Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 311 of 322
Found at i:103249169 original size:19 final size:20
Alignment explanation
Indices: 103249132--103249169 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
103249122 ATAAGGTGGT
103249132 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
103249152 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
103249170 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:103271903 original size:110 final size:110
Alignment explanation
Indices: 103271710--103272107 Score: 762
Period size: 110 Copynumber: 3.6 Consensus size: 110
103271700 CACCACAGAA
103271710 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATATAGATATTGTGGCTAGGCCACC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATATAGATATTGTGGCTAGGCCACC
103271775 AGAACAGATATATATATGTGTGTGTGTGTATGGCGAAGCCACCAG
66 AGAACAGATATATATATGTGTGTGTGTGTATGGCGAAGCCACCAG
103271820 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATATAGATATTGTGGCTAGGCCACC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATATAGATATTGTGGCTAGGCCACC
103271885 AGAACAGATATATATATGTGTGTGTGTGTATGGCGAAGCCACCAG
66 AGAACAGATATATATATGTGTGTGTGTGTATGGCGAAGCCACCAG
103271930 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATATAGATATTGTGGCTAGGCCACC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATATAGATATTGTGGCTAGGCCACC
103271995 AGAACAGATATATATATGTGTGTGTGTGTATGGCGAAGCCACCAG
66 AGAACAGATATATATATGTGTGTGTGTGTATGGCGAAGCCACCAG
* *
103272040 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGA-ACAGATATATGTGGCGAGGCCAC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATATAGATAT-TGTGGCTAGGCCAC
103272104 CAGA
65 CAGA
103272108 TTTCAGCGAG
Statistics
Matches: 285, Mismatches: 2, Indels: 2
0.99 0.01 0.01
Matches are distributed among these distances:
109 7 0.02
110 278 0.98
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (110 bp):
ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATATAGATATTGTGGCTAGGCCACC
AGAACAGATATATATATGTGTGTGTGTGTATGGCGAAGCCACCAG
Found at i:103272104 original size:27 final size:26
Alignment explanation
Indices: 103272056--103272107 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
103272046 GCGAGGCTGC
*
103272056 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
103272082 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
103272108 TTTCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:103276455 original size:25 final size:25
Alignment explanation
Indices: 103276427--103276476 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
103276417 GAATTAAGAT
103276427 TGTATAAATTGAAATTGAAATTGTA
1 TGTATAAATTGAAATTGAAATTGTA
103276452 TGTATAAATTGAAATTGAAATTGTA
1 TGTATAAATTGAAATTGAAATTGTA
103276477 AAAATAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.00, G:0.16, T:0.40
Consensus pattern (25 bp):
TGTATAAATTGAAATTGAAATTGTA
Found at i:103276478 original size:19 final size:19
Alignment explanation
Indices: 103276432--103276478 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
103276422 AAGATTGTAT
103276432 AAATTG-AAATTGAAATTG
1 AAATTGTAAATTGAAATTG
* *
103276450 -TATGTATAAATTGAAATTG
1 AAAT-TGTAAATTGAAATTG
103276469 AAATTGTAAA
1 AAATTGTAAA
103276479 AATAAATAGA
Statistics
Matches: 22, Mismatches: 4, Indels: 5
0.71 0.13 0.16
Matches are distributed among these distances:
17 2 0.09
18 1 0.05
19 17 0.77
20 2 0.09
ACGTcount: A:0.49, C:0.00, G:0.15, T:0.36
Consensus pattern (19 bp):
AAATTGTAAATTGAAATTG
Found at i:103276483 original size:25 final size:25
Alignment explanation
Indices: 103276430--103276493 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
103276420 TTAAGATTGT
***
103276430 ATAAATTGAAATTGAAATTGTATGT
1 ATAAATTGAAATTGAAATTGTAAAA
103276455 ATAAATTGAAATTGAAATTGTAAAA
1 ATAAATTGAAATTGAAATTGTAAAA
*
103276480 ATAAATAG-AATTGA
1 ATAAATTGAAATTGA
103276494 GGGAAAAGAT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
24 6 0.17
25 29 0.83
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.34
Consensus pattern (25 bp):
ATAAATTGAAATTGAAATTGTAAAA
Found at i:103277601 original size:64 final size:63
Alignment explanation
Indices: 103277500--103278372 Score: 1604
Period size: 64 Copynumber: 13.7 Consensus size: 63
103277490 TAAAAATATG
*
103277500 TCATTTCAGAGTATTATCATTTTTTGAAGTGATTTTTGTTAGATTTTGA-CTAAGGTAACAAAAA
1 TCATTTCAGAGTATTATCATTTTTTGAAGTGATTTTTGTT--ATCTTGAGCTAAGGTAACAAAAA
103277564 TCATTTCAGAGTATTATCATTTTTTGAAGTGATTTTTGTTATCTTGAGGCTAAGGTAACAAAAA
1 TCATTTCAGAGTATTATCATTTTTTGAAGTGATTTTTGTTATCTTGA-GCTAAGGTAACAAAAA
103277628 TCATTTCAGAGTATTATCATTTTTTGAAGTGATTTTTGTTATCTTGAGGCTAAGGTAACAAAAA
1 TCATTTCAGAGTATTATCATTTTTTGAAGTGATTTTTGTTATCTTGA-GCTAAGGTAACAAAAA
103277692 TCATTTCAGAGTATTATCATTTTTTGAAGTGATTTTTGTTATCTTGAGGCTAAGGTAACAAAAA
1 TCATTTCAGAGTATTATCATTTTTTGAAGTGATTTTTGTTATCTTGA-GCTAAGGTAACAAAAA
103277756 TCATTTCAGAGTATTATCATTTTTTGAAGTGATTTTTGTTATCTTGAGGCTAAGGTAACAAAAA
1 TCATTTCAGAGTATTATCATTTTTTGAAGTGATTTTTGTTATCTTGA-GCTAAGGTAACAAAAA
103277820 TCATTTCAGAGTATTATCATTTTTTGAAGTGATTTTTGTTATCTTGAGGCTAAGGTAACAAAAA
1 TCATTTCAGAGTATTATCATTTTTTGAAGTGATTTTTGTTATCTTGA-GCTAAGGTAACAAAAA
103277884 TCATTTCAGAGTATTATCATTTTTTGAAGTGATTTTTGTTATCTTGAGGCTAAGGTAACAAAAA
1 TCATTTCAGAGTATTATCATTTTTTGAAGTGATTTTTGTTATCTTGA-GCTAAGGTAACAAAAA
103277948 TCATTTCAGAGTATTATCATTTTTTGAAGTGATTTTTGTTATCTTGAGGCTAAGGTAACAAAAA
1 TCATTTCAGAGTATTATCATTTTTTGAAGTGATTTTTGTTATCTTGA-GCTAAGGTAACAAAAA
103278012 TCATTTCAGAGTATTATCATTTTTTGAAGTGATTTTTGTTATCTTGAGGCTAAGGTAACAAAAA
1 TCATTTCAGAGTATTATCATTTTTTGAAGTGATTTTTGTTATCTTGA-GCTAAGGTAACAAAAA
103278076 TCATTTCAGAGTATTATCATTTTTTGAAGTGATTTTTGTTATCTTGAGGCTAAGGTAACAAAAA
1 TCATTTCAGAGTATTATCATTTTTTGAAGTGATTTTTGTTATCTTGA-GCTAAGGTAACAAAAA
103278140 TCATTTCAGAGTATTATCATTTTTTGAAGTGATTTTTGTTATCTTGAGGCTAAGGTAACAAAAA
1 TCATTTCAGAGTATTATCATTTTTTGAAGTGATTTTTGTTATCTTGA-GCTAAGGTAACAAAAA
103278204 TCATTTCAGAGTATTATCATTTTTTGAAGTGATTTTTGTTATCTTGAGGCTAAGGTAACAAAAA
1 TCATTTCAGAGTATTATCATTTTTTGAAGTGATTTTTGTTATCTTGA-GCTAAGGTAACAAAAA
103278268 TCATTTCAGAGTATTATCATTTTTTGAAGTGATTTTTGTTATCTTGAGGCTAAGGTAACAAAAA
1 TCATTTCAGAGTATTATCATTTTTTGAAGTGATTTTTGTTATCTTGA-GCTAAGGTAACAAAAA
103278332 TCATTTCAGAGTATTATCATTTTTTGAAGTGATTTTTGTTA
1 TCATTTCAGAGTATTATCATTTTTTGAAGTGATTTTTGTTA
103278373 GATTTTGATT
Statistics
Matches: 806, Mismatches: 1, Indels: 4
0.99 0.00 0.00
Matches are distributed among these distances:
62 6 0.01
64 800 0.99
ACGTcount: A:0.31, C:0.09, G:0.17, T:0.43
Consensus pattern (63 bp):
TCATTTCAGAGTATTATCATTTTTTGAAGTGATTTTTGTTATCTTGAGCTAAGGTAACAAAAA
Found at i:103278736 original size:19 final size:20
Alignment explanation
Indices: 103278700--103278737 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
103278690 TATATATCTG
* *
103278700 TTTTATATATTTTTTTATAA
1 TTTTATATATTATGTTATAA
103278720 TTTT-TATATTATGTTATA
1 TTTTATATATTATGTTATA
103278738 TTATAATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (20 bp):
TTTTATATATTATGTTATAA
Found at i:103278745 original size:24 final size:24
Alignment explanation
Indices: 103278714--103278761 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
103278704 ATATATTTTT
*
103278714 TTATAATTTTTATATTATGT-TATA
1 TTATAATTTTGATA-TATGTGTATA
103278738 TTATAATTTTGATATATGTGTATA
1 TTATAATTTTGATATATGTGTATA
103278762 AGATGATTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 5 0.23
24 17 0.77
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.58
Consensus pattern (24 bp):
TTATAATTTTGATATATGTGTATA
Found at i:103296495 original size:30 final size:31
Alignment explanation
Indices: 103296456--103296517 Score: 74
Period size: 29 Copynumber: 2.0 Consensus size: 31
103296446 TAAATTAAAT
*
103296456 TGAGAATCTTAAATTGCTTATGATGAA-TGAA
1 TGAGAATCTT-AATCGCTTATGATGAATTGAA
* *
103296487 TGAG-ATCTTGATCGTTTATGATGAATTGAA
1 TGAGAATCTTAATCGCTTATGATGAATTGAA
103296517 T
1 T
103296518 TAAATTTTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 13 0.48
30 10 0.37
31 4 0.15
ACGTcount: A:0.34, C:0.06, G:0.21, T:0.39
Consensus pattern (31 bp):
TGAGAATCTTAATCGCTTATGATGAATTGAA
Found at i:103304769 original size:46 final size:46
Alignment explanation
Indices: 103304623--103304839 Score: 151
Period size: 46 Copynumber: 4.7 Consensus size: 46
103304613 AGTATATCTG
* * * * *
103304623 TGCCGATTCCATGTCCTAGACATGGTCTTCCACT-G-ACACATCTCG
1 TGCCGA-TGCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCA
* * *
103304668 TAGCCGATGCATGTCCCAGACAT-GTCTTATACTAGC-TTACGTCTCGA
1 T-GCCGATGCATGTCCCAGACATGGTCTTACACTAGCACT-CATCTC-A
* *
103304715 GGCCGATGCATGTCCTAGACAT-GTCTTACACTAGCACTCATCTCAA
1 TGCCGATGCATGTCCCAGACATGGTCTTACACTAGCACTCATCTC-A
* * * * * * *
103304761 TGCTGATGCCATGTCCCAAACATGGTATTACACTGGCTCTCATAAT-G
1 TGCCGATG-CATGTCCCAGACATGGTCTTACACTAGCACTCAT-CTCA
*
103304808 TGGCCGATGCATGTCCCAAACAT-GTCTTACAC
1 T-GCCGATGCATGTCCCAGACATGGTCTTACAC
103304840 CAGCTCACAA
Statistics
Matches: 137, Mismatches: 25, Indels: 19
0.76 0.14 0.10
Matches are distributed among these distances:
44 8 0.06
45 16 0.12
46 62 0.45
47 28 0.20
48 22 0.16
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (46 bp):
TGCCGATGCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCA
Found at i:103306143 original size:42 final size:43
Alignment explanation
Indices: 103306080--103306177 Score: 126
Period size: 42 Copynumber: 2.3 Consensus size: 43
103306070 GAAGTTTGAA
** * * *
103306080 CTCGTTGAGTGGTCCGGGTTCATGATATATGTGA-CATCTGAG
1 CTCGTTGAGTGGTCCAAGTTCATGATAGATGTGAGCACCCGAG
* *
103306122 CTCGTTGAGTGGTCCAAGTTCATTATGGATGTGAGCACCCGAG
1 CTCGTTGAGTGGTCCAAGTTCATGATAGATGTGAGCACCCGAG
103306165 CTCGTTGAGTGGT
1 CTCGTTGAGTGGT
103306178 TTGAGTTCAT
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 29 0.60
43 19 0.40
ACGTcount: A:0.18, C:0.18, G:0.32, T:0.32
Consensus pattern (43 bp):
CTCGTTGAGTGGTCCAAGTTCATGATAGATGTGAGCACCCGAG
Found at i:103307782 original size:19 final size:19
Alignment explanation
Indices: 103307758--103307794 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
103307748 TTACACGGTT
**
103307758 GGAGGACATTGGCGTGTCA
1 GGAGGACACCGGCGTGTCA
103307777 GGAGGACACCGGCGTGTC
1 GGAGGACACCGGCGTGTC
103307795 CCCTGTCTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.19, C:0.22, G:0.43, T:0.16
Consensus pattern (19 bp):
GGAGGACACCGGCGTGTCA
Found at i:103308924 original size:27 final size:28
Alignment explanation
Indices: 103308885--103308938 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
103308875 TGAGGATATT
103308885 AAGACATTAGTGGGTACTC-TTGAGTTGA
1 AAGACATTAGT-GGTACTCATTGAGTTGA
*
103308913 AAGA-ATTTGTGGTACTCATTGAGTTG
1 AAGACATTAGTGGTACTCATTGAGTTG
103308939 GCTTGTAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 7 0.29
27 13 0.54
28 4 0.17
ACGTcount: A:0.28, C:0.09, G:0.28, T:0.35
Consensus pattern (28 bp):
AAGACATTAGTGGTACTCATTGAGTTGA
