0.56, C:0.06, G:0.28, T:0.11
Consensus pattern (17 bp):
GAGAGCAAAAAGAAATT
Found at i:103006636 original size:43 final size:43
Alignment explanation
Indices: 103006501--103006657 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 43
103006491 TGTGTTATCG
* *
103006501 TGTAAGACCACGTCTAGGAC-GTTGGCATCGACT-TATGATTTACG
1 TGTAAGACCACGTCTAGGACAG-TGGCATCGA-TATTTGA-TTACA
* * * * * * *
103006545 TGTAAGACCATGTCTGGGACATTAGCATTG-TATTTAATTTCA
1 TGTAAGACCACGTCTAGGACAGTGGCATCGATATTTGATTACA
*
103006587 TGTAAGACC-CTGTCTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTAGGACAGTGGCATCGATATTTGATTACA
*
103006630 TGTAAGACCACGTCTAGGACATTGGCAT
1 TGTAAGACCACGTCTAGGACAGTGGCAT
103006658 TGTACGAGAT
Statistics
Matches: 91, Mismatches: 17, Indels: 11
0.76 0.14 0.09
Matches are distributed among these distances:
42 29 0.32
43 37 0.41
44 25 0.27
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTAGGACAGTGGCATCGATATTTGATTACA
Found at i:103006659 original size:85 final size:86
Alignment explanation
Indices: 103006501--103006661 Score: 213
Period size: 85 Copynumber: 1.9 Consensus size: 86
103006491 TGTGTTATCG
* * *
103006501 TGTAAGACCACGTCTAGGACGTTGGCATCGACTTATGATTTACGTGTAAGACCATGTCTGGGACA
1 TGTAAGACCACGTCTAGGACGTTGGCATCGACTTATGATTTACATGTAAGACCACGTCTAGGACA
103006566 TTAGCATTGTATTTAATTTCA
66 TTAGCATTGTATTTAATTTCA
* *
103006587 TGTAAGACC-CTGTCTGGGACAG-TGGCATCGA-TATTTGA-TTACATGTAAGACCACGTCTAGG
1 TGTAAGACCAC-GTCTAGGAC-GTTGGCATCGACT-TATGATTTACATGTAAGACCACGTCTAGG
*
103006648 ACATTGGCATTGTA
63 ACATTAGCATTGTA
103006662 CGAGATTTCT
Statistics
Matches: 66, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
85 35 0.53
86 30 0.45
87 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32
Consensus pattern (86 bp):
TGTAAGACCACGTCTAGGACGTTGGCATCGACTTATGATTTACATGTAAGACCACGTCTAGGACA
TTAGCATTGTATTTAATTTCA
Found at i:103015042 original size:93 final size:93
Alignment explanation
Indices: 103014927--103015097 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
103014917 GCCCATAAGT
* * *
103014927 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
103014992 CGCGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
103015020 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
103015085 CGAGTTCGGATGC
66 CGAGTTCGGATGC
103015098 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:103015094 original size:46 final size:46
Alignment explanation
Indices: 103014919--103015094 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
103014909 TGTAACCCGC
* * *
103014919 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
103014965 CCATAAGTGAACTTGGACTCAACTCAACGCGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
103015015 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
103015058 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
103015095 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 62 0.58
47 27 0.25
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:103025726 original size:19 final size:17
Alignment explanation
Indices: 103025702--103025744 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 17
103025692 CCCAATATTC
103025702 CCCACACGTTCGTGTGGGG
1 CCCACACGTTC--GTGGGG
*
103025721 CCCACATGTTCGTGGGG
1 CCCACACGTTCGTGGGG
103025738 CCCACAC
1 CCCACAC
103025745 AGCTTAGTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 12 0.55
19 10 0.45
ACGTcount: A:0.14, C:0.37, G:0.30, T:0.19
Consensus pattern (17 bp):
CCCACACGTTCGTGGGG
Found at i:103025745 original size:19 final size:19
Alignment explanation
Indices: 103025701--103025744 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
103025691 GCCCAATATT
103025701 CCCCACACGTTCGTGTGGG
1 CCCCACACGTTCGTGTGGG
* *
103025720 GCCCACATGTTCGTG-GGG
1 CCCCACACGTTCGTGTGGG
103025738 -CCCACAC
1 CCCCACAC
103025745 AGCTTAGTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 6 0.27
18 3 0.14
19 13 0.59
ACGTcount: A:0.14, C:0.39, G:0.30, T:0.18
Consensus pattern (19 bp):
CCCCACACGTTCGTGTGGG
Found at i:103032886 original size:28 final size:27
Alignment explanation
Indices: 103032834--103032886 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
103032824 ACTGTACTAG
**
103032834 TGGCTTTGCCACATATACTGTTACTGT
1 TGGCTTTGCCACATATACTCATACTGT
*
103032861 TGGCTTTTGCCATATATACTCATACT
1 TGGC-TTTGCCACATATACTCATACT
103032887 TGTAGCTTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 4 0.18
28 18 0.82
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.42
Consensus pattern (27 bp):
TGGCTTTGCCACATATACTCATACTGT
Found at i:103037648 original size:19 final size:19
Alignment explanation
Indices: 103037628--103037669 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
103037618 AACTAAGCTG
103037628 TGTGGG-CCC-CACGAACA
1 TGTGGGCCCCACACGAACA
*
103037645 TGTGGGCCCCACACGAACG
1 TGTGGGCCCCACACGAACA
103037664 TGTGGG
1 TGTGGG
103037670 GAATATTGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.27
18 3 0.14
19 13 0.59
ACGTcount: A:0.19, C:0.31, G:0.36, T:0.14
Consensus pattern (19 bp):
TGTGGGCCCCACACGAACA
Found at i:103048143 original size:40 final size:40
Alignment explanation
Indices: 103048096--103048299 Score: 268
Period size: 40 Copynumber: 5.1 Consensus size: 40
103048086 CGGGCTTTAA
** * *
103048096 CCGGATATAGCCACTCACTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
** *
103048136 CCGGATATAGTAGTTTGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
103048176 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
103048216 CCGGA-ATTAGTAACTCGCACAAATTCCTTCGGTACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
103048256 CC-GAAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
103048296 CCGG
1 CCGG
103048300 TTATCATCCG
Statistics
Matches: 145, Mismatches: 16, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 3 0.02
40 141 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:103056178 original size:40 final size:40
Alignment explanation
Indices: 103056131--103056334 Score: 268
Period size: 40 Copynumber: 5.1 Consensus size: 40
103056121 CGGGCTTTAA
** *
103056131 CCGGATATAGCCACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
** *
103056171 CCGGATATAGTAGTTCGCACAAATGCCTTCGGGACTTGGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
103056211 CTGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
103056251 CCGGA-ATTAGTAACTCGCACAAATGACTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
** * *
103056291 CCGGA-ATTAGTCGCTAGCACAAATGCCTTCGAGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
103056331 CCGG
1 CCGG
103056335 TTATCATCCA
Statistics
Matches: 146, Mismatches: 17, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
39 1 0.01
40 145 0.99
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:103063106 original size:30 final size:30
Alignment explanation
Indices: 103063023--103063113 Score: 87
Period size: 30 Copynumber: 3.1 Consensus size: 30
103063013 AGCTAAACCG
* * *
103063023 AGCTCACAAGCTAAACCTTAGCTCAACTTC
1 AGCTCACGAGCTAAAGCTTAGCTCAACTTT
* * ** *
103063053 AGCTTAGGAG-TTTAGCCTCAGCTCAACTTT
1 AGCTCACGAGCTAAAG-CTTAGCTCAACTTT
103063083 AGCTCACGAGCTAAAGCTTAGCTCAA-TTT
1 AGCTCACGAGCTAAAGCTTAGCTCAACTTT
103063112 AG
1 AG
103063114 TTTAAACTCA
Statistics
Matches: 46, Mismatches: 13, Indels: 5
0.72 0.20 0.08
Matches are distributed among these distances:
29 7 0.15
30 36 0.78
31 3 0.07
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (30 bp):
AGCTCACGAGCTAAAGCTTAGCTCAACTTT
Found at i:103064803 original size:12 final size:11
Alignment explanation
Indices: 103064784--103064827 Score: 70
Period size: 11 Copynumber: 3.9 Consensus size: 11
103064774 GTTATACAAG
103064784 TCAAAAAAAAT
1 TCAAAAAAAAT
*
103064795 TCGAAAAAAGAT
1 TC-AAAAAAAAT
103064807 TCAAAAAAAAT
1 TCAAAAAAAAT
103064818 TCAAAAAAAA
1 TCAAAAAAAA
