Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 320 of 322
Found at i:105961781 original size:18 final size:18
Alignment explanation
Indices: 105961758--105961793 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
105961748 GATTGTCTTA
105961758 TATAAAA-AATATAAATAT
1 TATAAAATAAT-TAAATAT
105961776 TATAAAATAATTAAATAT
1 TATAAAATAATTAAATAT
105961794 AATATGATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.82
19 3 0.18
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (18 bp):
TATAAAATAATTAAATAT
Found at i:105964995 original size:230 final size:233
Alignment explanation
Indices: 105964564--105965029 Score: 724
Period size: 230 Copynumber: 2.0 Consensus size: 233
105964554 CTAAACTTCG
105964564 AAATTTCCGAGAAAAGCGTTCTTACTTGTGACTGGTGATTAGAGATCACTTCATTCCCGTCATCA
1 AAATTTCCGAGAAAAGCGTTCTTACTTGTGACTGGTGATTAGAGATCACTTCATTCCCGTCATCA
*
105964629 ATAAAGTTTTCGCTGTTTAAAACCGGACAGGGAGTTATGAATTCATTAGTTTGTTCACTTTGAGT
66 ATAAAG-TTTCGCTG--TAAAACCGGACAGGGAGTTATAAATTCATTAGTTTGTTCACTTTGAGT
* * *
105964694 CCACCCATACTCATTAGTTACTTCGGTTTCAACTAATGACTCCGAACCGAGTTCTACTTGAACCT
128 CCACCCATACTCATTAGTTACTTCCGTTTCAACTAATGACTCCGAACCAAGTTCTACTCGAACCT
*
105964759 GAAATATACATAAAACATAAAGTCGATGTCTAGTATTTTAA
193 GAAATATACATAAAACATAAACTCGATGTCTAGTATTTTAA
*
105964800 AAATTTCCGAGAAAAGTGTTCTTACTTGTGACTGGTGA-TAGGAGATCACTTCATTCCCGTCATC
1 AAATTTCCGAGAAAAGCGTTCTTACTTGTGACTGGTGATTA-GAGATCACTTCATTCCCGTCATC
* * *
105964864 AATAAAG-TT-GCTG-AAAACTGGATAGGGTGTTATAAATTCATTAGTTTGTTCACTTTGAGTCC
65 AATAAAGTTTCGCTGTAAAACCGGACAGGGAGTTATAAATTCATTAGTTTGTTCACTTTGAGTCC
* * * * *
105964926 ACTCGTACTCATTAGTTACTTCCGTTTCAACTAATGGCTCCGGACCAAGTTCTACTCGAACTTGA
130 ACCCATACTCATTAGTTACTTCCGTTTCAACTAATGACTCCGAACCAAGTTCTACTCGAACCTGA
* *
105964991 AATATACATAAAACATAAACTTGATGTGTAGTATTTTAA
195 AATATACATAAAACATAAACTCGATGTCTAGTATTTTAA
105965030 TTAGTCACCA
Statistics
Matches: 213, Mismatches: 16, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
230 138 0.65
233 4 0.02
234 2 0.01
235 2 0.01
236 67 0.31
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (233 bp):
AAATTTCCGAGAAAAGCGTTCTTACTTGTGACTGGTGATTAGAGATCACTTCATTCCCGTCATCA
ATAAAGTTTCGCTGTAAAACCGGACAGGGAGTTATAAATTCATTAGTTTGTTCACTTTGAGTCCA
CCCATACTCATTAGTTACTTCCGTTTCAACTAATGACTCCGAACCAAGTTCTACTCGAACCTGAA
ATATACATAAAACATAAACTCGATGTCTAGTATTTTAA
Found at i:105966474 original size:31 final size:32
Alignment explanation
Indices: 105966422--105966482 Score: 81
Period size: 31 Copynumber: 1.9 Consensus size: 32
105966412 TAAAAATAAC
*
105966422 ATTATATCAAAATATAAAAATATAGTATAAAT
1 ATTATATCAAAATATAAAAATATAATATAAAT
*
105966454 ATTATAT-AAAATA-ATTAAATATAATATAA
1 ATTATATCAAAATATA-AAAATATAATATAA
105966483 TTAGTGGATG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 1 0.04
31 18 0.69
32 7 0.27
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (32 bp):
ATTATATCAAAATATAAAAATATAATATAAAT
Found at i:105967048 original size:9 final size:9
Alignment explanation
Indices: 105967036--105967061 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
105967026 TAAAATTGAA
105967036 TTTTTTAAT
1 TTTTTTAAT
105967045 TTTTTTAAT
1 TTTTTTAAT
105967054 TTTTTTAA
1 TTTTTTAA
105967062 AAAATAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTTTTAAT
Found at i:105967476 original size:25 final size:23
Alignment explanation
Indices: 105967435--105967492 Score: 64
Period size: 25 Copynumber: 2.5 Consensus size: 23
105967425 AATAAAATTT
* *
105967435 TAATTTTTTATAGTATATATCTTTA
1 TAATTTTTTAAAATATA-AT-TTTA
105967460 TAATTTTTTAAAATATAATTTTA
1 TAATTTTTTAAAATATAATTTTA
*
105967483 T-ATTTATTAA
1 TAATTTTTTAA
105967493 TTTAAAATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
22 8 0.27
23 5 0.17
24 2 0.07
25 15 0.50
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (23 bp):
TAATTTTTTAAAATATAATTTTA
Found at i:105974397 original size:31 final size:29
Alignment explanation
Indices: 105974362--105974424 Score: 72
Period size: 31 Copynumber: 2.1 Consensus size: 29
105974352 AATTATGTTG
*
105974362 TTAGTCCCTATACTTATTTAAAATTCAAAAA
1 TTAGTCCATATACTT-TTT-AAATTCAAAAA
* * *
105974393 TTAGTTCATATACTTTTTCAATTTAAAAA
1 TTAGTCCATATACTTTTTAAATTCAAAAA
105974422 TTA
1 TTA
105974425 TAGTCCGACC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 12 0.43
30 3 0.11
31 13 0.46
ACGTcount: A:0.40, C:0.13, G:0.03, T:0.44
Consensus pattern (29 bp):
TTAGTCCATATACTTTTTAAATTCAAAAA
Found at i:105975921 original size:29 final size:29
Alignment explanation
Indices: 105975889--105975950 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 29
105975879 TTATAAATAC
105975889 TAAATTAAATTAATCTCTT-TATTATTAAA
1 TAAATTAAATTAATCT-TTATATTATTAAA
*
105975918 TAAATTAATTTAATCTTTATATTATTAAA
1 TAAATTAAATTAATCTTTATATTATTAAA
105975947 -AAAT
1 TAAAT
105975951 AAAAAATAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
28 6 0.19
29 25 0.81
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.48
Consensus pattern (29 bp):
TAAATTAAATTAATCTTTATATTATTAAA
Found at i:105983537 original size:96 final size:96
Alignment explanation
Indices: 105983373--105983562 Score: 380
Period size: 96 Copynumber: 2.0 Consensus size: 96
105983363 CTACAAGAAG
105983373 AGACAAAATTGACTGAATTCAATCAAATGAAACAAACATAAAACCAACAAAAAGAATAGGCCAAA
1 AGACAAAATTGACTGAATTCAATCAAATGAAACAAACATAAAACCAACAAAAAGAATAGGCCAAA
105983438 GCATCACAGGAAATGAATTTTTTAACTGAAT
66 GCATCACAGGAAATGAATTTTTTAACTGAAT
105983469 AGACAAAATTGACTGAATTCAATCAAATGAAACAAACATAAAACCAACAAAAAGAATAGGCCAAA
1 AGACAAAATTGACTGAATTCAATCAAATGAAACAAACATAAAACCAACAAAAAGAATAGGCCAAA
105983534 GCATCACAGGAAATGAATTTTTTAACTGA
66 GCATCACAGGAAATGAATTTTTTAACTGA
105983563 GAGACACAGA
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
96 94 1.00
ACGTcount: A:0.52, C:0.16, G:0.13, T:0.19
Consensus pattern (96 bp):
AGACAAAATTGACTGAATTCAATCAAATGAAACAAACATAAAACCAACAAAAAGAATAGGCCAAA
GCATCACAGGAAATGAATTTTTTAACTGAAT
Found at i:105991031 original size:45 final size:44
Alignment explanation
Indices: 105990965--105991059 Score: 127
Period size: 45 Copynumber: 2.1 Consensus size: 44
105990955 GGATTAGAGG
* * *
105990965 TGTAATGGAATAGATGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
105991010 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
105991054 TGTAAT
1 TGTAAT
105991060 AGAGGTGTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 18 0.41
45 26 0.59
ACGTcount: A:0.35, C:0.05, G:0.26, T:0.34
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:105991201 original size:27 final size:25
Alignment explanation
Indices: 105991178--105991228 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 25
105991168 ATTTATTATC
105991178 AAAAATAA-ATTATTTAATCATATTT
1 AAAAATAATATTATTTAAT-ATATTT
*
105991203 AAACATAATTATTATTTAATATATTT
1 AAAAATAA-TATTATTTAATATATTT
105991229 TAATTAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 7 0.30
26 6 0.26
27 10 0.43
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (25 bp):
AAAAATAATATTATTTAATATATTT
Found at i:105991242 original size:18 final size:17
Alignment explanation
Indices: 105991221--105991255 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
105991211 TTATTATTTA
*
105991221 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
105991239 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
105991256 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:105991389 original size:18 final size:17
Alignment explanation
Indices: 105991368--105991402 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
105991358 TTATTATTAA
*
105991368 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
105991386 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
105991403 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:105991414 original size:147 final size:149
Alignment explanation
Indices: 105991140--105991414 Score: 491
Period size: 147 Copynumber: 1.9 Consensus size: 149
105991130 ATGATTATTG
* *
105991140 TTATTGTTATTTAAATTTTAATAAGATTATTTATTATCAAAAATAAATTATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
*
105991205 ACATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
105991270 AGAAATTTGTTTTGGTAAA
131 AGAAATTTGTTTTGGTAAA
* *
105991289 TTATT-TTATTTAAATTTTAATAAGATTA-TTAATATCAATAATAAATAATTTACTCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
105991352 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
105991415 ATATTCTTAT
Statistics
Matches: 121, Mismatches: 5, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
147 93 0.77
148 23 0.19
149 5 0.04
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.48
Consensus pattern (149 bp):
TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
AGAAATTTGTTTTGGTAAA
Found at i:105991514 original size:18 final size:17
Alignment explanation
Indices: 105991493--105991527 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
105991483 TTATTATTAA
105991493 ATATAATATAATTAAAAT
1 ATATAATATAA-TAAAAT
*
105991511 ATATAATTTAATAAAAT
1 ATATAATATAATAAAAT
105991528 TCTAATAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
ATATAATATAATAAAAT
Found at i:105991588 original size:124 final size:121
Alignment explanation
Indices: 105991351--105991647 Score: 447
Period size: 124 Copynumber: 2.4 Consensus size: 121
105991341 CTCATATTTA
*
105991351 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
* *
105991416 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAATAAAAT-
66 TATTCTTATATGAATTTACTAAAACCATAATATATGATACTATAAAATAT--AAT---ATG
* *
105991476 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTC-TAATAATCAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
* *
105991540 TATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAATTTG
66 TATTCTTATATGAATTTACTAAAACCATAATATATGATACTATAAAATATAATATG
* *
105991596 AA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
105991648 TAAAATAATT
Statistics
Matches: 160, Mismatches: 11, Indels: 8
0.89 0.06 0.04
Matches are distributed among these distances:
119 47 0.29
120 2 0.01
122 3 0.02
124 56 0.35
125 52 0.32
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.41
Consensus pattern (121 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
TATTCTTATATGAATTTACTAAAACCATAATATATGATACTATAAAATATAATATG
Found at i:105993641 original size:8 final size:8
Alignment explanation
Indices: 105993624--105993655 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
105993614 TTCAATCACC
*
105993624 AAAACCAT
1 AAAACAAT
105993632 AAAACAAT
1 AAAACAAT
105993640 AAAACAAT
1 AAAACAAT
105993648 AAAACAAT
1 AAAACAAT
105993656 CTGTTTAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.72, C:0.16, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAACAAT
Found at i:105997648 original size:31 final size:31
Alignment explanation
Indices: 105997614--105997673 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
105997604 TGGTGATCAA
105997614 AAAACAAAAAATT-G-AATAGTTGGGTGACTG
1 AAAA-AAAAAATTAGTAATAGTTGGGTGACTG
* *
105997644 AAAAAGAAATTTAGTAATAGTTGGGTGACT
1 AAAAAAAAAATTAGTAATAGTTGGGTGACT
105997674 ACTAGTGTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 6 0.23
30 5 0.19
31 15 0.58
ACGTcount: A:0.45, C:0.05, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAAAAAAAATTAGTAATAGTTGGGTGACTG
Found at i:106000714 original size:131 final size:131
Alignment explanation
Indices: 106000537--106000801 Score: 316
Period size: 131 Copynumber: 2.0 Consensus size: 131
106000527 TTTAATTATA
* * * *
106000537 AATTTTAATTTATTTTTATAATTCCACTAAAATCGGATAATGTGGACTAAATATGTTGTTACACA
1 AATTTTAATTTATTTTTATAATTCCACTAAAATCGAATAATATGGACCAAATATGTTATTACACA
* * * * * * *
106000602 TTATATATATATCATTTAATGATGTAGTATGTGCCACATGTTTAAAC-CTAATAGGTCACGTCAT
66 TGACATATACATCATTTAATAATATAGCATGTGCCACATGTATAAACTC-AATAGGTCACGTCAT
106000666 TC
130 TC
* ** * * **
106000668 AATTTTAGTTTATTTTTATAATTTTACTAAAATTGAATGATATGGACCAAATATGTTATTACATG
1 AATTTTAATTTATTTTTATAATTCCACTAAAATCGAATAATATGGACCAAATATGTTATTACACA
* * **
106000733 TGGCATATACATCATTTGATAATATAGCATGTGTGACATGTATAAACTCAATAGGTCACGTCATT
66 TGACATATACATCATTTAATAATATAGCATGTGCCACATGTATAAACTCAATAGGTCACGTCATT
106000798 C
131 C
106000799 AAT
1 AAT
106000802 ATGTTATATA
Statistics
Matches: 111, Mismatches: 22, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
131 110 0.99
132 1 0.01
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.40
Consensus pattern (131 bp):
AATTTTAATTTATTTTTATAATTCCACTAAAATCGAATAATATGGACCAAATATGTTATTACACA
TGACATATACATCATTTAATAATATAGCATGTGCCACATGTATAAACTCAATAGGTCACGTCATT
C
Found at i:106001243 original size:20 final size:20
Alignment explanation
Indices: 106001220--106001258 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
106001210 ATTTATATAT
* *
106001220 ATAACTCATTATTTAATTAA
1 ATAAATCATTATTCAATTAA
*
106001240 ATAAATTATTATTCAATTA
1 ATAAATCATTATTCAATTA
106001259 TACATAATAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (20 bp):
ATAAATCATTATTCAATTAA
Found at i:106003164 original size:18 final size:19
Alignment explanation
Indices: 106003138--106003173 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
106003128 TCGATTAGAT
*
106003138 TTAACTCCCT-AATTTCAC
1 TTAAATCCCTAAATTTCAC
106003156 TTAAATCCCTAAATTTCA
1 TTAAATCCCTAAATTTCA
106003174 ATTTTTCACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.33, C:0.28, G:0.00, T:0.39
Consensus pattern (19 bp):
TTAAATCCCTAAATTTCAC
Found at i:106003225 original size:28 final size:29
Alignment explanation
Indices: 106003171--106003225 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
106003161 TCCCTAAATT
* *
106003171 TCAATTTTTCACAATTTAGTCTCTAATAC
1 TCAAATTTTCACAATTTAGTCTATAATAC
*
106003200 TCAAATTTT-ACAATTTATTCTATAAT
1 TCAAATTTTCACAATTTAGTCTATAAT
106003226 TCAATTCTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 15 0.65
29 8 0.35
ACGTcount: A:0.35, C:0.16, G:0.02, T:0.47
Consensus pattern (29 bp):
TCAAATTTTCACAATTTAGTCTATAATAC
Found at i:106004510 original size:16 final size:15
Alignment explanation
Indices: 106004484--106004513 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
106004474 TATAATGCAC
106004484 ATAATCAAATAATAT
1 ATAATCAAATAATAT
106004499 ATAATACAAATAATA
1 ATAAT-CAAATAATA
106004514 GCCCAGTCGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (15 bp):
ATAATCAAATAATAT
Found at i:106023774 original size:22 final size:20
Alignment explanation
Indices: 106023749--106023788 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
106023739 AACAGGTAAC
*
106023749 TACTAAGGAGCAAACATAAAAG
1 TACTAAAGA-CAAA-ATAAAAG
106023771 TACTAAAGACAAAATAAA
1 TACTAAAGACAAAATAAA