Found at i:103319781 original size:10 final size:10
Alignment explanation
Indices: 103319766--103319791 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
103319756 AAACACTAAG
103319766 AGTTTGAATA
1 AGTTTGAATA
103319776 AGTTTGAATA
1 AGTTTGAATA
103319786 AGTTTG
1 AGTTTG
103319792 TTGCTAGCCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (10 bp):
AGTTTGAATA
Found at i:103325251 original size:42 final size:42
Alignment explanation
Indices: 103325197--103325316 Score: 143
Period size: 43 Copynumber: 2.8 Consensus size: 42
103325187 TTAGTGTTAC
* **
103325197 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATTGATA
1 TGAGATTACGTGTAAGACCATACCTGGGATATGGCAACGATA
* * *
103325239 TGAGACTT-CGTGTAAAACCATAGCTGGGCTATTGGCAACGATA
1 TGAGA-TTACGTGTAAGACCATACCTGGGATA-TGGCAACGATA
* *
103325282 CGAGATTACATGTAAGACCATACCTGGGATATGGC
1 TGAGATTACGTGTAAGACCATACCTGGGATATGGC
103325317 TTGGGTACGG
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
42 31 0.48
43 34 0.52
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.27
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATACCTGGGATATGGCAACGATA
Found at i:103325466 original size:19 final size:19
Alignment explanation
Indices: 103325442--103325479 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
103325432 TTTGTACAGG
103325442 TATGTACATAAAGTTTATA
1 TATGTACATAAAGTTTATA
103325461 TATGTACATAAAGTTTATA
1 TATGTACATAAAGTTTATA
103325480 AGCATTGACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.05, G:0.11, T:0.42
Consensus pattern (19 bp):
TATGTACATAAAGTTTATA
Found at i:103326152 original size:18 final size:19
Alignment explanation
Indices: 103326129--103326164 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
103326119 GAAGAGTTTT
103326129 ATTG-AAAACCTTGCTTTC
1 ATTGAAAAACCTTGCTTTC
*
103326147 ATTGAAAAACCTTTCTTT
1 ATTGAAAAACCTTGCTTT
103326165 AAAATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.31, C:0.19, G:0.08, T:0.42
Consensus pattern (19 bp):
ATTGAAAAACCTTGCTTTC
Found at i:103327468 original size:28 final size:29
Alignment explanation
Indices: 103327427--103327517 Score: 107
Period size: 29 Copynumber: 3.2 Consensus size: 29
103327417 AAGTCTACAT
*
103327427 ACATACATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
* * *
103327455 TCATTCATACGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
*
103327484 ACATTCATATGGCCCATCT-GGCCCGAATC
1 ACATTCATATGGCCCA-CTAGGCCCAAATC
103327513 A-ATTC
1 ACATTC
103327518 CAAGCCATGT
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
28 24 0.45
29 28 0.53
30 1 0.02
ACGTcount: A:0.29, C:0.34, G:0.14, T:0.23
Consensus pattern (29 bp):
ACATTCATATGGCCCACTAGGCCCAAATC
Found at i:103332234 original size:40 final size:40
Alignment explanation
Indices: 103332178--103332260 Score: 130
Period size: 40 Copynumber: 2.1 Consensus size: 40
103332168 TATTCGGATG
* * *
103332178 ATATCCGGACTCAGATCCGAAGGCATTTGTGCTAGTTACT
1 ATATCCGGAATAAGATCCGAAGGCAATTGTGCTAGTTACT
*
103332218 ATATCCGGAATAAGATCCGAAGGCAATTGTGCTAGTTATT
1 ATATCCGGAATAAGATCCGAAGGCAATTGTGCTAGTTACT
103332258 ATA
1 ATA
103332261 ACTAGGTTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (40 bp):
ATATCCGGAATAAGATCCGAAGGCAATTGTGCTAGTTACT
Found at i:103332281 original size:40 final size:40
Alignment explanation
Indices: 103332194--103332330 Score: 127
Period size: 40 Copynumber: 3.4 Consensus size: 40
103332184 GGACTCAGAT
* * * * *
103332194 CCGAAGGCATTTGTGCTAGTTACTATATCC-GGAATAAGAT-
1 CCGAAGGCATTCGTGCTAGCTATTATAACCAGG-TTAAG-TC
* *
103332234 CCGAAGGCAATT-GTGCTAGTTATTATAACTAGGTTAAGTC
1 CCGAAGGC-ATTCGTGCTAGCTATTATAACCAGGTTAAGTC
* ** *
103332274 CCTAAGGCATTCGTGCGGGCTATTATAACCGGGTTAAGTC
1 CCGAAGGCATTCGTGCTAGCTATTATAACCAGGTTAAGTC
103332314 CCGAAGGCATTCGTGCT
1 CCGAAGGCATTCGTGCT
103332331 GGTTGTTACA
Statistics
Matches: 81, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
39 4 0.05
40 72 0.89
41 5 0.06
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCTAGCTATTATAACCAGGTTAAGTC
Found at i:103340244 original size:72 final size:72
Alignment explanation
Indices: 103340127--103340270 Score: 270
Period size: 72 Copynumber: 2.0 Consensus size: 72
103340117 GTAATTAGTT
*
103340127 TATACTTATGACTGGTAGCCGAATGTGTATAGAGATCATGTTATAAAGCAAATTGAAACCATGCT
1 TATACTTATGACTGGTAGCCGAATGTGTATAGAGATCATGTTATAAAGCAAATCGAAACCATGCT
103340192 CTTTGTA
66 CTTTGTA
*
103340199 TATACTTATGACTGGTAGCCGAATGTGTATAGAGATCATGTTATAAAGCAAATCGAAATCATGCT
1 TATACTTATGACTGGTAGCCGAATGTGTATAGAGATCATGTTATAAAGCAAATCGAAACCATGCT
103340264 CTTTGTA
66 CTTTGTA
103340271 AGTGGCTATT
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 70 1.00
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.33
Consensus pattern (72 bp):
TATACTTATGACTGGTAGCCGAATGTGTATAGAGATCATGTTATAAAGCAAATCGAAACCATGCT
CTTTGTA
Found at i:103340453 original size:40 final size:40
Alignment explanation
Indices: 103340391--103340473 Score: 121
Period size: 40 Copynumber: 2.1 Consensus size: 40
103340381 TATTTGGATG
* * *
103340391 ATATCCGGACTCAGATCTGAAGGCATTTGTGCTAGTTACT
1 ATATCCGGACTAAGATCCGAAGGCAATTGTGCTAGTTACT
* *
103340431 ATATTCGGACTAAGATCCGAAGGCAATTGTGCTAGTTATT
1 ATATCCGGACTAAGATCCGAAGGCAATTGTGCTAGTTACT
103340471 ATA
1 ATA
103340474 ATTGGGTTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.33
Consensus pattern (40 bp):
ATATCCGGACTAAGATCCGAAGGCAATTGTGCTAGTTACT
Found at i:103340491 original size:40 final size:40
Alignment explanation
Indices: 103340403--103340523 Score: 113
Period size: 40 Copynumber: 3.0 Consensus size: 40
103340393 ATCCGGACTC
* * * **
103340403 AGATCTGAAGGCATTTGTGCTAGTTACTAT-ATTCGGACTA
1 AGATCCGAAGGCAATTGTGCTAGTTATTATAATT-GGGTTA
103340443 AGATCCGAAGGCAATTGTGCTAGTTATTATAATTGGGTTA
1 AGATCCGAAGGCAATTGTGCTAGTTATTATAATTGGGTTA
** **
103340483 AG-TCCCGAAGGC-ATTCGTGCGGGTTATTATAACCGGGTTA
1 AGAT-CCGAAGGCAATT-GTGCTAGTTATTATAATTGGGTTA
103340523 A
1 A
103340524 ATTCTCTGAG
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
39 4 0.06
40 62 0.90
41 3 0.04
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (40 bp):
AGATCCGAAGGCAATTGTGCTAGTTATTATAATTGGGTTA
Found at i:103341342 original size:54 final size:54
Alignment explanation
Indices: 103341260--103341369 Score: 211
Period size: 54 Copynumber: 2.0 Consensus size: 54
103341250 AGACAAATGG
103341260 CATAGTCATTGAAGCTTTATACAGGGAGATATCTGATTCGTAATACACAGAGGT
1 CATAGTCATTGAAGCTTTATACAGGGAGATATCTGATTCGTAATACACAGAGGT
*
103341314 CATAGTCATTGAAGCTTTATACAGGGAGATATCTGATTTGTAATACACAGAGGT
1 CATAGTCATTGAAGCTTTATACAGGGAGATATCTGATTCGTAATACACAGAGGT
103341368 CA
1 CA
103341370 GAGTAGTAGA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.30
Consensus pattern (54 bp):
CATAGTCATTGAAGCTTTATACAGGGAGATATCTGATTCGTAATACACAGAGGT
Found at i:103342774 original size:24 final size:24
Alignment explanation
Indices: 103342746--103342805 Score: 93
Period size: 24 Copynumber: 2.5 Consensus size: 24
103342736 TAAATACCAA
* *
103342746 TCCAACCTTGCACTCCGTATCCCT
1 TCCAACCCTACACTCCGTATCCCT
*
103342770 TCCAACCCTACACTCTGTATCCCT
1 TCCAACCCTACACTCCGTATCCCT
103342794 TCCAACCCTACA
1 TCCAACCCTACA
103342806 GTCGTCAAGC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.22, C:0.47, G:0.05, T:0.27
Consensus pattern (24 bp):
TCCAACCCTACACTCCGTATCCCT
Found at i:103343359 original size:29 final size:29
Alignment explanation
Indices: 103343280--103343364 Score: 88
Period size: 29 Copynumber: 3.0 Consensus size: 29
103343270 ACATACATGG
* *
103343280 ATATGGCCCA-CTAGGTCCAATCTCATTC
1 ATATGGCCCATCTAGGCCCAATCACATTC
* *
103343308 ATACGGCCCAT-TAGGCCTAAATCACATTC
1 ATATGGCCCATCTAGGCC-CAATCACATTC
103343337 ATATGGCCCATCT-GGCCCGAATCA-ATTC
1 ATATGGCCCATCTAGGCCC-AATCACATTC
103343365 CAAGCCATGT
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
28 18 0.38
29 28 0.60
30 1 0.02
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.26
Consensus pattern (29 bp):
ATATGGCCCATCTAGGCCCAATCACATTC
Found at i:103343491 original size:20 final size:20
Alignment explanation
Indices: 103343466--103343513 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
103343456 GCCCATTCTA
103343466 GCCCAGATGGCCTAAGTACG
1 GCCCAGATGGCCTAAGTACG
103343486 GCCCAGATGGCCTAAGTACG
1 GCCCAGATGGCCTAAGTACG
103343506 GCCCAGAT
1 GCCCAGAT
103343514 CCATGAGATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.25, C:0.31, G:0.29, T:0.15
Consensus pattern (20 bp):
GCCCAGATGGCCTAAGTACG
Found at i:103351007 original size:18 final size:18
Alignment explanation
Indices: 103350969--103351032 Score: 85
Period size: 18 Copynumber: 3.6 Consensus size: 18
103350959 CAACGATATG
*
103350969 CAATCTTATATATGA-TA
1 CAATCTTAGATATGATTA
103350986 CAATCTTAGATATGATTA
1 CAATCTTAGATATGATTA
* *
103351004 CAATCTTAGGTATGATATG
1 CAATCTTAGATATGAT-TA
103351023 CAATCTTAGA
1 CAATCTTAGA
103351033 AGATATGATT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
17 14 0.34
18 17 0.41
19 10 0.24
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (18 bp):
CAATCTTAGATATGATTA
Found at i:103351039 original size:17 final size:19
Alignment explanation
Indices: 103350963--103351032 Score: 92
Period size: 17 Copynumber: 3.8 Consensus size: 19
103350953 AATCTTCAAC
*
103350963 GATATGCAATCTTATATAT
1 GATATGCAATCTTAGATAT
103350982 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
103350999 GAT-TACAATCTTAGGTAT
1 GATATGCAATCTTAGATAT
103351017 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
103351033 AGATATGATT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
17 15 0.34
18 15 0.34
19 14 0.32
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:103351068 original size:21 final size:23
Alignment explanation
Indices: 103351024--103351068 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
103351014 TATGATATGC
*
103351024 AATCTTAGAAGATATGATTTTGT
1 AATCTTAGAAGATATGAATTTGT
*
103351047 AATCTTA-AAGAT-TTAATTTGT
1 AATCTTAGAAGATATGAATTTGT
103351068 A
1 A
103351069 GATGCCTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 8 0.40
22 5 0.25
23 7 0.35
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.44
Consensus pattern (23 bp):
AATCTTAGAAGATATGAATTTGT
Found at i:103352482 original size:12 final size:12
Alignment explanation
Indices: 103352467--103352491 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
103352457 TAACACTCGA
103352467 TTTAAAAATGGT
1 TTTAAAAATGGT
103352479 TTTAAAAATGGT
1 TTTAAAAATGGT
103352491 T
1 T
103352492 ACGACAGCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.16, T:0.44
Consensus pattern (12 bp):
TTTAAAAATGGT
Found at i:103356714 original size:7 final size:7
Alignment explanation
Indices: 103356697--103356751 Score: 62
Period size: 7 Copynumber: 7.9 Consensus size: 7
103356687 TCTATTTCAA
103356697 AAAAAAGG
1 AAAAAA-G
103356705 AAAAAAG
1 AAAAAAG
103356712 --AAAAG
1 AAAAAAG
103356717 AAAAAGAG
1 AAAAA-AG
103356725 AAAAAA-
1 AAAAAAG