103064828 ATCTGAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
11 20 0.67
12 10 0.33
ACGTcount: A:0.70, C:0.09, G:0.05, T:0.16
Consensus pattern (11 bp):
TCAAAAAAAAT
Found at i:103064828 original size:12 final size:12
Alignment explanation
Indices: 103064786--103064839 Score: 65
Period size: 12 Copynumber: 4.5 Consensus size: 12
103064776 TATACAAGTC
*
103064786 AAAAAAAATTCG
1 AAAAAAAATTCA
*
103064798 AAAAAAGATTC-
1 AAAAAAAATTCA
103064809 AAAAAAAATTCA
1 AAAAAAAATTCA
*
103064821 AAAAAAAATCTGA
1 AAAAAAAAT-TCA
103064834 AAAAAA
1 AAAAAA
103064840 GTGTTTAATG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
11 10 0.27
12 19 0.51
13 8 0.22
ACGTcount: A:0.72, C:0.07, G:0.06, T:0.15
Consensus pattern (12 bp):
AAAAAAAATTCA
Found at i:103064836 original size:23 final size:23
Alignment explanation
Indices: 103064784--103064839 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
103064774 GTTATACAAG
* *
103064784 TCAAAAAAAATTCGAAAAAAGAT
1 TCAAAAAAAATTCAAAAAAAAAT
103064807 TCAAAAAAAATTCAAAAAAAAAT
1 TCAAAAAAAATTCAAAAAAAAAT
*
103064830 CTGAAAAAAA
1 -TCAAAAAAA
103064840 GTGTTTAATG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 21 0.72
24 8 0.28
ACGTcount: A:0.70, C:0.09, G:0.05, T:0.16
Consensus pattern (23 bp):
TCAAAAAAAATTCAAAAAAAAAT
Found at i:103065800 original size:16 final size:16
Alignment explanation
Indices: 103065752--103065806 Score: 69
Period size: 16 Copynumber: 3.5 Consensus size: 16
103065742 AAGAGAAAAT
*
103065752 AAAGAAAATAAAAGAA
1 AAAGAAAATGAAAGAA
103065768 AAAGCAAAA-G-AAGAA
1 AAAG-AAAATGAAAGAA
*
103065783 AAAGAAAATGAAATAA
1 AAAGAAAATGAAAGAA
103065799 AAAGAAAA
1 AAAGAAAA
103065807 GAGAGGCAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
14 4 0.12
15 10 0.29
16 16 0.47
17 4 0.12
ACGTcount: A:0.78, C:0.02, G:0.15, T:0.05
Consensus pattern (16 bp):
AAAGAAAATGAAAGAA
Found at i:103065893 original size:7 final size:6
Alignment explanation
Indices: 103065871--103065907 Score: 56
Period size: 6 Copynumber: 6.0 Consensus size: 6
103065861 AAGGCCTTTG
*
103065871 AAAAGCA AAAAGA AAATGA AAAAGA AAAAGA AAAAGA
1 AAAAG-A AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA
103065908 GATTGAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
6 23 0.82
7 5 0.18
ACGTcount: A:0.78, C:0.03, G:0.16, T:0.03
Consensus pattern (6 bp):
AAAAGA
Found at i:103065915 original size:12 final size:12
Alignment explanation
Indices: 103065877--103065932 Score: 60
Period size: 12 Copynumber: 4.8 Consensus size: 12
103065867 TTTGAAAAGC
103065877 AAAAAGAAAATG
1 AAAAAGAAAATG
*
103065889 AAAAAGAAAAAG
1 AAAAAGAAAATG
* *
103065901 AAAAAGAGATTG
1 AAAAAGAAAATG
* *
103065913 AAAAAGAGAACG
1 AAAAAGAAAATG
103065925 -AAAAGAAA
1 AAAAAGAAA
103065933 TTTGAGAGTG
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
11 7 0.19
12 30 0.81
ACGTcount: A:0.73, C:0.02, G:0.20, T:0.05
Consensus pattern (12 bp):
AAAAAGAAAATG
Found at i:103065928 original size:30 final size:31
Alignment explanation
Indices: 103065894--103065964 Score: 76
Period size: 30 Copynumber: 2.4 Consensus size: 31
103065884 AAATGAAAAA
*
103065894 GAAAAAGAAA-AAGAGATTGAAAAAG-AGAAC
1 GAAAAAGAAATAAGAGAGTGAAAAAGAAG-AC
** *
103065924 G-AAAAGAAATTTGAGAGTGAAAAAGAAGAT
1 GAAAAAGAAATAAGAGAGTGAAAAAGAAGAC
103065954 GAAAAAGAAAT
1 GAAAAAGAAAT
103065965 TGAAACAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
29 8 0.24
30 15 0.44
31 11 0.32
ACGTcount: A:0.63, C:0.01, G:0.24, T:0.11
Consensus pattern (31 bp):
GAAAAAGAAATAAGAGAGTGAAAAAGAAGAC
Found at i:103065937 original size:24 final size:24
Alignment explanation
Indices: 103065871--103065934 Score: 76
Period size: 24 Copynumber: 2.7 Consensus size: 24
103065861 AAGGCCTTTG
*
103065871 AAAAGCAAAAAGAAAATGAAAAAGA
1 AAAAG-AAAAAGAAATTGAAAAAGA
*
103065896 AAAAGAAAAAGAGATTGAAAAAGA
1 AAAAGAAAAAGAAATTGAAAAAGA
* *
103065920 GAACG-AAAAGAAATT
1 AAAAGAAAAAGAAATT
103065935 TGAGAGTGAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
23 9 0.26
24 20 0.59
25 5 0.15
ACGTcount: A:0.70, C:0.03, G:0.19, T:0.08
Consensus pattern (24 bp):
AAAAGAAAAAGAAATTGAAAAAGA
Found at i:103068172 original size:30 final size:30
Alignment explanation
Indices: 103068075--103068173 Score: 87
Period size: 30 Copynumber: 3.3 Consensus size: 30
103068065 CGAGCTCACT
*
103068075 CTTAGCTC-ACTTTCAACTCACGAGCTAAA-
1 CTTAGCTCAACTTT-AGCTCACGAGCTAAAG
* * * **
103068104 CTTTAGCTCAACTTCAGCTTAGGAG-TTTAG
1 C-TTAGCTCAACTTTAGCTCACGAGCTAAAG
*
103068134 CCTCAGCTCAACTTTAGCTCACGAGCTAAAG
1 -CTTAGCTCAACTTTAGCTCACGAGCTAAAG
103068165 CTTAGCTCA
1 CTTAGCTCA
103068174 TTTTAGTTTA
Statistics
Matches: 52, Mismatches: 13, Indels: 9
0.70 0.18 0.12
Matches are distributed among these distances:
29 3 0.06
30 41 0.79
31 8 0.15
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.29
Consensus pattern (30 bp):
CTTAGCTCAACTTTAGCTCACGAGCTAAAG
Found at i:103074400 original size:40 final size:40
Alignment explanation
Indices: 103074338--103074584 Score: 190
Period size: 40 Copynumber: 6.2 Consensus size: 40
103074328 CGGATGATAA
*
103074338 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAAT-T
1 CCGGGCTAAGTCCCGAAG-GCATTTGAGCGAGT-GCTAATAT
* * ** *
103074378 CCGGGCTAAGTCCCAAAGGCATTCGTTCGAGCTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TGCTAATAT
* * *
103074418 CCGGGTTAAGTCCCGAAGGCGTTTGTGCGA--GCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGCTA--ATAT
* * * *
103074458 CCAGGCTAAGTCTCGAAGGCATTTGATCGAGT--TATTAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGCTAATAT
* * * *
103074496 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TGCTAATAT
*
103074537 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT-GCTAATAT
103074577 CC-GGCTAA
1 CCGGGCTAA
103074585 ACTCCGAAGG
Statistics
Matches: 164, Mismatches: 30, Indels: 27
0.74 0.14 0.12
Matches are distributed among these distances:
37 2 0.01
38 3 0.02
39 35 0.21
40 118 0.72
41 5 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGCTAATAT
Found at i:103074522 original size:79 final size:80
Alignment explanation
Indices: 103074381--103074562 Score: 240
Period size: 79 Copynumber: 2.3 Consensus size: 80
103074371 GCTAATTCCG
* * * * *
103074381 GGCTAAGTCCCAAAGGCATTCGTTCGAGCTACTATATCCGGGTTAAGTCCCGAAGGCGTTTGTGC
1 GGCTAAGTCCCGAAGGCATTTGATCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
* * *
103074446 GAGCTATTATATCCA
66 AAGCTACTATAACCA
* * *
103074461 GGCTAAGTCTCGAAGGCATTTGATCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTGATCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
* *
103074525 AAGTTACTATAACCG
66 AAGCTACTATAACCA
103074540 GGCTAAGTCCCGAAGGCATTTGA
1 GGCTAAGTCCCGAAGGCATTTGA
103074563 GCTAGTGGCT
Statistics
Matches: 88, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
79 58 0.66
80 30 0.34
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (80 bp):
GGCTAAGTCCCGAAGGCATTTGATCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
AAGCTACTATAACCA
Found at i:103074583 original size:79 final size:80
Alignment explanation
Indices: 103074381--103074584 Score: 225
Period size: 79 Copynumber: 2.6 Consensus size: 80
103074371 GCTAATTCCG
* * ** * *
103074381 GGCTAAGTCCCAAAGGCATTCGTTCGAGCT-ACTATATCCGGGTTAAGTCCCGAAGGCGTTTGTG
1 GGCTAAGTCCCGAAGGCATTTGAGCGAG-TGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
* * *
103074445 CGAGCTATTATATCCA
65 CAAGCTACTATAACCA
* * * *
103074461 GGCTAAGTCTCGAAGGCATTTGATCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTGAGCGAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
* *
103074525 AAGTTACTATAACCG
66 AAGCTACTATAACCA
* *
103074540 GGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 GGCTAAGTCCCGAAGGCATTTGAGCGAGTGACTATATCCGGGCTAA
103074585 ACTCCGAAGG
Statistics
Matches: 104, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 73 0.70