106023789 CCAAAAACCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 4 0.24
22 8 0.47
ACGTcount: A:0.60, C:0.12, G:0.12, T:0.15
Consensus pattern (20 bp):
TACTAAAGACAAAATAAAAG
Found at i:106027014 original size:10 final size:10
Alignment explanation
Indices: 106027001--106027026 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
106026991 AATTTTAAAT
106027001 TTTTTTATGA
1 TTTTTTATGA
106027011 TTTTTTATGA
1 TTTTTTATGA
106027021 TTTTTT
1 TTTTTT
106027027 TTGAATGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (10 bp):
TTTTTTATGA
Found at i:106027015 original size:11 final size:11
Alignment explanation
Indices: 106026999--106027027 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
106026989 TTAATTTTAA
106026999 ATTTTTTTATG
1 ATTTTTTTATG
106027010 A-TTTTTTATG
1 ATTTTTTTATG
106027020 ATTTTTTT
1 ATTTTTTT
106027028 TGAATGTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.17, C:0.00, G:0.07, T:0.76
Consensus pattern (11 bp):
ATTTTTTTATG
Found at i:106027037 original size:22 final size:21
Alignment explanation
Indices: 106026993--106027047 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 21
106026983 TTGAACTTAA
106026993 TTTTAA-ATTTTTTTATGATT
1 TTTTAATATTTTTTTATGATT
106027013 TTTT-ATGATTTTTTT-TGAATGT
1 TTTTAAT-ATTTTTTTATG-AT-T
106027035 TTTTAATATTTTT
1 TTTTAATATTTTT
106027048 ATAATTTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
19 1 0.03
20 6 0.20
21 10 0.33
22 11 0.37
23 2 0.07
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.71
Consensus pattern (21 bp):
TTTTAATATTTTTTTATGATT
Found at i:106029706 original size:30 final size:30
Alignment explanation
Indices: 106029649--106029706 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
106029639 ATTTCAAATA
* * *
106029649 TAAAATATTTATTTTTATATAATAAAATTT
1 TAAAATAATTATTATTAAATAATAAAATTT
106029679 TAAAATAATTATATATTAAATAA-AAAAT
1 TAAAATAATTAT-TATTAAATAATAAAAT
106029707 AGAACTCTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 16 0.67
31 8 0.33
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (30 bp):
TAAAATAATTATTATTAAATAATAAAATTT
Found at i:106030045 original size:6 final size:6
Alignment explanation
Indices: 106030034--106030079 Score: 76
Period size: 6 Copynumber: 7.7 Consensus size: 6
106030024 TCTGCAGGCC
106030034 ATGGCT ATGGCT ATGGCT ATGGCT ATGGCT ATGGCT GA-GGCT ATGG
1 ATGGCT ATGGCT ATGGCT ATGGCT ATGGCT ATGGCT -ATGGCT ATGG
106030080 AGGATCATTA
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
5 1 0.03
6 36 0.95
7 1 0.03
ACGTcount: A:0.17, C:0.15, G:0.37, T:0.30
Consensus pattern (6 bp):
ATGGCT
Found at i:106033789 original size:3 final size:3
Alignment explanation
Indices: 106033781--106033836 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
106033771 ATCATGTTCC
106033781 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
106033829 TAT TAT TA
1 TAT TAT TA
106033837 CAAACACTTT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:106036532 original size:21 final size:20
Alignment explanation
Indices: 106036494--106036543 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 20
106036484 CCCGGCCCGG
*
106036494 TTTTTAATAAATACAAAAAAA
1 TTTTTAA-AAATAAAAAAAAA
*
106036515 TATTTTAAAAATAAAAAAATA
1 T-TTTTAAAAATAAAAAAAAA
106036536 TTTTTAAA
1 TTTTTAAA
106036544 GTATTTTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 7 0.27
21 13 0.50
22 6 0.23
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (20 bp):
TTTTTAAAAATAAAAAAAAA
Found at i:106037303 original size:22 final size:23
Alignment explanation
Indices: 106037278--106037321 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
106037268 TAATCCGCAC
106037278 AATTCAAAATTT-TAA-TATATTT
1 AATT-AAAATTTATAATTATATTT
*
106037300 AATTATAATTTATAATTATATT
1 AATTAAAATTTATAATTATATT
106037322 CTTCATTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 6 0.32
22 7 0.37
23 6 0.32
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (23 bp):
AATTAAAATTTATAATTATATTT
Found at i:106038182 original size:28 final size:27
Alignment explanation
Indices: 106038150--106038205 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 27
106038140 CGAATAGTTT
106038150 TAGACATCATATAAAAATTA-AATAGAAA
1 TAGACATCATA-AAAAATTATAATA-AAA
* *
106038178 TAGACATGATAAAAACTTATAATAAAA
1 TAGACATCATAAAAAATTATAATAAAA
106038205 T
1 T
106038206 TAATATAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 11 0.44
28 14 0.56
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.27
Consensus pattern (27 bp):
TAGACATCATAAAAAATTATAATAAAA
Found at i:106039449 original size:22 final size:21
Alignment explanation
Indices: 106039397--106039452 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 21
106039387 GAACAACTAA
*
106039397 ATAATGAATGACATATAATAT
1 ATAATAAATGACATATAATAT
106039418 ATCAAATAAATGAGCAATATAA-AT
1 AT--AATAAATGA-C-ATATAATAT
106039442 ATAATAAATGA
1 ATAATAAATGA
106039453 AATTACGAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
21 2 0.07
22 9 0.30
23 8 0.27
24 5 0.17
25 6 0.20
ACGTcount: A:0.57, C:0.05, G:0.09, T:0.29
Consensus pattern (21 bp):
ATAATAAATGACATATAATAT
Found at i:106046916 original size:68 final size:68
Alignment explanation
Indices: 106046807--106046940 Score: 259
Period size: 68 Copynumber: 2.0 Consensus size: 68
106046797 TAAAGAGTGC
106046807 ATGACATAGTTACTAATAAGAAAACAGAGAGTGCTTCGACAAAAGGAAACACAAATTTATTTAGC
1 ATGACATAGTTACTAATAAGAAAACAGAGAGTGCTTCGACAAAAGGAAACACAAATTTATTTAGC
106046872 TAA
66 TAA
*
106046875 ATGACGTAGTTACTAATAAGAAAACAGAGAGTGCTTCGACAAAAGGAAACACAAATTTATTTAGC
1 ATGACATAGTTACTAATAAGAAAACAGAGAGTGCTTCGACAAAAGGAAACACAAATTTATTTAGC
106046940 T
66 T
106046941 TAATTGAACA
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
68 65 1.00
ACGTcount: A:0.46, C:0.13, G:0.17, T:0.24
Consensus pattern (68 bp):
ATGACATAGTTACTAATAAGAAAACAGAGAGTGCTTCGACAAAAGGAAACACAAATTTATTTAGC
TAA
Found at i:106054474 original size:15 final size:15
Alignment explanation
Indices: 106054454--106054499 Score: 83
Period size: 15 Copynumber: 3.1 Consensus size: 15
106054444 TTCTGATTTC
*
106054454 CAGAGGTGGGGGGTT
1 CAGAGGTGAGGGGTT
106054469 CAGAGGTGAGGGGTT
1 CAGAGGTGAGGGGTT
106054484 CAGAGGTGAGGGGTT
1 CAGAGGTGAGGGGTT
106054499 C
1 C
106054500 TTCTTTGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.17, C:0.09, G:0.54, T:0.20
Consensus pattern (15 bp):
CAGAGGTGAGGGGTT
Found at i:106061737 original size:50 final size:50
Alignment explanation
Indices: 106061634--106061868 Score: 231
Period size: 50 Copynumber: 4.6 Consensus size: 50
106061624 GGTAAAGGGA
* *
106061634 TCCCATGTAAGACCATGTCTAGGACATGGCATT-GACATCCTTGAGATCATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTAG-CA-CC--GAG---ATGAGAGG
* *
106061690 TCCCATGTAAGACCATATTTGGGACATGGCGTTAGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTAGCACCGAGATGAGAGG
* * *
106061740 TCCCATGTAAGACCATGTCTAAGG-CATAGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCT-GGGACATGGCGTTAGCACCGAGATGAGAGG
* * * * * * * **
106061790 TTCCTTGTAAGACCATGTCTGGGACATGGCATGAGCATCGATATTAGAACA
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTAGCACCGAGATGAG-AGG
106061841 TCCCATGTAAGACCATGTCTGGGACATG
1 TCCCATGTAAGACCATGTCTGGGACATG
106061869 ACTTTGGCAT
Statistics
Matches: 152, Mismatches: 23, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
49 2 0.01
50 84 0.55
51 29 0.19
53 3 0.02
55 2 0.01
56 31 0.20
57 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCGTTAGCACCGAGATGAGAGG
Found at i:106063735 original size:19 final size:19
Alignment explanation
Indices: 106063713--106063752 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
106063703 AAAAGTGATG
*
106063713 TAAGCAAAATATATTAAAA
1 TAAGCAAAATATAATAAAA
*
106063732 TAAGTAAAATATAATAAAA
1 TAAGCAAAATATAATAAAA
106063751 TA
1 TA
106063753 TTTTTTAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.65, C:0.03, G:0.05, T:0.28
Consensus pattern (19 bp):
TAAGCAAAATATAATAAAA
Found at i:106071409 original size:14 final size:14
Alignment explanation
Indices: 106071390--106071420 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
106071380 ACTACTAGAA
106071390 TTATTTTATTAAAT
1 TTATTTTATTAAAT
106071404 TTATTTTATTAAAT
1 TTATTTTATTAAAT
106071418 TTA
1 TTA
106071421 GGTCCATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (14 bp):
TTATTTTATTAAAT
Found at i:106075749 original size:510 final size:511
Alignment explanation
Indices: 106074790--106075824 Score: 1820
Period size: 510 Copynumber: 2.0 Consensus size: 511
106074780 CAATTGCATG
* *
106074790 GCCAAGGTTTATGGTGCTCAATTGTGAGGCCAGGAACAAATATTTGAGCTATATGCATGAGAGTT
1 GCCAAGGTTTATGGTGATCAAATGTGAGGCCAGGAACAAATATTTGAGCTATATGCATGAGAGTT
* * * *
106074855 CCAATTGTCATGGGTATCTCAGATTTTCGGAAACTTTGGCTTGCAGTCCACACACAAAATTTGAG
66 ACAATTGTAATGGGTATATCAAATTTTCGGAAACTTTGGCTTGCAGTCCACACACAAAATTTGAG
106074920 GTGGAAAGGGCCAAATGCAGTGGGGAAGATGGGTTGGTGCACATAAAGAGCTGCCACAACAACAA
131 GTGGAAAGGGCCAAATGCAGTGGGGAAGATGGGTTGGTGCACATAAAGAGCTGCCACAACAACAA
* *
106074985 ATACTGCCAACGAGTCCAAAATGCTTCCATCACTGGAAACTCAAAAGAGCAGTATTGGATTTCTG
196 ATACTGCAAACGAGTCAAAAATGCTTCCATCACTGGAAACTCAAAAGAGCAGTATTGGATTTCTG
* * *
106075050 CAGCCGCCGACAAGCCGGAGGAAGGCCGATCCGAGGAGTCGTGCACGTTGTTCAAGCTTATCCCA
261 CAGCAGCCGACAAGCCGGAAGAAGGCCGATCCGAGGAGTCGTGCACGTTGTTCAAACTTATCCCA
* *
106075115 GTGGACACTGCAACAAATAAGATCCGACTTATGCATGTGCAATCAGGTTGCTATTTATGTTTATG
326 GTGGACACTGCAACAAATAAGATCCGAATTATGCATGTGCAATCAGGTTGCTATTTATGCTTATG
*
106075180 GTGGGTAGATTCTCCAACGTTTAATAAATGTGTGTTGGCAAACTACAAAGTTTTCGATGGTAATT
391 GTGGGTAGATTCTCCAACGTTTAATAAATGTGTGTTGGCAAACTACAAAGTTTTCGATGGTAACT
106075245 CCTGTGATCTCTTCACAGTCATCGACTGGGAGTTGCTTGCG-AAGCCATTTGCGTC
456 CCTGTGATCTCTTCACAGTCATCGACTGGGAGTTGCTTGCGAAAGCCATTTGCGTC
* *
106075300 GCCAAGGTTTATGGTGATCAAATGTGAGGCGAGGAACAAATATTTGAGCTATATGTATGAGAGTT
1 GCCAAGGTTTATGGTGATCAAATGTGAGGCCAGGAACAAATATTTGAGCTATATGCATGAGAGTT
* * *
106075365 ACGATTGTAATGGGTATATCAAATTTTCGGAAACTTTGGCTTTCAGTCCATACACAAAATTTGAG
66 ACAATTGTAATGGGTATATCAAATTTTCGGAAACTTTGGCTTGCAGTCCACACACAAAATTTGAG
106075430 GTGGAAAGGGCCAAATGCAGTGGGGAAGATGGGTTGGTGCACATAAAGAGCTGCCACAACAACAA
131 GTGGAAAGGGCCAAATGCAGTGGGGAAGATGGGTTGGTGCACATAAAGAGCTGCCACAACAACAA
*
106075495 ATACTGCAAACGAGTCAAAAATGTTTCCATCACTGGAAACTCAAAAGAGCAGTATTGGATTTCTG
196 ATACTGCAAACGAGTCAAAAATGCTTCCATCACTGGAAACTCAAAAGAGCAGTATTGGATTTCTG
* *
106075560 CAGCAGCCGACAAGCCGGAAGAAGGCCGGTCCGAGGAGTCGTGCACGTTGTTCAAACTTATCCCG
261 CAGCAGCCGACAAGCCGGAAGAAGGCCGATCCGAGGAGTCGTGCACGTTGTTCAAACTTATCCCA
106075625 GTGGACACTGCAACAAATAAGATCCGAATTATGCATGTGCAATCAGGTTGCTATTTATGCTTATG
326 GTGGACACTGCAACAAATAAGATCCGAATTATGCATGTGCAATCAGGTTGCTATTTATGCTTATG
* *
106075690 GTGGGTAGATTCTCCAACGTTTAATAACTGTGTGTTGGCAAACTACAGAGTTTTCGATGGTAACT
391 GTGGGTAGATTCTCCAACGTTTAATAAATGTGTGTTGGCAAACTACAAAGTTTTCGATGGTAACT
*
106075755 CCTGTGATCTCTTCACAGTCATCGACTGGGAGTTGCTTGCGAATAAGCCATTTTCGTC
456 CCTGTGATCTCTTCACAGTCATCGACTGGGAGTTGCTTGCG-A-AAGCCATTTGCGTC
106075813 GCCAAGGTTTAT
1 GCCAAGGTTTAT
106075825 CGTACTCAAA
Statistics
Matches: 497, Mismatches: 25, Indels: 3
0.95 0.05 0.01
Matches are distributed among these distances:
510 472 0.95
513 25 0.05
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (511 bp):
GCCAAGGTTTATGGTGATCAAATGTGAGGCCAGGAACAAATATTTGAGCTATATGCATGAGAGTT
ACAATTGTAATGGGTATATCAAATTTTCGGAAACTTTGGCTTGCAGTCCACACACAAAATTTGAG
GTGGAAAGGGCCAAATGCAGTGGGGAAGATGGGTTGGTGCACATAAAGAGCTGCCACAACAACAA
ATACTGCAAACGAGTCAAAAATGCTTCCATCACTGGAAACTCAAAAGAGCAGTATTGGATTTCTG
CAGCAGCCGACAAGCCGGAAGAAGGCCGATCCGAGGAGTCGTGCACGTTGTTCAAACTTATCCCA
GTGGACACTGCAACAAATAAGATCCGAATTATGCATGTGCAATCAGGTTGCTATTTATGCTTATG
GTGGGTAGATTCTCCAACGTTTAATAAATGTGTGTTGGCAAACTACAAAGTTTTCGATGGTAACT
CCTGTGATCTCTTCACAGTCATCGACTGGGAGTTGCTTGCGAAAGCCATTTGCGTC
Found at i:106078191 original size:13 final size:13
Alignment explanation
Indices: 106078175--106078200 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
106078165 CTTTGCACAT
106078175 TGTCTTCAACAGG
1 TGTCTTCAACAGG
106078188 TGTCTTCAACAGG
1 TGTCTTCAACAGG
106078201 CTCGCACTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (13 bp):
TGTCTTCAACAGG
Found at i:106079332 original size:13 final size:13
Alignment explanation
Indices: 106079316--106079341 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
106079306 CTTTGCACAT
106079316 TGTCTTCAACAGG
1 TGTCTTCAACAGG
106079329 TGTCTTCAACAGG
1 TGTCTTCAACAGG
106079342 CTCGCACTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (13 bp):
TGTCTTCAACAGG
Found at i:106080476 original size:13 final size:13
Alignment explanation
Indices: 106080460--106080485 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
106080450 CTTTGCACAT
106080460 TGTCTTCAACAGG
1 TGTCTTCAACAGG
106080473 TGTCTTCAACAGG
1 TGTCTTCAACAGG
106080486 CTCGCACTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (13 bp):
TGTCTTCAACAGG
Found at i:106081620 original size:13 final size:13
Alignment explanation
Indices: 106081604--106081629 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
106081594 CTTTGCACAT
106081604 TGTCTTCAACAGG
1 TGTCTTCAACAGG
106081617 TGTCTTCAACAGG
1 TGTCTTCAACAGG
106081630 CTCGCACTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (13 bp):
TGTCTTCAACAGG
Found at i:106082764 original size:13 final size:13
Alignment explanation
Indices: 106082748--106082773 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
106082738 CTTTGCACAT
106082748 TGTCTTCAACAGG
1 TGTCTTCAACAGG
106082761 TGTCTTCAACAGG
1 TGTCTTCAACAGG
106082774 CTCGCACTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (13 bp):
TGTCTTCAACAGG
Found at i:106083908 original size:13 final size:13
Alignment explanation
Indices: 106083892--106083917 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
106083882 CTTTGCACAT
106083892 TGTCTTCAACAGG
1 TGTCTTCAACAGG
106083905 TGTCTTCAACAGG
1 TGTCTTCAACAGG
106083918 CTCGCACTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (13 bp):
TGTCTTCAACAGG
Found at i:106085052 original size:13 final size:13
Alignment explanation
Indices: 106085036--106085061 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
106085026 CTTTGCACAT
106085036 TGTCTTCAACAGG
1 TGTCTTCAACAGG
106085049 TGTCTTCAACAGG
1 TGTCTTCAACAGG
106085062 CTCGCACTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (13 bp):
TGTCTTCAACAGG
Found at i:106086196 original size:13 final size:13
Alignment explanation
Indices: 106086180--106086205 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
106086170 CTTTGCACAT
106086180 TGTCTTCAACAGG
1 TGTCTTCAACAGG
106086193 TGTCTTCAACAGG
