Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 317 of 322
Found at i:105125248 original size:13 final size:13
Alignment explanation
Indices: 105125230--105125258 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
105125220 AATAGTTATG
105125230 TGTTATTTAATTA
1 TGTTATTTAATTA
105125243 TGTTATTTAATTA
1 TGTTATTTAATTA
105125256 TGT
1 TGT
105125259 AGGTTAGCCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (13 bp):
TGTTATTTAATTA
Found at i:105131327 original size:32 final size:32
Alignment explanation
Indices: 105131288--105131352 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
105131278 TTTGCCTAAT
105131288 TCTTCAGCTTTACAAGCTCGCTCAACGAGCAC
1 TCTTCAGCTTTACAAGCTCGCTCAACGAGCAC
105131320 TCTTCAGCTTTACAAGCTCGCTCAACGAGCAC
1 TCTTCAGCTTTACAAGCTCGCTCAACGAGCAC
105131352 T
1 T
105131353 ACCATTTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.25, C:0.34, G:0.15, T:0.26
Consensus pattern (32 bp):
TCTTCAGCTTTACAAGCTCGCTCAACGAGCAC
Found at i:105131598 original size:17 final size:17
Alignment explanation
Indices: 105131576--105131609 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
105131566 CTGGAATTCG
105131576 GCTTGGAAGAAATCCCA
1 GCTTGGAAGAAATCCCA
105131593 GCTTGGAAGAAATCCCA
1 GCTTGGAAGAAATCCCA
105131610 AGTAACTCGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.18
Consensus pattern (17 bp):
GCTTGGAAGAAATCCCA
Found at i:105136455 original size:55 final size:55
Alignment explanation
Indices: 105136371--105136477 Score: 187
Period size: 55 Copynumber: 1.9 Consensus size: 55
105136361 GGATTTATTT
*
105136371 CATCATAAAGACCTTACCTTTAATGAGCCAAAAGAAATAGGCACTTTTAACAAAC
1 CATCATAAAGACCTTACCTTTAATGAGCCAAAACAAATAGGCACTTTTAACAAAC
* *
105136426 CATCATAAGGACCTTATCTTTAATGAGCCAAAACAAATAGGCACTTTTAACA
1 CATCATAAAGACCTTACCTTTAATGAGCCAAAACAAATAGGCACTTTTAACA
105136478 GACAGCAGAC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.25
Consensus pattern (55 bp):
CATCATAAAGACCTTACCTTTAATGAGCCAAAACAAATAGGCACTTTTAACAAAC
Found at i:105140794 original size:12 final size:12
Alignment explanation
Indices: 105140779--105140809 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
105140769 TTCTTTTTGC
105140779 TTTTCAAAGGCT
1 TTTTCAAAGGCT
105140791 TTTTCAAAGGCT
1 TTTTCAAAGGCT
105140803 TTTTCAA
1 TTTTCAA
105140810 GTTCTCTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGGCT
Found at i:105140908 original size:14 final size:14
Alignment explanation
Indices: 105140857--105140897 Score: 55
Period size: 16 Copynumber: 2.8 Consensus size: 14
105140847 CTCTTGCCTC
*
105140857 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-CT
105140872 TCATTTTCTTTTTCT
1 TC-TTTTCTTTTTCT
105140887 TCTTTTCTTTT
1 TCTTTTCTTTT
105140898 CTTTGTTTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 9 0.38
15 5 0.21
16 10 0.42
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.78
Consensus pattern (14 bp):
TCTTTTCTTTTTCT
Found at i:105141834 original size:11 final size:11
Alignment explanation
Indices: 105141818--105141883 Score: 96
Period size: 12 Copynumber: 5.7 Consensus size: 11
105141808 CATAAATCAC
105141818 TTTTTTTTGAA
1 TTTTTTTTGAA
105141829 TTTTTTTTGAA
1 TTTTTTTTGAA
*
105141840 TTTTTTTTCGAT
1 TTTTTTTT-GAA
105141852 TTTTTTTTGAA
1 TTTTTTTTGAA
105141863 TTTTTTTTTCGAA
1 -TTTTTTTT-GAA
105141876 TTTTTTTT
1 TTTTTTTT
105141884 TCAAACTTGT
Statistics
Matches: 50, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
11 21 0.42
12 26 0.52
13 3 0.06
ACGTcount: A:0.14, C:0.03, G:0.08, T:0.76
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:105141835 original size:12 final size:12
Alignment explanation
Indices: 105141818--105141884 Score: 102
Period size: 11 Copynumber: 5.7 Consensus size: 12
105141808 CATAAATCAC
105141818 TTTTTTTTGAA-
1 TTTTTTTTGAAT
105141829 TTTTTTTTGAAT
1 TTTTTTTTGAAT
*
105141841 TTTTTTTCG-AT
1 TTTTTTTTGAAT
105141852 TTTTTTTTGAAT
1 TTTTTTTTGAAT
105141864 TTTTTTTTCGAAT
1 TTTTTTTT-GAAT
105141877 TTTTTTTT
1 TTTTTTTT
105141885 CAAACTTGTA
Statistics
Matches: 51, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
11 21 0.41
12 18 0.35
13 12 0.24
ACGTcount: A:0.13, C:0.03, G:0.07, T:0.76
Consensus pattern (12 bp):
TTTTTTTTGAAT
Found at i:105141855 original size:23 final size:24
Alignment explanation
Indices: 105141818--105141884 Score: 102
Period size: 23 Copynumber: 2.8 Consensus size: 24
105141808 CATAAATCAC
*
105141818 TTTTTTTT-GAATTTTTTTTGAA-
1 TTTTTTTTCGATTTTTTTTTGAAT
105141840 TTTTTTTTCGATTTTTTTTTGAAT
1 TTTTTTTTCGATTTTTTTTTGAAT
105141864 TTTTTTTTCGAATTTTTTTTT
1 TTTTTTTTCG-ATTTTTTTTT
105141885 CAAACTTGTA
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
22 8 0.20
23 13 0.32
24 10 0.24
25 10 0.24
ACGTcount: A:0.13, C:0.03, G:0.07, T:0.76
Consensus pattern (24 bp):
TTTTTTTTCGATTTTTTTTTGAAT
Found at i:105148002 original size:82 final size:84
Alignment explanation
Indices: 105147860--105148028 Score: 306
Period size: 82 Copynumber: 2.0 Consensus size: 84
105147850 TATATATATA
105147860 TGTATATTTATTCATTCCAATCAGCATCAATACATACACATTATGACCATTTAAAATAATACCCA
1 TGTATATTTATTCATTCCAATCAG-A-CAATACATACACATTATGACCATTTAAAATAATACCCA
105147925 CTACATGCTTAATGACTTACT
64 CTACATGCTTAATGACTTACT
105147946 TGTATATTTATTCATTCCAATCAG-C-ATACATACACATTATGACCATTTAAAATAATACCCACT
1 TGTATATTTATTCATTCCAATCAGACAATACATACACATTATGACCATTTAAAATAATACCCACT
105148009 ACATGCTTAATGACTTACT
66 ACATGCTTAATGACTTACT
105148028 T
1 T
105148029 TATGTTGGGT
Statistics
Matches: 83, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
82 58 0.70
83 1 0.01
86 24 0.29
ACGTcount: A:0.37, C:0.22, G:0.06, T:0.36
Consensus pattern (84 bp):
TGTATATTTATTCATTCCAATCAGACAATACATACACATTATGACCATTTAAAATAATACCCACT
ACATGCTTAATGACTTACT
Found at i:105153905 original size:46 final size:46
Alignment explanation
Indices: 105153838--105153931 Score: 188
Period size: 46 Copynumber: 2.0 Consensus size: 46
105153828 TGCACATAGC
105153838 AACCTCATCAGCTACACACTCCCGGGCATACCTACTAAGTCTTACG
1 AACCTCATCAGCTACACACTCCCGGGCATACCTACTAAGTCTTACG
105153884 AACCTCATCAGCTACACACTCCCGGGCATACCTACTAAGTCTTACG
1 AACCTCATCAGCTACACACTCCCGGGCATACCTACTAAGTCTTACG
105153930 AA
1 AA
105153932 TTCATGTTCG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (46 bp):
AACCTCATCAGCTACACACTCCCGGGCATACCTACTAAGTCTTACG
Found at i:105156063 original size:27 final size:27
Alignment explanation
Indices: 105156033--105156210 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
105156023 ATATTGAGCC
* *
105156033 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
105156060 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
105156087 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
105156115 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
105156142 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
105156169 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
105156196 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
105156211 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
27 102 0.80
28 25 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:105156172 original size:82 final size:81
Alignment explanation
Indices: 105156054--105156209 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
105156044 TGCTATATAA
* * *
105156054 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGCA
105156119 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
105156136 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
105156200 CACTTAGTGC
65 CACTTAGTGC
105156210 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 19 0.29
82 47 0.71
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:105159728 original size:30 final size:30
Alignment explanation
Indices: 105159694--105159790 Score: 99
Period size: 30 Copynumber: 3.2 Consensus size: 30
105159684 AAAACTAAAA
105159694 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
105159724 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
*
105159754 TGAGCTAAGGTTTAGCTCGTGAGCTAAA-T
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
105159783 ATGAGCTA
1 -TGAGCTA
105159791 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 13, Indels: 6
0.73 0.19 0.09
Matches are distributed among these distances:
29 3 0.06
30 45 0.88
31 3 0.06
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:105163893 original size:20 final size:20
Alignment explanation
Indices: 105163861--105163918 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
105163851 TAGCTCGTCC
* *
105163861 AGCTCACAACCAGCTCATCA
1 AGCTCACATCCAGCTCAACA
**
105163881 AGCTCAGTTCCAGCTCAACA
1 AGCTCACATCCAGCTCAACA
*
105163901 AGTTCACATCCAGCTCAA
1 AGCTCACATCCAGCTCAA
105163919 TTCCAGGTCA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.33, C:0.36, G:0.12, T:0.19
Consensus pattern (20 bp):
AGCTCACATCCAGCTCAACA
Found at i:105167666 original size:10 final size:10
Alignment explanation
Indices: 105167647--105167681 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
105167637 AAACTCGGTT
105167647 GAGCTCAAAC