103356731 AGAAAAAG
1 A-AAAAAG
103356739 AAAAAAG
1 AAAAAAG
103356746 AAAAAA
1 AAAAAA
103356752 TGGAGAGGCC
Statistics
Matches: 42, Mismatches: 0, Indels: 11
0.79 0.00 0.21
Matches are distributed among these distances:
5 5 0.12
6 1 0.02
7 22 0.52
8 14 0.33
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:103356715 original size:6 final size:6
Alignment explanation
Indices: 103356706--103356750 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
103356696 AAAAAAAGGA
*
103356706 AAAAAG -AAAAG AAAAAG -AGAA- AAAAAG AAAAAG AAAAAAG AAAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG -AAAAAG AAAAA
103356751 ATGGAGAGGC
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
5 11 0.33
6 16 0.48
7 6 0.18
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:103356730 original size:22 final size:21
Alignment explanation
Indices: 103356697--103356751 Score: 85
Period size: 21 Copynumber: 2.6 Consensus size: 21
103356687 TCTATTTCAA
*
103356697 AAAAAAGGAAAAAAG-AAAAG
1 AAAAAAGAAAAAAAGAAAAAG
103356717 AAAAAGAGAAAAAAAGAAAAAG
1 AAAAA-AGAAAAAAAGAAAAAG
103356739 AAAAAAGAAAAAA
1 AAAAAAGAAAAAA
103356752 TGGAGAGGCC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
20 5 0.16
21 17 0.53
22 10 0.31
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (21 bp):
AAAAAAGAAAAAAAGAAAAAG
Found at i:103356731 original size:16 final size:15
Alignment explanation
Indices: 103356695--103356744 Score: 59
Period size: 16 Copynumber: 3.4 Consensus size: 15
103356685 CTTCTATTTC
*
103356695 AAAAAAAAG-GAAA-
1 AAAAAAAAGAAAAAG
*
103356708 AAAGAAAAGAAAAAG
1 AAAAAAAAGAAAAAG
103356723 AGAAAAAAAGAAAAAG
1 A-AAAAAAAGAAAAAG
103356739 AAAAAA
1 AAAAAA
103356745 GAAAAAATGG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
13 8 0.26
14 3 0.10
15 6 0.19
16 14 0.45
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (15 bp):
AAAAAAAAGAAAAAG
Found at i:103356743 original size:13 final size:13
Alignment explanation
Indices: 103356706--103356750 Score: 56
Period size: 13 Copynumber: 3.4 Consensus size: 13
103356696 AAAAAAAGGA
103356706 AAAAAGAAAAGAA-
1 AAAAAGAAAA-AAG
*
103356719 AAAGAGAAAAAAAG
1 AAAAAG-AAAAAAG
103356733 AAAAAGAAAAAAG
1 AAAAAGAAAAAAG
103356746 AAAAA
1 AAAAA
103356751 ATGGAGAGGC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 19 0.68
14 9 0.32
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAAAAG
Found at i:103357920 original size:89 final size:87
Alignment explanation
Indices: 103357792--103357952 Score: 198
Period size: 89 Copynumber: 1.8 Consensus size: 87
103357782 TTCGACGGAT
* * *
103357792 AGCAAATCGAAGACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGA
1 AGCAAATCGAAGACATAGCAGATCTAACCTTCCGATGTTTACAC-T-GAAGCAGATCCAAGATGA
*
103357857 TTTGGCATCCTTGCGTTTACAAGG
64 TATGGCATCCTTGCGTTTACAAGG
* * ** * *
103357881 AGCAGATCGAAGACATAGCAGATTTGGCTTTCACG-TGTTTACACTGAAGCAGATCTAAGATGAT
1 AGCAAATCGAAGACATAGCAGATCTAACCTTC-CGATGTTTACACTGAAGCAGATCCAAGATGAT
103357945 ATGGCATC
65 ATGGCATC
103357953 TCTGTACTGT
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
87 24 0.39
88 1 0.02
89 35 0.57
90 1 0.02
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (87 bp):
AGCAAATCGAAGACATAGCAGATCTAACCTTCCGATGTTTACACTGAAGCAGATCCAAGATGATA
TGGCATCCTTGCGTTTACAAGG
Found at i:103358087 original size:78 final size:78
Alignment explanation
Indices: 103357985--103358279 Score: 484
Period size: 78 Copynumber: 3.8 Consensus size: 78
103357975 CAAAGAAACA
* * * *
103357985 GATTTGGCATCTCCATATTTGACGGAGAGCAGATCGAAGACATAGTAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
103358050 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
103358063 AATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGATCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
103358128 GCAGATCCAAGAT
66 GCAGATCCAAGAT
*
103358141 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
103358205 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* *
103358219 GATTTGGCATCTCTGTATTAGATGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
103358280 GTGTTTACAT
Statistics
Matches: 201, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
77 1 0.00
78 199 0.99
79 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:103359995 original size:28 final size:28
Alignment explanation
Indices: 103359913--103360090 Score: 234
Period size: 28 Copynumber: 6.4 Consensus size: 28
103359903 GAGATTGGCG
* * * *
103359913 CTAAGTGTGCGGGTTTAAATTGTGCAGCA
1 CTAAGTGTGCGAGTTT-GATTATGTAGCA
* *
103359942 CTAAGTGTGCGA-ATTGACTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
103359969 CTAAGTGTGCGAGTTTGACTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
103359997 CTAAGTGTGCGAGCTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
103360025 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
103360053 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
103360080 CTGAGTGTGCG
1 CTAAGTGTGCG
103360091 GACTTATTAT
Statistics
Matches: 136, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
27 44 0.32
28 81 0.60
29 11 0.08
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATGTAGCA
Found at i:103361749 original size:44 final size:45
Alignment explanation
Indices: 103361630--103361794 Score: 201
Period size: 45 Copynumber: 3.7 Consensus size: 45
103361620 GGGCTGTTAC
* * *
103361630 ATTAGACGGGGAGCAAATC-AGAGATAACAAATTTGGCATCTCTGT
1 ATTAGACGGGGAGCAGATCGA-AGATAACAGATTTGGCGTCTCTGT
* *
103361675 ATTAGACGGGGAGCAGATTGAAGA-AGCAGATTTGGCGTCTCTG-
1 ATTAGACGGGGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGT
*
103361718 ATTAGAAGGGGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGT
1 ATTAGACGGGGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGT
* * * * *
103361763 ATTAGATGGAGAGCATATCAAAGATAGCAGAT
1 ATTAGACGGGGAGCAGATCGAAGATAACAGAT
103361795 ATCGCCTTCC
Statistics
Matches: 104, Mismatches: 13, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
43 22 0.21
44 34 0.33
45 47 0.45
46 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.29, T:0.24
Consensus pattern (45 bp):
ATTAGACGGGGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGT
Found at i:103362184 original size:18 final size:18
Alignment explanation
Indices: 103362146--103362209 Score: 94
Period size: 18 Copynumber: 3.6 Consensus size: 18
103362136 CAATGATATG
103362146 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
103362163 CAATCTTAGATATGATTA
1 CAATCTTAGATATGATTA
* *
103362181 CAATCTTAGGTATGATATG
1 CAATCTTAGATATGAT-TA
103362200 CAATCTTAGA
1 CAATCTTAGA
103362210 AGATATGATT
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
17 15 0.36
18 17 0.40
19 10 0.24
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (18 bp):
CAATCTTAGATATGATTA
Found at i:103362216 original size:17 final size:19
Alignment explanation
Indices: 103362138--103362209 Score: 105
Period size: 17 Copynumber: 3.9 Consensus size: 19
103362128 ATAATCTTCA
103362138 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
103362157 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
* *
103362174 ATGAT-TACAATCTTAGGT
1 ATGATATGCAATCTTAGAT
103362192 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
103362210 AGATATGATT
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
17 16 0.34
18 15 0.32
19 16 0.34
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:103363406 original size:88 final size:88
Alignment explanation
Indices: 103363203--103363395 Score: 386
Period size: 88 Copynumber: 2.2 Consensus size: 88
103363193 AAAACATAGT
103363203 GTCCTAACTTACTGGATATGGCATTTTGTTGTTTCGAGATAGAAATTTCCGAAAGACGAGCTTAG
1 GTCCTAACTTACTGGATATGGCATTTTGTTGTTTCGAGATAGAAATTTCCGAAAGACGAGCTTAG
103363268 TTTCGAAGGTTTTAAAATGTTGC
66 TTTCGAAGGTTTTAAAATGTTGC
103363291 GTCCTAACTTACTGGATATGGCATTTTGTTGTTTCGAGATAGAAATTTCCGAAAGACGAGCTTAG
1 GTCCTAACTTACTGGATATGGCATTTTGTTGTTTCGAGATAGAAATTTCCGAAAGACGAGCTTAG
103363356 TTTCGAAGGTTTTAAAATGTTGC
66 TTTCGAAGGTTTTAAAATGTTGC
103363379 GTCCTAACTTACTGGAT
1 GTCCTAACTTACTGGAT
103363396 GTGATGTTTT
Statistics
Matches: 105, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 105 1.00
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36
Consensus pattern (88 bp):
GTCCTAACTTACTGGATATGGCATTTTGTTGTTTCGAGATAGAAATTTCCGAAAGACGAGCTTAG
TTTCGAAGGTTTTAAAATGTTGC
Found at i:103363752 original size:12 final size:12
Alignment explanation
Indices: 103363737--103363761 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
103363727 TAAAACTCAA
103363737 TTTAAAAATGGT
1 TTTAAAAATGGT
103363749 TTTAAAAATGGT
1 TTTAAAAATGGT
103363761 T
1 T
103363762 ACCACAGCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.16, T:0.44
Consensus pattern (12 bp):
TTTAAAAATGGT
Found at i:103365373 original size:18 final size:18
Alignment explanation
Indices: 103365350--103365414 Score: 51
Period size: 18 Copynumber: 3.3 Consensus size: 18
103365340 ACTCTACTTT
103365350 TATCTTATTCTTTATGCA
1 TATCTTATTCTTTATGCA
*
103365368 TATCTTTTATATTAACTTTACG-A
1 TATC---T-TATT--CTTTATGCA
*
103365391 TGTCTTATTCTTTATGCA
1 TATCTTATTCTTTATGCA
103365409 TATCTT
1 TATCTT
103365415 TTATATCAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 14
0.67 0.07 0.26
Matches are distributed among these distances:
17 6 0.17
18 10 0.28
19 4 0.11
20 1 0.03
21 1 0.03
22 4 0.11
23 4 0.11
24 6 0.17
ACGTcount: A:0.23, C:0.15, G:0.06, T:0.55
Consensus pattern (18 bp):
TATCTTATTCTTTATGCA
Found at i:103368699 original size:25 final size:25
Alignment explanation
Indices: 103368665--103368713 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
103368655 TGTAGAGAAA
103368665 AAATTCTCTAAAGAAATTATTTTAG
1 AAATTCTCTAAAGAAATTATTTTAG
* * *
103368690 AAATTTTCTAAAGATATTTTTTTA
1 AAATTCTCTAAAGAAATTATTTTA
103368714 TTTACAACTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.41, C:0.06, G:0.06, T:0.47
Consensus pattern (25 bp):
AAATTCTCTAAAGAAATTATTTTAG
Found at i:103375181 original size:103 final size:103
Alignment explanation
Indices: 103374931--103375598 Score: 1142
Period size: 103 Copynumber: 6.4 Consensus size: 103
103374921 ATGCAGAAGG
103374931 ACAATTTAATTTAATTAGGTAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTA
1 ACAATTTAATTTAATTAGGTAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTA
103374996 AATTAAAATAAAATAAAATATTTAAAATAAAACTTTAAAT
66 AATT-AAA-AAAATAAAATATTTAAAATAAAACTTTAAAT
103375036 ACAATTTAATTTAATTAGGTAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTA
1 ACAATTTAATTTAATTAGGTAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTA
103375101 AATTAAAAAAATAAAATATTTAAAATAAAACTTTAAAT
66 AATTAAAAAAATAAAATATTTAAAATAAAACTTTAAAT
*
103375139 ACAATTTAATTTAATTAGGTAATTTAACAATAAAACAAAAGTAAACAAAATATTTTTCGTGATTA
1 ACAATTTAATTTAATTAGGTAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTA
103375204 AATTAAAAAAATAAAATATTTAAAATAAAACTTTAAAT