1 TGTCTTCAACAGG
106086206 CTCGCACTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (13 bp):
TGTCTTCAACAGG
Found at i:106087340 original size:13 final size:13
Alignment explanation
Indices: 106087324--106087349 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
106087314 CTTTGCACAT
106087324 TGTCTTCAACAGG
1 TGTCTTCAACAGG
106087337 TGTCTTCAACAGG
1 TGTCTTCAACAGG
106087350 CTCGCACTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (13 bp):
TGTCTTCAACAGG
Found at i:106096291 original size:21 final size:21
Alignment explanation
Indices: 106096265--106096306 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
106096255 CATGATTATT
*
106096265 TCAATGCAAAGTTTTCAGAAA
1 TCAATGCAAAATTTTCAGAAA
106096286 TCAATGCAAAATTTTCAGAAA
1 TCAATGCAAAATTTTCAGAAA
106096307 ATGTTCCTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.45, C:0.14, G:0.12, T:0.29
Consensus pattern (21 bp):
TCAATGCAAAATTTTCAGAAA
Found at i:106099485 original size:989 final size:989
Alignment explanation
Indices: 106097569--106103938 Score: 12722
Period size: 989 Copynumber: 6.4 Consensus size: 989
106097559 GGTAAACAAT
106097569 GTATTGGAAATTGGCCAACCATGCTGCTGTTACATTTTGTGGTTGAAGTGCATGCAGCTTGATGA
1 GTATTGGAAATTGGCCAACCATGCTGCTGTTACATTTTGTGGTTGAAGTGCATGCAGCTTGATGA
106097634 CATGCTGCAGCACATATGCTTGCTGTAACAGCAAGGTTTCTCTTTAGTTTCATTCTAATTAATCT
66 CATGCTGCAGCACATATGCTTGCTGTAACAGCAAGGTTTCTCTTTAGTTTCATTCTAATTAATCT
106097699 AGTTTAAAATGGACAAGTTGATGACAACTTGATGCATTAGGTGTTGAATGACTAGTTTAGGTGGC
131 AGTTTAAAATGGACAAGTTGATGACAACTTGATGCATTAGGTGTTGAATGACTAGTTTAGGTGGC
106097764 TTGTTTATGTGTACAAGCAATGTTTTAATAGTCCCAATGCTGATTAGTGGGGTTAGTTGACTATT
196 TTGTTTATGTGTACAAGCAATGTTTTAATAGTCCCAATGCTGATTAGTGGGGTTAGTTGACTATT
106097829 TGGTGATGTATTTGACTATAAATGTATGTTTTTTCTAGTTGAATGAATGAGCTGAATGAGCTATC
261 TGGTGATGTATTTGACTATAAATGTATGTTTTTTCTAGTTGAATGAATGAGCTGAATGAGCTATC
106097894 AGCCATTAGCTCCCTTGCTGCACATTTGTGAGCAAGTAAAAATGCTTCTTGCACCTTGCTTCATG
326 AGCCATTAGCTCCCTTGCTGCACATTTGTGAGCAAGTAAAAATGCTTCTTGCACCTTGCTTCATG
106097959 TTCTGTGCTCTTGTTCTCTCTTTTGTTGCTGCCTCTTGCACCAACAATTGGTATCATGAGCCTAT
391 TTCTGTGCTCTTGTTCTCTCTTTTGTTGCTGCCTCTTGCACCAACAATTGGTATCATGAGCCTAT
106098024 GTCTTACGGGACCATTGATTTTGCTTCCCCTGCTTGTTGAAAAGAAAGAAGCTGTCAAAGCACAA
456 GTCTTACGGGACCATTGATTTTGCTTCCCCTGCTTGTTGAAAAGAAAGAAGCTGTCAAAGCACAA
106098089 GCAAGTCATTAAGGACTGCTTGTAGAGAAGATAATATCGGCTCAAACTTATAAGATCCCCAAACT
521 GCAAGTCATTAAGGACTGCTTGTAGAGAAGATAATATCGGCTCAAACTTATAAGATCCCCAAACT
106098154 AGCTTGAATAAGCTGAAGGAGGAGTTTAAAGGAAAGGTGTGAGCTTTCCAAATGTGCAAGCTTAG
586 AGCTTGAATAAGCTGAAGGAGGAGTTTAAAGGAAAGGTGTGAGCTTTCCAAATGTGCAAGCTTAG
106098219 CAAGATGTCAAAGCTGCAAGCTTAGCAAAGTGCGAGCCTGATGAAGACACCTGTTGAAGACAATA
651 CAAGATGTCAAAGCTGCAAGCTTAGCAAAGTGCGAGCCTGATGAAGACACCTGTTGAAGACAATA
106098284 TGCAAAGATGTGAGTCTGTCAAAGGTGTGAGCTCAGCAACATGTGGAAGCTCAATGCGTGTTGTA
716 TGCAAAGATGTGAGTCTGTCAAAGGTGTGAGCTCAGCAACATGTGGAAGCTCAATGCGTGTTGTA
106098349 TAGTTGCAAGCCTCTTGAAGACAGTAAGCAAAGTGTGAGCCTGTCGAATTGCAAGCCAAAATGGC
781 TAGTTGCAAGCCTCTTGAAGACAGTAAGCAAAGTGTGAGCCTGTCGAATTGCAAGCCAAAATGGC
106098414 AGAATGAAGGCAAGCAACTATACTCACGAACTGTTTGTGCAAGAAGAAAATGAATTGGTCAGCTT
846 AGAATGAAGGCAAGCAACTATACTCACGAACTGTTTGTGCAAGAAGAAAATGAATTGGTCAGCTT
106098479 GAATCAAAGCATCTAAGAGCTGCCAAGTTCAAAAAACTTGATGAATGACTGGTATTTGCAGCATG
911 GAATCAAAGCATCTAAGAGCTGCCAAGTTCAAAAAACTTGATGAATGACTGGTATTTGCAGCATG
106098544 GAGTCCAAGGAGGA
976 GAGTCCAAGGAGGA
106098558 GTATTGGAAATTGGCCAACCATGCTGCTGTTACATTTTGTGGTTGAAGTGCATGCAGCTTGATGA
1 GTATTGGAAATTGGCCAACCATGCTGCTGTTACATTTTGTGGTTGAAGTGCATGCAGCTTGATGA
106098623 CATGCTGCAGCACATATGCTTGCTGTAACAGCAAGGTTTCTCTTTAGTTTCATTCTAATTAATCT
66 CATGCTGCAGCACATATGCTTGCTGTAACAGCAAGGTTTCTCTTTAGTTTCATTCTAATTAATCT
106098688 AGTTTAAAATGGACAAGTTGATGACAACTTGATGCATTAGGTGTTGAATGACTAGTTTAGGTGGC
131 AGTTTAAAATGGACAAGTTGATGACAACTTGATGCATTAGGTGTTGAATGACTAGTTTAGGTGGC
106098753 TTGTTTATGTGTACAAGCAATGTTTTAATAGTCCCAATGCTGATTAGTGGGGTTAGTTGACTATT
196 TTGTTTATGTGTACAAGCAATGTTTTAATAGTCCCAATGCTGATTAGTGGGGTTAGTTGACTATT
106098818 TGGTGATGTATTTGACTATAAATGTATGTTTTTTCTAGTTGAATGAATGAGCTGAATGAGCTATC
261 TGGTGATGTATTTGACTATAAATGTATGTTTTTTCTAGTTGAATGAATGAGCTGAATGAGCTATC
106098883 AGCCATTAGCTCCCTTGCTGCACATTTGTGAGCAAGTAAAAATGCTTCTTGCACCTTGCTTCATG
326 AGCCATTAGCTCCCTTGCTGCACATTTGTGAGCAAGTAAAAATGCTTCTTGCACCTTGCTTCATG
106098948 TTCTGTGCTCTTGTTCTCTCTTTTGTTGCTGCCTCTTGCACCAACAATTGGTATCATGAGCCTAT
391 TTCTGTGCTCTTGTTCTCTCTTTTGTTGCTGCCTCTTGCACCAACAATTGGTATCATGAGCCTAT
106099013 GTCTTACGGGACCATTGATTTTGCTTCCCCTGCTTGTTGAAAAGAAAGAAGCTGTCAAAGCACAA
456 GTCTTACGGGACCATTGATTTTGCTTCCCCTGCTTGTTGAAAAGAAAGAAGCTGTCAAAGCACAA
106099078 GCAAGTCATTAAGGACTGCTTGTAGAGAAGATAATATCGGCTCAAACTTATAAGATCCCCAAACT
521 GCAAGTCATTAAGGACTGCTTGTAGAGAAGATAATATCGGCTCAAACTTATAAGATCCCCAAACT
106099143 AGCTTGAATAAGCTGAAGGAGGAGTTTAAAGGAAAGGTGTGAGCTTTCCAAATGTGCAAGCTTAG
586 AGCTTGAATAAGCTGAAGGAGGAGTTTAAAGGAAAGGTGTGAGCTTTCCAAATGTGCAAGCTTAG
106099208 CAAGATGTCAAAGCTGCAAGCTTAGCAAAGTGCGAGCCTGATGAAGACACCTGTTGAAGACAATA
651 CAAGATGTCAAAGCTGCAAGCTTAGCAAAGTGCGAGCCTGATGAAGACACCTGTTGAAGACAATA
106099273 TGCAAAGATGTGAGTCTGTCAAAGGTGTGAGCTCAGCAACATGTGGAAGCTCAATGCGTGTTGTA
716 TGCAAAGATGTGAGTCTGTCAAAGGTGTGAGCTCAGCAACATGTGGAAGCTCAATGCGTGTTGTA
106099338 TAGTTGCAAGCCTCTTGAAGACAGTAAGCAAAGTGTGAGCCTGTCGAATTGCAAGCCAAAATGGC
781 TAGTTGCAAGCCTCTTGAAGACAGTAAGCAAAGTGTGAGCCTGTCGAATTGCAAGCCAAAATGGC
106099403 AGAATGAAGGCAAGCAACTATACTCACGAACTGTTTGTGCAAGAAGAAAATGAATTGGTCAGCTT
846 AGAATGAAGGCAAGCAACTATACTCACGAACTGTTTGTGCAAGAAGAAAATGAATTGGTCAGCTT
106099468 GAATCAAAGCATCTAAGAGCTGCCAAGTTCAAAAAACTTGATGAATGACTGGTATTTGCAGCATG
911 GAATCAAAGCATCTAAGAGCTGCCAAGTTCAAAAAACTTGATGAATGACTGGTATTTGCAGCATG
106099533 GAGTCCAAGGAGGA
976 GAGTCCAAGGAGGA
106099547 GTATTGGAAATTGGCCAACCATGCTGCTGTTACATTTTGTGGTTGAAGTGCATGCAGCTTGATGA
1 GTATTGGAAATTGGCCAACCATGCTGCTGTTACATTTTGTGGTTGAAGTGCATGCAGCTTGATGA
106099612 CATGCTGCAGCACATATGCTTGCTGTAACAGCAAGGTTTCTCTTTAGTTTCATTCTAATTAATCT
66 CATGCTGCAGCACATATGCTTGCTGTAACAGCAAGGTTTCTCTTTAGTTTCATTCTAATTAATCT
106099677 AGTTTAAAATGGACAAGTTGATGACAACTTGATGCATTAGGTGTTGAATGACTAGTTTAGGTGGC
131 AGTTTAAAATGGACAAGTTGATGACAACTTGATGCATTAGGTGTTGAATGACTAGTTTAGGTGGC
106099742 TTGTTTATGTGTACAAGCAATGTTTTAATAGTCCCAATGCTGATTAGTGGGGTTAGTTGACTATT
196 TTGTTTATGTGTACAAGCAATGTTTTAATAGTCCCAATGCTGATTAGTGGGGTTAGTTGACTATT
106099807 TGGTGATGTATTTGACTATAAATGTATGTTTTTTCTAGTTGAATGAATGAGCTGAATGAGCTATC
261 TGGTGATGTATTTGACTATAAATGTATGTTTTTTCTAGTTGAATGAATGAGCTGAATGAGCTATC
106099872 AGCCATTAGCTCCCTTGCTGCACATTTGTGAGCAAGTAAAAATGCTTCTTGCACCTTGCTTCATG
326 AGCCATTAGCTCCCTTGCTGCACATTTGTGAGCAAGTAAAAATGCTTCTTGCACCTTGCTTCATG
106099937 TTCTGTGCTCTTGTTCTCTCTTTTGTTGCTGCCTCTTGCACCAACAATTGGTATCATGAGCCTAT
391 TTCTGTGCTCTTGTTCTCTCTTTTGTTGCTGCCTCTTGCACCAACAATTGGTATCATGAGCCTAT
106100002 GTCTTACGGGACCATTGATTTTGCTTCCCCTGCTTGTTGAAAAGAAAGAAGCTGTCAAAGCACAA
456 GTCTTACGGGACCATTGATTTTGCTTCCCCTGCTTGTTGAAAAGAAAGAAGCTGTCAAAGCACAA
106100067 GCAAGTCATTAAGGACTGCTTGTAGAGAAGATAATATCGGCTCAAACTTATAAGATCCCCAAACT
521 GCAAGTCATTAAGGACTGCTTGTAGAGAAGATAATATCGGCTCAAACTTATAAGATCCCCAAACT
106100132 AGCTTGAATAAGCTGAAGGAGGAGTTTAAAGGAAAGGTGTGAGCTTTCCAAATGTGCAAGCTTAG
586 AGCTTGAATAAGCTGAAGGAGGAGTTTAAAGGAAAGGTGTGAGCTTTCCAAATGTGCAAGCTTAG
106100197 CAAGATGTCAAAGCTGCAAGCTTAGCAAAGTGCGAGCCTGATGAAGACACCTGTTGAAGACAATA
651 CAAGATGTCAAAGCTGCAAGCTTAGCAAAGTGCGAGCCTGATGAAGACACCTGTTGAAGACAATA
106100262 TGCAAAGATGTGAGTCTGTCAAAGGTGTGAGCTCAGCAACATGTGGAAGCTCAATGCGTGTTGTA
716 TGCAAAGATGTGAGTCTGTCAAAGGTGTGAGCTCAGCAACATGTGGAAGCTCAATGCGTGTTGTA
106100327 TAGTTGCAAGCCTCTTGAAGACAGTAAGCAAAGTGTGAGCCTGTCGAATTGCAAGCCAAAATGGC
781 TAGTTGCAAGCCTCTTGAAGACAGTAAGCAAAGTGTGAGCCTGTCGAATTGCAAGCCAAAATGGC
106100392 AGAATGAAGGCAAGCAACTATACTCACGAACTGTTTGTGCAAGAAGAAAATGAATTGGTCAGCTT
846 AGAATGAAGGCAAGCAACTATACTCACGAACTGTTTGTGCAAGAAGAAAATGAATTGGTCAGCTT
106100457 GAATCAAAGCATCTAAGAGCTGCCAAGTTCAAAAAACTTGATGAATGACTGGTATTTGCAGCATG
911 GAATCAAAGCATCTAAGAGCTGCCAAGTTCAAAAAACTTGATGAATGACTGGTATTTGCAGCATG
106100522 GAGTCCAAGGAGGA
976 GAGTCCAAGGAGGA
106100536 GTATTGGAAATTGGCCAACCATGCTGCTGTTACATTTTGTGGTTGAAGTGCATGCAGCTTGATGA
1 GTATTGGAAATTGGCCAACCATGCTGCTGTTACATTTTGTGGTTGAAGTGCATGCAGCTTGATGA
106100601 CATGCTGCAGCACATATGCTTGCTGTAACAGCAAGGTTTCTCTTTAGTTTCATTCTAATTAATCT
66 CATGCTGCAGCACATATGCTTGCTGTAACAGCAAGGTTTCTCTTTAGTTTCATTCTAATTAATCT
106100666 AGTTTAAAATGGACAAGTTGATGACAACTTGATGCATTAGGTGTTGAATGACTAGTTTAGGTGGC
131 AGTTTAAAATGGACAAGTTGATGACAACTTGATGCATTAGGTGTTGAATGACTAGTTTAGGTGGC
106100731 TTGTTTATGTGTACAAGCAATGTTTTAATAGTCCCAATGCTGATTAGTGGGGTTAGTTGACTATT
196 TTGTTTATGTGTACAAGCAATGTTTTAATAGTCCCAATGCTGATTAGTGGGGTTAGTTGACTATT
106100796 TGGTGATGTATTTGACTATAAATGTATGTTTTTTCTAGTTGAATGAATGAGCTGAATGAGCTATC
261 TGGTGATGTATTTGACTATAAATGTATGTTTTTTCTAGTTGAATGAATGAGCTGAATGAGCTATC
106100861 AGCCATTAGCTCCCTTGCTGCACATTTGTGAGCAAGTAAAAATGCTTCTTGCACCTTGCTTCATG
326 AGCCATTAGCTCCCTTGCTGCACATTTGTGAGCAAGTAAAAATGCTTCTTGCACCTTGCTTCATG
106100926 TTCTGTGCTCTTGTTCTCTCTTTTGTTGCTGCCTCTTGCACCAACAATTGGTATCATGAGCCTAT
391 TTCTGTGCTCTTGTTCTCTCTTTTGTTGCTGCCTCTTGCACCAACAATTGGTATCATGAGCCTAT
106100991 GTCTTACGGGACCATTGATTTTGCTTCCCCTGCTTGTTGAAAAGAAAGAAGCTGTCAAAGCACAA
456 GTCTTACGGGACCATTGATTTTGCTTCCCCTGCTTGTTGAAAAGAAAGAAGCTGTCAAAGCACAA
106101056 GCAAGTCATTAAGGACTGCTTGTAGAGAAGATAATATCGGCTCAAACTTATAAGATCCCCAAACT
521 GCAAGTCATTAAGGACTGCTTGTAGAGAAGATAATATCGGCTCAAACTTATAAGATCCCCAAACT
106101121 AGCTTGAATAAGCTGAAGGAGGAGTTTAAAGGAAAGGTGTGAGCTTTCCAAATGTGCAAGCTTAG
586 AGCTTGAATAAGCTGAAGGAGGAGTTTAAAGGAAAGGTGTGAGCTTTCCAAATGTGCAAGCTTAG
106101186 CAAGATGTCAAAGCTGCAAGCTTAGCAAAGTGCGAGCCTGATGAAGACACCTGTTGAAGACAATA
651 CAAGATGTCAAAGCTGCAAGCTTAGCAAAGTGCGAGCCTGATGAAGACACCTGTTGAAGACAATA
106101251 TGCAAAGATGTGAGTCTGTCAAAGGTGTGAGCTCAGCAACATGTGGAAGCTCAATGCGTGTTGTA
716 TGCAAAGATGTGAGTCTGTCAAAGGTGTGAGCTCAGCAACATGTGGAAGCTCAATGCGTGTTGTA
106101316 TAGTTGCAAGCCTCTTGAAGACAGTAAGCAAAGTGTGAGCCTGTCGAATTGCAAGCCAAAATGGC
781 TAGTTGCAAGCCTCTTGAAGACAGTAAGCAAAGTGTGAGCCTGTCGAATTGCAAGCCAAAATGGC
106101381 AGAATGAAGGCAAGCAACTATACTCACGAACTGTTTGTGCAAGAAGAAAATGAATTGGTCAGCTT
846 AGAATGAAGGCAAGCAACTATACTCACGAACTGTTTGTGCAAGAAGAAAATGAATTGGTCAGCTT
106101446 GAATCAAAGCATCTAAGAGCTGCCAAGTTCAAAAAACTTGATGAATGACTGGTATTTGCAGCATG
911 GAATCAAAGCATCTAAGAGCTGCCAAGTTCAAAAAACTTGATGAATGACTGGTATTTGCAGCATG
106101511 GAGTCCAAGGAGGA
976 GAGTCCAAGGAGGA
106101525 GTATTGGAAATTGGCCAACCATGCTGCTGTTACATTTTGTGGTTGAAGTGCATGCAGCTTGATGA
1 GTATTGGAAATTGGCCAACCATGCTGCTGTTACATTTTGTGGTTGAAGTGCATGCAGCTTGATGA
106101590 CATGCTGCAGCACATATGCTTGCTGTAACAGCAAGGTTTCTCTTTAGTTTCATTCTAATTAATCT
66 CATGCTGCAGCACATATGCTTGCTGTAACAGCAAGGTTTCTCTTTAGTTTCATTCTAATTAATCT
106101655 AGTTTAAAATGGACAAGTTGATGACAACTTGATGCATTAGGTGTTGAATGACTAGTTTAGGTGGC
131 AGTTTAAAATGGACAAGTTGATGACAACTTGATGCATTAGGTGTTGAATGACTAGTTTAGGTGGC
106101720 TTGTTTATGTGTACAAGCAATGTTTTAATAGTCCCAATGCTGATTAGTGGGGTTAGTTGACTATT
196 TTGTTTATGTGTACAAGCAATGTTTTAATAGTCCCAATGCTGATTAGTGGGGTTAGTTGACTATT
106101785 TGGTGATGTATTTGACTATAAATGTATGTTTTTTCTAGTTGAATGAATGAGCTGAATGAGCTATC
261 TGGTGATGTATTTGACTATAAATGTATGTTTTTTCTAGTTGAATGAATGAGCTGAATGAGCTATC
106101850 AGCCATTAGCTCCCTTGCTGCACATTTGTGAGCAAGTAAAAATGCTTCTTGCACCTTGCTTCATG
326 AGCCATTAGCTCCCTTGCTGCACATTTGTGAGCAAGTAAAAATGCTTCTTGCACCTTGCTTCATG
106101915 TTCTGTGCTCTTGTTCTCTCTTTTGTTGCTGCCTCTTGCACCAACAATTGGTATCATGAGCCTAT
391 TTCTGTGCTCTTGTTCTCTCTTTTGTTGCTGCCTCTTGCACCAACAATTGGTATCATGAGCCTAT
106101980 GTCTTACGGGACCATTGATTTTGCTTCCCCTGCTTGTTGAAAAGAAAGAAGCTGTCAAAGCACAA
456 GTCTTACGGGACCATTGATTTTGCTTCCCCTGCTTGTTGAAAAGAAAGAAGCTGTCAAAGCACAA
106102045 GCAAGTCATTAAGGACTGCTTGTAGAGAAGATAATATCGGCTCAAACTTATAAGATCCCCAAACT
521 GCAAGTCATTAAGGACTGCTTGTAGAGAAGATAATATCGGCTCAAACTTATAAGATCCCCAAACT
106102110 AGCTTGAATAAGCTGAAGGAGGAGTTTAAAGGAAAGGTGTGAGCTTTCCAAATGTGCAAGCTTAG
586 AGCTTGAATAAGCTGAAGGAGGAGTTTAAAGGAAAGGTGTGAGCTTTCCAAATGTGCAAGCTTAG
106102175 CAAGATGTCAAAGCTGCAAGCTTAGCAAAGTGCGAGCCTGATGAAGACACCTGTTGAAGACAATA
651 CAAGATGTCAAAGCTGCAAGCTTAGCAAAGTGCGAGCCTGATGAAGACACCTGTTGAAGACAATA
106102240 TGCAAAGATGTGAGTCTGTCAAAGGTGTGAGCTCAGCAACATGTGGAAGCTCAATGCGTGTTGTA
716 TGCAAAGATGTGAGTCTGTCAAAGGTGTGAGCTCAGCAACATGTGGAAGCTCAATGCGTGTTGTA
106102305 TAGTTGCAAGCCTCTTGAAGACAGTAAGCAAAGTGTGAGCCTGTCGAATTGCAAGCCAAAATGGC
781 TAGTTGCAAGCCTCTTGAAGACAGTAAGCAAAGTGTGAGCCTGTCGAATTGCAAGCCAAAATGGC
106102370 AGAATGAAGGCAAGCAACTATACTCACGAACTGTTTGTGCAAGAAGAAAATGAATTGGTCAGCTT
846 AGAATGAAGGCAAGCAACTATACTCACGAACTGTTTGTGCAAGAAGAAAATGAATTGGTCAGCTT
106102435 GAATCAAAGCATCTAAGAGCTGCCAAGTTCAAAAAACTTGATGAATGACTGGTATTTGCAGCATG
911 GAATCAAAGCATCTAAGAGCTGCCAAGTTCAAAAAACTTGATGAATGACTGGTATTTGCAGCATG
106102500 GAGTCCAAGGAGGA
976 GAGTCCAAGGAGGA
106102514 GTATTGGAAATTGGCCAACCATGCTGCTGTTACATTTTGTGGTTGAAGTGCATGCAGCTTGATGA
1 GTATTGGAAATTGGCCAACCATGCTGCTGTTACATTTTGTGGTTGAAGTGCATGCAGCTTGATGA
106102579 CATGCTGCAGCACATATGCTTGCTGTAACAGCAAGGTTTCTCTTTAGTTTCATTCTAATTAATCT
66 CATGCTGCAGCACATATGCTTGCTGTAACAGCAAGGTTTCTCTTTAGTTTCATTCTAATTAATCT
106102644 AGTTTAAAATGGACAAGTTGATGACAACTTGATGCATTAGGTGTTGAATGACTAGTTTAGGTGGC
131 AGTTTAAAATGGACAAGTTGATGACAACTTGATGCATTAGGTGTTGAATGACTAGTTTAGGTGGC
106102709 TTGTTTATGTGTACAAGCAATGTTTTAATAGTCCCAATGCTGATTAGTGGGGTTAGTTGACTATT
196 TTGTTTATGTGTACAAGCAATGTTTTAATAGTCCCAATGCTGATTAGTGGGGTTAGTTGACTATT
106102774 TGGTGATGTATTTGACTATAAATGTATGTTTTTTCTAGTTGAATGAATGAGCTGAATGAGCTATC
261 TGGTGATGTATTTGACTATAAATGTATGTTTTTTCTAGTTGAATGAATGAGCTGAATGAGCTATC
106102839 AGCCATTAGCTCCCTTGCTGCACATTTGTGAGCAAGTAAAAATGCTTCTTGCACCTTGCTTCATG
326 AGCCATTAGCTCCCTTGCTGCACATTTGTGAGCAAGTAAAAATGCTTCTTGCACCTTGCTTCATG
106102904 TTCTGTGCTCTTGTTCTCTCTTTTGTTGCTGCCTCTTGCACCAACAATTGGTATCATGAGCCTAT
391 TTCTGTGCTCTTGTTCTCTCTTTTGTTGCTGCCTCTTGCACCAACAATTGGTATCATGAGCCTAT
106102969 GTCTTACGGGACCATTGATTTTGCTTCCCCTGCTTGTTGAAAAGAAAGAAGCTGTCAAAGCACAA
456 GTCTTACGGGACCATTGATTTTGCTTCCCCTGCTTGTTGAAAAGAAAGAAGCTGTCAAAGCACAA
106103034 GCAAGTCATTAAGGACTGCTTGTAGAGAAGATAATATCGGCTCAAACTTATAAGATCCCCAAACT
521 GCAAGTCATTAAGGACTGCTTGTAGAGAAGATAATATCGGCTCAAACTTATAAGATCCCCAAACT
106103099 AGCTTGAATAAGCTGAAGGAGGAGTTTAAAGGAAAGGTGTGAGCTTTCCAAATGTGCAAGCTTAG
586 AGCTTGAATAAGCTGAAGGAGGAGTTTAAAGGAAAGGTGTGAGCTTTCCAAATGTGCAAGCTTAG
106103164 CAAGATGTCAAAGCTGCAAGCTTAGCAAAGTGCGAGCCTGATGAAGACACCTGTTGAAGACAATA
651 CAAGATGTCAAAGCTGCAAGCTTAGCAAAGTGCGAGCCTGATGAAGACACCTGTTGAAGACAATA
106103229 TGCAAAGATGTGAGTCTGTCAAAGGTGTGAGCTCAGCAACATGTGGAAGCTCAATGCGTGTTGTA
716 TGCAAAGATGTGAGTCTGTCAAAGGTGTGAGCTCAGCAACATGTGGAAGCTCAATGCGTGTTGTA
106103294 TAGTTGCAAGCCTCTTGAAGACAGTAAGCAAAGTGTGAGCCTGTCGAATTGCAAGCCAAAATGGC