1 GAGCTCAAAC
*
105167657 GAGCTGAAAC
1 GAGCTCAAAC
*
105167667 GAGCTCAAAT
1 GAGCTCAAAC
105167677 GAGCT
1 GAGCT
105167682 GAGTTGAGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.37, C:0.23, G:0.26, T:0.14
Consensus pattern (10 bp):
GAGCTCAAAC
Found at i:105167690 original size:20 final size:20
Alignment explanation
Indices: 105167644--105167691 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
105167634 AGTAAACTCG
105167644 GTTGAGCTCAAACGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
*** *
105167664 AACGAGCTCAAATGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
105167684 GTTGAGCT
1 GTTGAGCT
105167692 GGACGGAGCT
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.31, C:0.19, G:0.29, T:0.21
Consensus pattern (20 bp):
GTTGAGCTCAAACGAGCTGA
Found at i:105174305 original size:22 final size:22
Alignment explanation
Indices: 105174254--105174319 Score: 80
Period size: 21 Copynumber: 3.0 Consensus size: 22
105174244 GGTATTTGGG
* *
105174254 AATTGGTTCGAAATAGTATGG-
1 AATTGGTACGAAATGGTATGGT
105174275 AATTGGTACGAAATGGTATGGT
1 AATTGGTACGAAATGGTATGGT
* *
105174297 ATTTGGTACGAATTGGTAATGGT
1 AATTGGTACGAAATGGT-ATGGT
105174320 TCAAAAGGGC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
21 19 0.49
22 15 0.38
23 5 0.13
ACGTcount: A:0.30, C:0.05, G:0.30, T:0.35
Consensus pattern (22 bp):
AATTGGTACGAAATGGTATGGT
Found at i:105177695 original size:22 final size:22
Alignment explanation
Indices: 105177641--105177706 Score: 80
Period size: 21 Copynumber: 3.0 Consensus size: 22
105177631 GGTATTTGGG
*
105177641 AATTGGTTCGAAATAGTATGG-
1 AATTGGTTCGAAATGGTATGGT
105177662 AATTGGTTCGAAATGGTATGGT
1 AATTGGTTCGAAATGGTATGGT
* * *
105177684 ATTTGGTACGAATTGGTAATGGT
1 AATTGGTTCGAAATGGT-ATGGT
105177707 TCAAAGAGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
21 20 0.51
22 14 0.36
23 5 0.13
ACGTcount: A:0.29, C:0.05, G:0.30, T:0.36
Consensus pattern (22 bp):
AATTGGTTCGAAATGGTATGGT
Found at i:105180342 original size:21 final size:21
Alignment explanation
Indices: 105180316--105180378 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
105180306 TTGGTATTTG
105180316 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
105180337 GGAATTGGTATGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
* *
105180358 GGTATTTGGTACGAATTGGTA
1 GG-AATTGGTACGAAATGGTA
105180379 ACGGTTCAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 22 0.59
22 15 0.41
ACGTcount: A:0.30, C:0.03, G:0.33, T:0.33
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:105191021 original size:12 final size:12
Alignment explanation
Indices: 105191004--105191039 Score: 56
Period size: 11 Copynumber: 3.0 Consensus size: 12
105190994 AGACCGTATG
105191004 CAATTTTTTTTT
1 CAATTTTTTTTT
105191016 CAA-TTTTTTTT
1 CAATTTTTTTTT
105191027 CAAATTTTTTTTT
1 C-AATTTTTTTTT
105191040 TCGAACTCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 9 0.41
12 5 0.23
13 8 0.36
ACGTcount: A:0.19, C:0.08, G:0.00, T:0.72
Consensus pattern (12 bp):
CAATTTTTTTTT
Found at i:105191024 original size:11 final size:12
Alignment explanation
Indices: 105191008--105191038 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
105190998 CGTATGCAAT
105191008 TTTTTTTTC-AA
1 TTTTTTTTCAAA
105191019 TTTTTTTTCAAA
1 TTTTTTTTCAAA
105191031 TTTTTTTT
1 TTTTTTTT
105191039 TTCGAACTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 9 0.47
12 10 0.53
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTTTTTTCAAA
Found at i:105191380 original size:21 final size:21
Alignment explanation
Indices: 105191356--105191399 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
105191346 TTGGTATTTG
*
105191356 GGAATTAGTTCGAAATAGTAT
1 GGAATTAGTACGAAATAGTAT
* *
105191377 GGAATTGGTACGAAATGGTAT
1 GGAATTAGTACGAAATAGTAT
105191398 GG
1 GG
105191400 TATTTGGTAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.05, G:0.32, T:0.30
Consensus pattern (21 bp):
GGAATTAGTACGAAATAGTAT
Found at i:105191409 original size:22 final size:22
Alignment explanation
Indices: 105191366--105191423 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
105191356 GGAATTAGTT
*
105191366 CGAAATAGTATGG-AATTGGTA
1 CGAAATGGTATGGTAATTGGTA
*
105191387 CGAAATGGTATGGTATTTGGTA
1 CGAAATGGTATGGTAATTGGTA
*
105191409 CGAATTGGTAATGGT
1 CGAAATGGT-ATGGT
105191424 TCAAAAGAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
21 12 0.38
22 15 0.47
23 5 0.16
ACGTcount: A:0.31, C:0.05, G:0.31, T:0.33
Consensus pattern (22 bp):
CGAAATGGTATGGTAATTGGTA
Found at i:105192790 original size:20 final size:20
Alignment explanation
Indices: 105192744--105192790 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
105192734 AGCTTGTTTC
*
105192744 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* * *
105192764 CAACTCATTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
105192784 CAGCTCA
1 CAGCTCA
105192791 ATCTTAACCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.34, G:0.13, T:0.23
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:105195938 original size:19 final size:19
Alignment explanation
Indices: 105195914--105195953 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
105195904 TTTGAGATGT
105195914 TCTATAATAGTTTAAATGC
1 TCTATAATAGTTTAAATGC
105195933 TCTATAATAGTTTAAATGC
1 TCTATAATAGTTTAAATGC
105195952 TC
1 TC
105195954 ACACAAGGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.42
Consensus pattern (19 bp):
TCTATAATAGTTTAAATGC
Found at i:105200978 original size:30 final size:31
Alignment explanation
Indices: 105200897--105200979 Score: 116
Period size: 31 Copynumber: 2.7 Consensus size: 31
105200887 TCAGTCTCGA
*
105200897 CATAT-ACTGGGCTTAAGCCTTTTCATAAAT
1 CATATCACTGGGCTAAAGCCTTTTCATAAAT
* *
105200927 CATATCATTGGGCCAAAGCCTTTTCATAAAT
1 CATATCACTGGGCTAAAGCCTTTTCATAAAT
*
105200958 CATATCACT-GGCTGAAGCCTTT
1 CATATCACTGGGCTAAAGCCTTT
105200980 ACTGTAAGCG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
30 16 0.35
31 30 0.65
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (31 bp):
CATATCACTGGGCTAAAGCCTTTTCATAAAT
Found at i:105201219 original size:24 final size:25
Alignment explanation
Indices: 105201192--105201267 Score: 102
Period size: 24 Copynumber: 3.1 Consensus size: 25
105201182 CCCTAGCCTC
105201192 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
*
105201216 TTTTGATAAACTGGGG-AAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
* * *
105201240 TTTCAGTAAACTGGGGCATAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
105201265 TTT
1 TTT
105201268 AGCACTTCCT
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
24 27 0.60
25 18 0.40
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:105202139 original size:27 final size:27
Alignment explanation
Indices: 105202077--105202142 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 27
105202067 GGGCATATTC
*
105202077 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCTTACAGGGGTATTACG
*
105202104 GTCACTTTACCTTACAGGGGCT-TTACG
1 GTCATTTTACCTTACAGGGG-TATTACG
*
105202131 GTCTTTTTACCT
1 GTCATTTTACCT
105202143 ATTAGGGGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 33 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCTTACAGGGGTATTACG
Found at i:105202226 original size:27 final size:27
Alignment explanation
Indices: 105202193--105202395 Score: 119
Period size: 27 Copynumber: 7.4 Consensus size: 27
105202183 GGTAATCTAC
*
105202193 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *
105202220 AAACCAATGGTATTTCTA-TAATTTTTAA
1 AAACCAAGGGTATTTC-AGTAA-TTTTAT
*
105202248 AAAGTCAAGGGTATTTCTA-TAATTTTAT
1 AAA-CCAAGGGTATTTC-AGTAATTTTAT
* ** *
105202276 AAATC-AGTGGTATTTTGGTAATTTTAC
1 AAACCAAG-GGTATTTCAGTAATTTTAT
** * * *
105202303 AAATTGAA-GGTATTTCGGTAATTTCAC
1 AAA-CCAAGGGTATTTCAGTAATTTTAT
** * *
105202330 AAACC-AGTGGTATTTTGGTAGTTTTGT
1 AAACCAAG-GGTATTTCAGTAATTTTAT
* *
105202357 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *
105202384 AAATCGAGGGTA
1 AAACCAAGGGTA
105202396 AAACGGTAAT
Statistics
Matches: 143, Mismatches: 23, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
25 1 0.01
26 2 0.01
27 104 0.73
28 19 0.13
29 17 0.12
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTAT
Found at i:105202369 original size:54 final size:55
Alignment explanation
Indices: 105202180--105202380 Score: 164
Period size: 54 Copynumber: 3.7 Consensus size: 55
105202170 TACAAGGGTG
* *** *
105202180 TTTGGTAA-TCTACAAA-CCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTAT
1 TTTGGTAATTTTACAAATCCAAGGGTATTTCAGTAATTTCACAAACCAGTGGTAT
* * * * *
105202233 TTCT-ATAATTTTTAAAAAGT-CAAGGGTATTTCTA-TAATTTTATAAATCAGTGGTAT
1 TT-TGGTAA-TTTTACAAA-TCCAAGGGTATTTC-AGTAATTTCACAAACCAGTGGTAT
** *
105202289 TTTGGTAATTTTACAAATTGAA-GGTATTTCGGTAATTTCACAAACCAGTGGTAT
1 TTTGGTAATTTTACAAATCCAAGGGTATTTCAGTAATTTCACAAACCAGTGGTAT
* ** *
105202343 TTTGGTAGTTTTGTAAA-CCAAGGGTATTTTAGTAATTT
1 TTTGGTAATTTTACAAATCCAAGGGTATTTCAGTAATTT
105202381 TGTAAATCGA
Statistics