80 31 0.30
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (80 bp):
GGCTAAGTCCCGAAGGCATTTGAGCGAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
AAGCTACTATAACCA
Found at i:103075296 original size:45 final size:46
Alignment explanation
Indices: 103075231--103075318 Score: 160
Period size: 45 Copynumber: 1.9 Consensus size: 46
103075221 TCATAATTTG
*
103075231 TGCTATTTATGCTAAAAGGGCTAGTTGAATCATGGAAACTATGAAT
1 TGCTATATATGCTAAAAGGGCTAGTTGAATCATGGAAACTATGAAT
103075277 TGCTATATATGCT-AAAGGGCTAGTTGAATCATGGAAACTATG
1 TGCTATATATGCTAAAAGGGCTAGTTGAATCATGGAAACTATG
103075319 TAATAGGTAA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
45 29 0.71
46 12 0.29
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (46 bp):
TGCTATATATGCTAAAAGGGCTAGTTGAATCATGGAAACTATGAAT
Found at i:103082576 original size:40 final size:39
Alignment explanation
Indices: 103082514--103082760 Score: 215
Period size: 40 Copynumber: 6.2 Consensus size: 39
103082504 CGGATGATAA
*
103082514 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAAT-T
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGC-AGT-GCTAATAT
*
103082554 CCGGGCTAAGTCCCAAAGGCATTTGTGC-GTGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAGTGCTA--ATAT
* * *
103082594 CTGGGCTAAGTCCCGAAGGCGTTTGTGC-GAGCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAGTGCTA--ATAT
*
103082634 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT--TATTAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AGTGCTAATAT
** * *
103082672 ACCGGGCTAAGTCTTGAAGGCATTTGTGCAAGTTACT-ATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGC-AG-TGCTAATAT
*
103082713 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AGT-GCTAATAT
103082753 CC-GGCTAA
1 CCGGGCTAA
103082761 ACTCCAAAGG
Statistics
Matches: 174, Mismatches: 22, Indels: 23
0.79 0.10 0.11
Matches are distributed among these distances:
37 4 0.02
38 5 0.03
39 37 0.21
40 122 0.70
41 4 0.02
42 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAGTGCTAATAT
Found at i:103082718 original size:79 final size:80
Alignment explanation
Indices: 103082554--103082737 Score: 253
Period size: 79 Copynumber: 2.3 Consensus size: 80
103082544 GTGGCTAATT
* * * *
103082554 CCGGGCTAAGTCCCAAAGGCATTTGTGCGTGCTACTATATCTGGGCTAAGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
* * *
103082619 TGCGAGCTATTATAT
66 TGCAAGCTACTATAA
* * **
103082634 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCTTGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
103082698 TGCAAGTTACTATAA
66 TGCAAGCTACTATAA
103082713 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
103082738 AGCTAGTGGC
Statistics
Matches: 92, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
79 57 0.62
80 35 0.38
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCAAGCTACTATAA
Found at i:103082726 original size:119 final size:120
Alignment explanation
Indices: 103082514--103082737 Score: 290
Period size: 119 Copynumber: 1.9 Consensus size: 120
103082504 CGGATGATAA
* * *
103082514 CCGGGCTAAGTCCCGAGAGCATTTGAGCTAGTGGCTAATTCCGGGCTAAGTCCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAGAGCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCAAAGGCATTTG
** * * *
103082579 TGCGTGCTACTATATCTGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATAT
66 TGCAAGCTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAT
* * * ***
103082634 CCGGGCTAAGTCCCGA-AGGCATTTGTGCGAGT-TATTATACCGGGCTAAGTCTTGAAGGCATTT
1 CCGGGCTAAGTCCCGAGA-GCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCAAAGGCATTT
*
103082697 GTGCAAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
65 GTGCAAGCTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
103082738 AGCTAGTGGC
Statistics
Matches: 88, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
119 60 0.68
120 28 0.32
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAGAGCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCAAAGGCATTTG
TGCAAGCTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAT
Found at i:103082759 original size:79 final size:78
Alignment explanation
Indices: 103082554--103082760 Score: 229
Period size: 79 Copynumber: 2.6 Consensus size: 78
103082544 GTGGCTAATT
* * *
103082554 CCGGGCTAAGTCCCAAAGGCATTTGTGC-GTGCTACTATATCTGGGCTAAGTCCCGAAGGCGTTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAGTG--ACTATATC-CGGCTAAGTCCCGAAGGCATTT
* * *
103082618 GTGCGAGCTATTATAT
63 GTGCAAGCTACTATAA
* * **
103082634 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCTTGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AGTGACTATATCC-GGCTAAGTCCCGAAGGCATTTG
*
103082698 TGCAAGTTACTATAA
64 TGCAAGCTACTATAA
* *
103082713 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGCTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AGTGACTATATCCGGCTAA
103082761 ACTCCAAAGG
Statistics
Matches: 107, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
79 71 0.66
80 34 0.32
82 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAGTGACTATATCCGGCTAAGTCCCGAAGGCATTTGTG
CAAGCTACTATAA
Found at i:103083177 original size:47 final size:47
Alignment explanation
Indices: 103083102--103083194 Score: 150
Period size: 47 Copynumber: 2.0 Consensus size: 47
103083092 TGATTCTCTA
* *
103083102 TTTTATAGATTTTGGGTTCATCAACTATCGGACTCGGGCTTGTTGAG
1 TTTTATAGATTTTGGGTTCATCAACTATCGGACTCGAGATTGTTGAG
* *
103083149 TTTTATAGATTTTGGGTTCGTCAGCTATCGGACTCGAGATTGTTGA
1 TTTTATAGATTTTGGGTTCATCAACTATCGGACTCGAGATTGTTGA
103083195 AGTCGAAGTC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.19, C:0.14, G:0.26, T:0.41
Consensus pattern (47 bp):
TTTTATAGATTTTGGGTTCATCAACTATCGGACTCGAGATTGTTGAG
Found at i:103085359 original size:21 final size:20
Alignment explanation
Indices: 103085322--103085360 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
103085312 TAAACTCCCA
* *
103085322 AAAATTTTTACTTTTCCCTC
1 AAAACTTTTACTATTCCCTC
103085342 AAAACTTTTACTCATTCCC
1 AAAACTTTTACT-ATTCCC
103085361 ATTTTCCCAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.28, C:0.28, G:0.00, T:0.44
Consensus pattern (20 bp):
AAAACTTTTACTATTCCCTC
Found at i:103090952 original size:6 final size:6
Alignment explanation
Indices: 103090929--103091003 Score: 51
Period size: 6 Copynumber: 11.8 Consensus size: 6
103090919 GATTTCGATC
* * ** * **
103090929 TCTTTT TCCTTC TCTTTT TCTTTT TCACTT TCCTTT TCAATT TCATTTT
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TC-TTTT
103090978 TCTTTT TCTTATT CTCTTTT TACTTT
1 TCTTTT TCTT-TT -TCTTTT T-CTTT
103091004 CTTTCACACT
Statistics
Matches: 53, Mismatches: 12, Indels: 7
0.74 0.17 0.10
Matches are distributed among these distances:
6 37 0.70
7 12 0.23
8 4 0.08
ACGTcount: A:0.08, C:0.23, G:0.00, T:0.69
Consensus pattern (6 bp):
TCTTTT
Found at i:103093162 original size:21 final size:23
Alignment explanation
Indices: 103093111--103093155 Score: 69
Period size: 21 Copynumber: 2.1 Consensus size: 23
103093101 CATACGATGT
103093111 ATTAA-GCCATGCATGTACATGC
1 ATTAATGCCATGCATGTACATGC
103093133 ATTAATGCCATGC-T-TACATGC
1 ATTAATGCCATGCATGTACATGC
103093154 AT
1 AT
103093156 GTGTGCCGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 9 0.41
22 6 0.27
23 7 0.32
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (23 bp):
ATTAATGCCATGCATGTACATGC
Found at i:103094934 original size:37 final size:37
Alignment explanation
Indices: 103094884--103094962 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
103094874 TTATTACGAA
* * *
103094884 GTCTTACCCGGACATAATCTTCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCTCACACGAAGTCATCGG
*
103094921 GTCTTACCCGGACAAAATCCTCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCTCACACGAAGTCATCGG
103094958 GTCTT
1 GTCTT
103094963 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCTCACACGAAGTCATCGG
Found at i:103095207 original size:47 final size:47
Alignment explanation
Indices: 103095081--103095227 Score: 195
Period size: 47 Copynumber: 3.1 Consensus size: 47
103095071 CCCTTCGGGA
* * * *
103095081 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
103095128 CCTGTCACATATATATACACTTCCACATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
103095177 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
103095224 CTTA
1 CTTA
103095228 CTATCATTTC
Statistics
Matches: 85, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
47 46 0.54
49 39 0.46
ACGTcount: A:0.27, C:0.32, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:103098468 original size:27 final size:27
Alignment explanation
Indices: 103098397--103098469 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
103098387 TTTCACCCTA
* * *
103098397 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTCTACAAAC
103098424 CAAGGGTATTTCGGTAATTCTACAAAC
1 CAAGGGTATTTCGGTAATTCTACAAAC
* * *
103098451 CGATGGTATTTCTGTAATT
1 CAAGGGTATTTCGGTAATT
103098470 TTTGAAAGTC
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTCTACAAAC
Found at i:103098576 original size:27 final size:27
Alignment explanation
Indices: 103098455--103098587 Score: 153
Period size: 27 Copynumber: 4.9 Consensus size: 27
103098445 ACAAACCGAT
*
103098455 GGTATTTCTGTAATTTT-TGAAAGTCAAG
1 GGTATTTCTGTAATTTTAT-AAA-TCAGG
* * *
103098483 GGTATTTCTATAATTTTTTAAATTAGG
1 GGTATTTCTGTAATTTTATAAATCAGG
*
103098510 GGTATTTCTATAATTTTATAAATCAGG
1 GGTATTTCTGTAATTTTATAAATCAGG
*
103098537 GGTATTTCTGTAATTTTCTAAATCAGG
1 GGTATTTCTGTAATTTTATAAATCAGG
* *
103098564 GTTATTT-TGGTAATTTTAGAAATC
1 GGTATTTCT-GTAATTTTATAAATC
103098588 GAAGGTATTT
Statistics
Matches: 93, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
26 1 0.01
27 72 0.77
28 19 0.20
29 1 0.01
ACGTcount: A:0.29, C:0.07, G:0.17, T:0.47
Consensus pattern (27 bp):
GGTATTTCTGTAATTTTATAAATCAGG
Found at i:103098652 original size:27 final size:27
Alignment explanation
Indices: 103098601--103098686 Score: 84
Period size: 27 Copynumber: 3.2 Consensus size: 27
103098591 GGTATTTCAA
* **
103098601 TACAAGTTGAGGGTATTTTTGTAATTT
1 TACAAGTCGAGGGTATTTTAATAATTT
*
103098628 TACAAGTCGAGGGTATTTCAATAATTT
1 TACAAGTCGAGGGTATTTTAATAATTT
* * * *
103098655 CACAAATC-AGGGGTATTTTGACAATTT
1 TACAAGTCGA-GGGTATTTTAATAATTT
103098682 TACAA
1 TACAA
103098687 CCTAGGGGTA
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
26 1 0.02
27 47 0.98
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (27 bp):
TACAAGTCGAGGGTATTTTAATAATTT
Found at i:103098707 original size:27 final size:26
Alignment explanation
Indices: 103098611--103098708 Score: 81
Period size: 27 Copynumber: 3.7 Consensus size: 26
103098601 TACAAGTTGA
* *
103098611 GGGTATTTTTG-TAATTTTACAAGTCG
1 GGGTA-TTTTGATAATTTTACAAATAG
** *
103098637 AGGGTATTTCAATAATTTCACAAATCAG
1 -GGGTATTTTGATAATTTTACAAAT-AG
* *
103098665 GGGTATTTTGACAATTTTACAACCTAG
1 GGGTATTTTGATAATTTTACAA-ATAG
*
103098692 GGGTATTTTGGTAATTT
1 GGGTATTTTGATAATTT
103098709 GCAACCCAAT
Statistics
Matches: 56, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
26 3 0.05
27 51 0.91
28 2 0.04
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (26 bp):
GGGTATTTTGATAATTTTACAAATAG
Found at i:103098754 original size:27 final size:27
Alignment explanation
Indices: 103098722--103098797 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
103098712 ACCCAATGAT
* *
103098722 ATTTCAGTAATTCTATCCTACATGGGC
1 ATTTCAGTAATTCTACCCTACAAGGGC
*
103098749 ATTTCAGTAATTCTACCCTACAAGGGT
1 ATTTCAGTAATTCTACCCTACAAGGGC
* *
103098776 ATTTCAGTAATACTAGCCTACA
1 ATTTCAGTAATTCTACCCTACA
103098798 GATATGAGAT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.34
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTACAAGGGC
Found at i:103108300 original size:30 final size:30
Alignment explanation
Indices: 103108266--103108322 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
103108256 AAGAATCGTA
*
103108266 AGCTTTGGCACTAAGTGTGGGATTTAAAGT
1 AGCTTTGGCACTAAGTGTGCGATTTAAAGT
103108296 AGCTTTGGCACTAAGTGTGCGATTTAA
1 AGCTTTGGCACTAAGTGTGCGATTTAA
103108323 CTAGTTTCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (30 bp):
AGCTTTGGCACTAAGTGTGCGATTTAAAGT
Found at i:103113739 original size:27 final size:27
Alignment explanation
Indices: 103113687--103113739 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
103113677 GACCCTAGTT
*
103113687 TGTAAAATCACCGAAATACACTTGTAA
1 TGTAAAATCACCGAAATACACCTGTAA
* * *
103113714 TGTAAAATGACCGTAATACCCCTGTA
1 TGTAAAATCACCGAAATACACCTGTA
103113740 TGGTAGAATG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.40, C:0.21, G:0.13, T:0.26
Consensus pattern (27 bp):
TGTAAAATCACCGAAATACACCTGTAA
Found at i:103114209 original size:28 final size:28
Alignment explanation
Indices: 103114166--103114231 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 28
103114156 GCATTTGATA
* *
103114166 CTGATTCT-ATATTGGGCTTAGGCCCAC
1 CTGATTCTGTTATTGGGCTAAGGCCCAC
*
103114193 TTGATTCTGTTATTGGGCTAAGGCCCAC
1 CTGATTCTGTTATTGGGCTAAGGCCCAC
*
103114221 CTGATACTGTT
1 CTGATTCTGTT
103114232 TCGTGATGGG
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
27 7 0.21
28 26 0.79
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (28 bp):
CTGATTCTGTTATTGGGCTAAGGCCCAC
Found at i:103123930 original size:22 final size:22
Alignment explanation
Indices: 103123902--103123945 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
103123892 TTGTTTTTTC
*
103123902 GGAAGAGCTTCTTGGATTACCT
1 GGAAGAGCTTCCTGGATTACCT
103123924 GGAAGAGCTTCCTGGATTACCT
1 GGAAGAGCTTCCTGGATTACCT
103123946 CTGAATCAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (22 bp):
GGAAGAGCTTCCTGGATTACCT
Found at i:103128353 original size:11 final size:11
Alignment explanation
Indices: 103128337--103128393 Score: 68
Period size: 11 Copynumber: 5.5 Consensus size: 11
103128327 AGGGCCTCGA
103128337 TGGGCCAAAAC
1 TGGGCCAAAAC
*
103128348 TGGGCC-CAA-
1 TGGGCCAAAAC
103128357 TGGGCCAAAAC
1 TGGGCCAAAAC
*
103128368 TGGGCC-CAA-
1 TGGGCCAAAAC
103128377 TGGGCCAAAAC
1 TGGGCCAAAAC
103128388 TGGGCC
1 TGGGCC
103128394 CAATGGGCTT
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 12 0.32
10 8 0.21
11 18 0.47
ACGTcount: A:0.28, C:0.30, G:0.32, T:0.11
Consensus pattern (11 bp):
TGGGCCAAAAC
Found at i:103128361 original size:20 final size:20
Alignment explanation
Indices: 103128336--103128401 Score: 132
Period size: 20 Copynumber: 3.3 Consensus size: 20
103128326 GAGGGCCTCG
103128336 ATGGGCCAAAACTGGGCCCA
1 ATGGGCCAAAACTGGGCCCA
103128356 ATGGGCCAAAACTGGGCCCA
1 ATGGGCCAAAACTGGGCCCA
103128376 ATGGGCCAAAACTGGGCCCA
1 ATGGGCCAAAACTGGGCCCA
103128396 ATGGGC
1 ATGGGC
103128402 TTACGGACCA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.29, C:0.29, G:0.32, T:0.11
Consensus pattern (20 bp):
ATGGGCCAAAACTGGGCCCA
Found at i:103128362 original size:9 final size:9
Alignment explanation
Indices: 103128348--103128401 Score: 54
Period size: 9 Copynumber: 5.6 Consensus size: 9
103128338 GGGCCAAAAC
103128348 TGGGCCCAA
1 TGGGCCCAA
*
103128357 TGGGCCAAAA
1 TGGGCC-CAA
103128367 CTGGGCCCAA
1 -TGGGCCCAA
*
103128377 TGGGCCAAAA
1 TGGGCC-CAA
103128387 CTGGGCCCAA
1 -TGGGCCCAA
103128397 TGGGC
1 TGGGC
103128402 TTACGGACCA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 17 0.46
10 8 0.22
11 12 0.32
ACGTcount: A:0.26, C:0.30, G:0.33, T:0.11
Consensus pattern (9 bp):
TGGGCCCAA
Found at i:103133852 original size:40 final size:39
Alignment explanation
Indices: 103133770--103133971 Score: 192
Period size: 40 Copynumber: 5.1 Consensus size: 39
103133760 GAATGATGTT
* * * *
103133770 CGGGCTAAGTCCCGCAGGC-TTTGTGCTAAGTGACTATATC
1 CGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAATC
* *
103133810 CGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTC
1 CGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAATC
* *
103133850 CGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATC
1 CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATC
* **
103133889 CGGGTTAAGTCCCGAAGGCATTTGTGATAGTTACTATAA-C
1 CGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AATC
* ** * *
103133929 CGGGCTATGTCCCGAAGGCATTTGAACGAGTTGCTATATC
1 CGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAATC
103133969 CGG
1 CGG
103133972 TTAAATTCCG
Statistics
Matches: 134, Mismatches: 23, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
39 36 0.27
40 88 0.66
41 10 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATC
Found at i:103133912 original size:79 final size:79
Alignment explanation
Indices: 103133821--103133985 Score: 199
Period size: 79 Copynumber: 2.1 Consensus size: 79
103133811 GGACTAAGAT
* * **
103133821 CCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACT
1 CCGAAGGCATTTGTGAGAGTTACTATA-ACCGGGCTAAGTCCCGAAGGCATTGGAACGAGTTACT
*
103133884 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
* * * *
103133900 CCGAAGGCATTTGTGATAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGTTGCTA
1 CCGAAGGCATTTGTGAGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTGGAACGAGTTACTA
* *
103133965 TATCCGGTTAAATT
66 AATCCGGTTAAATC
103133979 CCGAAGG
1 CCGAAGG
103133986 TACGTGATTC
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
79 46 0.63
80 27 0.37
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGAGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTGGAACGAGTTACTA
AATCCGGTTAAATC
Found at i:103141930 original size:40 final size:40
Alignment explanation
Indices: 103141846--103142030 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
103141836 TCGAATGATG
* *
103141846 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
103141885 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
103141926 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
103141965 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
103142004 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
103142031 AACGAGTTGC
Statistics
Matches: 127, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
39 36 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:103141982 original size:79 final size:81
Alignment explanation
Indices: 103141846--103142028 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
103141836 TCGAATGATG
* *
103141846 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
103141910 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
103141925 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
103141987 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
103142005 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
103142029 TGAACGAGTT
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 60 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:103142052 original size:79 final size:79
Alignment explanation
Indices: 103141899--103142063 Score: 208
Period size: 79 Copynumber: 2.1 Consensus size: 79
103141889 GGACTAAGAT
* **
103141899 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
103141964 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
103141978 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGTTGCT
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTACT
* * *
103142042 ATAT-CTGGTTAAATT
64 AAATCCGGGTTAAATC
103142057 CCGAAGG
1 CCGAAGG
103142064 AACGTGATTC
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:103153583 original size:46 final size:46
Alignment explanation
Indices: 103153495--103153616 Score: 158
Period size: 46 Copynumber: 2.6 Consensus size: 46
103153485 ATTTCATGTT
* *
103153495 GATGCCATGTCCCAGACATGGTCTTACAGTGACTATCATCTCATA-GTC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGACTATCATCTCA-AGGCC
* *
103153543 GATGCATGTCCCAGACATGTCTTACACTGGCT-TACGTCTCAAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGACTAT-CATCTCAAGGCC
103153589 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
103153617 AGAACTCATC
Statistics
Matches: 68, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
45 2 0.03
46 48 0.71
47 14 0.21
48 4 0.06
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGACTATCATCTCAAGGCC
Found at i:103153639 original size:46 final size:45
Alignment explanation
Indices: 103153488--103153647 Score: 157
Period size: 46 Copynumber: 3.5 Consensus size: 45
103153478 AGCTCATATT
* *
103153488 TCATGTTGATGCCATGTCCCAGACATGGTCTTACAGTGACTATCATC
1 TCATGTCGATGCCATGTCCCAGACAT-GTCTTACACTGACT-TCATC
* *
103153535 TCATAGTCGATG-CATGTCCCAGACATGTCTTACACTGGCTTACGTC
1 TCAT-GTCGATGCCATGTCCCAGACATGTCTTACACTGACTT-CATC
* *
103153581 TCAAGGCCGATG-CATGTCCCAGACATGTCTTACACTAGAAC-TCATC
1 TC-ATGTCGATGCCATGTCCCAGACATGTCTTACACT-G-ACTTCATC
*
103153627 TCGATGTTGATGCCAT-TCCCA
1 TC-ATGTCGATGCCATGTCCCA
103153648 ACCATGGTCA
Statistics
Matches: 95, Mismatches: 12, Indels: 13
0.79 0.10 0.11
Matches are distributed among these distances:
45 1 0.01
46 63 0.66
47 24 0.25
48 7 0.07
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (45 bp):
TCATGTCGATGCCATGTCCCAGACATGTCTTACACTGACTTCATC
Found at i:103161174 original size:47 final size:46
Alignment explanation
Indices: 103161123--103161287 Score: 131
Period size: 47 Copynumber: 3.5 Consensus size: 46
103161113 ATGTCGATGC
*
103161123 CATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAGCCTATG
1 CATGTCCCAGACAT-GTCTTACACTGACTATCATATCGTAGCCTATG
* * * * * * *
103161170 CATGTCCCAGGCATCTCTTATACTAAC-ACTCGTTTCG-ATGCCAATG
1 CATGTCCCAGACATGTCTTACACTGACTA-TCATATCGTA-GCCTATG
* * *
103161216 CCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GT-GGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTGACTATCAT-ATCGTAGCCT-ATG
*
103161264 CATGTCCCGGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
103161288 AGCCCATAAT
Statistics
Matches: 92, Mismatches: 18, Indels: 17
0.72 0.14 0.13
Matches are distributed among these distances:
45 2 0.02
46 32 0.35
47 41 0.45
48 16 0.17
49 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.18, T:0.30
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGACTATCATATCGTAGCCTATG
Found at i:103166093 original size:29 final size:29
Alignment explanation
Indices: 103166059--103166132 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
103166049 TAATCAACCG
*
103166059 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
103166088 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
103166117 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
103166133 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:103173117 original size:44 final size:42
Alignment explanation
Indices: 103173050--103173231 Score: 179
Period size: 42 Copynumber: 4.3 Consensus size: 42
103173040 ATCTCAGATA
* * * *
103173050 TCGTGTAAGACCGTGTCTAGGACA-CAGGCCTCA-ATTTGAGATT
1 TCGTGTAAGACCATGTCTGGGACATCA-GCATCATATCT-A-ATT
103173093 TACGTGTAAGACCATGTCTGGGACATCAGCATCATATCTAATT
1 T-CGTGTAAGACCATGTCTGGGACATCAGCATCATATCTAATT
* ** * ** *
103173136 TCATGTAAGACCATGTCTGGGACATTGGCATCGTATCCGATG
1 TCGTGTAAGACCATGTCTGGGACATCAGCATCATATCTAATT
* * *
103173178 TCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTTATT
1 TCGTGTAAGACCATGTCTGGGACATCAGCATCATATCTAATT
*
103173220 TCGTGGAAGACC
1 TCGTGTAAGACC
103173232 CCGTTTGGGA
Statistics
Matches: 119, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
42 82 0.69
43 5 0.04
44 27 0.23
45 5 0.04
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.29
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACATCAGCATCATATCTAATT
Found at i:103173149 original size:42 final size:42
Alignment explanation
Indices: 103173097--103173275 Score: 164
Period size: 42 Copynumber: 4.2 Consensus size: 42
103173087 GAGATTTACG