781 TAGTTGCAAGCCTCTTGAAGACAGTAAGCAAAGTGTGAGCCTGTCGAATTGCAAGCCAAAATGGC
106103359 AGAATGAAGGCAAGCAACTATACTCACGAACTGTTTGTGCAAGAAGAAAATGAATTGGTCAGCTT
846 AGAATGAAGGCAAGCAACTATACTCACGAACTGTTTGTGCAAGAAGAAAATGAATTGGTCAGCTT
106103424 GAATCAAAGCATCTAAGAGCTGCCAAGTTCAAAAAACTTGATGAATGACTGGTATTTGCAGCATG
911 GAATCAAAGCATCTAAGAGCTGCCAAGTTCAAAAAACTTGATGAATGACTGGTATTTGCAGCATG
106103489 GAGTCCAAGGAGGA
976 GAGTCCAAGGAGGA
106103503 GTATTGGAAATTGGCCAACCATGCTGCTGTTACATTTTGTGGTTGAAGTGCATGCAGCTTGATGA
1 GTATTGGAAATTGGCCAACCATGCTGCTGTTACATTTTGTGGTTGAAGTGCATGCAGCTTGATGA
106103568 CATGCTGCAGCACATATGCTTGCTGTAACAGCAAGGTTTCTCTTTAGTTTCATTCTAATTAATCT
66 CATGCTGCAGCACATATGCTTGCTGTAACAGCAAGGTTTCTCTTTAGTTTCATTCTAATTAATCT
*
106103633 AGTTTAAAAGGGACAAGTTGATGACAACTTGATGCATTAGGTGTTGAATGACTAGTTTAGGTGGC
131 AGTTTAAAATGGACAAGTTGATGACAACTTGATGCATTAGGTGTTGAATGACTAGTTTAGGTGGC
*
106103698 TTGTTTATGTGTACAAGCAATGTTTTAATAGTCCCAAAGCTGATTAGTGGGGTTAGTTGACTATT
196 TTGTTTATGTGTACAAGCAATGTTTTAATAGTCCCAATGCTGATTAGTGGGGTTAGTTGACTATT
106103763 TGGTGATGTATTTGACTATAAATGTATGTTTTTTCTAGTTGAATGAATGAGCTGAATGAGCTATC
261 TGGTGATGTATTTGACTATAAATGTATGTTTTTTCTAGTTGAATGAATGAGCTGAATGAGCTATC
106103828 AGCCATTAGCTCCCTTGCTGCACATTTGTGAGCAAGTAAAAATGCTTCTTGCACCTTGCTTCATG
326 AGCCATTAGCTCCCTTGCTGCACATTTGTGAGCAAGTAAAAATGCTTCTTGCACCTTGCTTCATG
106103893 TTCTGTGCTCTTGTTCTCTCTTTTGTTGCTGCCTCTTGCACCAACA
391 TTCTGTGCTCTTGTTCTCTCTTTTGTTGCTGCCTCTTGCACCAACA
106103939 CAATGCAACA
Statistics
Matches: 5379, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
989 5379 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.30
Consensus pattern (989 bp):
GTATTGGAAATTGGCCAACCATGCTGCTGTTACATTTTGTGGTTGAAGTGCATGCAGCTTGATGA
CATGCTGCAGCACATATGCTTGCTGTAACAGCAAGGTTTCTCTTTAGTTTCATTCTAATTAATCT
AGTTTAAAATGGACAAGTTGATGACAACTTGATGCATTAGGTGTTGAATGACTAGTTTAGGTGGC
TTGTTTATGTGTACAAGCAATGTTTTAATAGTCCCAATGCTGATTAGTGGGGTTAGTTGACTATT
TGGTGATGTATTTGACTATAAATGTATGTTTTTTCTAGTTGAATGAATGAGCTGAATGAGCTATC
AGCCATTAGCTCCCTTGCTGCACATTTGTGAGCAAGTAAAAATGCTTCTTGCACCTTGCTTCATG
TTCTGTGCTCTTGTTCTCTCTTTTGTTGCTGCCTCTTGCACCAACAATTGGTATCATGAGCCTAT
GTCTTACGGGACCATTGATTTTGCTTCCCCTGCTTGTTGAAAAGAAAGAAGCTGTCAAAGCACAA
GCAAGTCATTAAGGACTGCTTGTAGAGAAGATAATATCGGCTCAAACTTATAAGATCCCCAAACT
AGCTTGAATAAGCTGAAGGAGGAGTTTAAAGGAAAGGTGTGAGCTTTCCAAATGTGCAAGCTTAG
CAAGATGTCAAAGCTGCAAGCTTAGCAAAGTGCGAGCCTGATGAAGACACCTGTTGAAGACAATA
TGCAAAGATGTGAGTCTGTCAAAGGTGTGAGCTCAGCAACATGTGGAAGCTCAATGCGTGTTGTA
TAGTTGCAAGCCTCTTGAAGACAGTAAGCAAAGTGTGAGCCTGTCGAATTGCAAGCCAAAATGGC
AGAATGAAGGCAAGCAACTATACTCACGAACTGTTTGTGCAAGAAGAAAATGAATTGGTCAGCTT
GAATCAAAGCATCTAAGAGCTGCCAAGTTCAAAAAACTTGATGAATGACTGGTATTTGCAGCATG
GAGTCCAAGGAGGA
Found at i:106113473 original size:27 final size:28
Alignment explanation
Indices: 106113431--106113500 Score: 83
Period size: 27 Copynumber: 2.6 Consensus size: 28
106113421 TAGTGGAGGG
*
106113431 TAACTGATTGGTGGCAACA-AAGGTGCC
1 TAACTGATTGGCGGCAACAGAAGGTGCC
*
106113458 TAACTGATTGGCGGC-ACAGATGGTGCC
1 TAACTGATTGGCGGCAACAGAAGGTGCC
*
106113485 -ATACTGATTAGCGGCA
1 TA-ACTGATTGGCGGCA
106113501 CCGAATCGTG
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
26 4 0.11
27 33 0.89
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (28 bp):
TAACTGATTGGCGGCAACAGAAGGTGCC
Found at i:106113761 original size:16 final size:15
Alignment explanation
Indices: 106113740--106113769 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
106113730 AATAAAAATA
106113740 TATTATTTTAGTATTT
1 TATTATTTTA-TATTT
106113756 TATTATTTTATATT
1 TATTATTTTATATT
106113770 ATTTCAGACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (15 bp):
TATTATTTTATATTT
Found at i:106114116 original size:8 final size:8
Alignment explanation
Indices: 106114094--106114162 Score: 66
Period size: 8 Copynumber: 8.1 Consensus size: 8
106114084 AATAAAAATA
106114094 TATTATTT
1 TATTATTT
**
106114102 TCGTATTT
1 TATTATTT
106114110 TATTATTTT
1 TATTA-TTT
106114119 ATATTATTT
1 -TATTATTT
* *
106114128 TAGTACATT
1 TATTA-TTT
106114137 TATTATTT
1 TATTATTT
106114145 TATTATTT
1 TATTATTT
106114153 TATATATTT
1 TAT-TATTT
106114162 T
1 T
106114163 GTCTGAAATA
Statistics
Matches: 49, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
8 26 0.53
9 18 0.37
10 5 0.10
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.68
Consensus pattern (8 bp):
TATTATTT
Found at i:106114121 original size:26 final size:27
Alignment explanation
Indices: 106114092--106114154 Score: 87
Period size: 26 Copynumber: 2.4 Consensus size: 27
106114082 TCAATAAAAA
* *
106114092 TATATTATTTTCGTA-TTTTATTATTT
1 TATATTATTTTAGTACATTTATTATTT
106114118 TATATTATTTTAGTACATTTATTA-TT
1 TATATTATTTTAGTACATTTATTATTT
106114144 T-TATTATTTTA
1 TATATTATTTTA
106114155 TATATTTTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
25 10 0.29
26 17 0.50
27 7 0.21
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.67
Consensus pattern (27 bp):
TATATTATTTTAGTACATTTATTATTT
Found at i:106114160 original size:17 final size:17
Alignment explanation
Indices: 106114105--106114162 Score: 73
Period size: 17 Copynumber: 3.4 Consensus size: 17
106114095 ATTATTTTCG
106114105 TATTTTATTATTTTATA
1 TATTTTATTATTTTATA
* *
106114122 TTATTTTAGTACATTTAT-
1 -TATTTTATTA-TTTTATA
106114140 TATTTTATTATTTTATA
1 TATTTTATTATTTTATA
106114157 TATTTT
1 TATTTT
106114163 GTCTGAAATA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
16 5 0.15
17 15 0.44
18 9 0.26
19 5 0.15
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.69
Consensus pattern (17 bp):
TATTTTATTATTTTATA
Found at i:106114623 original size:7 final size:7
Alignment explanation
Indices: 106114611--106114657 Score: 51
Period size: 7 Copynumber: 6.6 Consensus size: 7
106114601 ACTATATTAT
106114611 TTTAATA
1 TTTAATA
106114618 TTTAATA
1 TTTAATA
*
106114625 TTTGATA
1 TTTAATA
106114632 TTTAATA
1 TTTAATA
*
106114639 ATTAATTAA
1 TTTAA-T-A
106114648 TTT-ATA
1 TTTAATA
106114654 TTTA
1 TTTA
106114658 TTTACTGATG
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
6 4 0.12
7 24 0.73
8 2 0.06
9 3 0.09
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (7 bp):
TTTAATA
Found at i:106114978 original size:8 final size:8
Alignment explanation
Indices: 106114965--106114991 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
106114955 AATTAAATCA
106114965 AATTTTAT
1 AATTTTAT
106114973 AATTTTAT
1 AATTTTAT
106114981 AATTTTAT
1 AATTTTAT
106114989 AAT
1 AAT
106114992 ATTGTAATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (8 bp):
AATTTTAT
Found at i:106114999 original size:16 final size:16
Alignment explanation
Indices: 106114965--106114999 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
106114955 AATTAAATCA
*
106114965 AATTTTATAATTTTAT
1 AATTTTATAATATTAT
*
106114981 AATTTTATAATATTGT
1 AATTTTATAATATTAT
106114997 AAT
1 AAT
106115000 CAAATTTGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (16 bp):
AATTTTATAATATTAT
Found at i:106119480 original size:30 final size:30
Alignment explanation
Indices: 106119445--106119502 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
106119435 CTGGGCATTT
* *
106119445 CCACACGGGCTGGCCACACACCCTTGTGAG
1 CCACACGGGCTAGCCACACACCCATGTGAG
*
106119475 CCACACGGGCTAGCCACACGCCCATGTG
1 CCACACGGGCTAGCCACACACCCATGTG
106119503 CCAATCCGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.21, C:0.41, G:0.26, T:0.12
Consensus pattern (30 bp):
CCACACGGGCTAGCCACACACCCATGTGAG
Found at i:106120589 original size:14 final size:14
Alignment explanation
Indices: 106120570--106120596 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
106120560 GTTTTTAGTT
106120570 TAATTTTTGTTTTC
1 TAATTTTTGTTTTC
106120584 TAATTTTTGTTTT
1 TAATTTTTGTTTT
106120597 ACTTGCTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.04, G:0.07, T:0.74
Consensus pattern (14 bp):
TAATTTTTGTTTTC
Found at i:106124117 original size:17 final size:16
Alignment explanation
Indices: 106124095--106124126 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
106124085 TTTAATCCTT
106124095 TAAAAATTATAAAATTA
1 TAAAAATT-TAAAATTA
106124112 TAAAAATTTAAAATT
1 TAAAAATTTAAAATT
106124127 TAATTTTGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
TAAAAATTTAAAATTA
Found at i:106131447 original size:14 final size:14
Alignment explanation
Indices: 106131428--106131456 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
106131418 ATAAACACAA
106131428 AAAAAAATAAAAAT
1 AAAAAAATAAAAAT
106131442 AAAAAAATAAAAAT
1 AAAAAAATAAAAAT
106131456 A
1 A
106131457 TTTTAAAGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (14 bp):
AAAAAAATAAAAAT
Found at i:106131493 original size:14 final size:13
Alignment explanation
Indices: 106131471--106131504 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
106131461 AAAGTATTTT
*
106131471 AAAATTAAAAATTA
1 AAAAATAAAAA-TA
106131485 AAAAATAAAAATA
1 AAAAATAAAAATA
106131498 AAAAATA
1 AAAAATA
106131505 TATATTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.47
14 10 0.53
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (13 bp):
AAAAATAAAAATA
Found at i:106133499 original size:16 final size:16
Alignment explanation
Indices: 106133480--106133515 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
106133470 TCAATACTAA
*
106133480 TTTTTTAACATTTAAT
1 TTTTTTAACACTTAAT
*
106133496 TTTTTTAATACTTAAT
1 TTTTTTAACACTTAAT
106133512 TTTT
1 TTTT
106133516 CAATTTATCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTTTTAACACTTAAT
Found at i:106136057 original size:340 final size:340
Alignment explanation
Indices: 106135437--106136118 Score: 1247
Period size: 340 Copynumber: 2.0 Consensus size: 340
106135427 CAAACGAGTC
106135437 AAAAATGTTTCCATCACTGGAAACTCAAAAGAGCAGTATTGGATTTCTGCAGCAGCCGACAAGCC
1 AAAAATGTTTCCATCACTGGAAACTCAAAAGAGCAGTATTGGATTTCTGCAGCAGCCGACAAGCC
* *
106135502 GGAGGAAGGCCGATCCGAGGAGTCGTGCACGTTGTTCAAGCTTATCCCAGTGGACACTGCAACAA
66 GGAGGAAGGCCAATCCGAGGAGTCGTGCACGTTGTTCAAACTTATCCCAGTGGACACTGCAACAA
*
106135567 ATAAGATCCGAGTTATGCATGTGCAATCAGGTTGCTATTTATGCTTATGGTGGGTAAATTCTCCA
131 ATAAGATCCGAATTATGCATGTGCAATCAGGTTGCTATTTATGCTTATGGTGGGTAAATTCTCCA
* *
106135632 ACGTTTAATAACTGTGTGTTGGCAAACTACAAAGTTTTTGATGGTAATTCCTGTGATCTCTTCAC
196 ACGTTTAATAACTGTGTGTTGGCAAACTACAAAGTTTTCGATGGTAACTCCTGTGATCTCTTCAC
* *
106135697 AGTCATCGACTGGGAGTTGCTTGCGAATAAGCCATTTTCGTCGCCAAGGTTTATCGTACTCAAAT
261 AGTCATCGACTGGGAGTTGCTTGCCAATAAGCCATTTGCGTCGCCAAGGTTTATCGTACTCAAAT
106135762 CCCATCAGAATAACA
326 CCCATCAGAATAACA
*
106135777 AAAAATGTTTCCATCACTGGAAACTCAAGAGAGCAGTATTGGATTTCTGCAGCAGCCGACAAGCC
1 AAAAATGTTTCCATCACTGGAAACTCAAAAGAGCAGTATTGGATTTCTGCAGCAGCCGACAAGCC
*
106135842 GGAGGAAGGCCAATCCGAGGAGTCGTGCACGTTGTTCAAACTTATCCCGGTGGACACTGCAACAA
66 GGAGGAAGGCCAATCCGAGGAGTCGTGCACGTTGTTCAAACTTATCCCAGTGGACACTGCAACAA
* *
106135907 ATAAGATCCGAATTATGCATGTGCAATCAGGTTGTTATTTATGCTTATGGTGGGTAGATTCTCCA
131 ATAAGATCCGAATTATGCATGTGCAATCAGGTTGCTATTTATGCTTATGGTGGGTAAATTCTCCA
106135972 ACGTTTAATAACTGTGTGTTGGCAAACTACAAAGTTTTCGATGGTAACTCCTGTGATCTCTTCAC
196 ACGTTTAATAACTGTGTGTTGGCAAACTACAAAGTTTTCGATGGTAACTCCTGTGATCTCTTCAC
* *
106136037 GGTCATCGACTGGGAGTTGCTTGCCAATAAGCCATTTGCGTCGCCAAGGTTTATCGTGCTCAAAT
261 AGTCATCGACTGGGAGTTGCTTGCCAATAAGCCATTTGCGTCGCCAAGGTTTATCGTACTCAAAT
106136102 CCCATCAGAATAACA
326 CCCATCAGAATAACA
106136117 AA
1 AA
106136119 TACTTGGGCT
Statistics
Matches: 329, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
340 329 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (340 bp):
AAAAATGTTTCCATCACTGGAAACTCAAAAGAGCAGTATTGGATTTCTGCAGCAGCCGACAAGCC
GGAGGAAGGCCAATCCGAGGAGTCGTGCACGTTGTTCAAACTTATCCCAGTGGACACTGCAACAA
ATAAGATCCGAATTATGCATGTGCAATCAGGTTGCTATTTATGCTTATGGTGGGTAAATTCTCCA
ACGTTTAATAACTGTGTGTTGGCAAACTACAAAGTTTTCGATGGTAACTCCTGTGATCTCTTCAC
AGTCATCGACTGGGAGTTGCTTGCCAATAAGCCATTTGCGTCGCCAAGGTTTATCGTACTCAAAT
CCCATCAGAATAACA
Found at i:106142163 original size:4 final size:4
Alignment explanation
Indices: 106142154--106142371 Score: 436
Period size: 4 Copynumber: 54.5 Consensus size: 4
106142144 AGACTTAATG
106142154 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
106142202 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
106142250 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
106142298 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
106142346 GTAT GTAT GTAT GTAT GTAT GTAT GT
1 GTAT GTAT GTAT GTAT GTAT GTAT GT
106142372 GTATTGAGTA
Statistics
Matches: 214, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 214 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
GTAT
Found at i:106143337 original size:9 final size:9
Alignment explanation
Indices: 106143323--106143428 Score: 51
Period size: 9 Copynumber: 11.8 Consensus size: 9
106143313 TTTGGTTAAA
106143323 AATTAACTG
1 AATTAACTG
*
106143332 AATTAA-TCA
1 AATTAACT-G
106143341 AATTACACT-
1 AATTA-ACTG
* *
106143350 AATTACCCG
1 AATTAACTG
106143359 AATTAA-TCG
1 AATTAACT-G
106143368 AATTAA-TCG
1 AATTAACT-G
**
106143377 AATTAACAA
1 AATTAACTG
*
106143386 AATTAACCG
1 AATTAACTG
*
106143395 AATT-ACTCA
1 AATTAACT-G
**
106143404 AATTAACCA
1 AATTAACTG
106143413 AATTAACTG
1 AATTAACTG
106143422 AATTAAC
1 AATTAAC
106143429 CAAATCGAAT
Statistics
Matches: 75, Mismatches: 14, Indels: 16
0.71 0.13 0.15
Matches are distributed among these distances:
8 4 0.05
9 67 0.89
10 3 0.04
11 1 0.01
ACGTcount: A:0.48, C:0.17, G:0.06, T:0.29
Consensus pattern (9 bp):
AATTAACTG
Found at i:106143345 original size:18 final size:18
Alignment explanation
Indices: 106143322--106143433 Score: 95
Period size: 18 Copynumber: 6.2 Consensus size: 18
106143312 TTTTGGTTAA
*
106143322 AAATTAACTGAATTAATC
1 AAATTAACTGAATTAACC
*
106143340 AAATTACACT-AATTACCC
1 AAATTA-ACTGAATTAACC
* *
106143358 GAATTAA-TCGAATTAATC
1 AAATTAACT-GAATTAACC
* **
106143376 GAATTAACAAAATTAACC
1 AAATTAACTGAATTAACC
* *
106143394 GAATT-ACTCAAATTAACC
1 AAATTAACT-GAATTAACC
106143412 AAATTAACTGAATTAACC
1 AAATTAACTGAATTAACC
106143430 AAAT
1 AAAT
106143434 CGAATCACTA
Statistics
Matches: 77, Mismatches: 11, Indels: 12
0.77 0.11 0.12
Matches are distributed among these distances:
16 1 0.01
17 3 0.04
18 67 0.87
19 6 0.08
ACGTcount: A:0.49, C:0.17, G:0.05, T:0.29
Consensus pattern (18 bp):
AAATTAACTGAATTAACC
Found at i:106143380 original size:27 final size:27
Alignment explanation
Indices: 106143322--106143433 Score: 91
Period size: 27 Copynumber: 4.1 Consensus size: 27
106143312 TTTTGGTTAA
** * **
106143322 AAATTAACTGAATTAATCAAATTACAC
1 AAATTAACCAAATTAATCGAATTAATC
* * *
106143349 TAATTACCCGAATTAATCGAATTAATC
1 AAATTAACCAAATTAATCGAATTAATC
* * * *