Matches: 118, Mismatches: 20, Indels: 19
0.75 0.13 0.12
Matches are distributed among these distances:
53 7 0.06
54 57 0.48
55 17 0.14
56 36 0.31
57 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.17, T:0.41
Consensus pattern (55 bp):
TTTGGTAATTTTACAAATCCAAGGGTATTTCAGTAATTTCACAAACCAGTGGTAT
Found at i:105202404 original size:27 final size:27
Alignment explanation
Indices: 105202374--105202530 Score: 242
Period size: 27 Copynumber: 5.8 Consensus size: 27
105202364 GGGTATTTTA
*
105202374 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
105202401 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
105202428 GTAATTCTGTAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
105202455 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
105202482 ATAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
105202509 GTAATTCTGTAAATTGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
105202531 CTTTGGTAAT
Statistics
Matches: 118, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 118 1.00
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:105202430 original size:81 final size:81
Alignment explanation
Indices: 105202345--105202521 Score: 228
Period size: 81 Copynumber: 2.2 Consensus size: 81
105202335 AGTGGTATTT
* * *** * * *
105202345 TGGTAGTTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTA
1 TGGTAATTCTGTAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTA
105202410 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
*** * *
105202426 TGGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTG
1 TGGTAATTCTGTAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTA
105202491 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
*
105202507 CGGTAATTCTGTAAA
1 TGGTAATTCTGTAAA
105202522 TTGAGGGTAC
Statistics
Matches: 82, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 82 1.00
ACGTcount: A:0.37, C:0.08, G:0.23, T:0.32
Consensus pattern (81 bp):
TGGTAATTCTGTAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTA
TAAATCGAGGGTAAAA
Found at i:105202522 original size:81 final size:81
Alignment explanation
Indices: 105202374--105202530 Score: 269
Period size: 81 Copynumber: 1.9 Consensus size: 81
105202364 GGGTATTTTA
* * * *
105202374 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTA
1 GTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTA
105202439 AATTGAGGGTAAAATG
66 AATTGAGGGTAAAATG
*
105202455 GTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTA
1 GTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTA
105202520 AATTGAGGGTA
66 AATTGAGGGTA
105202531 CTTTGGTAAT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 71 1.00
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.30
Consensus pattern (81 bp):
GTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTA
AATTGAGGGTAAAATG
Found at i:105202538 original size:81 final size:81
Alignment explanation
Indices: 105202363--105202541 Score: 268
Period size: 81 Copynumber: 2.2 Consensus size: 81
105202353 TTGTAAACCA
* * * * * *
105202363 AGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATG
1 AGGGTAATTTGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACG
105202428 GTAATTCTGTAAATTG
66 GTAATTCTGTAAATTG
** *
105202444 AGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACG
1 AGGGTAATTTGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACG
105202509 GTAATTCTGTAAATTG
66 GTAATTCTGTAAATTG
*
105202525 AGGGTACTTTGGTAATT
1 AGGGTAATTTGGTAATT
105202542 TTACAAATTG
Statistics
Matches: 86, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 86 1.00
ACGTcount: A:0.36, C:0.07, G:0.24, T:0.32
Consensus pattern (81 bp):
AGGGTAATTTGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACG
GTAATTCTGTAAATTG
Found at i:105210675 original size:22 final size:22
Alignment explanation
Indices: 105210647--105210690 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
105210637 TTTTGAACCA
*
105210647 TTACCATTTCGTACCAAATCCC
1 TTACCATTTAGTACCAAATCCC
*
105210669 TTACCATTTAGTACCAATTCCC
1 TTACCATTTAGTACCAAATCCC
105210691 AAATACCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.27, C:0.34, G:0.05, T:0.34
Consensus pattern (22 bp):
TTACCATTTAGTACCAAATCCC
Found at i:105213780 original size:43 final size:43
Alignment explanation
Indices: 105213729--105213833 Score: 165
Period size: 43 Copynumber: 2.4 Consensus size: 43
105213719 AGTTTAATGT
*
105213729 ATTGGCACTAAGTGTGCGATACAATTATAGCCTCGGCTAATTA
1 ATTGGCACTAAGTGTGCGATACAATTATAGCCTCAGCTAATTA
* *
105213772 ATTGGCACTAAGTGTGCGATGCAATTATAGCTTCAGCTAATTA
1 ATTGGCACTAAGTGTGCGATACAATTATAGCCTCAGCTAATTA
* *
105213815 ATCGGCACTAAGTTTGCGA
1 ATTGGCACTAAGTGTGCGA
105213834 GTTCATTGAA
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (43 bp):
ATTGGCACTAAGTGTGCGATACAATTATAGCCTCAGCTAATTA
Found at i:105216442 original size:130 final size:130
Alignment explanation
Indices: 105216209--105216468 Score: 502
Period size: 130 Copynumber: 2.0 Consensus size: 130
105216199 GCTTGTAGTC
105216209 CAATCATAAGCATAACAGAACAGGTATAACGCATGTGAATGGACAGATTCAGATTACCATGCAAA
1 CAATCATAAGCATAACAGAACAGGTATAACGCATGTGAATGGACAGATTCAGATTACCATGCAAA
105216274 CAATCTAATTTACTCACCACTGCCTCGTCAAATATTTGAAACAAAGATGGACATGTTTTAAGGCA
66 CAATCTAATTTACTCACCACTGCCTCGTCAAATATTTGAAACAAAGATGGACATGTTTTAAGGCA
* *
105216339 CAATCATAAGCATAATAGAACAGGTATAATGCATGTGAATGGACAGATTCAGATTACCATGCAAA
1 CAATCATAAGCATAACAGAACAGGTATAACGCATGTGAATGGACAGATTCAGATTACCATGCAAA
105216404 CAATCTAATTTACTCACCACTGCCTCGTCAAATATTTGAAACAAAGATGGACATGTTTTAAGGCA
66 CAATCTAATTTACTCACCACTGCCTCGTCAAATATTTGAAACAAAGATGGACATGTTTTAAGGCA
105216469 TTCAGTCGTC
Statistics
Matches: 128, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
130 128 1.00
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.25
Consensus pattern (130 bp):
CAATCATAAGCATAACAGAACAGGTATAACGCATGTGAATGGACAGATTCAGATTACCATGCAAA
CAATCTAATTTACTCACCACTGCCTCGTCAAATATTTGAAACAAAGATGGACATGTTTTAAGGCA
Found at i:105217459 original size:23 final size:22
Alignment explanation
Indices: 105217407--105217459 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
105217397 TCCACGTCTT
*
105217407 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
105217429 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
105217452 TTTCTTTT
1 TTTCTTTT
105217460 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:105217469 original size:18 final size:17
Alignment explanation
Indices: 105217436--105217483 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 17
105217426 TAATTCATTT
105217436 TCTCTTCTTT-CT-TCAA
1 TCTCTT-TTTCCTCTCAA
*
105217452 TTTCTTTTTCACTCTCAA
1 TCTCTTTTTC-CTCTCAA
105217470 TCTCTTTTTCCTCT
1 TCTCTTTTTCCTCT
105217484 TTTTCATTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 3 0.11
16 5 0.19
17 6 0.22
18 13 0.48
ACGTcount: A:0.10, C:0.31, G:0.00, T:0.58
Consensus pattern (17 bp):
TCTCTTTTTCCTCTCAA
Found at i:105217484 original size:27 final size:27
Alignment explanation
Indices: 105217454--105217509 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
105217444 TTCTTCAATT
105217454 TCTTTTTCACTCTCAATCTCTTTTTCC
1 TCTTTTTCACTCTCAATCTCTTTTTCC
* ** *
105217481 TCTTTTTCATTCTCTTTTTCTTTTTCC
1 TCTTTTTCACTCTCAATCTCTTTTTCC
105217508 TC
1 TC
105217510 ACTTGTTTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.07, C:0.30, G:0.00, T:0.62
Consensus pattern (27 bp):
TCTTTTTCACTCTCAATCTCTTTTTCC
Found at i:105226959 original size:30 final size:30
Alignment explanation
Indices: 105226925--105227006 Score: 85
Period size: 30 Copynumber: 2.7 Consensus size: 30
105226915 TAAACTAAAA
105226925 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
105226955 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
*
105226985 TGAGCTAAGGTTTAGCTCGTGA
1 TGAGCTAAGCTTTAGCTCGTGA
105227007 CTTGAAAGTG
Statistics
Matches: 38, Mismatches: 12, Indels: 4
0.70 0.22 0.07
Matches are distributed among these distances:
29 2 0.05
30 33 0.87
31 3 0.08
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:105230836 original size:49 final size:49
Alignment explanation
Indices: 105230783--105231072 Score: 512
Period size: 49 Copynumber: 5.9 Consensus size: 49
105230773 TACATGATAG
105230783 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
105230832 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
105230881 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
105230930 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * * *
105230977 TATATGTGATAAGGCCGAAAGGCCAATGTGATGAGTGTGAAAGTGTATATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
105231028 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
105231073 CAAAGATGAA
Statistics
Matches: 229, Mismatches: 8, Indels: 6
0.94 0.03 0.02
Matches are distributed among these distances:
47 43 0.19
49 143 0.62
51 43 0.19
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
Found at i:105239225 original size:19 final size:19
Alignment explanation
Indices: 105239201--105239240 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