66 AATTAAAAAAATAAAATATTTAAAATAAAACTTTAAAT
*
103375242 ACAATTTAATTTAATTAGGTAATTTAACAATAAAACAAAAGTAAACAAAATATTTTTCGTGATTA
1 ACAATTTAATTTAATTAGGTAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTA
103375307 AATTAAAAAAATAAAATATTTAAAATAAAACTTTAAAT
66 AATTAAAAAAATAAAATATTTAAAATAAAACTTTAAAT
* *
103375345 ACAATTTAATTTAATTAGGTAATTTAACAATAAAACAAAAGTAAACAAAATATTTTTCGTTATTA
1 ACAATTTAATTTAATTAGGTAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTA
103375410 AATTAAAATAACAT-AAATATTTAAAATAAAACTTTAAAT
66 AATTAAAA-AA-ATAAAATATTTAAAATAAAACTTTAAAT
* * *
103375449 ATAATTTAATTTAATTAGGTGATTTAAAAATAAAATAAAAGTAGAA-AAAATATTTTTCGTGATT
1 ACAATTTAATTTAATTAGGTAATTTAACAATAAAATAAAAGTA-AACAAAATATTTTTCGTGATT
103375513 AAATTAAAATAAAATAAAATAACATATTCAAAATAAAACTTTAAAT
65 AAATT-AAA-AAAATAAAAT---AT-TT-AAAATAAAACTTTAAAT
*
103375559 ACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAA
1 ACAATTTAATTTAATTAGGTAATTTAACAATAAAATAAAA
103375599 TATTTAAAAT
Statistics
Matches: 543, Mismatches: 9, Indels: 17
0.95 0.02 0.03
Matches are distributed among these distances:
103 308 0.57
104 93 0.17
105 82 0.15
106 1 0.00
108 2 0.00
109 2 0.00
110 55 0.10
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.35
Consensus pattern (103 bp):
ACAATTTAATTTAATTAGGTAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTA
AATTAAAAAAATAAAATATTTAAAATAAAACTTTAAAT
Found at i:103378778 original size:15 final size:15
Alignment explanation
Indices: 103378744--103378782 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
103378734 CATATCCCCA
*
103378744 AAACCCCTAAACCAT
1 AAACCCTTAAACCAT
*
103378759 AAACCCTTAAACCCT
1 AAACCCTTAAACCAT
*
103378774 TAACCCTTA
1 AAACCCTTA
103378783 TCCTTAACTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.41, C:0.38, G:0.00, T:0.21
Consensus pattern (15 bp):
AAACCCTTAAACCAT
Found at i:103378817 original size:14 final size:14
Alignment explanation
Indices: 103378801--103379019 Score: 71
Period size: 14 Copynumber: 15.0 Consensus size: 14
103378791 TCTTGACCCC
* *
103378801 TAAACCATAAACCC
1 TAAACCCTAAACCA
*
103378815 TAAA-CCTCAACCA
1 TAAACCCTAAACCA
* *
103378828 TTAAACCATAAACAA
1 -TAAACCCTAAACCA
* **
103378843 TAATCCCTAGATTCA
1 TAAACCCTA-AACCA
* * *
103378858 TAATCCATAATCCA
1 TAAACCCTAAACCA
* **
103378872 TAAACCTTAAAATA
1 TAAACCCTAAACCA
* *
103378886 TTAACTCATAAACCA
1 TAAAC-CCTAAACCA
* *
103378901 GAAACCCTTAAACCT
1 TAAACCC-TAAACCA
* *
103378916 TAAACCTTAAACCT
1 TAAACCCTAAACCA
*
103378930 TAAACCCTAAACCT
1 TAAACCCTAAACCA
* *
103378944 TAAACCCATAATCCC
1 TAAACCC-TAAACCA
* **
103378959 TAAATCCATAGTCCA
1 TAAA-CCCTAAACCA
* **
103378974 TAAACCTTAAAATA
1 TAAACCCTAAACCA
*
103378988 TTAACTCATCATAAACCA
1 TAAAC-C--C-TAAACCA
103379006 TAAACCCTAAACCA
1 TAAACCCTAAACCA
103379020 CATACCCGGC
Statistics
Matches: 150, Mismatches: 44, Indels: 22
0.69 0.20 0.10
Matches are distributed among these distances:
13 6 0.04
14 76 0.51
15 56 0.37
16 2 0.01
17 1 0.01
18 9 0.06
ACGTcount: A:0.46, C:0.29, G:0.01, T:0.24
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:103378839 original size:7 final size:7
Alignment explanation
Indices: 103378801--103378984 Score: 82
Period size: 7 Copynumber: 25.6 Consensus size: 7
103378791 TCTTGACCCC
103378801 TAAACCA
1 TAAACCA
*
103378808 TAAACCC
1 TAAACCA
103378815 TAAACC-
1 TAAACCA
*
103378821 TCAACCA
1 TAAACCA
103378828 TTAAACCA
1 -TAAACCA
*
103378836 TAAACAA
1 TAAACCA
* *
103378843 TAATCCC
1 TAAACCA
**
103378850 TAGATTCA
1 TA-AACCA
*
103378858 TAATCCA
1 TAAACCA
*
103378865 TAATCCA
1 TAAACCA
*
103378872 TAAACCT
1 TAAACCA
**
103378879 TAAAATA
1 TAAACCA
*
103378886 TTAACTCA
1 TAAAC-CA
103378894 TAAACCA
1 TAAACCA
* *
103378901 GAAACCCT
1 TAAA-CCA
*
103378909 TAAACCT
1 TAAACCA
*
103378916 TAAACCT
1 TAAACCA
*
103378923 TAAACCT
1 TAAACCA
*
103378930 TAAACCC
1 TAAACCA
*
103378937 TAAACCT
1 TAAACCA
103378944 TAAACCCA
1 TAAA-CCA
* *
103378952 TAATCCC
1 TAAACCA
103378959 TAAATCCA
1 TAAA-CCA
**
103378967 TAGTCCA
1 TAAACCA
*
103378974 TAAACCT
1 TAAACCA
103378981 TAAA
1 TAAA
103378985 ATATTAACTC
Statistics
Matches: 136, Mismatches: 34, Indels: 14
0.74 0.18 0.08
Matches are distributed among these distances:
6 5 0.04
7 101 0.74
8 30 0.22
ACGTcount: A:0.46, C:0.29, G:0.02, T:0.24
Consensus pattern (7 bp):
TAAACCA
Found at i:103381023 original size:21 final size:21
Alignment explanation
Indices: 103380999--103381045 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
103380989 ATTAACGTGA
103380999 GTGTTGGGTCTTTGGTACGGC
1 GTGTTGGGTCTTTGGTACGGC
*
103381020 GTGTTGGGTCTTTGGTAGGGC
1 GTGTTGGGTCTTTGGTACGGC
*
103381041 ATGTT
1 GTGTT
103381046 AGTTGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.06, C:0.11, G:0.43, T:0.40
Consensus pattern (21 bp):
GTGTTGGGTCTTTGGTACGGC
Found at i:103383339 original size:26 final size:26
Alignment explanation
Indices: 103383310--103383417 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
103383300 TGGTACAAAT
103383310 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
103383336 TGATAATAGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
103383362 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
103383388 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
103383414 TGAT
1 TGAT
103383418 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:103387641 original size:18 final size:18
Alignment explanation
Indices: 103387618--103387653 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
103387608 TTGGGGAAAA
103387618 GTGCAAATATGTGAAATT
1 GTGCAAATATGTGAAATT
103387636 GTGCAAATATGTGAAATT
1 GTGCAAATATGTGAAATT
103387654 TAGGGGTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.06, G:0.22, T:0.33
Consensus pattern (18 bp):
GTGCAAATATGTGAAATT
Found at i:103388265 original size:42 final size:44
Alignment explanation
Indices: 103388207--103388311 Score: 124
Period size: 44 Copynumber: 2.4 Consensus size: 44
103388197 TTTGAACTTA
* * * **
103388207 TTGAGTGGTCCAAGTTCGT-G-ATCTATGTGGCATCCGAGCTCG
1 TTGAGAGGTCCAAGTTCATCGCATCCATGTAACATCCGAGCTCG
* *
103388249 TTGAGAGGTCCAAGTTCATCGCATCCATTTAACATTCGAGCTCG
1 TTGAGAGGTCCAAGTTCATCGCATCCATGTAACATCCGAGCTCG
*
103388293 TTGAGAGGTCCGAGTTCAT
1 TTGAGAGGTCCAAGTTCAT
103388312 TATAGATGTA
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
42 17 0.32
43 1 0.02
44 35 0.66
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (44 bp):
TTGAGAGGTCCAAGTTCATCGCATCCATGTAACATCCGAGCTCG
Found at i:103390383 original size:24 final size:24
Alignment explanation
Indices: 103390356--103390409 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 24
103390346 TTTATTTTCA
*
103390356 TTTTTTGAA-TTATATATATTAAT
1 TTTTTTTAAGTTATATATATTAAT
* * **
103390379 TTTTTATAAGTTTTATATATTTCT
1 TTTTTTTAAGTTATATATATTAAT
103390403 TTTTTTT
1 TTTTTTT
103390410 TTCCTAAAAA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
23 7 0.29
24 17 0.71
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.69
Consensus pattern (24 bp):
TTTTTTTAAGTTATATATATTAAT
Found at i:103391107 original size:18 final size:18
Alignment explanation
Indices: 103391071--103391105 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
103391061 TATTTTAAAA
103391071 ATATTTATAATAATTTTT
1 ATATTTATAATAATTTTT
*
103391089 ATATTTTTAA-AATTTTT
1 ATATTTATAATAATTTTT
103391106 TAGAATTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
ATATTTATAATAATTTTT
Found at i:103394153 original size:15 final size:15
Alignment explanation
Indices: 103394096--103394153 Score: 55
Period size: 16 Copynumber: 3.7 Consensus size: 15
103394086 TTTTGCCTGT
103394096 GTGTTTTTAGGGTTA
1 GTGTTTTTAGGGTTA
*
103394111 GGGTTTTTTAGGGTTTA
1 GTG-TTTTTAGGG-TTA
* *
103394128 AT-TGATTTAGGGTTA
1 GTGT-TTTTAGGGTTA
103394143 GTGTTTTTAGG
1 GTGTTTTTAGG
103394154 ATTTAAGGTT
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
15 13 0.39
16 17 0.52
17 3 0.09
ACGTcount: A:0.16, C:0.00, G:0.33, T:0.52
Consensus pattern (15 bp):
GTGTTTTTAGGGTTA
Found at i:103394195 original size:16 final size:16
Alignment explanation
Indices: 103394155--103394195 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
103394145 GTTTTTAGGA
103394155 TTTAAGGTTAGGGTTT
1 TTTAAGGTTAGGGTTT
* *
103394171 GTTAAGGTTATGGTTT
1 TTTAAGGTTAGGGTTT
*
103394187 TTTAGGGTT
1 TTTAAGGTT
103394196 TAAAATTTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.17, C:0.00, G:0.32, T:0.51
Consensus pattern (16 bp):
TTTAAGGTTAGGGTTT
Found at i:103395898 original size:48 final size:46
Alignment explanation
Indices: 103395813--103395946 Score: 162
Period size: 48 Copynumber: 2.8 Consensus size: 46
103395803 ATGCAAACAT
* **
103395813 CATAAATGAAAAAAAATCAAGCAGTATTGAAATTTTAATTATAA-TTG
1 CATAAATGAAAAAATATCAAATAGTATTGAAA-TTTAATTA-AATTTG
103395860 CATAAATGAATAAAATATCAAATAGTATTGCAAATTTAATTAAATTTG
1 CATAAATGAA-AAAATATCAAATAGTATTG-AAATTTAATTAAATTTG
* *
103395908 CATAAATTAAAAAAATATCGAATAGTATTGAAAATTTAA
1 CATAAA-TGAAAAAATATCAAATAGTATTG-AAATTTAA
103395947 AATTATCACT
Statistics
Matches: 77, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
47 12 0.16
48 59 0.77
49 6 0.08
ACGTcount: A:0.52, C:0.06, G:0.09, T:0.33
Consensus pattern (46 bp):
CATAAATGAAAAAATATCAAATAGTATTGAAATTTAATTAAATTTG
Found at i:103396104 original size:10 final size:11
Alignment explanation
Indices: 103396080--103396153 Score: 71
Period size: 11 Copynumber: 6.9 Consensus size: 11
103396070 TTTTAAACAA
*
103396080 AGAAATTTGAT
1 AGAATTTTGAT
103396091 AGAATTTTGA-
1 AGAATTTTGAT
103396101 AGAATTTTGAT
1 AGAATTTTGAT
*
103396112 AGAATTTTGAG
1 AGAATTTTGAT
* **
103396123 AAAATTTCAAT
1 AGAATTTTGAT
*
103396134 -GAAATTTGAT
1 AGAATTTTGAT
*
103396144 AGATTTTTGA
1 AGAATTTTGA
103396154 AAAGAATATT
Statistics
Matches: 49, Mismatches: 12, Indels: 4
0.75 0.18 0.06
Matches are distributed among these distances:
10 16 0.33
11 33 0.67
ACGTcount: A:0.41, C:0.01, G:0.18, T:0.41
Consensus pattern (11 bp):
AGAATTTTGAT
Found at i:103396109 original size:21 final size:21
Alignment explanation
Indices: 103396079--103396125 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
103396069 ATTTTAAACA
103396079 AAGAAATTTGATAGAATTTTG
1 AAGAAATTTGATAGAATTTTG
*
103396100 AAGAATTTTGATAGAATTTTG
1 AAGAAATTTGATAGAATTTTG
103396121 -AGAAA
1 AAGAAA
103396126 ATTTCAATGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 4 0.17
21 20 0.83
ACGTcount: A:0.45, C:0.00, G:0.19, T:0.36
Consensus pattern (21 bp):
AAGAAATTTGATAGAATTTTG
Found at i:103403787 original size:25 final size:25
Alignment explanation
Indices: 103403759--103403815 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 25
103403749 TTGGGGCATG
*
103403759 TGATTTTTGAAGATGGTATCCGAGT
1 TGATTTTCGAAGATGGTATCCGAGT
103403784 TGATTTTCGAAGATGGTATCCGAGT
1 TGATTTTCGAAGATGGTATCCGAGT
*
103403809 AGATTTT
1 TGATTTT
103403816 GGTAAAATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.25, C:0.09, G:0.26, T:0.40