106143376 GAATTAACAAAATTAACCGAATTACTC
1 AAATTAACCAAATTAATCGAATTAATC
*
106143403 AAATTAACCAAATTAA-CTGAATTAACC
1 AAATTAACCAAATTAATC-GAATTAATC
106143430 AAAT
1 AAAT
106143434 CGAATCACTA
Statistics
Matches: 68, Mismatches: 16, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
26 1 0.01
27 67 0.99
ACGTcount: A:0.49, C:0.17, G:0.05, T:0.29
Consensus pattern (27 bp):
AAATTAACCAAATTAATCGAATTAATC
Found at i:106143486 original size:37 final size:36
Alignment explanation
Indices: 106143435--106143524 Score: 119
Period size: 37 Copynumber: 2.4 Consensus size: 36
106143425 TAACCAAATC
*
106143435 GAATCACTACATAATTAAAAACATTACATAAATCTTT
1 GAATAACTACATAATTAAAAACATTACATAAATC-TT
* *
106143472 GAATAACTACATAATTAAAAATATTACATAAGTCTT
1 GAATAACTACATAATTAAAAACATTACATAAATCTT
106143508 GAAATTAAC-ACATAATT
1 G-AA-TAACTACATAATT
106143525 GAAATGCAAG
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
36 3 0.06
37 41 0.85
38 4 0.08
ACGTcount: A:0.50, C:0.13, G:0.04, T:0.32
Consensus pattern (36 bp):
GAATAACTACATAATTAAAAACATTACATAAATCTT
Found at i:106143501 original size:17 final size:17
Alignment explanation
Indices: 106143442--106143502 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
106143432 ATCGAATCAC
*
106143442 TACATAATTAAAAACAT
1 TACATAATTAAAAATAT
*** *
106143459 TACATAAATCTTTGAATAAC
1 TACAT-AAT-TAAAAAT-AT
106143479 TACATAATTAAAAATAT
1 TACATAATTAAAAATAT
106143496 TACATAA
1 TACATAA
106143503 GTCTTGAAAT
Statistics
Matches: 32, Mismatches: 9, Indels: 6
0.68 0.19 0.13
Matches are distributed among these distances:
17 13 0.41
18 7 0.22
19 6 0.19
20 6 0.19
ACGTcount: A:0.54, C:0.11, G:0.02, T:0.33
Consensus pattern (17 bp):
TACATAATTAAAAATAT
Found at i:106145236 original size:39 final size:39
Alignment explanation
Indices: 106145182--106145258 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
106145172 ATCCCAATGG
*
106145182 ACTCACCCTTATGACTAGAAATTGGACAAAAGTTTAAAT
1 ACTCACCCTCATGACTAGAAATTGGACAAAAGTTTAAAT
106145221 ACTCACCCTCATGACTAGAAATTGGACAAAAGTTTAAA
1 ACTCACCCTCATGACTAGAAATTGGACAAAAGTTTAAA
106145259 ATCTTTTTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.42, C:0.19, G:0.13, T:0.26
Consensus pattern (39 bp):
ACTCACCCTCATGACTAGAAATTGGACAAAAGTTTAAAT
Found at i:106161421 original size:16 final size:16
Alignment explanation
Indices: 106161400--106161430 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
106161390 CTCTTGTCGA
106161400 TGTTATGTTACACTGG
1 TGTTATGTTACACTGG
106161416 TGTTATGTTACACTG
1 TGTTATGTTACACTG
106161431 AAGGGGTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.13, G:0.23, T:0.45
Consensus pattern (16 bp):
TGTTATGTTACACTGG
Found at i:106169614 original size:29 final size:29
Alignment explanation
Indices: 106169572--106169630 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
106169562 TTAAATCGAT
106169572 GGATGAAATCGAAGCATATATACAATTAA
1 GGATGAAATCGAAGCATATATACAATTAA
*
106169601 GGATGAGATCGAAGCATATATACAATTAA
1 GGATGAAATCGAAGCATATATACAATTAA
106169630 G
1 G
106169631 CGATTTACAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.46, C:0.10, G:0.20, T:0.24
Consensus pattern (29 bp):
GGATGAAATCGAAGCATATATACAATTAA
Found at i:106169789 original size:56 final size:57
Alignment explanation
Indices: 106169702--106169850 Score: 246
Period size: 56 Copynumber: 2.6 Consensus size: 57
106169692 ATAATCTTAT
106169702 CAGTTTAATTTCTCATATTTAAGTAGACAACTTCTTCATCAATTCTTAGAATCAAGC
1 CAGTTTAATTTCTCATATTTAAGTAGACAACTTCTTCATCAATTCTTAGAATCAAGC
***
106169759 CAGTTT-ATTTCTCATATTTAAGTAGACAACTTCTTCATCAATTCTTAGAATTGGGC
1 CAGTTTAATTTCTCATATTTAAGTAGACAACTTCTTCATCAATTCTTAGAATCAAGC
* *
106169815 GAGTTTAATTTCTCATATTTAGGTAGACAACTTCTT
1 CAGTTTAATTTCTCATATTTAAGTAGACAACTTCTT
106169851 AGAATTGAAC
Statistics
Matches: 86, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
56 52 0.60
57 34 0.40
ACGTcount: A:0.30, C:0.17, G:0.11, T:0.41
Consensus pattern (57 bp):
CAGTTTAATTTCTCATATTTAAGTAGACAACTTCTTCATCAATTCTTAGAATCAAGC
Found at i:106169853 original size:46 final size:46
Alignment explanation
Indices: 106169800--106169896 Score: 131
Period size: 46 Copynumber: 2.1 Consensus size: 46
106169790 TCTTCATCAA
** * * **
106169800 TTCTTAGAATTGGGCGAGTTTAATTTCTCATATTTAGGTAGACAAC
1 TTCTTAGAATTGAACCAGCTTAATTTCTCATATTTAAATAGACAAC
*
106169846 TTCTTAGAATTGAACCAGCTTAATTTCTCATATTTAAATAGATAAC
1 TTCTTAGAATTGAACCAGCTTAATTTCTCATATTTAAATAGACAAC
106169892 TTCTT
1 TTCTT
106169897 TATTAATTTT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.41
Consensus pattern (46 bp):
TTCTTAGAATTGAACCAGCTTAATTTCTCATATTTAAATAGACAAC
Found at i:106172632 original size:15 final size:15
Alignment explanation
Indices: 106172612--106172642 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
106172602 ACTTGAGGCT
106172612 ATTATATAATGTTAA
1 ATTATATAATGTTAA
*
106172627 ATTATATGATGTTAA
1 ATTATATAATGTTAA
106172642 A
1 A
106172643 AAGGAAAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.10, T:0.45
Consensus pattern (15 bp):
ATTATATAATGTTAA
Found at i:106172734 original size:12 final size:12
Alignment explanation
Indices: 106172717--106172742 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
106172707 GCACAGTGCA
106172717 AATTCCTTGAAT
1 AATTCCTTGAAT
106172729 AATTCCTTGAAT
1 AATTCCTTGAAT
106172741 AA
1 AA
106172743 GATGAGTTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (12 bp):
AATTCCTTGAAT
Found at i:106177280 original size:15 final size:15
Alignment explanation
Indices: 106177260--106177290 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
106177250 ACTTGAGGCT
106177260 ATTATATAATGTTAA
1 ATTATATAATGTTAA
*
106177275 ATTATATGATGTTAA
1 ATTATATAATGTTAA
106177290 A
1 A
106177291 AGGAAAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.10, T:0.45
Consensus pattern (15 bp):
ATTATATAATGTTAA
Found at i:106182388 original size:17 final size:17
Alignment explanation
Indices: 106182366--106182399 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
106182356 ATCCACTAAT
*
106182366 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
106182383 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
106182400 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:106187027 original size:17 final size:17
Alignment explanation
Indices: 106187005--106187038 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
106186995 ATCCACTAAT
*
106187005 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
106187022 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
106187039 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:106192754 original size:59 final size:59
Alignment explanation
Indices: 106192690--106192801 Score: 154
Period size: 59 Copynumber: 1.9 Consensus size: 59
106192680 TTTATTGTCC
* *
106192690 AATTTAGTATCCAAACTTGACACTTTTTTCTTAAATTGGTACTT-ATATTTTTTGGGTCT
1 AATTTAGTACCCAAACTTGACAC-TTTTTCTTAAATTGGCACTTAATATTTTTTGGGTCT
* * * *
106192749 AATTTAGTACCCAAACTTTACTCTTTTTCTTAATTTGGCACTTAATCTTTTTT
1 AATTTAGTACCCAAACTTGACACTTTTTCTTAAATTGGCACTTAATATTTTTT
106192802 TTATCACGAG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
58 18 0.39
59 28 0.61
ACGTcount: A:0.25, C:0.16, G:0.09, T:0.50
Consensus pattern (59 bp):
AATTTAGTACCCAAACTTGACACTTTTTCTTAAATTGGCACTTAATATTTTTTGGGTCT
Found at i:106196692 original size:58 final size:57
Alignment explanation
Indices: 106196607--106196715 Score: 130
Period size: 58 Copynumber: 1.9 Consensus size: 57
106196597 TTTTTTGTCC
* * *
106196607 AATTTAGTATCAAACTTGACACTTTTTTCTTAAAGTGGTACTTATATTTTTTGGGTCT
1 AATTTAGTACCAAACTTGACACTTTTTTCCTAAAGTGGCACTTA-ATTTTTTGGGTCT
* * **
106196665 AATTTAGTACCCAAATTTGACTC-TTTTTCCTAATTTGGCACTTAATTTTTT
1 AATTTAGTA-CCAAACTTGACACTTTTTTCCTAAAGTGGCACTTAATTTTTT
106196716 TTATCACGAG
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
57 7 0.16
58 26 0.60
59 10 0.23
ACGTcount: A:0.26, C:0.15, G:0.11, T:0.49
Consensus pattern (57 bp):
AATTTAGTACCAAACTTGACACTTTTTTCCTAAAGTGGCACTTAATTTTTTGGGTCT
Found at i:106196716 original size:59 final size:57
Alignment explanation
Indices: 106196593--106196717 Score: 126
Period size: 58 Copynumber: 2.2 Consensus size: 57
106196583 TCTTAATTTG
* * * *
106196593 ATTTTTTTTTGTCCAATTTAGTATCAAACTTGACACTTTTTTCTTAAAGTGGTACTT
1 ATTTTTTTTGGTCCAATTTAGTACCAAACTTGACACTTTTTTCCTAAAGTGGCACTT
* * * * **
106196650 ATATTTTTTGGGTCTAATTTAGTACCCAAATTTGACTC-TTTTTCCTAATTTGGCACTT
1 AT-TTTTTTTGGTCCAATTTAGTA-CCAAACTTGACACTTTTTTCCTAAAGTGGCACTT
106196708 AATTTTTTTT
1 -ATTTTTTTT
106196718 ATCACGAGAG
Statistics
Matches: 54, Mismatches: 11, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
57 2 0.04
58 40 0.74
59 12 0.22
ACGTcount: A:0.23, C:0.14, G:0.10, T:0.52
Consensus pattern (57 bp):
ATTTTTTTTGGTCCAATTTAGTACCAAACTTGACACTTTTTTCCTAAAGTGGCACTT
Found at i:106198542 original size:18 final size:18
Alignment explanation
Indices: 106198515--106198607 Score: 150
Period size: 18 Copynumber: 5.2 Consensus size: 18
106198505 TACGACCGTT
106198515 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
106198533 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
106198551 TACAGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
106198569 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
106198587 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
106198605 TAC
1 TAC
106198608 AGTAGTTGGG
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 68 1.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:106206101 original size:33 final size:34
Alignment explanation
Indices: 106206042--106206106 Score: 89
Period size: 33 Copynumber: 1.9 Consensus size: 34
106206032 GCAAATTCCT
*
106206042 TGAATAAGACGAGTTGCATTTATTTCATCATCGC
1 TGAATAAGACGAGTTGCATGTATTTCATCATCGC
*
106206076 TGAA-AAGTCGAGTTGCA-GTAGTTTCATCATC
1 TGAATAAGACGAGTTGCATGTA-TTTCATCATC
106206107 TTCGAAATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 2 0.07
33 22 0.79
34 4 0.14
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (34 bp):
TGAATAAGACGAGTTGCATGTATTTCATCATCGC
Found at i:106213959 original size:32 final size:31
Alignment explanation
Indices: 106213923--106213986 Score: 76
Period size: 34 Copynumber: 2.0 Consensus size: 31
106213913 GATTAGAGAT
106213923 GACTGGA-AGTTGAGTATAGCTTTGATTTTTTG
1 GACTGGACAGTTG-GTATAGCTTTG-TTTTTTG
*
106213955 GACTGGACTGAGTTGGTATAGTTTTGTTTTTT
1 GACTGGAC--AGTTGGTATAGCTTTGTTTTTT
106213987 CGGGACGAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
32 7 0.25
33 6 0.21
34 10 0.36
35 5 0.18
ACGTcount: A:0.19, C:0.06, G:0.28, T:0.47
Consensus pattern (31 bp):
GACTGGACAGTTGGTATAGCTTTGTTTTTTG
Found at i:106221407 original size:5 final size:5
Alignment explanation
Indices: 106221397--106221425 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
106221387 ACTTAGATCT
106221397 ACATG ACATG ACATG ACATG ACATG ACAT
1 ACATG ACATG ACATG ACATG ACATG ACAT
106221426 ACAATACAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.41, C:0.21, G:0.17, T:0.21
Consensus pattern (5 bp):
ACATG
Found at i:106228691 original size:5 final size:5
Alignment explanation
Indices: 106228683--106228707 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
106228673 AGAAAATAGA
106228683 GGAGG GGAGG GGAGG GGAGG GGAGG
1 GGAGG GGAGG GGAGG GGAGG GGAGG
106228708 AAGATGAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.80, T:0.00
Consensus pattern (5 bp):
GGAGG
Found at i:106229211 original size:12 final size:13
Alignment explanation
Indices: 106229186--106229212 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
106229176 AAAAAATCAA
106229186 TTTTGAAAATTTT
1 TTTTGAAAATTTT
106229199 TTTTGAAAATTTT
1 TTTTGAAAATTTT
106229212 T
1 T
106229213 ATGATTCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (13 bp):
TTTTGAAAATTTT
Found at i:106234477 original size:210 final size:210
Alignment explanation
Indices: 106234178--106236005 Score: 2710
Period size: 210 Copynumber: 8.7 Consensus size: 210
106234168 AGTGCAATGG
* * * * * * *
106234178 ATTAAGCAAGATTGGAGAGGGGTTATCTACCTCCATTTGTCTTGAAGAATTAAAGCTAAGTGATT
1 ATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAGGTGGTT
* * *
106234243 GTGCTAAATTAAGTTCCATTCCAGATTTGGAAGAATTTTCCTCTCTCCGAATTTTAGATATATCA
66 GTGCTAATTTAAGTTCCATTCCAGATTTGGTAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
* * * * * * * * *
106234308 AACTGCCGCGAATTGAAAATTGTTCCGATAAGAGGAAGATGTCCATCTCTTAAAAAGATTCTCAT
131 GACTGCCACGAACTGGAAACTATTCCGATAAGAGGAAGATGTTCATCTCTTAAAAAGCTTCACAT
* *
106234373 TTCCTCGTGTCCTAA
196 TTCCTCATGTCCAAA
* * ** *
106234388 ATTAAGCAAGATTGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAGACTTAAAGCTAAATGATT
1 ATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAGGTGGTT
* * * * *
106234453 GTGCTAATTTAAGTTCCATTCCAGATTTGGAAGAATTGTCCTCTCTGCGAATTTTTGATATATCA
66 GTGCTAATTTAAGTTCCATTCCAGATTTGGTAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
* * *
106234518 GACTGCCACGAACTGGAAACTATTTCGATAAGAGGAAGGTGTCCATCTCTTAAAAAGCTTCACAT
131 GACTGCCACGAACTGGAAACTATTCCGATAAGAGGAAGATGTTCATCTCTTAAAAAGCTTCACAT
106234583 TTCCTCATGTCCAAA
196 TTCCTCATGTCCAAA
*
106234598 ATTAAGCAAGATAGGAGACTGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAGGTGGTT
1 ATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAGGTGGTT
* *
106234663 GTGCTAATTTAAGTTCCATTCCAGATTTGGTAGGATTTTTCTCTCTCCGAATTTTAGATGTATCA
66 GTGCTAATTTAAGTTCCATTCCAGATTTGGTAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
* * *
106234728 GACTGCCACGAACTGGAAACTTTTCTGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACAT
131 GACTGCCACGAACTGGAAACTATTCCGATAAGAGGAAGATGTTCATCTCTTAAAAAGCTTCACAT
106234793 TTCCTCATGTCCAAA
196 TTCCTCATGTCCAAA
* *
106234808 ATTAAGCAAGATAGGAGACTGGTTGTCTACCTCCACCAGTCTTGAAGAATTAAAGCTAGGTGGTT
1 ATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAGGTGGTT
* * **
106234873 GTGTTAATTTAAGTTCCATTCCAGATTTGGTTGGATTTTCCTCTCTCCGAATTTTTCATATATCA
66 GTGCTAATTTAAGTTCCATTCCAGATTTGGTAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
* * * *
106234938 GACTGCCACGAACTGAAAATTATTCCGGTAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACAT
131 GACTGCCACGAACTGGAAACTATTCCGATAAGAGGAAGATGTTCATCTCTTAAAAAGCTTCACAT
106235003 TTCCTCATGTCCAAA
196 TTCCTCATGTCCAAA
* *
106235018 ATTAAGCAGGATAGGAGACTGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAGGTGGTT
1 ATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAGGTGGTT
106235083 GTGCTAATTTAAGTTCCATTCCAGATTTGGTAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
66 GTGCTAATTTAAGTTCCATTCCAGATTTGGTAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
* * * *