105239191 AGCTCCCATG
*
105239201 TAGCTCCACACCAGCTCAT
1 TAGCTCCACACCAACTCAT
* *
105239220 TAGCTCGAGACCAACTCAT
1 TAGCTCCACACCAACTCAT
105239239 TA
1 TA
105239241 TCAGCTCCCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.30, C:0.35, G:0.12, T:0.23
Consensus pattern (19 bp):
TAGCTCCACACCAACTCAT
Found at i:105240503 original size:14 final size:14
Alignment explanation
Indices: 105240481--105240528 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
105240471 ACCTAAACCG
* *
105240481 ACCAATTTGTTCAT
1 ACCATTTTGTTCCT
105240495 ACCATTTTGTTCCT
1 ACCATTTTGTTCCT
* *
105240509 ACCCTTTCGTTCCT
1 ACCATTTTGTTCCT
105240523 ACCATT
1 ACCATT
105240529 CCATTCGTAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.19, C:0.31, G:0.06, T:0.44
Consensus pattern (14 bp):
ACCATTTTGTTCCT
Found at i:105241042 original size:69 final size:69
Alignment explanation
Indices: 105240931--105241190 Score: 520
Period size: 69 Copynumber: 3.8 Consensus size: 69
105240921 AAAAGAAAAA
105240931 AAATTTACTTCGTGAAATTCAAGTATTATATTGTAATTATCATTTTAGTAGTTTATTAAATATAT
1 AAATTTACTTCGTGAAATTCAAGTATTATATTGTAATTATCATTTTAGTAGTTTATTAAATATAT
105240996 ATAT
66 ATAT
105241000 AAATTTACTTCGTGAAATTCAAGTATTATATTGTAATTATCATTTTAGTAGTTTATTAAATATAT
1 AAATTTACTTCGTGAAATTCAAGTATTATATTGTAATTATCATTTTAGTAGTTTATTAAATATAT
105241065 ATAT
66 ATAT
105241069 AAATTTACTTCGTGAAATTCAAGTATTATATTGTAATTATCATTTTAGTAGTTTATTAAATATAT
1 AAATTTACTTCGTGAAATTCAAGTATTATATTGTAATTATCATTTTAGTAGTTTATTAAATATAT
105241134 ATAT
66 ATAT
105241138 AAATTTACTTCGTGAAATTCAAGTATTATATTGTAATTATCATTTTAGTAGTT
1 AAATTTACTTCGTGAAATTCAAGTATTATATTGTAATTATCATTTTAGTAGTT
105241191 ATAAAAAAAG
Statistics
Matches: 191, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 191 1.00
ACGTcount: A:0.37, C:0.06, G:0.09, T:0.48
Consensus pattern (69 bp):
AAATTTACTTCGTGAAATTCAAGTATTATATTGTAATTATCATTTTAGTAGTTTATTAAATATAT
ATAT
Found at i:105241235 original size:11 final size:11
Alignment explanation
Indices: 105241208--105241250 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
105241198 AAGTATATTA
105241208 TAAAAAAAATT
1 TAAAAAAAATT
**
105241219 CGAAAAAAATT
1 TAAAAAAAATT
**
105241230 TAAAAAAAAAA
1 TAAAAAAAATT
105241241 TAAAAAAAAT
1 TAAAAAAAAT
105241251 AGAGGTAATT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (11 bp):
TAAAAAAAATT
Found at i:105243378 original size:12 final size:12
Alignment explanation
Indices: 105243359--105243392 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
105243349 AGAAAGAAAA
105243359 GAGTGAAAAGGT
1 GAGTGAAAAGGT
* *
105243371 GTGTGAAAAAGT
1 GAGTGAAAAGGT
105243383 GAGTGAAAAG
1 GAGTGAAAAG
105243393 AAATGAGGGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.38, T:0.18
Consensus pattern (12 bp):
GAGTGAAAAGGT
Found at i:105243394 original size:38 final size:36
Alignment explanation
Indices: 105243351--105243430 Score: 90
Period size: 38 Copynumber: 2.2 Consensus size: 36
105243341 GAATGGAAAG
* * *
105243351 AAAGAAAAGAGTGAAA-AGGTGTGTGAAAAAGTGAGTGA
1 AAAGAAAAGAGGGAAACAAGT-TGT-AAAAA-TGAGAGA
*
105243389 AAAGAAATGAGGGAAACAAGTTGTAAAAATGAGAGA
1 AAAGAAAAGAGGGAAACAAGTTGTAAAAATGAGAGA
105243425 AAAGAA
1 AAAGAA
105243431 TAAAGATCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
36 12 0.32
37 5 0.14
38 17 0.46
39 3 0.08
ACGTcount: A:0.55, C:0.01, G:0.30, T:0.14
Consensus pattern (36 bp):
AAAGAAAAGAGGGAAACAAGTTGTAAAAATGAGAGA
Found at i:105244679 original size:10 final size:10
Alignment explanation
Indices: 105244646--105244694 Score: 55
Period size: 10 Copynumber: 4.8 Consensus size: 10
105244636 AAAAAGGAAT
*
105244646 GAGCTGAAAC
1 GAGCTCAAAC
105244656 GAGCT-AAATTC
1 GAGCTCAAA--C
105244667 GAGCTCAAAC
1 GAGCTCAAAC
*
105244677 GAGCTAAAAC
1 GAGCTCAAAC
105244687 GAGCTCAA
1 GAGCTCAA
105244695 GTGAGCTGAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 3 0.09
10 22 0.65
11 6 0.18
12 3 0.09
ACGTcount: A:0.41, C:0.22, G:0.22, T:0.14
Consensus pattern (10 bp):
GAGCTCAAAC
Found at i:105244701 original size:20 final size:21
Alignment explanation
Indices: 105244646--105244694 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
105244636 AAAAAGGAAT
* *
105244646 GAGCTGAAACGAGCTAAATTC
1 GAGCTCAAACGAGCTAAATAC
105244667 GAGCTCAAACGAGCTAAA-AC
1 GAGCTCAAACGAGCTAAATAC
105244687 GAGCTCAA
1 GAGCTCAA
105244695 GTGAGCTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 9 0.35
21 17 0.65
ACGTcount: A:0.41, C:0.22, G:0.22, T:0.14
Consensus pattern (21 bp):
GAGCTCAAACGAGCTAAATAC
Found at i:105249656 original size:32 final size:32
Alignment explanation
Indices: 105249615--105249676 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
105249605 CATCTATTTT
105249615 CATTGTTCAACTCTTTGACAACACGAAAAATC
1 CATTGTTCAACTCTTTGACAACACGAAAAATC
*
105249647 CATTGTTCAACTCTTTGACAACATGAAAAA
1 CATTGTTCAACTCTTTGACAACACGAAAAA
105249677 ACCAAAAGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.29
Consensus pattern (32 bp):
CATTGTTCAACTCTTTGACAACACGAAAAATC
Found at i:105255595 original size:9 final size:9
Alignment explanation
Indices: 105255581--105255605 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
105255571 ACCAATAACA
105255581 CCCAAAACG
1 CCCAAAACG
105255590 CCCAAAACG
1 CCCAAAACG
105255599 CCCAAAA
1 CCCAAAA
105255606 TCTGATACCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.48, C:0.44, G:0.08, T:0.00
Consensus pattern (9 bp):
CCCAAAACG
Found at i:105273598 original size:15 final size:15
Alignment explanation
Indices: 105273578--105273619 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
105273568 TATCTCTTGA
105273578 TTTTAATTTCAATCT
1 TTTTAATTTCAATCT
105273593 TTTTAATTT--A-CT
1 TTTTAATTTCAATCT
105273605 TGTTTAATTTCAATC
1 T-TTTAATTTCAATC
105273620 ATTTACTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
12 3 0.13
13 9 0.39
15 10 0.43
16 1 0.04
ACGTcount: A:0.26, C:0.12, G:0.02, T:0.60
Consensus pattern (15 bp):
TTTTAATTTCAATCT
Found at i:105276328 original size:16 final size:16
Alignment explanation
Indices: 105276307--105276348 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
105276297 TGTTATTTAG
105276307 GCTTAATGCCTAGCAA
1 GCTTAATGCCTAGCAA
*
105276323 GCTTAATGCCTAGCAG
1 GCTTAATGCCTAGCAA
*
105276339 GCTTCATGCC
1 GCTTAATGCC
105276349 GATGTTATTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (16 bp):
GCTTAATGCCTAGCAA
Found at i:105276365 original size:38 final size:39
Alignment explanation
Indices: 105276323--105276420 Score: 153
Period size: 38 Copynumber: 2.5 Consensus size: 39
105276313 TGCCTAGCAA
*
105276323 GCTTAATGCCTAGCAGGCTTCATGCCGATGT-TATTCAG
1 GCTTAGTGCCTAGCAGGCTTCATGCCGATGTATATTCAG
*
105276361 GCTTAGTGCCTAGCAGGCTTCGTGCCGATGTGATATTCAG
1 GCTTAGTGCCTAGCAGGCTTCATGCCGATGT-ATATTCAG
*
105276401 GCTTAGTGCCTAGCAAGCTT
1 GCTTAGTGCCTAGCAGGCTT
105276421 TGAGCCGGTG
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
38 29 0.53
40 26 0.47
ACGTcount: A:0.19, C:0.23, G:0.27, T:0.31
Consensus pattern (39 bp):
GCTTAGTGCCTAGCAGGCTTCATGCCGATGTATATTCAG
Found at i:105280644 original size:14 final size:15
Alignment explanation
Indices: 105280627--105280660 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
105280617 GAATATGGTA
105280627 AAATA-TTAAAAAAT
1 AAATATTTAAAAAAT
105280641 AAATATTTAAAAAAT
1 AAATATTTAAAAAAT
*
105280656 TAATA
1 AAATA
105280661 ATAGTTGAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
AAATATTTAAAAAAT
Found at i:105282178 original size:4 final size:4
Alignment explanation
Indices: 105282169--105282210 Score: 50
Period size: 4 Copynumber: 10.8 Consensus size: 4
105282159 AACATCAATA
** *
105282169 AAAT AAAT AAAT AAAT ACCT TAA- AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
105282211 ATCCACATGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
3 2 0.06
4 29 0.94
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:105283769 original size:9 final size:9
Alignment explanation
Indices: 105283710--105283789 Score: 52
Period size: 9 Copynumber: 8.4 Consensus size: 9
105283700 ATAATTACAG
105283710 AAAAATATTT
1 AAAAAT-TTT
*
105283720 AAAATTTATT
1 AAAAATT-TT
* *
105283730 AATAAATATA
1 AA-AAATTTT
**
105283740 AAAAATTAC
1 AAAAATTTT
*
105283749 AAAAAGTATT
1 AAAAA-TTTT
105283759 AAAAATTTT
1 AAAAATTTT
*
105283768 AAAAATTGT
1 AAAAATTTT
*
105283777 AAAAATTGT
1 AAAAATTTT
105283786 AAAA
1 AAAA
105283790 CTTACACATT
Statistics
Matches: 55, Mismatches: 12, Indels: 7
0.74 0.16 0.09
Matches are distributed among these distances:
9 34 0.62
10 18 0.33
11 3 0.05
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (9 bp):
AAAAATTTT
Found at i:105283771 original size:19 final size:18
Alignment explanation
Indices: 105283710--105283789 Score: 63
Period size: 18 Copynumber: 4.2 Consensus size: 18
105283700 ATAATTACAG
*
105283710 AAAAATATTTAAAATTTATT
1 AAAAATA-TTAAAAATT-TT
* **
105283730 AATAAATATAAAAAATTAC
1 AA-AAATATTAAAAATTTT
105283749 AAAAAGTATTAAAAATTTT
1 AAAAA-TATTAAAAATTTT
*
105283768 AAAAAT-TGTAAAAATTGT
1 AAAAATAT-TAAAAATTTT
105283786 AAAA