Consensus pattern (25 bp):
TGATTTTCGAAGATGGTATCCGAGT
Found at i:103405489 original size:21 final size:21
Alignment explanation
Indices: 103405465--103405513 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
103405455 AGTGTACCTT
*
103405465 AGTCATACAGGCGTGTGTCTC
1 AGTCACACAGGCGTGTGTCTC
*
103405486 AGTCACACAGGCTTGTGTCTC
1 AGTCACACAGGCGTGTGTCTC
103405507 AGTCACA
1 AGTCACA
103405514 TGATATTGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (21 bp):
AGTCACACAGGCGTGTGTCTC
Found at i:103409397 original size:42 final size:42
Alignment explanation
Indices: 103409337--103409497 Score: 162
Period size: 42 Copynumber: 3.7 Consensus size: 42
103409327 CATTTTCTCG
** * *
103409337 ATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAAT-A
1 ATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-ATCA
* * *
103409379 ATGTCATAGCCCAGCTATGGTCTTACACATATTCATATATCG
1 ATGCCATAGCCCAGCTATGGTCTTACACATATTCACATATCA
*
103409421 ATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATATCG
1 ATGCCATAGCCCAGCTATGGTCTTACAC---AT---AT-TCACATATCA
*
103409470 ATGCCATAGGCCAGCTATGGTCTTACAC
1 ATGCCATAGCCCAGCTATGGTCTTACAC
103409498 GGATCACAGA
Statistics
Matches: 101, Mismatches: 10, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
41 2 0.02
42 59 0.58
45 2 0.02
48 2 0.02
49 36 0.36
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (42 bp):
ATGCCATAGCCCAGCTATGGTCTTACACATATTCACATATCA
Found at i:103409477 original size:49 final size:48
Alignment explanation
Indices: 103409404--103409635 Score: 222
Period size: 48 Copynumber: 4.9 Consensus size: 48
103409394 TATGGTCTTA
*
103409404 CACATATTCATATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
1 CACATA-TCACATATCGATGCCATAGCCCAGCTATGGTCTTACACG-AAT
* *
103409454 CACATATCACATATCGATGCCATAGGCCAGCTATGGTCTTACACGGAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
* * ** *
103409502 CACAGATCACATATTGATGTTATAGCCCAGCTATGTTCTTACACGAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
* * * * * * *
103409550 CACATATCTCACTA---ATGTCATATCCCAGATATGGTCTTATACAGTAG
1 CACATATCACA-TATCGATGCCATAGCCCAGCTATGGTCTTACAC-GAAT
* * * *
103409597 CATATATCAC--ATCGATGCCATATCCTAGATATGGTCTTA
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTA
103409636 TACGGAAGCT
Statistics
Matches: 154, Mismatches: 23, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
44 1 0.01
46 23 0.15
47 33 0.21
48 52 0.34
49 39 0.25
50 6 0.04
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (48 bp):
CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
Found at i:103411239 original size:27 final size:27
Alignment explanation
Indices: 103411208--103411385 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
103411198 TAAATTGTAC
103411208 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
103411235 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
103411261 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
103411289 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
103411317 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
103411344 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
103411371 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
103411386 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:103411322 original size:82 final size:81
Alignment explanation
Indices: 103411209--103411364 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
103411199 AAATTGTACA
* *
103411209 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
103411273 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
103411290 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
103411355 TGCGAGTTGA
65 TGCGAATTGA
103411365 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:103411376 original size:82 final size:81
Alignment explanation
Indices: 103411205--103411385 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
103411195 GATTAAATTG
* *
103411205 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
103411270 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
103411286 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
103411350 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
103411368 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
103411386 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:103412289 original size:56 final size:56
Alignment explanation
Indices: 103412203--103412317 Score: 221
Period size: 56 Copynumber: 2.1 Consensus size: 56
103412193 ATGAGTTTGT
*
103412203 TTTCATGAGGAAGTAACGAAAAGATCATATGGGTAGTATATTAAGAGATAATCAGA
1 TTTCATGAGGAAGTAACGAAAAGATCATATGGGCAGTATATTAAGAGATAATCAGA
103412259 TTTCATGAGGAAGTAACGAAAAGATCATATGGGCAGTATATTAAGAGATAATCAGA
1 TTTCATGAGGAAGTAACGAAAAGATCATATGGGCAGTATATTAAGAGATAATCAGA
103412315 TTT
1 TTT
103412318 TTGTGGGACA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 58 1.00
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.28
Consensus pattern (56 bp):
TTTCATGAGGAAGTAACGAAAAGATCATATGGGCAGTATATTAAGAGATAATCAGA
Found at i:103412869 original size:148 final size:148
Alignment explanation
Indices: 103412601--103412896 Score: 565
Period size: 148 Copynumber: 2.0 Consensus size: 148
103412591 AAATACATAG
*
103412601 ATGGGCACATGAGTCTAGTTTCTGGGAAAAATTACAAAACTGATTTTCGAGTTACGAAACTCAAG
1 ATGGGAACATGAGTCTAGTTTCTGGGAAAAATTACAAAACTGATTTTCGAGTTACGAAACTCAAG
103412666 ATATGATTTTTAAAACGACTAGTAAACAGATTGGGCAGTGTCTGGAAAATAAATTTTATAAGGGG
66 ATATGATTTTTAAAACGACTAGTAAACAGATTGGGCAGTGTCTGGAAAATAAATTTTATAAGGGG
103412731 TTAAAGTCAGTTAACACC
131 TTAAAGTCAGTTAACACC
*
103412749 ATGGGAACATGAGTCTAGTTTCTGGGAAAAATTACAAAACTGATTTTTGAGTTACGAAACTCAAG
1 ATGGGAACATGAGTCTAGTTTCTGGGAAAAATTACAAAACTGATTTTCGAGTTACGAAACTCAAG
*
103412814 ATATGATTTTTAAAACGACTAGTACACAGATTGGGCAGTGTCTGGAAAATAAATTTTATAAGGGG
66 ATATGATTTTTAAAACGACTAGTAAACAGATTGGGCAGTGTCTGGAAAATAAATTTTATAAGGGG
103412879 TTAAAGTCAGTTAACACC
131 TTAAAGTCAGTTAACACC
103412897 TCGTGTTCGA
Statistics
Matches: 145, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
148 145 1.00
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.29
Consensus pattern (148 bp):
ATGGGAACATGAGTCTAGTTTCTGGGAAAAATTACAAAACTGATTTTCGAGTTACGAAACTCAAG
ATATGATTTTTAAAACGACTAGTAAACAGATTGGGCAGTGTCTGGAAAATAAATTTTATAAGGGG
TTAAAGTCAGTTAACACC
Found at i:103414160 original size:69 final size:69
Alignment explanation
Indices: 103414049--103414185 Score: 256
Period size: 69 Copynumber: 2.0 Consensus size: 69
103414039 GGCAATAATT
* *
103414049 GTCACGAGAAACCTGAATGTGCCCAATGTGGAAGACGACACCTAGGTGAATGTTGGGGCAAGTCT
1 GTCACGAGAAACCTGAATGTCCCCAATGTGGAAGACGACACCTAGGTGAATGTTGGAGCAAGTCT
103414114 ACTC
66 ACTC
103414118 GTCACGAGAAACCTGAATGTCCCCAATGTGGAAGACGACACCTAGGTGAATGTTGGAGCAAGTCT
1 GTCACGAGAAACCTGAATGTCCCCAATGTGGAAGACGACACCTAGGTGAATGTTGGAGCAAGTCT
103414183 ACT
66 ACT
103414186 AGCAGGGCCT
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 66 1.00
ACGTcount: A:0.30, C:0.22, G:0.28, T:0.20
Consensus pattern (69 bp):
GTCACGAGAAACCTGAATGTCCCCAATGTGGAAGACGACACCTAGGTGAATGTTGGAGCAAGTCT
ACTC
Found at i:103416245 original size:17 final size:19
Alignment explanation
Indices: 103416218--103416257 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
103416208 TTCGATCAGG
103416218 TGGGCCGTGTGGG-CCACA
1 TGGGCCGTGTGGGCCCACA
103416236 TGGG-CGTGTGGGCCCACA
1 TGGGCCGTGTGGGCCCACA
103416254 TGGG
1 TGGG
103416258 TGAACCACAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.10, C:0.25, G:0.47, T:0.17
Consensus pattern (19 bp):
TGGGCCGTGTGGGCCCACA
Found at i:103426364 original size:29 final size:29
Alignment explanation
Indices: 103426326--103426400 Score: 114
Period size: 29 Copynumber: 2.6 Consensus size: 29
103426316 CCATATTCAC
* *
103426326 ATGGCCCATTAGGCCCAAATCACCTGTAT
1 ATGGCCCATTAGGCCCAAATAACATGTAT
*
103426355 ATGGCCCATTAGGCCCAAATAACATTTAT
1 ATGGCCCATTAGGCCCAAATAACATGTAT
*
103426384 ATGGCCCGTTAGGCCCA
1 ATGGCCCATTAGGCCCA
103426401 GTCATATTCA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (29 bp):
ATGGCCCATTAGGCCCAAATAACATGTAT
Found at i:103428162 original size:40 final size:40
Alignment explanation
Indices: 103428118--103428459 Score: 445
Period size: 40 Copynumber: 8.8 Consensus size: 40
103428108 GGATATAGCT
*
103428118 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
***
103428158 ACTCGCACAAATGCCTTCGGGACTTAGCCC---ATTCCCA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* * * * *
103428195 A---AC-CAAGTACCTTCGGGATTTA-ACCGG-ATATAGCT-
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAG-TA
* *
103428230 ACTCGCTCAAATGCCTTCGGGACTTAGCCTGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
*
103428270 ACTCGCAAAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
103428310 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
103428350 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
103428390 ACTCACACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
103428430 ACTAGCACAAATGCCTTCGGGACTTAGCCC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC
103428460 CATTATCATC
Statistics
Matches: 265, Mismatches: 26, Indels: 22
0.85 0.08 0.07
Matches are distributed among these distances:
32 2 0.01
33 16 0.06
34 3 0.01
35 2 0.01
37 5 0.02
38 1 0.00
39 17 0.06
40 217 0.82
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:103428272 original size:112 final size:112
Alignment explanation
Indices: 103428075--103428419 Score: 462
Period size: 112 Copynumber: 3.0 Consensus size: 112
103428065 CAAGATCGCT
103428075 CATTCCCAAACCAAGTACCTTCGGGATTTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGA
1 CATTCCCAAACCAAGTACCTTCGGGATTTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGA
103428140 CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
66 CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
103428187 CATTCCCAAACCAAGTACCTTCGGGATTTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGA
1 CATTCCCAAACCAAGTACCTTCGGGATTTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGA
* *
103428252 CTTAGCCTGG-ATATAGTAACTCGCAAAAATGCCTTCGGGACTTAGCC
66 CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
*** * * * * * *
103428299 CGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATTAG-TAACTCGCACAAAT
1 C---ATTCCCAA---AC-CAAGTACCTTCGGGATTTA-ACCGGATA-TAGCT-ACTCGCTCAAAT
*
103428362 GCCTTCGGGACTTAGCCCGGAATTAGTAACTCACACAAATGCCTTCGGGACTTAGCC
56 GCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
103428419 C
1 C
103428420 GGAATTAGTC
Statistics
Matches: 207, Mismatches: 14, Indels: 16
0.87 0.06 0.07
Matches are distributed among these distances:
111 2 0.01
112 108 0.52
115 5 0.02
118 1 0.00
119 18 0.09
120 71 0.34
121 2 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (112 bp):
CATTCCCAAACCAAGTACCTTCGGGATTTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGA
CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
Found at i:103431731 original size:40 final size:40
Alignment explanation
Indices: 103431328--103431719 Score: 595
Period size: 40 Copynumber: 9.8 Consensus size: 40
103431318 GAGAATTAAG
*
103431328 AGTGATATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
103431368 AGTGATGTATCCGGGCTAAGTCCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
103431408 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
103431448 AGTGATATATCTGGGCTAAGTCGCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
103431488 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
**
103431528 AGTGATATATCTTGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
103431568 CGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
103431608 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
103431648 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
103431688 GGTGTTATATCCGGGCTAGGTCCTGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
103431720 ATCATGCTGG
Statistics
Matches: 317, Mismatches: 35, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 317 1.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:103435510 original size:22 final size:22
Alignment explanation
Indices: 103435482--103435557 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
103435472 AGGTGTGTAT
103435482 ATGTGATAAGGCCTAATGGTCG
1 ATGTGATAAGGCCTAATGGTCG
* *** **
103435504 ATGTGATGAATGTGAAAGTGTGTAT
1 ATGTGAT-AAGGCCTAA-TG-GTCG
*
103435529 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGTCG
103435551 ATGTGAT
1 ATGTGAT
103435558 GAATGTGAAA
Statistics
Matches: 38, Mismatches: 13, Indels: 6
0.67 0.23 0.11
Matches are distributed among these distances:
22 15 0.39
23 7 0.18
24 7 0.18
25 9 0.24
ACGTcount: A:0.29, C:0.09, G:0.32, T:0.30
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGTCG
Found at i:103435543 original size:47 final size:47
Alignment explanation
Indices: 103435474--103435867 Score: 599
Period size: 47 Copynumber: 8.4 Consensus size: 47
103435464 GGTGTACAAG
* *
103435474 GTGTGTATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
*
103435521 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
* *
103435568 GTGTGTATATGTGATATGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
* *
103435615 GTGTATATATGTGATAAGGCCGAATGGCCCATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
* * *
103435662 GTGAATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
* *
103435709 GTGTGTATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
* * * *
103435756 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
* * * *
103435803 GTGTATATATGTGATAAGGCCGAATAGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
*
103435850 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
103435868 TCCCGAAGGG
Statistics
Matches: 321, Mismatches: 26, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 321 1.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
Found at i:103436999 original size:57 final size:57
Alignment explanation
Indices: 103436911--103437023 Score: 217
Period size: 57 Copynumber: 2.0 Consensus size: 57
103436901 GCGAAAATGA
*
103436911 CATCTTTTGAATGTTTCCTTAGTGAAGTTTAAATTTTACCTCTGGCTGTGCTTAGTG
1 CATCTTTTGAATGTTTACTTAGTGAAGTTTAAATTTTACCTCTGGCTGTGCTTAGTG
103436968 CATCTTTTGAATGTTTACTTAGTGAAGTTTAAATTTTACCTCTGGCTGTGCTTAGT
1 CATCTTTTGAATGTTTACTTAGTGAAGTTTAAATTTTACCTCTGGCTGTGCTTAGT
103437024 ACTTATTTAA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.20, C:0.15, G:0.19, T:0.46
Consensus pattern (57 bp):
CATCTTTTGAATGTTTACTTAGTGAAGTTTAAATTTTACCTCTGGCTGTGCTTAGTG
Found at i:103451894 original size:15 final size:13
Alignment explanation
Indices: 103451865--103451889 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
103451855 GCCGAACAGG
103451865 GACACGCCCGTGC
1 GACACGCCCGTGC
103451878 GACACGCCCGTG
1 GACACGCCCGTG
103451890 TGCGAGTACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.44, G:0.32, T:0.08
Consensus pattern (13 bp):
GACACGCCCGTGC
Found at i:103462566 original size:40 final size:40
Alignment explanation
Indices: 103462472--103462616 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
103462462 TACTCGAATG
*
103462472 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
103462513 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
103462553 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
103462593 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
103462617 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:103477175 original size:79 final size:82
Alignment explanation
Indices: 103477058--103477242 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
103477048 GCTACTCGTT
* * * *
103477058 CAAATGGCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
103477121 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
103477138 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
103477201 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
103477218 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
103477243 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.60
80 33 0.37
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:103477242 original size:40 final size:40
Alignment explanation
Indices: 103477039--103477242 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
103477029 TGGAATTTAA
** * *
103477039 CCGGATATAGCT-ACTCGTTCAAATGGCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
103477079 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
103477119 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
103477158 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
103477198 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
103477238 CCGGA
1 CCGGA
103477243 CATCATTCAA
Statistics
Matches: 138, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 91 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:103478040 original size:56 final size:56
Alignment explanation
Indices: 103477973--103478204 Score: 446
Period size: 56 Copynumber: 4.1 Consensus size: 56
103477963 TATTAGTTTA
* *
103477973 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTGATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
103478029 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
103478085 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
103478141 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
103478197 TTGCCCAT
1 TTGCCCAT
103478205 CATCCCTTGT
Statistics
Matches: 174, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 174 1.00
ACGTcount: A:0.23, C:0.22, G:0.09, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:103481126 original size:14 final size:14
Alignment explanation
Indices: 103481107--103481140 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
103481097 ATATAATCCA
103481107 AAAGTGTGTAGCCG
1 AAAGTGTGTAGCCG
*
103481121 AAAGTGTGTAGCTG
1 AAAGTGTGTAGCCG
103481135 AAAGTG
1 AAAGTG
103481141 AGACTCCTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.32, C:0.09, G:0.35, T:0.24
Consensus pattern (14 bp):
AAAGTGTGTAGCCG
Found at i:103486723 original size:18 final size:16
Alignment explanation
Indices: 103486701--103486752 Score: 50
Period size: 18 Copynumber: 3.0 Consensus size: 16
103486691 GACAATTCTT
103486701 TTCTCTTCTTCTTTTC
1 TTCTCTTCTTCTTTTC
*
103486717 TCCTCTCTTCATCTATGTTC
1 T--TCTCTTCTTCT-T-TTC
*
103486737 TTTTCTTCTTCTTTTC
1 TTCTCTTCTTCTTTTC
103486753 CTCTATAGCC
Statistics
Matches: 29, Mismatches: 3, Indels: 8
0.73 0.08 0.20
Matches are distributed among these distances:
16 4 0.14
17 1 0.03
18 19 0.66
19 1 0.03
20 4 0.14
ACGTcount: A:0.04, C:0.31, G:0.02, T:0.63
Consensus pattern (16 bp):
TTCTCTTCTTCTTTTC
Found at i:103488022 original size:28 final size:28
Alignment explanation
Indices: 103487985--103488072 Score: 99
Period size: 28 Copynumber: 3.2 Consensus size: 28
103487975 GGAGGAAGTG
103487985 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * *
103488013 TTCTGGTGGCCCCGCCACAATTATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * **
103488041 ATCTGGTGACTCTATCAC-AATATCTG-
1 TTCTGGTGGCTCTGCCACAAATATCTGT
103488067 TTCTGG
1 TTCTGG
103488073 CAGCCATGCT
Statistics
Matches: 49, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
26 5 0.10
27 7 0.14
28 37 0.76
ACGTcount: A:0.18, C:0.26, G:0.20, T:0.35
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:103490295 original size:28 final size:29
Alignment explanation
Indices: 103490273--103490366 Score: 120
Period size: 29 Copynumber: 3.3 Consensus size: 29
103490263 CCCCATTCAT
*
103490273 ATTCGTATGGCCCATTAGGCCCAAATCAC
1 ATTCATATGGCCCATTAGGCCCAAATCAC
*
103490302 CTGT-ATATGGCCCATTAGGCCCAAATCAC
1 AT-TCATATGGCCCATTAGGCCCAAATCAC
* * *
103490331 ATTTATATGGCCCGTTAGGCCC-AGTCAC
1 ATTCATATGGCCCATTAGGCCCAAATCAC
103490359 ATTCATAT
1 ATTCATAT
103490367 TCATTCTCAC
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
28 13 0.23
29 43 0.75
30 1 0.02
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.28
Consensus pattern (29 bp):
ATTCATATGGCCCATTAGGCCCAAATCAC
Found at i:103490317 original size:29 final size:29
Alignment explanation
Indices: 103490278--103490353 Score: 125
Period size: 29 Copynumber: 2.6 Consensus size: 29
103490268 TTCATATTCG
*
103490278 TATGGCCCATTAGGCCCAAATCACCTGTA
1 TATGGCCCATTAGGCCCAAATCACATGTA
*
103490307 TATGGCCCATTAGGCCCAAATCACATTTA
1 TATGGCCCATTAGGCCCAAATCACATGTA
*
103490336 TATGGCCCGTTAGGCCCA
1 TATGGCCCATTAGGCCCA
103490354 GTCACATTCA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.25
Consensus pattern (29 bp):
TATGGCCCATTAGGCCCAAATCACATGTA
Found at i:103490447 original size:17 final size:18
Alignment explanation
Indices: 103490425--103490458 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
103490415 TGCCTATTAT
103490425 GGGCCCA-ATAGCCTATC
1 GGGCCCATATAGCCTATC
*
103490442 GGGCCCATTTAGCCTAT
1 GGGCCCATATAGCCTAT
103490459 TCTGGCCCGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.32, G:0.24, T:0.24
Consensus pattern (18 bp):
GGGCCCATATAGCCTATC
Found at i:103494151 original size:28 final size:29
Alignment explanation
Indices: 103494129--103494222 Score: 120
Period size: 29 Copynumber: 3.3 Consensus size: 29
103494119 CCCCATTCAT
*
103494129 ATTCGTATGGCCCATTAGGCCCAAATCAC
1 ATTCATATGGCCCATTAGGCCCAAATCAC
*
103494158 CTGT-ATATGGCCCATTAGGCCCAAATCAC
1 AT-TCATATGGCCCATTAGGCCCAAATCAC
* * *
103494187 ATTTATATGGCCCGTTAGGCCC-AGTCAC
1 ATTCATATGGCCCATTAGGCCCAAATCAC
103494215 ATTCATAT
1 ATTCATAT
103494223 TCATTCTCAC
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
28 13 0.23
29 43 0.75
30 1 0.02
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.28
Consensus pattern (29 bp):
ATTCATATGGCCCATTAGGCCCAAATCAC
Found at i:103494173 original size:29 final size:29