103173097 TGTAAGACCATGTCTGGGACATCAGCATCATATCTAATTTCA
1 TGTAAGACCATGTCTGGGACATCAGCATCATATCTAATTTCA
** * ** * *
103173139 TGTAAGACCATGTCTGGGACATTGGCATCGTATCCGATGTCG
1 TGTAAGACCATGTCTGGGACATCAGCATCATATCTAATTTCA
* * * *
103173181 TGTAAGACCATGTCTGGGACATCGGCATCGTATCTTATTTCG
1 TGTAAGACCATGTCTGGGACATCAGCATCATATCTAATTTCA
* ** * * *
103173223 TGGAAGACCCCGTTTGGGACA-GAGGCATCGATA-CTAAATTACA
1 TGTAAGACCATGTCTGGGACATCA-GCATC-ATATCT-AATTTCA
103173266 TGTAAGACCA
1 TGTAAGACCA
103173276 CGTCCAAGAC
Statistics
Matches: 111, Mismatches: 23, Indels: 5
0.80 0.17 0.04
Matches are distributed among these distances:
42 97 0.87
43 14 0.13
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATCAGCATCATATCTAATTTCA
Found at i:103173241 original size:84 final size:84
Alignment explanation
Indices: 103173095--103173252 Score: 226
Period size: 84 Copynumber: 1.9 Consensus size: 84
103173085 TTGAGATTTA
* *
103173095 CGTGTAAGACCATGTCTGGGACATCAGCATCATATCTAATTTCATGTAAGACCATGTCTGGGACA
1 CGTGTAAGACCATGTCTGGGACATCAGCATCATATCTAATTTCATGGAAGACCACGTCTGGGACA
**
103173160 TTGGCATCGTATCCGATGT
66 GAGGCATCGTATCCGATGT
* * * * * *
103173179 CGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTTATTTCGTGGAAGACCCCGTTTGGGACA
1 CGTGTAAGACCATGTCTGGGACATCAGCATCATATCTAATTTCATGGAAGACCACGTCTGGGACA
103173244 GAGGCATCG
66 GAGGCATCG
103173253 ATACTAAATT
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
84 64 1.00
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (84 bp):
CGTGTAAGACCATGTCTGGGACATCAGCATCATATCTAATTTCATGGAAGACCACGTCTGGGACA
GAGGCATCGTATCCGATGT
Found at i:103177443 original size:40 final size:40
Alignment explanation
Indices: 103177371--103177471 Score: 109
Period size: 40 Copynumber: 2.5 Consensus size: 40
103177361 CCAAGCCAAG
* * *
103177371 TACCTTCGGGATTTAA-CCGGATATGGCTACTCGCTA-GAA
1 TACCTTCGGGACTTAACCCGGATATAGCTACTCGC-ACAAA
*
103177410 TACCTTCGGGACATAACCCGGATATAG-TAACTCGCACAAA
1 TACCTTCGGGACTTAACCCGGATATAGCT-ACTCGCACAAA
* *
103177450 TGCCTTCGGGACTTAGCCCGGA
1 TACCTTCGGGACTTAACCCGGA
103177472 ACTAGTCACT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
39 16 0.31
40 36 0.69
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
TACCTTCGGGACTTAACCCGGATATAGCTACTCGCACAAA
Found at i:103185341 original size:39 final size:39
Alignment explanation
Indices: 103185258--103185353 Score: 106
Period size: 39 Copynumber: 2.5 Consensus size: 39
103185248 TGAAACCAAT
*
103185258 TACCAGCAC-AAGCCTGCGGGAATTTAAACCCGGTATAA
1 TACCAGCACGAAGCCTGCGGGAATTTAAACCCGGCATAA
* * * *
103185296 TACCAGCTCGAAGCCTGCGGGACTTT-AGCCCGGACATAT
1 TACCAGCACGAAGCCTGCGGGAATTTAAACCCGG-CATAA
* *
103185335 TTCCAGCACGTAGCCTGCG
1 TACCAGCACGAAGCCTGCG
103185354 AACCTTAAGT
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
38 14 0.29
39 34 0.71
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.20
Consensus pattern (39 bp):
TACCAGCACGAAGCCTGCGGGAATTTAAACCCGGCATAA
Found at i:103185382 original size:39 final size:39
Alignment explanation
Indices: 103185335--103185448 Score: 149
Period size: 39 Copynumber: 2.9 Consensus size: 39
103185325 CCGGACATAT
* * *
103185335 TTCCAGCACGTAGCCTGCGAACCTTAAGTCCGGTTATAA
1 TTCCAGCACATAGCCTGCGAACCTTAAGTCCAGATATAA
* *
103185374 TTCTAGCACATAGCCTGC-AGACCTTAAGTCTAGATATAA
1 TTCCAGCACATAGCCTGCGA-ACCTTAAGTCCAGATATAA
* *
103185413 TTCCAGCACATAGCCTGCGGACCCTAAGTCCAGATA
1 TTCCAGCACATAGCCTGCGAACCTTAAGTCCAGATA
103185449 AACATCACTG
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.02
39 63 0.98
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGAACCTTAAGTCCAGATATAA
Found at i:103191532 original size:40 final size:40
Alignment explanation
Indices: 103191488--103191719 Score: 249
Period size: 40 Copynumber: 5.8 Consensus size: 40
103191478 GGATATAGCT
* *
103191488 ACTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTATAGTA
1 ACTCGTACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
103191528 ACTCGTATAAATGCCTTCGGGACTTAACCCGGATTTAGTA
1 ACTCGTACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
103191568 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATTTAGTA
1 ACTCGTACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
103191608 ACTCGTACAAATGCCTTCAGG-CTTAGCCCGGAATTAGTA
1 ACTCGTACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * * * *
103191647 TCTCGCACAAATGCCTT-GGGATCTTAGTCCGGATATGGTC
1 ACTCGTACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
103191687 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGTACAAATGCCTTCGGGACTTAGCCCGGA
103191720 CATCATTCAA
Statistics
Matches: 163, Mismatches: 22, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.01
39 34 0.21
40 111 0.68
41 16 0.10
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.27
Consensus pattern (40 bp):
ACTCGTACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:103191669 original size:79 final size:81
Alignment explanation
Indices: 103191495--103191719 Score: 264
Period size: 79 Copynumber: 2.8 Consensus size: 81
103191485 GCTACTCGTT
* * * *
103191495 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGTATAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTT-GGGATCTTAGTCCGGATTATAGTAACTCGTACAAATGCCTTCAGGACTTAACCC
*
103191558 GGATTTAGTAACTCGCA
65 GGAATTAGTAACTCGCA
* *
103191575 CAAATGCCTTCGGATCTTAGTCCGGATT-TAGTAACTCGTACAAATGCCTTCAGG-CTTAGCCCG
1 CAAATGCCTTGGGATCTTAGTCCGGATTATAGTAACTCGTACAAATGCCTTCAGGACTTAACCCG
*
103191638 GAATTAGTATCTCGCA
66 GAATTAGTAACTCGCA
* * * * * *
103191654 CAAATGCCTTGGGATCTTAGTCCGGA-TATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTGGGATCTTAGTCCGGATTATAGTAAC-TCGTACAAATGCCTTCAGGACTTAACCC
103191717 GGA
65 GGA
103191720 CATCATTCAA
Statistics
Matches: 126, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 63 0.50
80 60 0.48
81 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (81 bp):
CAAATGCCTTGGGATCTTAGTCCGGATTATAGTAACTCGTACAAATGCCTTCAGGACTTAACCCG
GAATTAGTAACTCGCA
Found at i:103198881 original size:40 final size:40
Alignment explanation
Indices: 103198776--103198918 Score: 150
Period size: 40 Copynumber: 3.5 Consensus size: 40
103198766 GCTACTCGTT
*
103198776 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATTATAGTAACTCGCA
* *
103198816 CAAATGCCATTGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCC-TTCGGACTTAGCCCGGATTATAGTAACTCGCA
* * * *
103198856 CAAATGCCTTCGGATCTTAGTCCGGA-TATGGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTATAGTAAC-TCGCA
103198897 CAAA-GCCTTCAGGACTTAGCCC
1 CAAATGCCTTC-GGACTTAGCCC
103198919 AGACATCATT
Statistics
Matches: 87, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
39 6 0.07
40 66 0.76
41 15 0.17
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGACTTAGCCCGGATTATAGTAACTCGCA
Found at i:103204929 original size:16 final size:16
Alignment explanation
Indices: 103204908--103204939 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
103204898 GTTGTAACGC
103204908 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
*
103204924 CCCAAAAGTCCCGAAA
1 CCCAAAAATCCCGAAA
103204940 TATTGAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.38, G:0.09, T:0.06
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:103207159 original size:39 final size:40
Alignment explanation
Indices: 103207059--103207243 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
103207049 TCGAATGATG
* * *
103207059 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
103207098 ATCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
103207139 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
103207178 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
103207217 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
103207244 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.29
40 77 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:103207265 original size:79 final size:79