1 AAAA
105283790 CTTACACATT
Statistics
Matches: 49, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
17 1 0.02
18 17 0.35
19 17 0.35
20 9 0.18
21 5 0.10
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (18 bp):
AAAAATATTAAAAATTTT
Found at i:105283780 original size:8 final size:9
Alignment explanation
Indices: 105283758--105283789 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
105283748 CAAAAAGTAT
*
105283758 TAAAAATTT
1 TAAAAATTG
105283767 TAAAAATTG
1 TAAAAATTG
105283776 TAAAAATTG
1 TAAAAATTG
105283785 TAAAA
1 TAAAA
105283790 CTTACACATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.34
Consensus pattern (9 bp):
TAAAAATTG
Found at i:105283950 original size:10 final size:10
Alignment explanation
Indices: 105283937--105283976 Score: 62
Period size: 10 Copynumber: 3.9 Consensus size: 10
105283927 AAATAATTTT
105283937 TATAATTATG
1 TATAATTATG
105283947 TATAATTATG
1 TATAATTATG
*
105283957 TATAATTATT
1 TATAATTATG
105283967 TAATAATTAT
1 T-ATAATTAT
105283977 TTAAGAGACA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
10 20 0.71
11 8 0.29
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (10 bp):
TATAATTATG
Found at i:105286272 original size:30 final size:30
Alignment explanation
Indices: 105286236--105286314 Score: 81
Period size: 30 Copynumber: 2.6 Consensus size: 30
105286226 TATCTCTGAT
*
105286236 AGGAAACACCTTCGTGGCGGTC-T-ATGTGTA
1 AGGAAACACCTTCGTGGCGGTCTTCAT-T-AA
* * *
105286266 AGGAAACGCCTTTGTGGTGGTCTTCATTAA
1 AGGAAACACCTTCGTGGCGGTCTTCATTAA
*
105286296 AAGAAACACCTTCGTGGCG
1 AGGAAACACCTTCGTGGCG
105286315 TAACCTAAAG
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
30 35 0.90
31 2 0.05
32 2 0.05
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (30 bp):
AGGAAACACCTTCGTGGCGGTCTTCATTAA
Found at i:105290247 original size:27 final size:30
Alignment explanation
Indices: 105290216--105290289 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 30
105290206 CTGTACATTG
105290216 TTTTTAATAATTTGAAATAA-TTT-TA-AT
1 TTTTTAATAATTTGAAATAATTTTCTATAT
*
105290243 TTTTT-ATAATTTTTAAATAATTTTCTATAT
1 TTTTTAATAA-TTTGAAATAATTTTCTATAT
* *
105290273 TTTATAATTATTTGAAA
1 TTTTTAATAATTTGAAA
105290290 ATATATTTGT
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
26 4 0.11
27 14 0.37
28 3 0.08
29 2 0.05
30 12 0.32
31 3 0.08
ACGTcount: A:0.38, C:0.01, G:0.03, T:0.58
Consensus pattern (30 bp):
TTTTTAATAATTTGAAATAATTTTCTATAT
Found at i:105303326 original size:30 final size:30
Alignment explanation
Indices: 105303292--105303354 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
105303282 ACTTATTCTA
105303292 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
*
105303322 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
105303352 TTG
1 TTG
105303355 CTTGTTAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:105303499 original size:12 final size:12
Alignment explanation
Indices: 105303478--105303511 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
105303468 TATATTGTTT
*
105303478 AAAATTATATAA
1 AAAATAATATAA
105303490 AAAATAATATAA
1 AAAATAATATAA
*
105303502 AAATTAATAT
1 AAAATAATAT
105303512 GGGCGGGCCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:105305612 original size:5 final size:5
Alignment explanation
Indices: 105305602--105305631 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
105305592 GAGTCCTTCA
105305602 ATTTT ATTTT ATTTT ATTTT ATTGTT ATTT
1 ATTTT ATTTT ATTTT ATTTT ATT-TT ATTT
105305632 ACATTCGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (5 bp):
ATTTT
Found at i:105317740 original size:6 final size:6
Alignment explanation
Indices: 105317722--105317755 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
105317712 TATAAGATCG
*
105317722 AAATCT AAA-TT AAATTT AAATTT AAATTT AAATT
1 AAATTT AAATTT AAATTT AAATTT AAATTT AAATT
105317756 GAAAACTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
5 4 0.15
6 22 0.85
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (6 bp):
AAATTT
Found at i:105318022 original size:33 final size:34
Alignment explanation
Indices: 105317974--105318042 Score: 122
Period size: 33 Copynumber: 2.1 Consensus size: 34
105317964 ATTTGAAATT
*
105317974 ATTTTTCTTACAATAAATTTATTAATTAGTGACA
1 ATTTTTCTTACAATAAATTTATCAATTAGTGACA
105318008 ATTTTTC-TACAATAAATTTATCAATTAGTGACA
1 ATTTTTCTTACAATAAATTTATCAATTAGTGACA
105318041 AT
1 AT
105318043 GCTTCTATCT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 27 0.79
34 7 0.21
ACGTcount: A:0.39, C:0.10, G:0.06, T:0.45
Consensus pattern (34 bp):
ATTTTTCTTACAATAAATTTATCAATTAGTGACA
Found at i:105318049 original size:33 final size:33
Alignment explanation
Indices: 105317982--105318049 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 33
105317972 TTATTTTTCT
* **
105317982 TACAATAAATTTATTAATTAGTGACAATTTTTC
1 TACAATAAATTTATCAATTAGTGACAATGCTTC
105318015 TACAATAAATTTATCAATTAGTGACAATGCTTC
1 TACAATAAATTTATCAATTAGTGACAATGCTTC
105318048 TA
1 TA
105318050 TCTGACACTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.41
Consensus pattern (33 bp):
TACAATAAATTTATCAATTAGTGACAATGCTTC
Found at i:105319883 original size:16 final size:17
Alignment explanation
Indices: 105319852--105319886 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
105319842 TTTAAGAATA
*
105319852 TTTAAATATTTTATATT
1 TTTAAATATATTATATT
105319869 TTTAAATA-ATTATATT
1 TTTAAATATATTATATT
105319885 TT
1 TT
105319887 AATTTTCTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
TTTAAATATATTATATT
Found at i:105324191 original size:21 final size:21
Alignment explanation
Indices: 105324140--105324191 Score: 52
Period size: 23 Copynumber: 2.3 Consensus size: 21
105324130 TTTTTAATTC
*
105324140 ATTAAATAATATATTTTTATA
1 ATTAAATAATATATTTCTATA
105324161 ATTTCAAA-ATATATATTTCTACTA
1 A-TT-AAATA-ATATATTTCTA-TA
105324185 ATTAAAT
1 ATTAAAT
105324192 GAGGATTAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 8
0.74 0.03 0.24
Matches are distributed among these distances:
21 1 0.04
22 6 0.24
23 15 0.60
24 3 0.12
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (21 bp):
ATTAAATAATATATTTCTATA
Found at i:105325060 original size:12 final size:11
Alignment explanation
Indices: 105325043--105325075 Score: 50
Period size: 10 Copynumber: 3.0 Consensus size: 11
105325033 AAGTAAATAT
105325043 AATATTATTTTA
1 AATA-TATTTTA
105325055 AATAT-TTTTA
1 AATATATTTTA
105325065 AATATATTTTA
1 AATATATTTTA
105325076 TAATTTTTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 10 0.50
11 6 0.30
12 4 0.20
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (11 bp):
AATATATTTTA
Found at i:105325069 original size:22 final size:20
Alignment explanation
Indices: 105325043--105325084 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
105325033 AAGTAAATAT
105325043 AATATTATTTTAAATATTTTTA
1 AATA-TATTTTAAA-ATTTTTA
*
105325065 AATATATTTTATAATTTTTA
1 AATATATTTTAAAATTTTTA
105325085 GGATTAGAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 7 0.37
21 8 0.42
22 4 0.21
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
AATATATTTTAAAATTTTTA
Found at i:105326405 original size:17 final size:18
Alignment explanation
Indices: 105326385--105326420 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
105326375 ATTAAAAAAA
*
105326385 TATTTTTATTATTT-TAT
1 TATTTTTATAATTTATAT
105326402 TATTTTTATAATTTATAT
1 TATTTTTATAATTTATAT
105326420 T
1 T
105326421 TAAAAATAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (18 bp):
TATTTTTATAATTTATAT
Found at i:105327873 original size:29 final size:29
Alignment explanation
Indices: 105327831--105327886 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 29
105327821 AAATAGAAGA
105327831 TATTTTTTTATTTAGTTTTATT-ATTTATT
1 TATTTTTTTATTTA-TTTTATTAATTTATT
105327860 TATTTTTATT-TTTATTTTATTAATTTA
1 TATTTTT-TTATTTATTTTATTAATTTA
105327887 GAATAGGCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
28 7 0.28
29 16 0.64
30 2 0.08
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (29 bp):
TATTTTTTTATTTATTTTATTAATTTATT
Found at i:105327880 original size:17 final size:16
Alignment explanation
Indices: 105327835--105327876 Score: 66
Period size: 17 Copynumber: 2.6 Consensus size: 16
105327825 AGAAGATATT
*
105327835 TTTTTATTTAGTTTTA
1 TTTTTATTTATTTTTA
105327851 TTATTTATTTATTTTTA
1 TT-TTTATTTATTTTTA
105327868 TTTTTATTT
1 TTTTTATTT
105327877 TATTAATTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 9 0.38
17 15 0.62
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (16 bp):
TTTTTATTTATTTTTA
Found at i:105331052 original size:2 final size:2
Alignment explanation
Indices: 105331045--105331069 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
105331035 AAATTTGTCT
105331045 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
105331070 TTCTTTAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:105334731 original size:24 final size:24
Alignment explanation
Indices: 105334703--105334754 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