Alignment explanation
Indices: 103494134--103494209 Score: 125
Period size: 29 Copynumber: 2.6 Consensus size: 29
103494124 TTCATATTCG
*
103494134 TATGGCCCATTAGGCCCAAATCACCTGTA
1 TATGGCCCATTAGGCCCAAATCACATGTA
*
103494163 TATGGCCCATTAGGCCCAAATCACATTTA
1 TATGGCCCATTAGGCCCAAATCACATGTA
*
103494192 TATGGCCCGTTAGGCCCA
1 TATGGCCCATTAGGCCCA
103494210 GTCACATTCA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.25
Consensus pattern (29 bp):
TATGGCCCATTAGGCCCAAATCACATGTA
Found at i:103494303 original size:17 final size:18
Alignment explanation
Indices: 103494281--103494314 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
103494271 TGCCTATTAT
103494281 GGGCCCA-ATAGCCTATC
1 GGGCCCATATAGCCTATC
*
103494298 GGGCCCATTTAGCCTAT
1 GGGCCCATATAGCCTAT
103494315 TCTGGCCCGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.32, G:0.24, T:0.24
Consensus pattern (18 bp):
GGGCCCATATAGCCTATC
Found at i:103496664 original size:21 final size:21
Alignment explanation
Indices: 103496630--103496668 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
103496620 ATAAGCATTA
103496630 TTATAATTGATTTTTAATGCT
1 TTATAATTGATTTTTAATGCT
103496651 TTAT-ATTGATTTTTAATG
1 TTATAATTGATTTTTAATG
103496669 ATAATTATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.28, C:0.03, G:0.10, T:0.59
Consensus pattern (21 bp):
TTATAATTGATTTTTAATGCT
Found at i:103499154 original size:30 final size:30
Alignment explanation
Indices: 103499120--103499180 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
103499110 TCCTTAACTC
103499120 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
103499150 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
103499180 A
1 A
103499181 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:103505893 original size:78 final size:78
Alignment explanation
Indices: 103505780--103505927 Score: 242
Period size: 78 Copynumber: 1.9 Consensus size: 78
103505770 GTTAGCTGTG
103505780 TGACCCAAGTCAGTAACCCCTCCAGTTTTCCCACGGCCAAGGCACACGGGCGTGTCTCCGACCGT
1 TGACCCAAGTCAGTAACCCCTCCAGTTTTCCCACGGCCAAGGCACACGGGCGTGTCTCCGACCGT
103505845 GTGGTTGGTCGTT
66 GTGGTTGGTCGTT
* * * * **
103505858 TGACCGAAGTTAGTAACCCCTCTAGTTTTCCCACGGCCAAGGCACACGGGTGTGTCTCCGGGCGT
1 TGACCCAAGTCAGTAACCCCTCCAGTTTTCCCACGGCCAAGGCACACGGGCGTGTCTCCGACCGT
103505923 GTGGT
66 GTGGT
103505928 GTAAGTCAGT
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
78 64 1.00
ACGTcount: A:0.17, C:0.31, G:0.28, T:0.24
Consensus pattern (78 bp):
TGACCCAAGTCAGTAACCCCTCCAGTTTTCCCACGGCCAAGGCACACGGGCGTGTCTCCGACCGT
GTGGTTGGTCGTT
Found at i:103522446 original size:16 final size:16
Alignment explanation
Indices: 103522413--103522447 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
103522403 TAGAGCTAAG
103522413 ATTTTTGGAGACAGAT
1 ATTTTTGGAGACAGAT
103522429 ATTTTATGGAGACA-AT
1 ATTTT-TGGAGACAGAT
103522445 ATT
1 ATT
103522448 AGTATTTCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 10 0.56
17 8 0.44
ACGTcount: A:0.34, C:0.06, G:0.20, T:0.40
Consensus pattern (16 bp):
ATTTTTGGAGACAGAT
Found at i:103530562 original size:27 final size:26
Alignment explanation
Indices: 103530532--103530735 Score: 194
Period size: 27 Copynumber: 7.5 Consensus size: 26
103530522 AAATTGTACA
*
103530532 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTG
* * *
103530559 GCACTAAGTGTGCGAAATGAATATGTT
1 GCACTAAGTGTGCG-ATTGACTATGTG
* *
103530586 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCG-ATTGACTATG-TG
* *
103530613 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTG
103530640 GCACTAAGTGTGCGAGTCTGACTATGTG
1 GCACTAAGTGTGCGA-T-TGACTATGTG
* *
103530668 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-TTGACTATGTG
* * *
103530695 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTG
*
103530722 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
103530736 GGCTCAATAT
Statistics
Matches: 156, Mismatches: 16, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
26 1 0.01
27 128 0.82
28 27 0.17
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTG
Found at i:103530592 original size:54 final size:53
Alignment explanation
Indices: 103530532--103530735 Score: 219
Period size: 54 Copynumber: 3.8 Consensus size: 53
103530522 AAATTGTACA
* *
103530532 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGTT
1 GCACTAAGTGTGCGATT-GACTATGTTGCACTAAGTGTGCGAATTGAATATGTG
* * * ** *
103530586 GCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTTGCACTAAGTGTGCGAATTGAATATGTG
* * * *
103530640 GCACTAAGTGTGCGAGTCTGACTATGTGGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-T-TGACTATGTTGCACTAAGTGTGCGAATTGAATATGTG
* * * *
103530695 GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGA-TTGACTATGTTGCACTAAGTGTGCG
103530736 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
53 1 0.01
54 77 0.61
55 48 0.38
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (53 bp):
GCACTAAGTGTGCGATTGACTATGTTGCACTAAGTGTGCGAATTGAATATGTG
Found at i:103530726 original size:109 final size:108
Alignment explanation
Indices: 103530532--103530735 Score: 284
Period size: 109 Copynumber: 1.9 Consensus size: 108
103530522 AAATTGTACA
* * * *
103530532 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGAGTCGACTATGTGGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
103530597 GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
66 GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
** *
103530640 GCACTAAGTGTGCGAGTCTGACTATGTGGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTGGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
** * *
103530705 TGCGAGTTGATTAT-ATAGCACTGAGTGTGCG
65 TGCGAAATGAATATGAT-GCACTAAGTGTGCG
103530736 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
108 19 0.23
109 64 0.77
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (108 bp):
GCACTAAGTGTGCGAGTCGACTATGTGGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
Found at i:103539058 original size:27 final size:26
Alignment explanation
Indices: 103539028--103539231 Score: 194
Period size: 27 Copynumber: 7.5 Consensus size: 26
103539018 AAATTGTACA
*
103539028 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTG
* * *
103539055 GCACTAAGTGTGCGAAATGAATATGTT
1 GCACTAAGTGTGCG-ATTGACTATGTG
* *
103539082 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCG-ATTGACTATG-TG
* *
103539109 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTG
103539136 GCACTAAGTGTGCGAGTCTGACTATGTG
1 GCACTAAGTGTGCGA-T-TGACTATGTG
* *
103539164 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-TTGACTATGTG
* * *
103539191 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTG
*
103539218 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
103539232 GGCTCAATAT
Statistics
Matches: 156, Mismatches: 16, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
26 1 0.01
27 128 0.82
28 27 0.17
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTG
Found at i:103539088 original size:54 final size:53
Alignment explanation
Indices: 103539028--103539231 Score: 219
Period size: 54 Copynumber: 3.8 Consensus size: 53
103539018 AAATTGTACA
* *
103539028 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGTT
1 GCACTAAGTGTGCGATT-GACTATGTTGCACTAAGTGTGCGAATTGAATATGTG
* * * ** *
103539082 GCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTTGCACTAAGTGTGCGAATTGAATATGTG
* * * *
103539136 GCACTAAGTGTGCGAGTCTGACTATGTGGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-T-TGACTATGTTGCACTAAGTGTGCGAATTGAATATGTG
* * * *
103539191 GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGA-TTGACTATGTTGCACTAAGTGTGCG
103539232 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
53 1 0.01
54 77 0.61
55 48 0.38
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (53 bp):
GCACTAAGTGTGCGATTGACTATGTTGCACTAAGTGTGCGAATTGAATATGTG
Found at i:103539222 original size:109 final size:108
Alignment explanation
Indices: 103539028--103539231 Score: 284
Period size: 109 Copynumber: 1.9 Consensus size: 108
103539018 AAATTGTACA
* * * *
103539028 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGAGTCGACTATGTGGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
103539093 GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
66 GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
** *
103539136 GCACTAAGTGTGCGAGTCTGACTATGTGGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTGGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
** * *
103539201 TGCGAGTTGATTAT-ATAGCACTGAGTGTGCG
65 TGCGAAATGAATATGAT-GCACTAAGTGTGCG
103539232 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
108 19 0.23
109 64 0.77
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (108 bp):
GCACTAAGTGTGCGAGTCGACTATGTGGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
Found at i:103544165 original size:40 final size:39
Alignment explanation
Indices: 103544107--103544191 Score: 98
Period size: 40 Copynumber: 2.2 Consensus size: 39
103544097 ACTTAATTCA
* * * *
103544107 CCAGCATTAAGCCTGCGGGACTTTAAACCTGGATACAATC
1 CCAGCATGAAGCCAGCGGGACTCT-AACCCGGATACAATC
* *
103544147 CCAGCATGAAGCCAGCGGGTCTCTAACCCGGATGCAATC
1 CCAGCATGAAGCCAGCGGGACTCTAACCCGGATACAATC
*
103544186 TCAGCA
1 CCAGCA
103544192 CAATTCATTT
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 18 0.47
40 20 0.53
ACGTcount: A:0.28, C:0.31, G:0.22, T:0.19
Consensus pattern (39 bp):
CCAGCATGAAGCCAGCGGGACTCTAACCCGGATACAATC
Found at i:103544368 original size:47 final size:45
Alignment explanation
Indices: 103544262--103544370 Score: 114
Period size: 47 Copynumber: 2.4 Consensus size: 45
103544252 TGCACACTTT
* *
103544262 TCACAATTGGTCATTCAGCCTTATCACATATTCACTTACACATATA
1 TCAC-ATTGGCCATTCGGCCTTATCACATATTCACTTACACATATA
** *
103544308 TCACATTAACCATTCGGCCTTATCACATGTATGT-ACTTTCACAT-TCA
1 TCACATTGGCCATTCGGCCTTATCACA--TAT-TCACTTACACATAT-A
103544355 TCACATTGGCCATTCG
1 TCACATTGGCCATTCG
103544371 ATCTTAAGCT
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
45 19 0.37
46 5 0.10
47 27 0.52
48 1 0.02
ACGTcount: A:0.28, C:0.28, G:0.09, T:0.35
Consensus pattern (45 bp):
TCACATTGGCCATTCGGCCTTATCACATATTCACTTACACATATA
Found at i:103546963 original size:22 final size:20
Alignment explanation
Indices: 103546923--103546963 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
103546913 AGTCCTATTA
*
103546923 ACTAAATTCACATGCAATTG
1 ACTAAATTCACATGAAATTG
103546943 ACTAAATTCAAACATGAAATT
1 ACTAAATTC--ACATGAAATT
103546964 TTCACACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.29
Consensus pattern (20 bp):
ACTAAATTCACATGAAATTG
Found at i:103548338 original size:13 final size:13
Alignment explanation
Indices: 103548316--103548353 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
103548306 TCTCTTCATA
103548316 TCCCTAAAATCTC
1 TCCCTAAAATCTC
*
103548329 TCCTTAAAATC-C
1 TCCCTAAAATCTC
*
103548341 TCCCTAATATCTC