106235148 GAGTGCCACAAACTGGAAACTATTCCGATAAAAGGAAGATGTTCATCTCTTAGAAAGCTTCACAT
131 GACTGCCACGAACTGGAAACTATTCCGATAAGAGGAAGATGTTCATCTCTTAAAAAGCTTCACAT
106235213 TTCCTCATGTCCAAA
196 TTCCTCATGTCCAAA
* * * *
106235228 ATTAAGCGAGATAGGAGACTGGTTGTCTACCTCCACTAGTCTT-AAAAATTAAAGCTGGGTGGTT
1 ATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAGGTGGTT
* *
106235292 GTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGAATTTCCTCTCTCCGAATTTTAGATATATCA
66 GTGCTAATTTAAGTTCCATTCCAGATTTGGTAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
* * * * * *
106235357 AACTTCCACAAATTGGAAACTATTCCGATAAGAGGAAGACGTTCATCTCTTGAAAAGCTTCACAT
131 GACTGCCACGAACTGGAAACTATTCCGATAAGAGGAAGATGTTCATCTCTTAAAAAGCTTCACAT
106235422 TTCCTCATGTCCAAA
196 TTCCTCATGTCCAAA
* * * *
106235437 ATTAAGCAAGATAGGAGACGGGCTGTCTACCTCCACTAATCTTGCAGAATTAAAGCAAGGTGGTT
1 ATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAGGTGGTT
*
106235502 GTGCTAATTTAAGTTCCATTCCAGATTTGGTGGGATTTTCCTCTCTCCGAATTTTAGATATATCA
66 GTGCTAATTTAAGTTCCATTCCAGATTTGGTAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
*
106235567 GACTGCCACGAACTGGAAACTATTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACAT
131 GACTGCCACGAACTGGAAACTATTCCGATAAGAGGAAGATGTTCATCTCTTAAAAAGCTTCACAT
106235632 TTCCTCATGTCCAAA
196 TTCCTCATGTCCAAA
* * * *
106235647 ATTAAGCGAGATAGGAGACGGGCTGTCTACCTCCACTAATCTTGCAGAATTAAAGCTAGGTGGTT
1 ATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAGGTGGTT
106235712 GTGCTAATTTAAGTTCCATTCCAGATTTGGTAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
66 GTGCTAATTTAAGTTCCATTCCAGATTTGGTAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
* *
106235777 GACTGCCACAAACTGGAAACTATTCCGATAAGAGGAAGATGTTCATCTCTTAAAAAGCTTCAGAT
131 GACTGCCACGAACTGGAAACTATTCCGATAAGAGGAAGATGTTCATCTCTTAAAAAGCTTCACAT
106235842 TTCCTCATGTCCAAA
196 TTCCTCATGTCCAAA
* * * * * *****
106235857 ATTAAGCGAGATAGGAGACAGGTTGTCTACCTCCCCTAATCTTGCAGAATTAAAGCTATCCCATT
1 ATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAGGTGGTT
* * * * * * *
106235922 GTGGTAACTTAAATTCCATTCCAGATTTAGAAGGATTTTGCC-CTCTTC-ATATTTTAAATATAT
66 GTGCTAATTTAAGTTCCATTCCAGATTTGGTAGGATTTT-CCTCTCTCCGA-ATTTTAGATATAT
* *
106235985 CAAACTGCAAC-AATCTGGAAA
129 CAGACTGCCACGAA-CTGGAAA
106236006 TTGTTCGAAT
Statistics
Matches: 1494, Mismatches: 120, Indels: 8
0.92 0.07 0.00
Matches are distributed among these distances:
209 196 0.13
210 1296 0.87
211 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.32
Consensus pattern (210 bp):
ATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAGGTGGTT
GTGCTAATTTAAGTTCCATTCCAGATTTGGTAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
GACTGCCACGAACTGGAAACTATTCCGATAAGAGGAAGATGTTCATCTCTTAAAAAGCTTCACAT
TTCCTCATGTCCAAA
Found at i:106235551 original size:839 final size:840
Alignment explanation
Indices: 106234178--106236005 Score: 2784
Period size: 839 Copynumber: 2.2 Consensus size: 840
106234168 AGTGCAATGG
* * ** * * *
106234178 ATTAAGCAAGATTGGAGAGGGGTTATCTACCTCCATTTGTCTTGAAGAATTAAAGCTAAGTGATT
1 ATTAAGCAGGATAGGAGACAGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGATT
*
106234243 GTGCTAAATTAAGTTCCATTCCAGATTTGGAAGAATTTTCCTCTCTCCGAATTTTAGATATATCA
66 GTGCTAAATTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
* * * * * * * *
106234308 AACTGCCGCGAATTGAAAATTGTTCCGATAAGAGGAAGATGTCCATCTCTTAAAAAGATTCTCAT
131 AACTGCCACAAACTGGAAACTATTCCGATAAAAGGAAGATGTCCATCTCTTAAAAAGATTCACAT
* * * * *
106234373 TTCCTCGTGTCCTAAATTAAGCAAGATTGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAGACT
196 TTCCTCATGTCCAAAATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAAAAT
*
106234438 TAAAGCTAAATGATTGTGCTAATTTAAGTTCCATTCCAGATTTGGAAGAATTGTCCTCTCTGCGA
261 TAAAGCTAAATGATTGTGCTAATTTAAGTTCCATTCCAGATTTGGAAGAATTGTCCTCTCTCCGA
* * * * **
106234503 ATTTTTGATATATCAGACTGCCACGAACTGGAAACTATTTCGATAAGAGGAAGGTGTCCATCTCT
326 ATTTTAGATATATCAAACTGCCACAAACTGGAAACTATTCCGATAAGAGGAAGACGTCCATCTCT
* *
106234568 TAAAAAGCTTCACATTTCCTCATGTCCAAAATTAAGCAAGATAGGAGACTGGTTGTCTACCTCCA
391 TAAAAAGCTTCACATTTCCTCATGTCCAAAATTAAGCAAGATAGGAGACGGGCTGTCTACCTCCA
* *
106234633 CTAGTCTTGAAGAATTAAAGCTAGGTGGTTGTGCTAATTTAAGTTCCATTCCAGATTTGGTAGGA
456 CTAATCTTGAAGAATTAAAGCAAGGTGGTTGTGCTAATTTAAGTTCCATTCCAGATTTGGTAGGA
* * * *
106234698 TTTTTCTCTCTCCGAATTTTAGATGTATCAGACTGCCACGAACTGGAAACTTTTCTGATAAGAGG
521 TTTTCCTCTCTCCGAATTTTAGATATATCAGACTGCCACGAACTGGAAACTATTCCGATAAGAGG
*
106234763 AAGATGTTCATCTCTTGAAAAGCTTCACATTTCCTCATGTCCAAAATTAAGCAAGATAGGAGACT
586 AAGATGTTCATCTCTTGAAAAGCTTCACATTTCCTCATGTCCAAAATTAAGCAAGATAGGAGACG
* * *
106234828 GGTTGTCTACCTCCACCAGTCTTGAAGAATTAAAGCTAGGTGGTTGTGTTAATTTAAGTTCCATT
651 GGCTGTCTACCTCCACCAATCTTGAAGAATTAAAGCTAGGTGGTTGTGCTAATTTAAGTTCCATT
* * * *
106234893 CCAGATTTGGTTGGATTTTCCTCTCTCCGAATTTTTCATATATCAGACTGCCACGAACTGAAAAT
716 CCAGATTTGGTAGGATTTTCCTCTCTCCGAATTTTACATATATCAGACTGCCACAAACTGAAAAC
* *
106234958 TATTCCGGTAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACATTTCCTCATGTCCAAA
781 TATTCCGATAAGAGGAAGATGTTCATCTCTTAAAAAGCTTCACATTTCCTCATGTCCAAA
* * *
106235018 ATTAAGCAGGATAGGAGACTGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAGGTGGTT
1 ATTAAGCAGGATAGGAGACAGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGATT
* *
106235083 GTGCTAATTTAAGTTCCATTCCAGATTTGGTAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
66 GTGCTAAATTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
* * * * *
106235148 GAGTGCCACAAACTGGAAACTATTCCGATAAAAGGAAGATGTTCATCTCTTAGAAAGCTTCACAT
131 AACTGCCACAAACTGGAAACTATTCCGATAAAAGGAAGATGTCCATCTCTTAAAAAGATTCACAT
* *
106235213 TTCCTCATGTCCAAAATTAAGCGAGATAGGAGACTGGTTGTCTACCTCCACTAGTCTT-AAAAAT
196 TTCCTCATGTCCAAAATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAAAAT
*** *
106235277 TAAAGCTGGGTGGTTGTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGAATT-TCCTCTCTCCG
261 TAAAGCTAAATGATTGTGCTAATTTAAGTTCCATTCCAGATTTGGAA-GAATTGTCCTCTCTCCG
* * *
106235341 AATTTTAGATATATCAAACTTCCACAAATTGGAAACTATTCCGATAAGAGGAAGACGTTCATCTC
325 AATTTTAGATATATCAAACTGCCACAAACTGGAAACTATTCCGATAAGAGGAAGACGTCCATCTC
*
106235406 TTGAAAAGCTTCACATTTCCTCATGTCCAAAATTAAGCAAGATAGGAGACGGGCTGTCTACCTCC
390 TTAAAAAGCTTCACATTTCCTCATGTCCAAAATTAAGCAAGATAGGAGACGGGCTGTCTACCTCC
* *
106235471 ACTAATCTTGCAGAATTAAAGCAAGGTGGTTGTGCTAATTTAAGTTCCATTCCAGATTTGGTGGG
455 ACTAATCTTGAAGAATTAAAGCAAGGTGGTTGTGCTAATTTAAGTTCCATTCCAGATTTGGTAGG
106235536 ATTTTCCTCTCTCCGAATTTTAGATATATCAGACTGCCACGAACTGGAAACTATTCCGATAAGAG
520 ATTTTCCTCTCTCCGAATTTTAGATATATCAGACTGCCACGAACTGGAAACTATTCCGATAAGAG
*
106235601 GAAGATGTTCATCTCTTGAAAAGCTTCACATTTCCTCATGTCCAAAATTAAGCGAGATAGGAGAC
585 GAAGATGTTCATCTCTTGAAAAGCTTCACATTTCCTCATGTCCAAAATTAAGCAAGATAGGAGAC
* *
106235666 GGGCTGTCTACCTCCACTAATCTTGCAGAATTAAAGCTAGGTGGTTGTGCTAATTTAAGTTCCAT
650 GGGCTGTCTACCTCCACCAATCTTGAAGAATTAAAGCTAGGTGGTTGTGCTAATTTAAGTTCCAT
* *
106235731 TCCAGATTTGGTAGGATTTTCCTCTCTCCGAATTTTAGATATATCAGACTGCCACAAACTGGAAA
715 TCCAGATTTGGTAGGATTTTCCTCTCTCCGAATTTTACATATATCAGACTGCCACAAACTGAAAA
*
106235796 CTATTCCGATAAGAGGAAGATGTTCATCTCTTAAAAAGCTTCAGATTTCCTCATGTCCAAA
780 CTATTCCGATAAGAGGAAGATGTTCATCTCTTAAAAAGCTTCACATTTCCTCATGTCCAAA
* * * ****
106235857 ATTAAGC-GAGATAGGAGACAGGTTGTCTACCTCCCCTAATCTTGCAGAATTAAAGCTATCCCAT
1 ATTAAGCAG-GATAGGAGACAGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGAT
* * * * * *
106235921 TGTGGTAACTTAAATTCCATTCCAGATTTAGAAGGATTTTGCC-CTCTTC-ATATTTTAAATATA
65 TGTGCTAAATTAAGTTCCATTCCAGATTTGGAAGGATTTT-CCTCTCTCCGA-ATTTTAGATATA
* *
106235984 TCAAACTGCAACAATCTGGAAA
128 TCAAACTGCCACAAACTGGAAA
106236006 TTGTTCGAAT
Statistics
Matches: 891, Mismatches: 93, Indels: 9
0.90 0.09 0.01
Matches are distributed among these distances:
838 2 0.00
839 659 0.74
840 230 0.26
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.32
Consensus pattern (840 bp):
ATTAAGCAGGATAGGAGACAGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGATT
GTGCTAAATTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
AACTGCCACAAACTGGAAACTATTCCGATAAAAGGAAGATGTCCATCTCTTAAAAAGATTCACAT
TTCCTCATGTCCAAAATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAAAAT
TAAAGCTAAATGATTGTGCTAATTTAAGTTCCATTCCAGATTTGGAAGAATTGTCCTCTCTCCGA
ATTTTAGATATATCAAACTGCCACAAACTGGAAACTATTCCGATAAGAGGAAGACGTCCATCTCT
TAAAAAGCTTCACATTTCCTCATGTCCAAAATTAAGCAAGATAGGAGACGGGCTGTCTACCTCCA
CTAATCTTGAAGAATTAAAGCAAGGTGGTTGTGCTAATTTAAGTTCCATTCCAGATTTGGTAGGA
TTTTCCTCTCTCCGAATTTTAGATATATCAGACTGCCACGAACTGGAAACTATTCCGATAAGAGG
AAGATGTTCATCTCTTGAAAAGCTTCACATTTCCTCATGTCCAAAATTAAGCAAGATAGGAGACG
GGCTGTCTACCTCCACCAATCTTGAAGAATTAAAGCTAGGTGGTTGTGCTAATTTAAGTTCCATT
CCAGATTTGGTAGGATTTTCCTCTCTCCGAATTTTACATATATCAGACTGCCACAAACTGAAAAC
TATTCCGATAAGAGGAAGATGTTCATCTCTTAAAAAGCTTCACATTTCCTCATGTCCAAA
Found at i:106238476 original size:19 final size:19
Alignment explanation
Indices: 106238452--106238489 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
106238442 AAATATCTAT
106238452 AAAAAATTACAAAAATATAA
1 AAAAAATTA-AAAAATATAA
*
106238472 AAAAAATTAAAAATTATA
1 AAAAAATTAAAAAATATA
106238490 TAACAATGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (19 bp):
AAAAAATTAAAAAATATAA
Found at i:106238805 original size:35 final size:31
Alignment explanation
Indices: 106238735--106238806 Score: 74
Period size: 35 Copynumber: 2.2 Consensus size: 31
106238725 TTAGTTTTAT
* *
106238735 AATATTTTAAATATTTTTTAATTTGTTTCAT
1 AATATTTTAAATATTTTTTAATTTGTTTAAA
106238766 AATATTTTAAATTATGATTTTTAAATTAT-TTTAAA
1 AATATTTTAAA-TAT--TTTTT-AATT-TGTTTAAA
106238801 AATATT
1 AATATT
106238807 CAAACCTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
31 11 0.32
32 3 0.09
34 5 0.15
35 14 0.41
36 1 0.03
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.57
Consensus pattern (31 bp):
AATATTTTAAATATTTTTTAATTTGTTTAAA
Found at i:106243685 original size:18 final size:18
Alignment explanation
Indices: 106243627--106243719 Score: 77
Period size: 18 Copynumber: 5.1 Consensus size: 18
106243617 TTACATTATT
106243627 TTTTAAATATTAAATATA
1 TTTTAAATATTAAATATA
*
106243645 TTATT-AAT-TTAATATTATT
1 TT-TTAAATATTAA-A-TATA
106243664 TTTTAAATATTAAATATA
1 TTTTAAATATTAAATATA
* *
106243682 TTTTGAATAATATAAA-ACA
1 TTTTAAAT-AT-TAAATATA
106243701 -TTTAAATATTTAAATATA
1 TTTTAAATA-TTAAATATA
106243719 T
1 T
106243720 GACAGCACTT
Statistics
Matches: 59, Mismatches: 6, Indels: 19
0.70 0.07 0.23
Matches are distributed among these distances:
17 9 0.15
18 27 0.46
19 15 0.25
20 8 0.14
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (18 bp):
TTTTAAATATTAAATATA
Found at i:106261145 original size:210 final size:210
Alignment explanation
Indices: 106260814--106262419 Score: 2207
Period size: 210 Copynumber: 7.6 Consensus size: 210
106260804 AGTGCAATGG
* * * * * *
106260814 ATTAAGCAAGATTGGAGAGGGGTTATCTACCTCCATTTGTCTTGAAGAATTAAAGCTAAGTGATT
1 ATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGGTT
* * * * *
106260879 GTGCCAAATTAAGTTTCATTCCAGATTTGGAAGAATTTTCCTCTCTCCGTATTTTAGATATATCA
66 GTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
* * * * * * *
106260944 GATTGCCACAAACTAGAAACTATTACGATAAGAGGAAGATGTCCATCTCTTGAAAAGCTTCACAT
131 GACTGCCACGAACTTGAAACTGTTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACGT
*
106261009 TTCCTCATGTCCAAA
196 TTCCTCGTGTCCAAA
* * * *
106261024 ATTAAGCAAGATCGGAGACTGGCTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAGGTGGTT
1 ATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGGTT
* * *
106261089 GTGCTAATTTAAGTTCCATTCCAGATTTGGTAGGATTTTTCTCTCTCCGAATTTTAGATATATTA
66 GTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
* * * * *
106261154 GATTGCCACGAACTTGAAACTGTTCCGATAAGAGGAAGATATACATCTCTTAAAAAGCTTCATGT
131 GACTGCCACGAACTTGAAACTGTTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACGT
*
106261219 TTCCTTGTGTCCAAA
196 TTCCTCGTGTCCAAA
*
106261234 ATTAAGCAAGATTGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGGTT
1 ATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGGTT
* * *
106261299 GTTCTAATTTAAGTTTCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATTA
66 GTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
* *
106261364 GACTGCCACGAGCTGGAAACTGTTCCGAT-AGAAGGAAGATGTTCATCTCTTGAAAAGCTTCACG
131 GACTGCCACGAACTTGAAACTGTTCCGATAAG-AGGAAGATGTTCATCTCTTGAAAAGCTTCACG
106261428 TTTCCTCGTGTCCAAA
195 TTTCCTCGTGTCCAAA
* *
106261444 ATTAAGCAAGATAGGAGACGGGTTATCTACCTCCACTATTCTTGAAGAATTAAAGCTAAGTGGTT
1 ATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGGTT
* * *
106261509 GTTCTAATTTAAATTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCAAATTTTAGATATATCA
66 GTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
106261574 GACTGCCACGAA-TTGAAAACTGTTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACG
131 GACTGCCACGAACTTG-AAACTGTTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACG
106261638 TTTCCTCGTGTCCAAA
195 TTTCCTCGTGTCCAAA
* * *
106261654 ATTAAGCAAGATAGGAGACGGGCTGTCTACCTCCACTATTCTTGAAGAATTAAAGTTAAGTGGTT
1 ATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGGTT
* * *
106261719 GTGCTAATTTAAGTTTCATTCCAGATTTGGAAGAAATTTCCTCTCTCCGAATTTTAGATATATCA
66 GTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
* *
106261784 GACTGCCACGAA-TTGAAAATTGTTCCGATTAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACG
131 GACTGCCACGAACTTG-AAACTGTTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACG
*
106261848 TTTCCTCGTGTTCAAA
195 TTTCCTCGTGTCCAAA
*
106261864 ATTAAGCAAGATAGGAGATGGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGGTT
1 ATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGGTT
* * * *
106261929 GTTCTAATTTAAGTTCCATTCCAGATTTGGTAGGATTTTCCTCTCTCCAAATTTTAAATATATCA
66 GTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
* * * * * *
106261994 GACTGCCACGAACTGGAAACTATTCCGGTAAGAGGAATATGTTCATCTCTTGAAAAGCTTTACAT
131 GACTGCCACGAACTTGAAACTGTTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACGT
*
106262059 TTTCTCGTGTCCAAA
196 TTCCTCGTGTCCAAA
* * * *
106262074 ATTAAGCAAGATAGGAGACTGGTTGTCTACCTCCACTAGTCTTGAAAAAGTAAAGCTAATTGGTT
1 ATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGGTT
*
106262139 GTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTACGAATTTTAGATATATCA
66 GTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
* * * ** * * * *
106262204 AACTGTCATGAAC-TGAAAACTGTTTTGATAAGAGGAAGATGTCCATCTCTTGAGAAGCTTCTCA
131 GACTGCCACGAACTTG-AAACTGTTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACG
* *
106262268 TTTCCTGGTGTCCTAA
195 TTTCCTCGTGTCCAAA
* ** * * * * * *****
106262284 ATTAAGCAAGATAGGAGATGGGTTGTCTACAGCCACTTG-CCTCAAAAAGTTAAAACTACCCCAT