105334693 CTTGATTCAT
105334703 AGCTCCAGCAGCTGCTACATATTC
1 AGCTCCAGCAGCTGCTACATATTC
* *
105334727 AGCTCCAGTAGTTGCTACATATTC
1 AGCTCCAGCAGCTGCTACATATTC
105334751 AGCT
1 AGCT
105334755 TCATTGGCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (24 bp):
AGCTCCAGCAGCTGCTACATATTC
Found at i:105340881 original size:16 final size:16
Alignment explanation
Indices: 105340843--105340897 Score: 67
Period size: 16 Copynumber: 3.4 Consensus size: 16
105340833 TTATATTAAA
105340843 AAAT-TTAATATAAAAT
1 AAATATTAA-ATAAAAT
* *
105340859 AAGTATTAAATATAAT
1 AAATATTAAATAAAAT
105340875 AAATATTAAATAAAAT
1 AAATATTAAATAAAAT
*
105340891 ATATATT
1 AAATATT
105340898 TGATTAAGGA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
16 29 0.88
17 4 0.12
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (16 bp):
AAATATTAAATAAAAT
Found at i:105341451 original size:30 final size:30
Alignment explanation
Indices: 105341373--105341464 Score: 84
Period size: 30 Copynumber: 3.0 Consensus size: 30
105341363 CAATTGGACT
*
105341373 TAAATTTTGAAATTTA-AAAAGTACA-AGAAC
1 TAAATTCT-AAATTTATAAAAGTACAGAG-AC
*
105341403 TAAATTCATAGAA--AATAAAAGTACAGAGAC
1 TAAATTC-TA-AATTTATAAAAGTACAGAGAC
*
105341433 TAAATTCTAAATTTATAAAGAGTATAGAGAC
1 TAAATTCTAAATTTATAAA-AGTACAGAGAC
105341464 T
1 T
105341465 TATGGAAAGT
Statistics
Matches: 51, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
28 2 0.04
29 3 0.06
30 30 0.59
31 16 0.31
ACGTcount: A:0.52, C:0.08, G:0.12, T:0.28
Consensus pattern (30 bp):
TAAATTCTAAATTTATAAAAGTACAGAGAC
Found at i:105351218 original size:24 final size:23
Alignment explanation
Indices: 105351184--105351232 Score: 89
Period size: 24 Copynumber: 2.1 Consensus size: 23
105351174 AACCCAACCA
105351184 TTTTTTTTGGGTTTATAAATTTG
1 TTTTTTTTGGGTTTATAAATTTG
105351207 TTTTTTTCTGGGTTTATAAATTTG
1 TTTTTTT-TGGGTTTATAAATTTG
105351231 TT
1 TT
105351233 AATCTGGAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 7 0.28
24 18 0.72
ACGTcount: A:0.16, C:0.02, G:0.16, T:0.65
Consensus pattern (23 bp):
TTTTTTTTGGGTTTATAAATTTG
Found at i:105364491 original size:104 final size:104
Alignment explanation
Indices: 105364277--105364510 Score: 301
Period size: 104 Copynumber: 2.2 Consensus size: 104
105364267 CCGTGTAAGC
* * *
105364277 CACACGAGCAAGGACATGGGCTTGTGTCCAGCCCGTATAACTCATTGTTTACGCTTTAGAACCAC
1 CACACGGGCAAGGACATGGGCATGTGTCCAGCCCGTATAACTCAATGTTTACGCTTTAGAACCAC
* *
105364342 ACGGCCAGGGACATGGGCGTGTGCCCAGGCCATGTGAGT
66 ACAGCCAGGGACATGGGCGTGTGCCCAGGCCATGCGAGT
* * * * *
105364381 CACACGGGCAAGGACATAGGCATGTGTCTAGGCCGTGTAACTCAATGTTTACGTTTTAGAACCAC
1 CACACGGGCAAGGACATGGGCATGTGTCCAGCCCGTATAACTCAATGTTTACGCTTTAGAACCAC
* *
105364446 ACAGCCAGGGATATGGGTGTGTGCCCAGG-CAGTGCGAG-
66 ACAGCCAGGGACATGGGCGTGTGCCCAGGCCA-TGCGAGT
* * *
105364484 CTTCACGGGGAAGGACATGGGCGTGTG
1 C-ACACGGGCAAGGACATGGGCATGTG
105364511 CCAAGGCAGT
Statistics
Matches: 112, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
103 3 0.03
104 109 0.97
ACGTcount: A:0.24, C:0.24, G:0.32, T:0.21
Consensus pattern (104 bp):
CACACGGGCAAGGACATGGGCATGTGTCCAGCCCGTATAACTCAATGTTTACGCTTTAGAACCAC
ACAGCCAGGGACATGGGCGTGTGCCCAGGCCATGCGAGT
Found at i:105364540 original size:42 final size:42
Alignment explanation
Indices: 105364458--105364552 Score: 109
Period size: 42 Copynumber: 2.3 Consensus size: 42
105364448 AGCCAGGGAT
* * ** * *
105364458 ATGGGTGTGTGCCCAGGCAGTGCGAGCTTCACGGGGAAGGAC
1 ATGGGCGTGTGCCAAGGCAGTGCGAGCCACACGAGCAAGGAC
* *
105364500 ATGGGCGTGTGCCAAGGCAGTGTGAGCCAGACGAGCAAGGAC
1 ATGGGCGTGTGCCAAGGCAGTGCGAGCCACACGAGCAAGGAC
*
105364542 ATGGGCATGTG
1 ATGGGCGTGTG
105364553 TCCAGGCTGT
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.22, C:0.20, G:0.42, T:0.16
Consensus pattern (42 bp):
ATGGGCGTGTGCCAAGGCAGTGCGAGCCACACGAGCAAGGAC
Found at i:105376582 original size:22 final size:22
Alignment explanation
Indices: 105376554--105376606 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
105376544 CATAAAGAGG
*
105376554 AAATATCTCTTGAGGCTTTGGC
1 AAATATCTCTTAAGGCTTTGGC
105376576 AAATATCTCTTAAGGCTTTGGC
1 AAATATCTCTTAAGGCTTTGGC
105376598 AAATCATCT
1 AAAT-ATCT
105376607 TTGTATTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 25 0.86
23 4 0.14
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (22 bp):
AAATATCTCTTAAGGCTTTGGC
Found at i:105387948 original size:41 final size:41
Alignment explanation
Indices: 105387865--105388238 Score: 541
Period size: 41 Copynumber: 9.1 Consensus size: 41
105387855 CAAAAATTGT
* **
105387865 AAAACACAGAGCAATAGCGGCATTTTTTGGTAAAACGCCGCTA
1 AAAAC-CAGAGCATTAGCGGC-GCTTTTGGTAAAACGCCGCTA
* *
105387908 AAAACTAGAGCATTAGCGGCGCTTTTGGTAAAACGTCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
* *
105387949 AAAACCAGAGCATTAGCTGTGCTTTTGGTAAAACGCCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
* *
105387990 AAAACTAGAGCATTAGCGGCGCTTTTGGTAAAACGTCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
* *
105388031 AAAACCAGAGCATTAGCTGTGCTTTTGGTAAAACGCCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
* *
105388072 AAAACCAGAGCATTAGCGGCGTTTTTTGTAAAACGCCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
* *
105388113 AAAACTAGAGCATTAGCGGCGCTTTTGGTAAAACGTCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
* *
105388154 AAAACCAGAGCATTAGCTGTGCTTTTGGTAAAACGCCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
* * * *
105388195 AAAACTAGAGCATTAGCGGCGCTTTCGGTAAAACACTGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
105388236 AAA
1 AAA
105388239 GTCATATAAC
Statistics
Matches: 296, Mismatches: 35, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
41 278 0.94
42 13 0.04
43 5 0.02
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (41 bp):
AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
Found at i:105394872 original size:10 final size:10
Alignment explanation
Indices: 105394854--105394879 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
105394844 TTTTCATAAC
105394854 TTTTATAATA
1 TTTTATAATA
105394864 TTTTATAATA
1 TTTTATAATA
105394874 TTTTAT
1 TTTTAT
105394880 TTTTTAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (10 bp):
TTTTATAATA
Found at i:105395194 original size:11 final size:11
Alignment explanation
Indices: 105395178--105395202 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
105395168 GGTATTTTTT
105395178 ACCTGTATAAA
1 ACCTGTATAAA
105395189 ACCTGTATAAA
1 ACCTGTATAAA
105395200 ACC
1 ACC
105395203 CATATTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.24, G:0.08, T:0.24
Consensus pattern (11 bp):
ACCTGTATAAA
Found at i:105395666 original size:48 final size:46
Alignment explanation
Indices: 105395570--105395737 Score: 134
Period size: 48 Copynumber: 3.6 Consensus size: 46
105395560 CCAGTATAAA
* * * *
105395570 ACCATATCTGGGATATGGCATCGGCATTGATAAGTGATCTCATATAAG
1 ACCATATCTGGGACATGGCATTGGCATCGAT-A-TGATCTCATGTAAG
* *
105395618 ACCATGTCTGGGACATGGCATTGGCATCGATATGATACATCGTGTAAG
1 ACCATATCTGGGACATGGCATTGGCATCGATATGAT-C-TCATGTAAG
* *
105395666 ACTATAGT-TGGG-C-T---ATTGGCTTCGATTTATGATC-CTATGTAAG
1 ACCATA-TCTGGGACATGGCATTGGCATCGA--TATGATCTC-ATGTAAG
*
105395709 ACCATATCTGGGATATGGCATTGGCATCG
1 ACCATATCTGGGACATGGCATTGGCATCG
105395738 TACTATGTGT
Statistics
Matches: 95, Mismatches: 13, Indels: 24
0.72 0.10 0.18
Matches are distributed among these distances:
42 2 0.02
43 25 0.26
44 1 0.01
45 7 0.07
46 5 0.05
47 3 0.03
48 51 0.54
49 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (46 bp):
ACCATATCTGGGACATGGCATTGGCATCGATATGATCTCATGTAAG
Found at i:105398023 original size:58 final size:58
Alignment explanation
Indices: 105397944--105398068 Score: 171
Period size: 58 Copynumber: 2.2 Consensus size: 58
105397934 CTTCCATATC
* * *
105397944 TAGAGATTTCCATAAAGGCGTCCTTTTCATTCAGTACTCACTACAAATACTTTCCTTT
1 TAGAGATTGCCATAAAGGCGTCCTTTTCATTCAGTACTCACCACAAAGACTTTCCTTT
* * *
105398002 TAGAGATTGCCA-CAAGTGCGTCCTTTTCATTCAGTACTCACCACAAAGGCTTTTCTTT
1 TAGAGATTGCCATAAAG-GCGTCCTTTTCATTCAGTACTCACCACAAAGACTTTCCTTT
*
105398060 CAGAGATTG
1 TAGAGATTG
105398069 TGACAAAGAC
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
57 3 0.05
58 56 0.95
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.35
Consensus pattern (58 bp):
TAGAGATTGCCATAAAGGCGTCCTTTTCATTCAGTACTCACCACAAAGACTTTCCTTT
Found at i:105398084 original size:58 final size:58
Alignment explanation
Indices: 105397964--105398087 Score: 151
Period size: 58 Copynumber: 2.1 Consensus size: 58
105397954 CATAAAGGCG
* * * * *
105397964 TCCTTTTCATTCAGTACTCACTACAAATACTTTCCTTTTAGAGATTGCCACAAGTGCG
1 TCCTTTTCATTCAGTACTCACCACAAAGACTTTCCTTTCAGAGATTGCCACAAGTACA
* * **
105398022 TCCTTTTCATTCAGTACTCACCACAAAGGCTTTTCTTTCAGAGATTGTGACAAAG-ACA
1 TCCTTTTCATTCAGTACTCACCACAAAGACTTTCCTTTCAGAGATTGCCAC-AAGTACA
105398080 TCCTTTTC
1 TCCTTTTC
105398088 TGGTGTTTTA
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
58 53 0.95
59 3 0.05
ACGTcount: A:0.26, C:0.26, G:0.12, T:0.36
Consensus pattern (58 bp):
TCCTTTTCATTCAGTACTCACCACAAAGACTTTCCTTTCAGAGATTGCCACAAGTACA