1 TCCCTAAAATCTC
103548354 ACCATTATCC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.29, C:0.37, G:0.00, T:0.34
Consensus pattern (13 bp):
TCCCTAAAATCTC
Found at i:103550683 original size:72 final size:72
Alignment explanation
Indices: 103550588--103550745 Score: 284
Period size: 72 Copynumber: 2.2 Consensus size: 72
103550578 TTATGGGTGG
*
103550588 TGCTATGTGCGTGATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGTGATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
103550653 GAGGGGT
66 GAGGGGT
103550660 TGCTAAGTGCGAT-ATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCC
1 TGCTAAGTGCG-TGATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCC
103550724 CGAGGGGT
65 CGAGGGGT
103550732 TGCTAAGTGC-TGAT
1 TGCTAAGTGCGTGAT
103550746 TCCCCGGTTC
Statistics
Matches: 83, Mismatches: 1, Indels: 5
0.93 0.01 0.06
Matches are distributed among these distances:
70 1 0.01
71 2 0.02
72 79 0.95
73 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGTGATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:103550791 original size:104 final size:104
Alignment explanation
Indices: 103550660--103550949 Score: 571
Period size: 104 Copynumber: 2.8 Consensus size: 104
103550650 CCCGAGGGGT
103550660 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
103550725 GAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGG
66 GAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGG
103550764 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
103550829 GAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGG
66 GAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGG
*
103550868 TGCTCAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
103550933 GAGGGGTTGCTAAGTGC
66 GAGGGGTTGCTAAGTGC
103550950 GATATCCATT
Statistics
Matches: 185, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
104 185 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (104 bp):
TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGG
Found at i:103550996 original size:71 final size:72
Alignment explanation
Indices: 103550868--103551019 Score: 243
Period size: 71 Copynumber: 2.1 Consensus size: 72
103550858 TCATTGGTGG
* * *
103550868 TGCTCAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
103550933 GAGGGGT
66 GAGGGGT
***
103550940 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
103551004 GAGGGGT
66 GAGGGGT
103551011 TGCTAAGTG
1 TGCTAAGTG
103551020 ATGATTCCCC
Statistics
Matches: 74, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
71 45 0.61
72 29 0.39
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:103557625 original size:23 final size:23
Alignment explanation
Indices: 103557584--103557627 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
103557574 TAATTTTAAT
103557584 TTTTATAATATAAAAAATAAATA
1 TTTTATAATATAAAAAATAAATA
*
103557607 TTTTAT-ATTTAAAATAATAAA
1 TTTTATAATATAAAA-AATAAA
103557628 AATAACTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (23 bp):
TTTTATAATATAAAAAATAAATA
Found at i:103557804 original size:29 final size:29
Alignment explanation
Indices: 103557760--103557829 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 29
103557750 CAAATATAAT
* *
103557760 ATTAAAAGCTATAAAAAT-ATTTAAAAAA
1 ATTAAAAACTAAAAAAATAATTTAAAAAA
*
103557788 ATCTAAAAA-TAAAAAAATAATTTGAAAAA
1 AT-TAAAAACTAAAAAAATAATTTAAAAAA
103557817 ATTAAAAACTAAA
1 ATTAAAAACTAAA
103557830 TCAAACTAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
28 16 0.44
29 20 0.56
ACGTcount: A:0.67, C:0.04, G:0.03, T:0.26
Consensus pattern (29 bp):
ATTAAAAACTAAAAAAATAATTTAAAAAA
Found at i:103561881 original size:41 final size:43
Alignment explanation
Indices: 103561739--103561892 Score: 231
Period size: 43 Copynumber: 3.6 Consensus size: 43
103561729 ATCTGTTCTT
* * * *
103561739 GTGTAAGACAACGTTTGGGATATTGGCATCAATATGTGATTAC
1 GTGTAAGACCATGTCTGGGACATTGGCATCAATATGTGATTAC
103561782 GTGTAAGACCATGTCTGGGACATTGGCATCAATATGTGATTAC
1 GTGTAAGACCATGTCTGGGACATTGGCATCAATATGTGATTAC
*
103561825 GTGTAAGACCATGTCTGGGACATTGGCATC-ATATTTGATT-C
1 GTGTAAGACCATGTCTGGGACATTGGCATCAATATGTGATTAC
* *
103561866 GTGTAAGACCCTGTCTGGGACAATGGC
1 GTGTAAGACCATGTCTGGGACATTGGC
103561893 TGTAACACCC
Statistics
Matches: 104, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
41 26 0.25
42 9 0.09
43 69 0.66
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.31
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACATTGGCATCAATATGTGATTAC
Found at i:103565014 original size:47 final size:47
Alignment explanation
Indices: 103564943--103565453 Score: 833
Period size: 47 Copynumber: 10.7 Consensus size: 47
103564933 CCCTTCGGGA
* * * * * *
103564943 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
103564990 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
103565037 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
103565084 CTTATCACATATATATACACTTTCACACTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
103565133 CTTATCACATATATATACACTTTCACCTTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
103565182 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
103565229 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
103565276 CTTATCACATATATACACTTTCACATTCATCACATCGGGCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
103565323 CTTATCACATATATACACTTTCACACTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
103565370 CTTATCACATATATATACACTTTCACAGTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
103565419 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
103565454 AGAATCCTAA
Statistics
Matches: 442, Mismatches: 18, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
47 303 0.69
49 139 0.31
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:103565021 original size:25 final size:25
Alignment explanation
Indices: 103564993--103565071 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
103564983 ACTCGGCCCT
103564993 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
103565018 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
103565040 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
103565065 ATCACAT
1 ATCACAT
103565072 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:103565492 original size:96 final size:91
Alignment explanation
Indices: 103565000--103565474 Score: 437
Period size: 96 Copynumber: 5.0 Consensus size: 91
103564990 CCTATCACAT
* * *
103565000 ATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTC
1 ATATACACTTTCACAGTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTC
* * *
103565065 ATCACATCGGCCATTAGGCCTTATCACATAT-
66 ATCACAT-AG--A--A-GCCTAATCAAATATA
* *
103565096 ATATACACTTTCACACTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACCT
1 ATATACACTTTCACAGTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACAT
* * *
103565161 TCATCACATCGGCCATTAGGCCTTATC--ACAT-
64 TCATCACAT-AG--A--A-GCCTAATCAAATATA
103565192 ATATACACTTTCAC-GTTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
1 ATATACACTTTCACAG-TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
* * *
103565256 CATCACATCGGCCATTAGGCCTTATC--ACAT-
65 CATCACAT-AG--A--A-GCCTAATCAAATATA
* * *
103565286 ATATACACTTTCACATTCATCACATCGGGCATTAGGCCTTATCACATATATACACTTTCACACTC
1 ATATACACTTTCACAGTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTC
* * *
103565351 ATCACATCGGCCATTAGGCCTTATCACATAT-
66 ATCACAT-AG--A--A-GCCTAATCAAATATA
103565382 ATATACACTTTCACAGTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTC
1 ATATACACTTTCACAGTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTC
*
103565447 ATCACATAGAATCCTAAATCAAAATATA
66 ATCACATAGAAGCCT-AATC-AAATATA
103565475 GATTTTCATG
Statistics
Matches: 352, Mismatches: 18, Indels: 21
0.90 0.05 0.05
Matches are distributed among these distances:
90 3 0.01
91 4 0.01
92 5 0.01
93 1 0.00
94 134 0.38
95 1 0.00
96 160 0.45
98 44 0.12
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (91 bp):
ATATACACTTTCACAGTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTC
ATCACATAGAAGCCTAATCAAATATA
Found at i:103565574 original size:115 final size:115
Alignment explanation
Indices: 103565438--103565663 Score: 443
Period size: 115 Copynumber: 2.0 Consensus size: 115
103565428 TATATACACT
*
103565438 TTCACATTCATCACATAGAATCCTAAATCAAAATATAGATTTTCATGTATTCACATCACAATTAT
1 TTCACATCCATCACATAGAATCCTAAATCAAAATATAGATTTTCATGTATTCACATCACAATTAT
103565503 CCAAATATACTTCACATACCACATATACTTTCACGTATACACTCTGCATG
66 CCAAATATACTTCACATACCACATATACTTTCACGTATACACTCTGCATG
103565553 TTCACATCCATCACATAGAATCCTAAATCAAAATATAGATTTTCATGTATTCACATCACAATTAT
1 TTCACATCCATCACATAGAATCCTAAATCAAAATATAGATTTTCATGTATTCACATCACAATTAT
103565618 CCAAATATACTTCACATACCACATATACTTTCACGTATACACTCTG
66 CCAAATATACTTCACATACCACATATACTTTCACGTATACACTCTG
103565664 TCTTGGCTGA
Statistics
Matches: 110, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
115 110 1.00
ACGTcount: A:0.38, C:0.25, G:0.05, T:0.33
Consensus pattern (115 bp):
TTCACATCCATCACATAGAATCCTAAATCAAAATATAGATTTTCATGTATTCACATCACAATTAT
CCAAATATACTTCACATACCACATATACTTTCACGTATACACTCTGCATG
Found at i:103575866 original size:56 final size:56
Alignment explanation
Indices: 103575779--103575914 Score: 182
Period size: 56 Copynumber: 2.4 Consensus size: 56
103575769 TAGCATTATA
* * *
103575779 CGATATGTGTGTCCAAGTAAGACCACATTTAATACGTTGGCATCAATATGCGATTT
1 CGATATGTGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCAATATGCGATTC
* * * * *
103575835 CGATATATGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTC
1 CGATATGTGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCAATATGCGATTC
* *
103575891 CGATATGTGTTTGTGAGTAAGACC
1 CGATATGTGTGTGCGAGTAAGACC
103575915 CTGTTTGGAA
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
56 69 1.00
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (56 bp):
CGATATGTGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCAATATGCGATTC
Found at i:103575932 original size:56 final size:56
Alignment explanation
Indices: 103575779--103575939 Score: 175
Period size: 56 Copynumber: 2.9 Consensus size: 56
103575769 TAGCATTATA
* * * * * * *
103575779 CGATATGTGTGTCCAAGTAAGACCACATTTAATACGTTGGCATCAATATGCGATTT
1 CGATATATGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCGATATGCGATTC
*
103575835 CGATATATGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTC
1 CGATATATGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCGATATGCGATTC
* * *
103575891 CGATATGTGTTTGTGAGTAAGACC-CTGTTTGGAATA-G-TGGCATCGATAT
1 CGATATATGTGTGCGAGTAAGACCAC-GTTT--AATATGTTGGCATCGATAT
103575940 ATAATTACAT
Statistics
Matches: 91, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
55 1 0.01
56 85 0.93
57 1 0.01
58 4 0.04
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (56 bp):
CGATATATGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCGATATGCGATTC
Done.