1 ATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAGAA-TTAAAGCTAAGTGGT
* * * * * * *
106262348 TGTGGTAACTTAAATTCCATTCCAGATTTAGTAGGATTTTCCTCTCTTC-ATATTTTAAATATAT
65 TGTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGA-ATTTTAGATATAT
*
106262412 CAAACTGC
129 CAGACTGC
106262420 AACAATCTGG
Statistics
Matches: 1255, Mismatches: 134, Indels: 14
0.89 0.10 0.01
Matches are distributed among these distances:
209 13 0.01
210 1238 0.99
211 4 0.00
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (210 bp):
ATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGGTT
GTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
GACTGCCACGAACTTGAAACTGTTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACGT
TTCCTCGTGTCCAAA
Found at i:106268588 original size:41 final size:41
Alignment explanation
Indices: 106268521--106268676 Score: 188
Period size: 41 Copynumber: 3.8 Consensus size: 41
106268511 AGACCATTCG
* * * *
106268521 GGGCTTTAGCGGCGTTTTTTGGAAAAGCGCCGCTAATTCTTT
1 GGGCTTTAGCGGC-ATTTTTGTAAAAGCGCCGCTAATGCTCT
* *
106268563 GGGATTTAGCAGCATTTTTGTAAAAGCGCCGCTAATGCTCT
1 GGGCTTTAGCGGCATTTTTGTAAAAGCGCCGCTAATGCTCT
* *
106268604 GGGCTTTAGTGGCGTTTTTTGT-AAAGCGCCGCTAATGCTCT
1 GGGCTTTAGCGGC-ATTTTTGTAAAAGCGCCGCTAATGCTCT
* **
106268645 GGGCTTTAGCGGCGTTTTTAAAAAAGCGCCGC
1 GGGCTTTAGCGGCATTTTTGTAAAAGCGCCGC
106268677 AAAAACATTT
Statistics
Matches: 98, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
40 5 0.05
41 75 0.77
42 18 0.18
ACGTcount: A:0.19, C:0.20, G:0.28, T:0.33
Consensus pattern (41 bp):
GGGCTTTAGCGGCATTTTTGTAAAAGCGCCGCTAATGCTCT
Found at i:106268663 original size:82 final size:83
Alignment explanation
Indices: 106268521--106268676 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 83
106268511 AGACCATTCG
* * **
106268521 GGGCTTTAGCGGCGTTTTTTGGAAAAGCGCCGCTAATTCTTTGGGATTTAGCAGCATTTTTGTAA
1 GGGCTTTAGCGGCGTTTTTTGGAAAAGCGCCGCTAATGCTCTGGGATTTAGCAGCATTTTTAAAA
106268586 AAGCGCCGCTAATGCTCT
66 AAGCGCCGCTAATGCTCT
* * * * *
106268604 GGGCTTTAGTGGCGTTTTTT-GTAAAGCGCCGCTAATGCTCTGGGCTTTAGCGGCGTTTTTAAAA
1 GGGCTTTAGCGGCGTTTTTTGGAAAAGCGCCGCTAATGCTCTGGGATTTAGCAGCATTTTTAAAA
106268668 AAGCGCCGC
66 AAGCGCCGC
106268677 AAAAACATTT
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
82 45 0.70
83 19 0.30
ACGTcount: A:0.19, C:0.20, G:0.28, T:0.33
Consensus pattern (83 bp):
GGGCTTTAGCGGCGTTTTTTGGAAAAGCGCCGCTAATGCTCTGGGATTTAGCAGCATTTTTAAAA
AAGCGCCGCTAATGCTCT
Found at i:106269015 original size:14 final size:14
Alignment explanation
Indices: 106269004--106269041 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
106268994 AGGGTTTAAT
106269004 ATATATGGTTTAGG
1 ATATATGGTTTAGG
*
106269018 GTATATGGTTTAGG
1 ATATATGGTTTAGG
106269032 ATATATGGTT
1 ATATATGGTT
106269042 AATTTAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.26, C:0.00, G:0.29, T:0.45
Consensus pattern (14 bp):
ATATATGGTTTAGG
Found at i:106269166 original size:14 final size:14
Alignment explanation
Indices: 106269128--106269192 Score: 69
Period size: 14 Copynumber: 4.6 Consensus size: 14
106269118 GGGTTTTGGT
*
106269128 TTAAGGGTT-GTGA
1 TTAAGGGTTAGGGA
*
106269141 TTTAGGGGTTAGGGA
1 -TTAAGGGTTAGGGA
*
106269156 TTAAGGGTTAGAGA
1 TTAAGGGTTAGGGA
*
106269170 TTAAGAGTTAGGGA
1 TTAAGGGTTAGGGA
*
106269184 TTTAGGGTT
1 TTAAGGGTT
106269193 TATGGATTCG
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
14 39 0.93
15 3 0.07
ACGTcount: A:0.26, C:0.00, G:0.38, T:0.35
Consensus pattern (14 bp):
TTAAGGGTTAGGGA
Found at i:106269404 original size:14 final size:14
Alignment explanation
Indices: 106269367--106269406 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
106269357 AGGGTTAAAT
106269367 GTTTGTGGTTAGGG
1 GTTTGTGGTTAGGG
* *
106269381 GTTAGAGGTTAGGG
1 GTTTGTGGTTAGGG
106269395 GTTTGTGGTTAG
1 GTTTGTGGTTAG
106269407 TGATTTAGGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.12, C:0.00, G:0.47, T:0.40
Consensus pattern (14 bp):
GTTTGTGGTTAGGG
Found at i:106273521 original size:632 final size:632
Alignment explanation
Indices: 106272316--106273579 Score: 2528
Period size: 632 Copynumber: 2.0 Consensus size: 632
106272306 AGATCCAGAA
106272316 CGCGGAATCCTGGTTTGGCACTTCACTGTGACGTTTTTACTAATACCACTAAGATTGAAATTGTT
1 CGCGGAATCCTGGTTTGGCACTTCACTGTGACGTTTTTACTAATACCACTAAGATTGAAATTGTT
106272381 GGTGTAAAGTATGAGGTGCTGGACATCCATCATGAAAATCAAATTCTAAGGATTGCGAGGGAGGA
66 GGTGTAAAGTATGAGGTGCTGGACATCCATCATGAAAATCAAATTCTAAGGATTGCGAGGGAGGA
106272446 CTTCATCAAGAATGGCTCTTGTCATCCTCAAATTCCAATTCAAGATTCGATCCTGAATTCTGAGC
131 CTTCATCAAGAATGGCTCTTGTCATCCTCAAATTCCAATTCAAGATTCGATCCTGAATTCTGAGC
106272511 CATTCGTTCTCGGTTCTGGAAATACCAATCTTACTCTGTCTTATGACTGCCAATCTTCATCGAGT
196 CATTCGTTCTCGGTTCTGGAAATACCAATCTTACTCTGTCTTATGACTGCCAATCTTCATCGAGT
106272576 TTTGGAATCTTCCCTTGCAATTCTTCAAATTACAACAATGTTTCCATAACTACAGATAACATTCG
261 TTTGGAATCTTCCCTTGCAATTCTTCAAATTACAACAATGTTTCCATAACTACAGATAACATTCG
106272641 TCCAGATGGATGTTCAGCTAATGTTAGAGTCCCGATTCTTCAATCTTCCTGGGAAAGACTTCGAA
326 TCCAGATGGATGTTCAGCTAATGTTAGAGTCCCGATTCTTCAATCTTCCTGGGAAAGACTTCGAA
106272706 ATGATTCCCTGGATTTGGAAGAAGCATTGGAAACAGGATTTGAGGTGCAATGGAAGGAAGATACG
391 ATGATTCCCTGGATTTGGAAGAAGCATTGGAAACAGGATTTGAGGTGCAATGGAAGGAAGATACG
106272771 GAAGCCTGCCGGAAGTGCAATGCTTCTGGTGGAGCCTGCGGTTTTGACAAGTCCAACAATCAAAC
456 GAAGCCTGCCGGAAGTGCAATGCTTCTGGTGGAGCCTGCGGTTTTGACAAGTCCAACAATCAAAC
106272836 ATTCTGCTACTGCCCATCAGGATTTGAGAGTTCCCCGGATTCCAACGAATGCCATCTAGCCCTTC
521 ATTCTGCTACTGCCCATCAGGATTTGAGAGTTCCCCGGATTCCAACGAATGCCATCTAGCCCTTC
106272901 TCCCACCATCCCCAACAAATACTGGAAGCAATAATACCAGAGGTATG
586 TCCCACCATCCCCAACAAATACTGGAAGCAATAATACCAGAGGTATG
106272948 CGCGGAATCCTGGTTTGGCACTTCACTGTGACGTTTTTACTAATACCACTAAGATTGAAATTGTT
1 CGCGGAATCCTGGTTTGGCACTTCACTGTGACGTTTTTACTAATACCACTAAGATTGAAATTGTT
106273013 GGTGTAAAGTATGAGGTGCTGGACATCCATCATGAAAATCAAATTCTAAGGATTGCGAGGGAGGA
66 GGTGTAAAGTATGAGGTGCTGGACATCCATCATGAAAATCAAATTCTAAGGATTGCGAGGGAGGA
106273078 CTTCATCAAGAATGGCTCTTGTCATCCTCAAATTCCAATTCAAGATTCGATCCTGAATTCTGAGC
131 CTTCATCAAGAATGGCTCTTGTCATCCTCAAATTCCAATTCAAGATTCGATCCTGAATTCTGAGC
106273143 CATTCGTTCTCGGTTCTGGAAATACCAATCTTACTCTGTCTTATGACTGCCAATCTTCATCGAGT
196 CATTCGTTCTCGGTTCTGGAAATACCAATCTTACTCTGTCTTATGACTGCCAATCTTCATCGAGT
106273208 TTTGGAATCTTCCCTTGCAATTCTTCAAATTACAACAATGTTTCCATAACTACAGATAACATTCG
261 TTTGGAATCTTCCCTTGCAATTCTTCAAATTACAACAATGTTTCCATAACTACAGATAACATTCG
106273273 TCCAGATGGATGTTCAGCTAATGTTAGAGTCCCGATTCTTCAATCTTCCTGGGAAAGACTTCGAA
326 TCCAGATGGATGTTCAGCTAATGTTAGAGTCCCGATTCTTCAATCTTCCTGGGAAAGACTTCGAA
106273338 ATGATTCCCTGGATTTGGAAGAAGCATTGGAAACAGGATTTGAGGTGCAATGGAAGGAAGATACG
391 ATGATTCCCTGGATTTGGAAGAAGCATTGGAAACAGGATTTGAGGTGCAATGGAAGGAAGATACG
106273403 GAAGCCTGCCGGAAGTGCAATGCTTCTGGTGGAGCCTGCGGTTTTGACAAGTCCAACAATCAAAC
456 GAAGCCTGCCGGAAGTGCAATGCTTCTGGTGGAGCCTGCGGTTTTGACAAGTCCAACAATCAAAC
106273468 ATTCTGCTACTGCCCATCAGGATTTGAGAGTTCCCCGGATTCCAACGAATGCCATCTAGCCCTTC
521 ATTCTGCTACTGCCCATCAGGATTTGAGAGTTCCCCGGATTCCAACGAATGCCATCTAGCCCTTC
106273533 TCCCACCATCCCCAACAAATACTGGAAGCAATAATACCAGAGGTATG
586 TCCCACCATCCCCAACAAATACTGGAAGCAATAATACCAGAGGTATG
106273580 TATGTACTTT
Statistics
Matches: 632, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
632 632 1.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (632 bp):
CGCGGAATCCTGGTTTGGCACTTCACTGTGACGTTTTTACTAATACCACTAAGATTGAAATTGTT
GGTGTAAAGTATGAGGTGCTGGACATCCATCATGAAAATCAAATTCTAAGGATTGCGAGGGAGGA
CTTCATCAAGAATGGCTCTTGTCATCCTCAAATTCCAATTCAAGATTCGATCCTGAATTCTGAGC
CATTCGTTCTCGGTTCTGGAAATACCAATCTTACTCTGTCTTATGACTGCCAATCTTCATCGAGT
TTTGGAATCTTCCCTTGCAATTCTTCAAATTACAACAATGTTTCCATAACTACAGATAACATTCG
TCCAGATGGATGTTCAGCTAATGTTAGAGTCCCGATTCTTCAATCTTCCTGGGAAAGACTTCGAA
ATGATTCCCTGGATTTGGAAGAAGCATTGGAAACAGGATTTGAGGTGCAATGGAAGGAAGATACG
GAAGCCTGCCGGAAGTGCAATGCTTCTGGTGGAGCCTGCGGTTTTGACAAGTCCAACAATCAAAC
ATTCTGCTACTGCCCATCAGGATTTGAGAGTTCCCCGGATTCCAACGAATGCCATCTAGCCCTTC
TCCCACCATCCCCAACAAATACTGGAAGCAATAATACCAGAGGTATG
Found at i:106274085 original size:20 final size:22
Alignment explanation
Indices: 106274050--106274093 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
106274040 TATAGGAAGC
106274050 TTAAATTTTTATTTTGTA-GCA
1 TTAAATTTTTATTTTGTATGCA
*
106274071 TTAAGTTTTTA-TTTGTATGCA
1 TTAAATTTTTATTTTGTATGCA
106274092 TT
1 TT
106274094 GGTGTATGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.25, C:0.05, G:0.11, T:0.59
Consensus pattern (22 bp):
TTAAATTTTTATTTTGTATGCA
Found at i:106274550 original size:43 final size:43
Alignment explanation
Indices: 106274473--106274609 Score: 112
Period size: 43 Copynumber: 3.2 Consensus size: 43
106274463 TTTTCGCTAG
* * ** * * *
106274473 AAGCGCCGCTAAAATTTATGGTCTGTAGCAGCGTTTGTGATAA
1 AAGCGCCGCAAAAAGTCGTGGTCTTTAGCAGCGTTCGTGAGAA
* * * * * * *
106274516 AAGCGCTGCTAAAGGTCTTGGTTTTTAGCGGCGTTCGTGGGAA
1 AAGCGCCGCAAAAAGTCGTGGTCTTTAGCAGCGTTCGTGAGAA
* ** *
106274559 AAGCGCCGCAAAAAGTCGTGGTCTTTAGCAACGTTTATGGGAA
1 AAGCGCCGCAAAAAGTCGTGGTCTTTAGCAGCGTTCGTGAGAA
106274602 AAGCGCCG
1 AAGCGCCG
106274610 TTATTGTTAA
Statistics
Matches: 74, Mismatches: 20, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
43 74 1.00
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (43 bp):
AAGCGCCGCAAAAAGTCGTGGTCTTTAGCAGCGTTCGTGAGAA
Found at i:106277893 original size:210 final size:210
Alignment explanation
Indices: 106277525--106279162 Score: 2189
Period size: 210 Copynumber: 7.8 Consensus size: 210
106277515 AGTGCAATGG
* * * * * *
106277525 ATTAAGCAAGATTGGAGAGGGGTTGTCTACCTCCATTTGTCTTGCAGAATTAAAGCTAAGTGATT
1 ATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGGTT
* * * *
106277590 GTGCCAAATTAAGTTTCATTCCAGATTTGGAAGAATTTTCCTCTCTCCGAATTTTAGATATATCA
66 GTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
* * * *
106277655 GACTGCCATGAACTGGAAACTATTCCGATAAGAGGAAGATGTCCATCTCTTGAAAAGCTTCACAT
131 GACTGCCACGAACTGGAAACTGTTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACGT
*
106277720 TTCCTCATGTCCAAA
196 TTCCTCGTGTCCAAA
* * * * *
106277735 ATTATGCAAGATCGGAGACTGGCTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAGGTGGTT
1 ATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGGTT
* ** *
106277800 GTGCTAATTTAAGTTCCATTCCAGATTTGGTAGGATTTTATTCTCTCCGAATTTTAGATATATTA
66 GTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
* * * * * * *
106277865 AACTGCCACAAACTAGAAACTGTTCCGATAAAAGGAAGATATTCATCTCTTAAAAAGCTTCATGT
131 GACTGCCACGAACTGGAAACTGTTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACGT
*
106277930 TTCCTTGTGTCCAAA
196 TTCCTCGTGTCCAAA
*
106277945 ATTAAGCAAGATGGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGGTT
1 ATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGGTT
* * *
106278010 GTTCTAATTTCAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATTA
66 GTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
* *
106278075 GACTGCCACGAGCTGGAAACTGTTCCGAT-AGAAGGAAGATGTTTATCTCTTGAAAAGCTTCACG
131 GACTGCCACGAACTGGAAACTGTTCCGATAAG-AGGAAGATGTTCATCTCTTGAAAAGCTTCACG
106278139 TTTCCTCGTGTCCAAA
195 TTTCCTCGTGTCCAAA
*
106278155 ATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTATTCTTGAAGAATTAAAGCTAAGTGGTT
1 ATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGGTT
* *
106278220 GTTCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCAAATTTTAGATATATCA
66 GTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
* *
106278285 GACTGCCACGAATTGGAAACTGTTCTGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACGT
131 GACTGCCACGAACTGGAAACTGTTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACGT
*
106278350 TTCCTCATGTCCAAA
196 TTCCTCGTGTCCAAA
* * *
106278365 ATTAAGCAAGATAGGAGACGGGATGTCTACCTCCACTATTCTTGAAGAATTAAAGTTAAGTGGTT
1 ATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGGTT
* *
106278430 GTGCTAATTTAAGTTCCATTCCAGATTTGGAAGAAATTTCCTCTCTCCGAATTTTAGATATATCA
66 GTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
* * * *
106278495 GGCTGCCACGAATTGGAAATTGTTCCGATTAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACGT
131 GACTGCCACGAACTGGAAACTGTTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACGT
*
106278560 TTCCTTGTGTCCAAA
196 TTCCTCGTGTCCAAA
* * *
106278575 ATTAAGCAAGATAGGAGATGGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAATGATT
1 ATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGGTT
* *
106278640 GTGCTTATTTAAGTTCCATTCCAGATTT-GATAGGATTTTCCTC-CTTCCGAATTTTAAATATAT
66 GTGCTAATTTAAGTTCCATTCCAGATTTGGA-AGGATTTTCCTCTC-TCCGAATTTTAGATATAT
* * *
106278703 CAGACTGCCACGAACTGGAAACTATTCCGGTAAGAGGAAGATGTTCATCTCTTGAAAAGCTTTAC
129 CAGACTGCCACGAACTGGAAACTGTTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCAC
*
106278768 GATTT-CTCATGTCCAAA
194 G-TTTCCTCGTGTCCAAA
* * * * *
106278785 ATTAAGCAAGATAGGAGACCGGTTGTCTACCTCCACTAGTCTTGAAAAAGTAAAGCCAATTGGTT
1 ATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGGTT
* * * *
106278850 GTGCTAATTTAAATTTCATTCCAGATTTAGAAGGAATTTCCTCTCTCCGAATTTTAGATATATCA
66 GTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
* * * * * * * *
106278915 AACTGCCACAAACTGAAAACTATTCCTATAAGAGGAAGATGTTCATCTCTTGAAAAGTTTCTCAT
131 GACTGCCACGAACTGGAAACTGTTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACGT
* * *
106278980 TTCTTGGTGTCCTAA
196 TTCCTCGTGTCCAAA
* * * * * * *****
106278995 ATTAAGCAAGATAGGAAACGGGCTGTCTACCGCCACT--TACCTCAAAAAGTTAAAGCTATCCCA
1 ATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTAGT-CTTGAAGAA-TTAAAGCTAAGTGG
* * * * * *
106279058 TTGTGGTAACTTAAATTCCATTCCAGATTT-AATAGGATTTTCCTCTCTTC-ATATTTTAAATAT
64 TTGTGCTAATTTAAGTTCCATTCCAGATTTGGA-AGGATTTTCCTCTCTCCGA-ATTTTAGATAT
* * *
106279121 ATCAGACTGCAAC-AATCTGGAAATTGTT-CGAATAACAGGAAG
127 ATCAGACTGCCACGAA-CTGGAAACTGTTCCG-ATAAGAGGAAG
106279163 GAACTCAACT
Statistics
Matches: 1270, Mismatches: 144, Indels: 28
0.88 0.10 0.02
Matches are distributed among these distances:
208 1 0.00
209 19 0.01
210 1242 0.98
211 8 0.01
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.33
Consensus pattern (210 bp):
ATTAAGCAAGATAGGAGACGGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGGTT
GTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
GACTGCCACGAACTGGAAACTGTTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACGT
TTCCTCGTGTCCAAA
Found at i:106296354 original size:21 final size:22
Alignment explanation
Indices: 106296325--106296371 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
106296315 CAGAAGGAGT
*
106296325 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
106296347 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
106296368 GAGT
1 GAGT
106296372 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:106297669 original size:210 final size:210