Found at i:105400393 original size:39 final size:39
Alignment explanation
Indices: 105400339--105400437 Score: 171
Period size: 39 Copynumber: 2.5 Consensus size: 39
105400329 NNNNNNNNNN
105400339 GGACTTCAGGTCCGCAGGCTATAAGCGAGAATTATATCC
1 GGACTTCAGGTCCGCAGGCTATAAGCGAGAATTATATCC
* *
105400378 GGACTTCATGTCCGCAGGCTATATGCGAGAATTATATCC
1 GGACTTCAGGTCCGCAGGCTATAAGCGAGAATTATATCC
*
105400417 GGACTTTAGGTCCGCAGGCTA
1 GGACTTCAGGTCCGCAGGCTA
105400438 CGTGCTGGAC
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 56 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (39 bp):
GGACTTCAGGTCCGCAGGCTATAAGCGAGAATTATATCC
Found at i:105401431 original size:256 final size:256
Alignment explanation
Indices: 105400976--105401486 Score: 995
Period size: 256 Copynumber: 2.0 Consensus size: 256
105400966 ATAGATTGAT
* *
105400976 GTTAGCTGTCGATCTTGGGAATTTCAAGTCGATGTCATCCACACTACCCAAGCCTTTTTGGTACT
1 GTTAGCTGTCGATCTCGGGAATTTCAAGTCGAAGTCATCCACACTACCCAAGCCTTTTTGGTACT
*
105401041 TTTGTAGCTGAACTTTGTTAATGGCATGTGTAGGACTGACCTTTGTTGTTAACTAAGTATCTTTT
66 TTTGCAGCTGAACTTTGTTAATGGCATGTGTAGGACTGACCTTTGTTGTTAACTAAGTATCTTTT
105401106 GGTAATGTATATATTCGTATAGCCATGCGAAAATGGCTTATATATTTTGAGCATAGCATTATAAT
131 GGTAATGTATATATTCGTATAGCCATGCGAAAATGGCTTATATATTTTGAGCATAGCATTATAAT
105401171 CATTTTGTATATATGGTCTTATGATATGGTTATTGAGTGGTGTGGAAATGCTTGGTGATGC
196 CATTTTGTATATATGGTCTTATGATATGGTTATTGAGTGGTGTGGAAATGCTTGGTGATGC
105401232 GTTAGCTGTCGATCTCGGGAATTTCAAGTCGAAGTCATCCACACTACCCAAGCCTTTTTGGTACT
1 GTTAGCTGTCGATCTCGGGAATTTCAAGTCGAAGTCATCCACACTACCCAAGCCTTTTTGGTACT
105401297 TTTGCAGCTGAACTTTGTTAATGGCATGTGTAGGACTGACCTTTGTTGTTAACTAAGTATCTTTT
66 TTTGCAGCTGAACTTTGTTAATGGCATGTGTAGGACTGACCTTTGTTGTTAACTAAGTATCTTTT
105401362 GGTAATGTATATATTCGTATAGCCATGCGAAAATGGCTTATATATTTTGAGCATAGCATTATAAT
131 GGTAATGTATATATTCGTATAGCCATGCGAAAATGGCTTATATATTTTGAGCATAGCATTATAAT
105401427 CATTTTGTATATATGGTCTTATGATATGGTTATTGAGTGGTGTGGAAATGCTTGGTGATG
196 CATTTTGTATATATGGTCTTATGATATGGTTATTGAGTGGTGTGGAAATGCTTGGTGATG
105401487 ATTAGCCATT
Statistics
Matches: 252, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
256 252 1.00
ACGTcount: A:0.25, C:0.14, G:0.22, T:0.39
Consensus pattern (256 bp):
GTTAGCTGTCGATCTCGGGAATTTCAAGTCGAAGTCATCCACACTACCCAAGCCTTTTTGGTACT
TTTGCAGCTGAACTTTGTTAATGGCATGTGTAGGACTGACCTTTGTTGTTAACTAAGTATCTTTT
GGTAATGTATATATTCGTATAGCCATGCGAAAATGGCTTATATATTTTGAGCATAGCATTATAAT
CATTTTGTATATATGGTCTTATGATATGGTTATTGAGTGGTGTGGAAATGCTTGGTGATGC
Found at i:105401500 original size:17 final size:17
Alignment explanation
Indices: 105401478--105401515 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
105401468 GTGGAAATGC
105401478 TTGGTGATGATTAGCCA
1 TTGGTGATGATTAGCCA
105401495 TTGGTGATGATTAGCCA
1 TTGGTGATGATTAGCCA
105401512 TTGG
1 TTGG
105401516 AATGGCTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.21, C:0.11, G:0.32, T:0.37
Consensus pattern (17 bp):
TTGGTGATGATTAGCCA
Found at i:105408889 original size:39 final size:39
Alignment explanation
Indices: 105408832--105408979 Score: 242
Period size: 39 Copynumber: 3.8 Consensus size: 39
105408822 ATATATATGT
*
105408832 GAGAATTATATCCAGACTTCAGGTCCGCAGGCTATAAGC
1 GAGAATTATATCCGGACTTCAGGTCCGCAGGCTATAAGC
*
105408871 GAGAATTATATCTGGACTTCAGGTCCGCAGGCTATAAGC
1 GAGAATTATATCCGGACTTCAGGTCCGCAGGCTATAAGC
* * *
105408910 TAGAATTATATCCGGACTTCATGTCCGCAGGCTATATGC
1 GAGAATTATATCCGGACTTCAGGTCCGCAGGCTATAAGC
*
105408949 GAGAATTATATCCGGACTTTAGGTCCGCAGG
1 GAGAATTATATCCGGACTTCAGGTCCGCAGG
105408980 ATACGTGCTG
Statistics
Matches: 100, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 100 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (39 bp):
GAGAATTATATCCGGACTTCAGGTCCGCAGGCTATAAGC
Found at i:105411690 original size:26 final size:26
Alignment explanation
Indices: 105411661--105411733 Score: 103
Period size: 26 Copynumber: 2.8 Consensus size: 26
105411651 ATTTACTCTA
105411661 GTAAAATTTTGACTATTTTACACCAC
1 GTAAAATTTTGACTATTTTACACCAC
* * *
105411687 GTAAAATTTTAACAATTTTACATCAC
1 GTAAAATTTTGACTATTTTACACCAC
105411713 GTAAAATTTTGA-TGATTTTAC
1 GTAAAATTTTGACT-ATTTTAC
105411734 CCTTGAGAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.37, C:0.14, G:0.08, T:0.41
Consensus pattern (26 bp):
GTAAAATTTTGACTATTTTACACCAC
Found at i:105414473 original size:17 final size:19
Alignment explanation
Indices: 105414431--105414474 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
105414421 ATGAAATTTT
*
105414431 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
105414450 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
105414468 AA-TATTA
1 AATTATTA
105414475 CTGTAAGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:105416899 original size:25 final size:25
Alignment explanation
Indices: 105416870--105416917 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
105416860 TTATAACATG
* *
105416870 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
105416895 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
105416918 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:105417003 original size:11 final size:11
Alignment explanation
Indices: 105416965--105417020 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
105416955 CATGGTATGT
105416965 ATGATATGCAC
1 ATGATATGCAC
* *
105416976 ATGACATGTAC
1 ATGATATGCAC
105416987 --GATATGCAC
1 ATGATATGCAC
*
105416996 ATGATATG--T
1 ATGATATGCAC
105417005 ATGATATGCAC
1 ATGATATGCAC
105417016 ATGAT
1 ATGAT
105417021 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:105417020 original size:20 final size:20
Alignment explanation
Indices: 105416954--105417020 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
105416944 ATTTTGATAA
*
105416954 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
105416974 ACATGACATGTACGATATGC
1 ACATGATATGTATGATATGC
105416994 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
105417014 ACATGAT
1 ACATGAT
105417021 GTATTCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:105417097 original size:24 final size:24
Alignment explanation
Indices: 105417070--105417189 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
105417060 GAGGAAGTGC
105417070 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
105417094 AAAAGGGCTTATGCCCCAATTATC
1 AAAAGGGCTTATGCCCCAGTTATT
105417118 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
105417142 AAAAGAGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
105417166 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
105417190 ATGATAAAGC
Statistics
Matches: 85, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
24 75 0.88
25 10 0.12
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:105431143 original size:19 final size:21
Alignment explanation
Indices: 105431093--105431137 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
105431083 AAAAGTTATC
105431093 AAAAATCTTTAAAAATATAAA
1 AAAAATCTTTAAAAATATAAA
105431114 AAAAATCTTTAAAAAT-TAAA
1 AAAAATCTTTAAAAATATAAA
105431134 AAAA
1 AAAA
105431138 TATTTATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (21 bp):
AAAAATCTTTAAAAATATAAA
Found at i:105431384 original size:44 final size:44
Alignment explanation
Indices: 105431321--105431445 Score: 182
Period size: 44 Copynumber: 2.9 Consensus size: 44
105431311 GACAACATGT
105431321 GGAACTTGTGTGCCATGTGCATTGGAGAAAAAAATTATTTTATG
1 GGAACTTGTGTGCCATGTGCATTGGAGAAAAAAATTATTTTATG
* *
105431365 GGAACTTGTCTGCCATGTGCATTGGAG-AAAAAACTATTTTATG
1 GGAACTTGTGTGCCATGTGCATTGGAGAAAAAAATTATTTTATG
* * *
105431408 GGAACTTGTGAGCCATATTG-ATCGGAGAAAAAAATTAT
1 GGAACTTGTGTGCCAT-GTGCATTGGAGAAAAAAATTAT
105431446 GGGGTAGGGG
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
43 35 0.49
44 37 0.51
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.31
Consensus pattern (44 bp):
GGAACTTGTGTGCCATGTGCATTGGAGAAAAAAATTATTTTATG
Found at i:105431423 original size:43 final size:43
Alignment explanation
Indices: 105431321--105431440 Score: 170
Period size: 43 Copynumber: 2.8 Consensus size: 43
105431311 GACAACATGT
*
105431321 GGAACTTGTGTGCCATGTGCATTGGAGAAAAAAATTATTTTATG
1 GGAACTTGTGTGCCATGTGCATTGGAG-AAAAAACTATTTTATG
*
105431365 GGAACTTGTCTGCCATGTGCATTGGAGAAAAAACTATTTTATG
1 GGAACTTGTGTGCCATGTGCATTGGAGAAAAAACTATTTTATG
* * *
105431408 GGAACTTGTGAGCCATATTG-ATCGGAGAAAAAA
1 GGAACTTGTGTGCCAT-GTGCATTGGAGAAAAAA
105431441 ATTATGGGGT
Statistics
Matches: 69, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
43 41 0.59
44 28 0.41
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (43 bp):
GGAACTTGTGTGCCATGTGCATTGGAGAAAAAACTATTTTATG
Found at i:105434422 original size:22 final size:22
Alignment explanation
Indices: 105434394--105434438 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 22
105434384 TTTTTATTTC
105434394 ATTCCTTCG-GTATATCTCTATA
1 ATTCCTT-GTGTATATCTCTATA
105434416 ATTCCTTGTGTATATCTCTATA
1 ATTCCTTGTGTATATCTCTATA
105434438 A
1 A
105434439 GCTTTCTGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 1 0.05
22 21 0.95