Alignment explanation
Indices: 103207112--103207276 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
103207102 GGACTAAGAT
* **
103207112 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
103207177 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
103207191 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
103207254 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
103207270 CCGAAGG
1 CCGAAGG
103207277 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:103209841 original size:29 final size:28
Alignment explanation
Indices: 103209786--103209899 Score: 106
Period size: 28 Copynumber: 4.0 Consensus size: 28
103209776 GTGAGCATGA
* * *
103209786 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
103209814 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* *
103209843 ATATACAA-GTGGTTTAGGCC-AATGGGCC
1 ATATA-AATGT-GATTGGGCCTAATGGGCC
* * **
103209871 ATATGAATATGATTGGGTTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
103209899 A
1 A
103209900 AATACAGGTA
Statistics
Matches: 70, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
27 7 0.10
28 33 0.47
29 27 0.39
30 3 0.04
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:103221210 original size:29 final size:30
Alignment explanation
Indices: 103221153--103221210 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
103221143 CTTTTGAAAA
*** *
103221153 TATTTACAAAAAGAGGCATGTAATTTTTAT
1 TATTTACAAAAAGAGGCAACCAAATTTTAT
103221183 TATTTACAAAAAGA-GCAACCAAATTTTA
1 TATTTACAAAAAGAGGCAACCAAATTTTA
103221211 AAAATAGTTC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 10 0.42
30 14 0.58
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.34
Consensus pattern (30 bp):
TATTTACAAAAAGAGGCAACCAAATTTTAT
Found at i:103229096 original size:51 final size:51
Alignment explanation
Indices: 103229029--103229131 Score: 188
Period size: 51 Copynumber: 2.0 Consensus size: 51
103229019 TTTCGGATAA
* *
103229029 GGGAAAGAGAATGTAGCTTAATAGTCGATTCGTGATAATTCGATAACATCC
1 GGGAAAGAGAAAGTAGCTGAATAGTCGATTCGTGATAATTCGATAACATCC
103229080 GGGAAAGAGAAAGTAGCTGAATAGTCGATTCGTGATAATTCGATAACATCC
1 GGGAAAGAGAAAGTAGCTGAATAGTCGATTCGTGATAATTCGATAACATCC
103229131 G
1 G
103229132 AGGTAAGTTT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (51 bp):
GGGAAAGAGAAAGTAGCTGAATAGTCGATTCGTGATAATTCGATAACATCC
Found at i:103230060 original size:47 final size:47
Alignment explanation
Indices: 103229960--103231103 Score: 1946
Period size: 47 Copynumber: 23.9 Consensus size: 47
103229950 TAGTATGGCA
* *
103229960 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCC
1 TAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
103230009 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
103230056 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
103230103 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
103230150 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
103230197 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
103230244 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
103230291 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
103230338 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
103230385 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
103230432 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
103230479 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
103230526 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
103230573 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
103230620 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
103230667 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
103230714 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
103230761 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
103230808 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
103230855 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATGAGGCC
1 TAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
* *
103230904 TAATAGCCAAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATAGCC----G----AT-G-TGATG-AA----TGTGAAAGTGTATATATGTGATAAGGCC
*
103230966 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * *
103231013 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * * *
103231060 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
103231104 TCCCGAAGGG
Statistics
Matches: 1057, Mismatches: 21, Indels: 36
0.95 0.02 0.03
Matches are distributed among these distances:
47 952 0.90
49 53 0.05
51 1 0.00
52 4 0.00
53 2 0.00
54 2 0.00
57 2 0.00
58 2 0.00
59 4 0.00
60 1 0.00
62 24 0.02
64 10 0.01
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:103230920 original size:64 final size:62
Alignment explanation
Indices: 103230849--103230969 Score: 215
Period size: 64 Copynumber: 1.9 Consensus size: 62
103230839 TATATGTGAT
*
103230849 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATGAGGCCTAATAGCCA
1 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCA
103230913 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
1 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
103230970 GGCCGATGTG
Statistics
Matches: 56, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
62 21 0.38
64 35 0.62
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.27
Consensus pattern (62 bp):
AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCA
Found at i:103230931 original size:111 final size:109
Alignment explanation
Indices: 103230802--103231016 Score: 394
Period size: 111 Copynumber: 2.0 Consensus size: 109
103230792 TATATGTGAT
103230802 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
1 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
*
103230867 TGATGAATGTGAAAGTGTATATATATGTGATGAGGCCTAATAGCCA
66 TGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCA
*
103230913 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
1 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
103230978 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
103231017 GGCCGATGTG
Statistics
Matches: 102, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
109 21 0.21
111 81 0.79
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.28
Consensus pattern (109 bp):
AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCA
Found at i:103230934 original size:158 final size:158
Alignment explanation
Indices: 103230755--103231048 Score: 570
Period size: 158 Copynumber: 1.9 Consensus size: 158
103230745 TATATGTGAT
103230755 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
1 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
103230820 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
66 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
103230885 ATATATATGTGATGAGGCCTAATAGCCA
131 ATATATATGTGATGAGGCCTAATAGCCA
* *
103230913 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
1 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
103230978 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
66 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
103231043 ATATAT
131 ATATAT
103231049 GTGACAGGGC
Statistics
Matches: 134, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
158 134 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.29
Consensus pattern (158 bp):
AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
ATATATATGTGATGAGGCCTAATAGCCA
Found at i:103230939 original size:205 final size:203
Alignment explanation
Indices: 103230708--103231100 Score: 678
Period size: 205 Copynumber: 1.9 Consensus size: 203
103230698 TATATGTGAT
103230708 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
1 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
103230773 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