Alignment explanation
Indices: 106297410--106298457 Score: 1659
Period size: 210 Copynumber: 5.0 Consensus size: 210
106297400 GTGTAAGGAA
* * * *
106297410 TTAAGCGAGATAGGAGGCGGGTTGTCTACCTCCACTTGTCTTAAAGAATTAAAGCTAAGTGGCTG
1 TTAAGCAAGATAGGAGACGGGTTGTCGACCTCCACTTATCTTAAAGAATTAAAGCTAAGTGGCTG
*
106297475 TGCTAATTTAAGCTCCATTCCAGATTTGGAAGGATTTTCCTTTCTTCGAAATCTAGATATATCAG
66 TGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTTTCTTCGAAATCTAGATATATCAG
*
106297540 AGTGCAGCAAACTGGAAATTGTTCCAATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACATT
131 AGTGCAGCAAACTGGAAATTGTTCCAATAAGAGGAAGATGTTCATCTCTTCAAAAGCTTCACATT
106297605 TCCTCGTGTCAAAAC
196 TCCTCGTGTCAAAAC
* *
106297620 TTAAGCAAGATAGGAGACGGGTTGTCGACCTCCAGTTGTCTTAAAGAATTAAAGCTAAGTGGCTG
1 TTAAGCAAGATAGGAGACGGGTTGTCGACCTCCACTTATCTTAAAGAATTAAAGCTAAGTGGCTG
106297685 TGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTTTCTTCGAAATCTAGATATATCAG
66 TGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTTTCTTCGAAATCTAGATATATCAG
* *
106297750 AGTGCAACAAACTGGAAATTGTTCCAATAAGGGGAAGATGTTCATCTCTTCAAAAGCTTCACATT
131 AGTGCAGCAAACTGGAAATTGTTCCAATAAGAGGAAGATGTTCATCTCTTCAAAAGCTTCACATT
106297815 TCCTCGTGTCAAAAC
196 TCCTCGTGTCAAAAC
* * *
106297830 TTAAGCAAGATAGGAGACTGGTTGTCGACTTCCACTTATCTTATAGAATTAAAGCTAAGTGGCTG
1 TTAAGCAAGATAGGAGACGGGTTGTCGACCTCCACTTATCTTAAAGAATTAAAGCTAAGTGGCTG
*
106297895 TGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCGTTCTTCGAAATCTAGATATATCAG
66 TGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTTTCTTCGAAATCTAGATATATCAG
*
106297960 AGTGTAGCAAACTGGAAATTGTTCCAATAAGAGGAAGATGTTCATCTCTTCAAAAGCTTCACATT
131 AGTGCAGCAAACTGGAAATTGTTCCAATAAGAGGAAGATGTTCATCTCTTCAAAAGCTTCACATT
106298025 TCCTCGTGTCAAAAC
196 TCCTCGTGTCAAAAC
* * * *
106298040 TTAAGCAAGATAGGAGACTGGTTGTCGACTTCCGCTTATCTTATAGAATTAAAGCTAAGTGGCTG
1 TTAAGCAAGATAGGAGACGGGTTGTCGACCTCCACTTATCTTAAAGAATTAAAGCTAAGTGGCTG
* *
106298105 TGCTAAATTAAGTTCCATTCCAGATTTGGAAGGATTTTCCGTTCTTCGAAATCTAGATATATCAG
66 TGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTTTCTTCGAAATCTAGATATATCAG
*
106298170 AGTGCAGCAAACTGGAAATTGTTCCAATAAGAGGAAGATGTTCATCTCTTCAAAAGTTTCACATT
131 AGTGCAGCAAACTGGAAATTGTTCCAATAAGAGGAAGATGTTCATCTCTTCAAAAGCTTCACATT
106298235 TCCTCGTGTCAAAAC
196 TCCTCGTGTCAAAAC
* * * * **
106298250 TTAAGCAAGATAGGAGATGGGTTGTCTACCTCCACTTATCTTAAAGAATTAAAGTTAAGCGATTG
1 TTAAGCAAGATAGGAGACGGGTTGTCGACCTCCACTTATCTTAAAGAATTAAAGCTAAGTGGCTG
* * * * * * * *
106298315 TCCTAATTTATGTTCCATTCTAGATTTGGAAGGATTTCCCTCTCTT-AAAATTTTAGATTTATCA
66 TGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTTTCTTCGAAA-TCTAGATATATCA
* * * * * * *
106298379 AACTGCAACGAACTGGAAATTGTTCCGATAAGAGGACA-ATGTTCATCTCTTGAAAAGCTTCTCA
130 GAGTGCAGCAAACTGGAAATTGTTCCAATAAGAGGA-AGATGTTCATCTCTTCAAAAGCTTCACA
**
106298443 TTTCCGGGTGTCAAA
194 TTTCCTCGTGTCAAA
106298458 GCAAGATAGA
Statistics
Matches: 785, Mismatches: 51, Indels: 4
0.93 0.06 0.00
Matches are distributed among these distances:
209 3 0.00
210 781 0.99
211 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (210 bp):
TTAAGCAAGATAGGAGACGGGTTGTCGACCTCCACTTATCTTAAAGAATTAAAGCTAAGTGGCTG
TGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTTTCTTCGAAATCTAGATATATCAG
AGTGCAGCAAACTGGAAATTGTTCCAATAAGAGGAAGATGTTCATCTCTTCAAAAGCTTCACATT
TCCTCGTGTCAAAAC
Found at i:106305295 original size:25 final size:25
Alignment explanation
Indices: 106305267--106305323 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
106305257 TTTAATACTT
106305267 TTTTTAAGTTTT-GTCTTTATTATTA
1 TTTTTAA-TTTTAGTCTTTATTATTA
* * *
106305292 TTTTTTATTTTATTTTTTATTATTA
1 TTTTTAATTTTAGTCTTTATTATTA
*
106305317 ATTTTAA
1 TTTTTAA
106305324 AAAATTTAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 4 0.15
25 22 0.85
ACGTcount: A:0.23, C:0.02, G:0.04, T:0.72
Consensus pattern (25 bp):
TTTTTAATTTTAGTCTTTATTATTA
Found at i:106305303 original size:31 final size:31
Alignment explanation
Indices: 106305231--106305303 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 31
106305221 ACCCTTTTAC
*
106305231 TTTTTTTTTTAAGTTTTGTCCTTTTTTTTAA
1 TTTTTTTTTTAAGTTTTGTCCTTTTTATTAA
**
106305262 TACTTTTTTTAAGTTTTGT-CTTTATTATT-A
1 TTTTTTTTTTAAGTTTTGTCCTTT-TTATTAA
106305292 TTTTTTATTTTA
1 TTTTTT-TTTTA
106305304 TTTTTTATTA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
30 9 0.26
31 26 0.74
ACGTcount: A:0.16, C:0.05, G:0.05, T:0.73
Consensus pattern (31 bp):
TTTTTTTTTTAAGTTTTGTCCTTTTTATTAA
Found at i:106305322 original size:12 final size:13
Alignment explanation
Indices: 106305282--106305321 Score: 64
Period size: 12 Copynumber: 3.1 Consensus size: 13
106305272 AAGTTTTGTC
106305282 TTTATTATTATTT
1 TTTATTATTATTT
106305295 TTTATT-TTATTT
1 TTTATTATTATTT
106305307 TTTATTATTAATTT
1 TTTATTATT-ATTT
106305321 T
1 T
106305322 AAAAAATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.48
13 8 0.32
14 5 0.20
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTATTATTATTT
Found at i:106305401 original size:25 final size:25
Alignment explanation
Indices: 106305328--106305402 Score: 77
Period size: 23 Copynumber: 3.1 Consensus size: 25
106305318 TTTTAAAAAA
* *
106305328 TTTAAA-ATGTATATTTGAAATT-T
1 TTTAAATATATATTTTTGAAATTAT
**
106305351 TTTATAATATATATTTTTTTAA--AT
1 TTTA-AATATATATTTTTGAAATTAT
106305375 TTTAAATATATATTTTTGAAATTAT
1 TTTAAATATATATTTTTGAAATTAT
106305400 TTT
1 TTT
106305403 TTCAATTTTA
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
23 19 0.46
24 7 0.17
25 15 0.37
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (25 bp):
TTTAAATATATATTTTTGAAATTAT
Found at i:106305410 original size:21 final size:21
Alignment explanation
Indices: 106305395--106305443 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
106305385 TATTTTTGAA
106305395 ATTATTTTTTCAATTTTAAAT
1 ATTATTTTTTCAATTTTAAAT
* *
106305416 ATTATTTTTTAAATATTAAAT
1 ATTATTTTTTCAATTTTAAAT
106305437 ATT-TTTT
1 ATTATTTT
106305444 AATAATATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 4 0.15
21 22 0.85
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (21 bp):
ATTATTTTTTCAATTTTAAAT
Found at i:106305410 original size:34 final size:33
Alignment explanation
Indices: 106305365--106305429 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 33
106305355 TAATATATAT
106305365 TTTTTTAAATTTTAAATATATATTTTTGAAATTA
1 TTTTTTAAATTTTAAATAT-TATTTTTGAAATTA
* *
106305399 TTTTTTCAATTTTAAATATTATTTTTTAAAT
1 TTTTTTAAATTTTAAATATTATTTTTGAAAT
106305430 ATTAAATATT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 11 0.38
34 18 0.62
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (33 bp):
TTTTTTAAATTTTAAATATTATTTTTGAAATTA
Found at i:106305518 original size:30 final size:31
Alignment explanation
Indices: 106305462--106305521 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
106305452 AAAACATCTA
* *
106305462 AATATTTTATTATTAGTTTTATAATATTTTT
1 AATATTTTATAATTAGTTTCATAATATTTTT
*
106305493 AATATTTT-TAATTTGTTTCATAATATTTT
1 AATATTTTATAATTAGTTTCATAATATTTT
106305522 ATATTATGAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.63
Consensus pattern (31 bp):
AATATTTTATAATTAGTTTCATAATATTTTT
Found at i:106306254 original size:20 final size:21
Alignment explanation
Indices: 106306198--106306255 Score: 75
Period size: 21 Copynumber: 2.8 Consensus size: 21
106306188 ATAAAGCACT
*
106306198 TTTTTAAAATTTTAAATATTA
1 TTTTTAAAATATTAAATATTA
*
106306219 TTTTTTAAATATTAAATA-TA
1 TTTTTAAAATATTAAATATTA
106306239 TTTTTAATAATA-TAAAT
1 TTTTTAA-AATATTAAAT
106306256 CATTTAAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 13 0.39
21 20 0.61
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (21 bp):
TTTTTAAAATATTAAATATTA
Found at i:106306340 original size:32 final size:34
Alignment explanation
Indices: 106306299--106306363 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 34
106306289 TTTATTATTA
* *
106306299 GTTTTATAATATTTTAAA-TAT-TTTTTTAATTT
1 GTTTCATAATATTTTAAATTATGATTTTTAATTT
106306331 GTTTCATAATATTTTAAATTATGATTTTTAATT
1 GTTTCATAATATTTTAAATTATGATTTTTAATT
106306364 ATTTAAAGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 17 0.59
33 3 0.10
34 9 0.31
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.62
Consensus pattern (34 bp):
GTTTCATAATATTTTAAATTATGATTTTTAATTT
Found at i:106310493 original size:42 final size:42
Alignment explanation
Indices: 106310434--106310559 Score: 234
Period size: 42 Copynumber: 3.0 Consensus size: 42
106310424 ATCCATCAGA
*
106310434 AAACAGTACTATTCCACCTAACCTTCTTAAATACACCAGCTT
1 AAACAGTACTATTCCACCAAACCTTCTTAAATACACCAGCTT
*
106310476 AAACAGTACTATTCCACCAAACCTTCTTAAATACACCGGCTT
1 AAACAGTACTATTCCACCAAACCTTCTTAAATACACCAGCTT
106310518 AAACAGTACTATTCCACCAAACCTTCTTAAATACACCAGCTT
1 AAACAGTACTATTCCACCAAACCTTCTTAAATACACCAGCTT
106310560 TCTTAAAAAC
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 81 1.00
ACGTcount: A:0.37, C:0.31, G:0.06, T:0.27
Consensus pattern (42 bp):
AAACAGTACTATTCCACCAAACCTTCTTAAATACACCAGCTT
Found at i:106315122 original size:210 final size:210
Alignment explanation
Indices: 106314839--106316253 Score: 2234
Period size: 210 Copynumber: 6.7 Consensus size: 210
106314829 GTGTAAGGAA
* ** * * * *
106314839 TTAAGCGAGATAGGAGGCGGGTTGTCTACCTCCACTTGTCTTAAAGAATTAAAGCTAAGTGGCTG
1 TTAAGCAAGATAGGAGATGGGTTGTCGACCTCCACTTATCTTGAAGAATTAAAGTTAAGTGGCTG
*
106314904 TGCTAATTTAAGCTCCATTCCAGATTTGGAAGGATTTTCCTTTCTTCGAAATCTAGATATATCAG
66 TGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTTTCTTCGAAATCTAGATATATCAG
106314969 AGTGCAGCAAACTGGAAATTGTTCCAATAAGAGGAAGATGTTCATCTCTTCAAAAGCTTCACATT
131 AGTGCAGCAAACTGGAAATTGTTCCAATAAGAGGAAGATGTTCATCTCTTCAAAAGCTTCACATT
106315034 TCCTCGTGTCGAAAAC
196 TCCTCGTGTC-AAAAC
* * * **
106315050 -TAAGCAAGATTGGAGATGGGTTGTCGACCTCCACTAATCTTGAAGAATTGAAGTTAAGTGATTG
1 TTAAGCAAGATAGGAGATGGGTTGTCGACCTCCACTTATCTTGAAGAATTAAAGTTAAGTGGCTG
*
106315114 TCCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTTTCTTCGAAATCTAGATATATCAG
66 TGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTTTCTTCGAAATCTAGATATATCAG
* *
106315179 AGTGCAGCAAACTGGAAATTGTTCCAATAAGGGGAAGATGTTCATCTCTTGAAAAGCTTCACATT
131 AGTGCAGCAAACTGGAAATTGTTCCAATAAGAGGAAGATGTTCATCTCTTCAAAAGCTTCACATT
106315244 TCCTCGTGTCAAAAC
196 TCCTCGTGTCAAAAC
* * * * *
106315259 TTAAGCAAGATAGGAGACGGGTTGTCGACCTCCAGTTGTCTTAAAGAATTAAAGCTAAGTGGCTG
1 TTAAGCAAGATAGGAGATGGGTTGTCGACCTCCACTTATCTTGAAGAATTAAAGTTAAGTGGCTG
106315324 TGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTTTCTTCGAAATCTAGATATATCAG
66 TGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTTTCTTCGAAATCTAGATATATCAG
* * *
106315389 AGTGCAGCAAACTGGAAATTGTTCCAATAAGGGGAAGGTGTTCATCTCTTGAAAAGCTTCACATT
131 AGTGCAGCAAACTGGAAATTGTTCCAATAAGAGGAAGATGTTCATCTCTTCAAAAGCTTCACATT
106315454 TCCTCGTGTCAAAAC
196 TCCTCGTGTCAAAAC
* * * * * *
106315469 TTAAGCAAGATAGGAGACGGGTTGTCGACCTCCAGTTGTCCT-ATAGAATTAAAGCTATGTGGCT
1 TTAAGCAAGATAGGAGATGGGTTGTCGACCTCCACTTATCTTGA-AGAATTAAAGTTAAGTGGCT
106315533 GTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTTTCTTCGAAATCTAGATATATCA
65 GTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTTTCTTCGAAATCTAGATATATCA
** * * *
106315598 GAGTGCAGCAAACTGGAAATTGTTCCAGGAAGGGGAAGGTGTTCATCTCTTGAAAAGCTTCACAT
130 GAGTGCAGCAAACTGGAAATTGTTCCAATAAGAGGAAGATGTTCATCTCTTCAAAAGCTTCACAT
*
106315663 TTTCTCGTGTCAAAAC
195 TTCCTCGTGTCAAAAC
*
106315679 TTAAGCAAGATAGGAGACT-GGTTGTCGACTTCCACTTATCTT-ATAGAATTAAAGTTAAGTGGC
1 TTAAGCAAGATAGGAGA-TGGGTTGTCGACCTCCACTTATCTTGA-AGAATTAAAGTTAAGTGGC
* *
106315742 TGTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCGTTCTTCAAAATCTAGATATATC
64 TGTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTTTCTTCGAAATCTAGATATATC
* * *
106315807 AGAATGCAACAAACTGGAAATTGTTCCAATAAGAGGAAGATGTTTATCTCTTCAAAAGCTTCACA
129 AGAGTGCAGCAAACTGGAAATTGTTCCAATAAGAGGAAGATGTTCATCTCTTCAAAAGCTTCACA
106315872 TTTCCTCGTGTCAAAAC
194 TTTCCTCGTGTCAAAAC
* **
106315889 TTAAGCAAGATAGGAGACT-GGTTGTCGACCTCCACTTATCTTGAAGAATTGAAGTTAAGTGATT
1 TTAAGCAAGATAGGAGA-TGGGTTGTCGACCTCCACTTATCTTGAAGAATTAAAGTTAAGTGGCT
*
106315953 GTCCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTTTCTTCGAAATCTAGATATATCA
65 GTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTTTCTTCGAAATCTAGATATATCA
**
106316018 GAGTGCAGCAAACTGGAAATTGTTCCAATAAGAGGAAGATGTTCATCTCTTCAAAAATTTCACAT
130 GAGTGCAGCAAACTGGAAATTGTTCCAATAAGAGGAAGATGTTCATCTCTTCAAAAGCTTCACAT
106316083 TTCCTCGTGTCGAAAAC
195 TTCCTCGTGTC-AAAAC
* **
106316100 -TAAGCAAGATTGGAGATGGGTTGTCGACCTCCAC-TATTCTTGAAGAATTGAAA-TTAAGTGAT
1 TTAAGCAAGATAGGAGATGGGTTGTCGACCTCCACTTA-TCTTGAAGAATT-AAAGTTAAGTGGC
*
106316162 TGTCCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTTTCTTCGAAATCTAGATATATC
64 TGTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTTTCTTCGAAATCTAGATATATC
106316227 AGAGTGCAGCAAACTGGAAATTGTTCC
129 AGAGTGCAGCAAACTGGAAATTGTTCC
106316254 GAGAGTAGGG
Statistics
Matches: 1131, Mismatches: 65, Indels: 17
0.93 0.05 0.01
Matches are distributed among these distances:
209 9 0.01
210 1114 0.98
211 8 0.01
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (210 bp):
TTAAGCAAGATAGGAGATGGGTTGTCGACCTCCACTTATCTTGAAGAATTAAAGTTAAGTGGCTG
TGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTTTCTTCGAAATCTAGATATATCAG
AGTGCAGCAAACTGGAAATTGTTCCAATAAGAGGAAGATGTTCATCTCTTCAAAAGCTTCACATT
TCCTCGTGTCAAAAC
Found at i:106317304 original size:19 final size:19
Alignment explanation
Indices: 106317280--106317338 Score: 65
Period size: 19 Copynumber: 3.4 Consensus size: 19
106317270 GAAAAGTAAG
106317280 TTCTTTTTCTTATACCCAT
1 TTCTTTTTCTTATACCCAT
* *
106317299 TTC-TTTTC-GATA---AG
1 TTCTTTTTCTTATACCCAT
106317313 TTCTTTTTCTTATACCCAT
1 TTCTTTTTCTTATACCCAT
106317332 TTCTTTT
1 TTCTTTT
106317339 CAATGCAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 10
0.69 0.09 0.22
Matches are distributed among these distances:
14 4 0.13
15 5 0.16
16 3 0.10
17 3 0.10
18 5 0.16
19 11 0.35
ACGTcount: A:0.15, C:0.22, G:0.03, T:0.59
Consensus pattern (19 bp):
TTCTTTTTCTTATACCCAT
Found at i:106317318 original size:33 final size:33
Alignment explanation
Indices: 106317276--106317339 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
106317266 GATAGAAAAG
106317276 TAAGTTCTTTTTCTTATACCCATTTCTTTTCGA
1 TAAGTTCTTTTTCTTATACCCATTTCTTTTCGA
106317309 TAAGTTCTTTTTCTTATACCCATTTCTTTTC
1 TAAGTTCTTTTTCTTATACCCATTTCTTTTC
106317340 AATGCAATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.17, C:0.22, G:0.05, T:0.56
Consensus pattern (33 bp):
TAAGTTCTTTTTCTTATACCCATTTCTTTTCGA
Done.