ACGTcount: A:0.24, C:0.20, G:0.09, T:0.47
Consensus pattern (22 bp):
ATTCCTTGTGTATATCTCTATA
Found at i:105436985 original size:23 final size:23
Alignment explanation
Indices: 105436940--105436998 Score: 77
Period size: 23 Copynumber: 2.6 Consensus size: 23
105436930 AAAATCTATC
105436940 TACAAATCATATC-TCTAAGATT
1 TACAAATCATATCTTCTAAGATT
*
105436962 T-CAAAATCATATCTTCTAATATT
1 TAC-AAATCATATCTTCTAAGATT
*
105436985 TACACATCATATCT
1 TACAAATCATATCT
105436999 AAGATTGTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
21 1 0.03
22 11 0.34
23 19 0.59
24 1 0.03
ACGTcount: A:0.39, C:0.20, G:0.02, T:0.39
Consensus pattern (23 bp):
TACAAATCATATCTTCTAAGATT
Found at i:105448863 original size:20 final size:20
Alignment explanation
Indices: 105448840--105448897 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 20
105448830 TTTTCTTGTA
*
105448840 AAAACTCAAGTTTTTCCTAT
1 AAAACCCAAGTTTTTCCTAT
* *
105448860 AAAACCCAAGTAATTCCCTAT
1 AAAACCCAAGT-TTTTCCTAT
105448881 AAAATCCCAAGTTTTTC
1 AAAA-CCCAAGTTTTTC
105448898 TTTCTCTTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
20 10 0.32
21 14 0.45
22 7 0.23
ACGTcount: A:0.38, C:0.24, G:0.05, T:0.33
Consensus pattern (20 bp):
AAAACCCAAGTTTTTCCTAT
Found at i:105451260 original size:56 final size:56
Alignment explanation
Indices: 105451172--105451334 Score: 290
Period size: 56 Copynumber: 2.9 Consensus size: 56
105451162 GTAGTTTACT
*
105451172 TTTTTATTAATTTATGAAAAGAGTTGGCTGCATCAACCATTACTAACCCATGAGAA
1 TTTTTATTAATTTATGAAAAGAGTTTGCTGCATCAACCATTACTAACCCATGAGAA
* *
105451228 TTTTTATTAATTTATGAAAAGAGTTTGTTGCATTAACCATTACTAACCCATGAGAA
1 TTTTTATTAATTTATGAAAAGAGTTTGCTGCATCAACCATTACTAACCCATGAGAA
*
105451284 TTCTTATTAATTTATGAAAAGAGTTTGCTGCATCAACCATTACTAACCCAT
1 TTTTTATTAATTTATGAAAAGAGTTTGCTGCATCAACCATTACTAACCCAT
105451335 AAATTCTCAA
Statistics
Matches: 101, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 101 1.00
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (56 bp):
TTTTTATTAATTTATGAAAAGAGTTTGCTGCATCAACCATTACTAACCCATGAGAA
Found at i:105451906 original size:22 final size:23
Alignment explanation
Indices: 105451851--105451906 Score: 80
Period size: 21 Copynumber: 2.5 Consensus size: 23
105451841 AAAAAATAAA
*
105451851 AAAAAATATTTTTTATAAATTTGT
1 AAAAAATA-TTATTATAAATTTGT
105451875 AAAAAA-ATTATTA-AAATTTGT
1 AAAAAATATTATTATAAATTTGT
105451896 AAAAAATATTA
1 AAAAAATATTA
105451907 AATAAAGTCA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 14 0.47
22 9 0.30
23 1 0.03
24 6 0.20
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (23 bp):
AAAAAATATTATTATAAATTTGT
Found at i:105451920 original size:21 final size:21
Alignment explanation
Indices: 105451896--105451944 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
105451886 TAAAATTTGT
* *
105451896 AAAAAATATTAAATAAAGTCA
1 AAAAAATATTAAAAAAAGTAA
* *
105451917 AAAAATTTTTAAAAAAAGTAA
1 AAAAAATATTAAAAAAAGTAA
105451938 ATAAAAA
1 A-AAAAA
105451945 AACCATTTAA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.24
Consensus pattern (21 bp):
AAAAAATATTAAAAAAAGTAA
Found at i:105452321 original size:30 final size:30
Alignment explanation
Indices: 105452287--105452350 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 30
105452277 AACTTATTTT
105452287 TTTGTTAATTTTGTTATTATTTTAAAGACA
1 TTTGTTAATTTTGTTATTATTTTAAAGACA
*
105452317 TTTGTTAATTTTGTTATTATTTTAGAGACA
1 TTTGTTAATTTTGTTATTATTTTAAAGACA
105452347 TTTG
1 TTTG
105452351 CTTGTTAAGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.27, C:0.03, G:0.12, T:0.58
Consensus pattern (30 bp):
TTTGTTAATTTTGTTATTATTTTAAAGACA
Found at i:105452443 original size:23 final size:23
Alignment explanation
Indices: 105452400--105452443 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
105452390 TCTATTTTTT
*
105452400 AAAATTTATTTTCAATTTTTTGA
1 AAAATTTATTTTCAATGTTTTGA
*
105452423 AAAATATTATTTT-GATGTTTT
1 AAAAT-TTATTTTCAATGTTTT
105452444 TAGTATTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 11 0.61
24 7 0.39
ACGTcount: A:0.34, C:0.02, G:0.07, T:0.57
Consensus pattern (23 bp):
AAAATTTATTTTCAATGTTTTGA
Found at i:105452444 original size:24 final size:23
Alignment explanation
Indices: 105452393--105452435 Score: 63
Period size: 21 Copynumber: 1.9 Consensus size: 23
105452383 AAGTATATCT
105452393 ATTTTTT--AAAATTTATTTTCA
1 ATTTTTTGAAAAATTTATTTTCA
105452414 ATTTTTTGAAAAATATTATTTT
1 ATTTTTTGAAAAAT-TTATTTT
105452436 GATGTTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.37
23 5 0.26
24 7 0.37
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (23 bp):
ATTTTTTGAAAAATTTATTTTCA
Found at i:105452503 original size:12 final size:12
Alignment explanation
Indices: 105452473--105452505 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
105452463 TTTATTTTTT
105452473 AAAATT-ATATA
1 AAAATTAATATA
105452484 AAAA-TAATATA
1 AAAATTAATATA
105452495 AAAATTAATAT
1 AAAATTAATAT
105452506 GGGTGGCCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:105454252 original size:3 final size:3
Alignment explanation
Indices: 105454237--105454275 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
105454227 AAAGGCTTTG
*
105454237 TAA TAA TAG TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
105454276 AACACAATGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:105458468 original size:21 final size:21
Alignment explanation
Indices: 105458442--105458573 Score: 131
Period size: 21 Copynumber: 6.0 Consensus size: 21
105458432 AAAAGACACC
105458442 CCAATTTTGACCATTACCATT
1 CCAATTTTGACCATTACCATT
* *
105458463 CCAATTTGGACCATTAGCC-TG
1 CCAATTTTGACCATTA-CCATT
105458484 CCAATTTTGACCATTACCATT
1 CCAATTTTGACCATTACCATT
**
105458505 CCAATTTTGACCATTAAAATTAGCCT
1 CCAATTTTGACCATTACCA-T----T
*
105458531 GCCAATTTTGACCAGTACCATT
1 -CCAATTTTGACCATTACCATT
* *
105458553 CCAACTTTGACCAGTACCATT
1 CCAATTTTGACCATTACCATT
105458574 AGCCTGCCAA
Statistics
Matches: 93, Mismatches: 10, Indels: 16
0.78 0.08 0.13
Matches are distributed among these distances:
20 2 0.02
21 69 0.74
22 4 0.04
26 2 0.02
27 16 0.17
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.33
Consensus pattern (21 bp):
CCAATTTTGACCATTACCATT
Found at i:105458530 original size:48 final size:45
Alignment explanation
Indices: 105458442--105458599 Score: 205
Period size: 48 Copynumber: 3.4 Consensus size: 45
105458432 AAAAGACACC
*
105458442 CCAATTTTGACCATTACCATTCCAATTTGGACC---ATTAGCCTG
1 CCAATTTTGACCATTACCATTCCAATTTTGACCATAATTAGCCTG
105458484 CCAATTTTGACCATTACCATTCCAATTTTGACCATTAAAATTAGCCTG
1 CCAATTTTGACCATTACCATTCCAATTTTGACCA-T--AATTAGCCTG
* *
105458532 CCAATTTTGACCAGTACCATTCCAACTTTGACCAGTACCATTAGCCTG
1 CCAATTTTGACCATTACCATTCCAATTTTGACCA-TA--ATTAGCCTG
*
105458580 CCAATTTTGAACATTACCAT
1 CCAATTTTGACCATTACCAT
105458600 CATTGCCATT
Statistics
Matches: 102, Mismatches: 6, Indels: 10
0.86 0.05 0.08
Matches are distributed among these distances:
42 32 0.31
46 1 0.01
48 69 0.68
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.33
Consensus pattern (45 bp):
CCAATTTTGACCATTACCATTCCAATTTTGACCATAATTAGCCTG
Found at i:105458583 original size:27 final size:27
Alignment explanation
Indices: 105458472--105458626 Score: 118
Period size: 27 Copynumber: 6.1 Consensus size: 27
105458462 TCCAATTTGG
105458472 ACCATTAGCCTGCCAATTTTGACCATT
1 ACCATTAGCCTGCCAATTTTGACCATT
105458499 ACCA-T----T-CCAATTTTGACCATT
1 ACCATTAGCCTGCCAATTTTGACCATT
** *
105458520 AAAATTAGCCTGCCAATTTTGACCAGT
1 ACCATTAGCCTGCCAATTTTGACCATT
* *
105458547 ACCA-T----T-CCAACTTTGACCAGT
1 ACCATTAGCCTGCCAATTTTGACCATT
*
105458568 ACCATTAGCCTGCCAATTTTGAACATT
1 ACCATTAGCCTGCCAATTTTGACCATT
* * *
105458595 ACCATCATTGCCATTCCAATTTTGTCCATT
1 ACCAT--TAGCC-TGCCAATTTTGACCATT
105458625 AC
1 AC
105458627 TAGTTGGAAA
Statistics
Matches: 100, Mismatches: 13, Indels: 27
0.71 0.09 0.19
Matches are distributed among these distances:
21 35 0.35
22 4 0.04
26 4 0.04
27 37 0.37
29 4 0.04
30 16 0.16
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.34
Consensus pattern (27 bp):
ACCATTAGCCTGCCAATTTTGACCATT
Found at i:105463712 original size:21 final size:20
Alignment explanation
Indices: 105463688--105463731 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
105463678 GTAAGTTATG
* *
105463688 AATATCAATTAAATTATTTCA
1 AATATCAA-TAAATCATTACA
*
105463709 AATATCTATAAATCATTACA
1 AATATCAATAAATCATTACA
105463729 AAT
1 AAT
105463732 GAAAACCAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (20 bp):
AATATCAATAAATCATTACA
Found at i:105477472 original size:18 final size:17
Alignment explanation
Indices: 105477427--105477479 Score: 70
Period size: 18 Copynumber: 3.0 Consensus size: 17
105477417 TTCATTATTA
105477427 AATATTTTTATATTGTTT
1 AATATTTTTATATT-TTT
**
105477445 AATAACTTTATATTTTT
1 AATATTTTTATATTTTT
105477462 AATGATTTTTATATTTTT
1 AAT-ATTTTTATATTTTT
105477480 TTTGAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
17 6 0.20
18 24 0.80
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.64
Consensus pattern (17 bp):
AATATTTTTATATTTTT
Done.