66 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
* * * *
103230838 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATGAGGC
131 ATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATA-A-ATGTGATGAGGC
103230903 CTAATAGCCA
194 CTAATAGCCA
* *
103230913 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
1 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
*
103230978 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
66 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
* * *
103231043 ATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGAT
131 ATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATAAATGTGAT
103231101 AAGTCCCGAA
Statistics
Matches: 178, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
203 7 0.04
204 1 0.01
205 170 0.96
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (203 bp):
AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
ATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATAAATGTGATGAGGCCT
AATAGCCA
Found at i:103232604 original size:29 final size:29
Alignment explanation
Indices: 103232569--103232642 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
103232559 GTTGTGAGAT
* *
103232569 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
103232598 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
103232627 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
103232643 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:103233078 original size:40 final size:40
Alignment explanation
Indices: 103233034--103233270 Score: 330
Period size: 40 Copynumber: 5.9 Consensus size: 40
103233024 GAGTTACTAA
*
103233034 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
103233074 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
103233114 ATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
103233154 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* ** * * * *
103233194 ATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
103233234 GTCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
103233271 CGTGTATTCG
Statistics
Matches: 179, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 179 1.00
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:103233092 original size:80 final size:80
Alignment explanation
Indices: 103232955--103233257 Score: 326
Period size: 80 Copynumber: 3.8 Consensus size: 80
103232945 TCGAATGATG
** ** * *
103232955 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAG-GT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TGTATCCGGGCTAAG-TCCCGAAGAGC
* * * *
103233016 ATTGGTGCGAGTTACTAAA
63 ATTCGTGCTAGTGA-TATA
*
103233035 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTATCCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
* *
103233100 CATGCTAGTGATGTA
66 CGTGCTAGTGATATA
* *
103233115 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
103233180 CGTGCTAGTGATATA
66 CGTGCTAGTGATATA
* ** * * * * * *
103233195 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATGTCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
103233258 ATCATGCTGG
Statistics
Matches: 190, Mismatches: 29, Indels: 8
0.84 0.13 0.04
Matches are distributed among these distances:
79 1 0.01
80 166 0.87
81 17 0.09
82 6 0.03
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
CGTGCTAGTGATATA
Found at i:103237549 original size:184 final size:184
Alignment explanation
Indices: 103237240--103237607 Score: 700
Period size: 184 Copynumber: 2.0 Consensus size: 184
103237230 GATTGGCCAA
*
103237240 ACCTAAAATTCTGGAAATTTTATGGATGGAAGATATACAAGTCTATATTCAGGAAAACTTAACGG
1 ACCTAAAATTCTGGAAATTTTATGGATGGAAGATATACAAGTCTATATTCAGGAAAAATTAACGG
*
103237305 AAAGTGATTTGGAGTTTTGTAGCTCCGGTTATAAATAATTTAGTGACCATTGCTCAGGAAAATAA
66 AAAGTGATTTGGAGTTTTGTAGCTCCGGTTATAAATAATTTAGTGACCATTGCTCAGGAAAACAA
103237370 CTCGTAGTGAATATGTGATTTTGTTGTAAACATGGATAAAACTTGTTTTAGTTG
131 CTCGTAGTGAATATGTGATTTTGTTGTAAACATGGATAAAACTTGTTTTAGTTG
*
103237424 ACCTAAAATTCTGGAAATTTTATGGATGGAAGATATACGAGTCTATATTCAGGAAAAATTAACGG
1 ACCTAAAATTCTGGAAATTTTATGGATGGAAGATATACAAGTCTATATTCAGGAAAAATTAACGG
*
103237489 AAAGTGATTTGGAGTTTTGTAGCTCCGGTTATAAATAATTTAGTGACCATTGCTCAGGAAAACAG
66 AAAGTGATTTGGAGTTTTGTAGCTCCGGTTATAAATAATTTAGTGACCATTGCTCAGGAAAACAA
103237554 CTCGTAGTGAATATGTGATTTTGTTGTAAACATGGATAAAACTTGTTTTAGTTG
131 CTCGTAGTGAATATGTGATTTTGTTGTAAACATGGATAAAACTTGTTTTAGTTG
103237608 CTCATAAGCT
Statistics
Matches: 180, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
184 180 1.00
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.35
Consensus pattern (184 bp):
ACCTAAAATTCTGGAAATTTTATGGATGGAAGATATACAAGTCTATATTCAGGAAAAATTAACGG
AAAGTGATTTGGAGTTTTGTAGCTCCGGTTATAAATAATTTAGTGACCATTGCTCAGGAAAACAA
CTCGTAGTGAATATGTGATTTTGTTGTAAACATGGATAAAACTTGTTTTAGTTG
Found at i:103237876 original size:47 final size:47
Alignment explanation
Indices: 103237796--103238012 Score: 335
Period size: 47 Copynumber: 4.6 Consensus size: 47
103237786 TATTTAAATA
103237796 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
103237845 AATGTGAAAGTGTATATATTTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
103237892 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
103237939 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
103237986 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
103238013 TCCCGAAGGG
Statistics
Matches: 156, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
47 144 0.92
49 12 0.08
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:103239504 original size:29 final size:29
Alignment explanation
Indices: 103239469--103239542 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
103239459 GTTGTGAGAT
* *
103239469 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
103239498 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
103239527 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
103239543 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:103239978 original size:40 final size:40
Alignment explanation
Indices: 103239855--103240090 Score: 192
Period size: 40 Copynumber: 5.9 Consensus size: 40
103239845 TTGAATGATG
** *
103239855 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * * *
103239895 TCCGGACTAAGAT-CCGAAG-GCATTGGTACGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
*
103239935 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
** *
103239975 TCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** * * * *
103240015 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
103240055 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
103240091 CGTGTATTCG
Statistics
Matches: 158, Mismatches: 34, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
39 1 0.01
40 140 0.89
41 17 0.11
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:103248785 original size:46 final size:46
Alignment explanation
Indices: 103248735--103248907 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
103248725 TGGTTGAGCA
*
103248735 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
103248781 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
103248828 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
103248874 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
103248908 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:103248891 original size:93 final size:93
Alignment explanation
Indices: 103248732--103248902 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
103248722 GGATGGTTGA
* *
103248732 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
103248797 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
103248825 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
103248890 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
103248903 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Done.